RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14224
         (150 letters)



>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 172

 Score = 29.1 bits (65), Expect = 0.14
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 68  IRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMN 127
             + + QN M W+ +P L  G Q E+  +            R   TI  +++A       
Sbjct: 18  FTHRIRQNGMEWFGAPGLPSGVQPEHEMM------------RVMGTIFEKKHAENFETF- 64

Query: 128 WWQSPTLHQGPQYEYVTITLDMK 150
              S  L   P+  +      ++
Sbjct: 65  ---SEQLLAVPRISFSLYQDVVR 84


>d1xp4a2 e.3.1.1 (A:25-293) D,D-carboxypeptidase DacA, N-terminal
          domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 269

 Score = 26.4 bits (57), Expect = 1.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 15 FNVASKSSIVVNATCGEV 32
          F +A+K +I V A  G++
Sbjct: 1  FTIAAKHAIAVEANTGKI 18


>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 37 VYCKLKEHRGKADTQCSVCDASSSSP 62
             K+   R      C+VC     +P
Sbjct: 35 CDVKMDRARNTGVISCTVCLEEFQTP 60


>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
           ATP-binding protein {Methanosarcina acetivorans [TaxId:
           2214]}
          Length = 229

 Score = 25.4 bits (55), Expect = 2.6
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 75  NNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRP---STIMCRRYALEQNNMNWWQS 131
              N      + +    + V  T    ++   +DR P   S    +R AL +  +   + 
Sbjct: 89  VKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI 148

Query: 132 PTLHQ 136
             L +
Sbjct: 149 LLLDE 153


>d1opoa_ b.121.4.7 (A:) Carmovirus coat protein {CarMV (Carnation
           mottle virus) [TaxId: 11986]}
          Length = 267

 Score = 25.6 bits (56), Expect = 2.9
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 2   TNELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSS 61
            NEL++  +    + +  + ++    T   + GP +   +     ++    +VC+  +  
Sbjct: 188 GNELQLRVVAAGKWCIIVRGTVEGGFTKPTLIGPGISGDVDY---ESARPIAVCELVTQM 244

Query: 62  PGKKHSIRYVLEQNNMNWWQS 82
            G+   I     +  + W   
Sbjct: 245 EGQILKITKTSAEQPLQWVVY 265


>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita
           pepo var. medullosa) [TaxId: 3663]}
          Length = 129

 Score = 25.0 bits (54), Expect = 3.0
 Identities = 8/68 (11%), Positives = 17/68 (25%)

Query: 69  RYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNW 128
             V+E  N    +   +H     +  T   D           P       + ++     +
Sbjct: 43  SVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFF 102

Query: 129 WQSPTLHQ 136
           +      Q
Sbjct: 103 YHGHLGMQ 110


>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 74

 Score = 23.5 bits (50), Expect = 5.2
 Identities = 4/18 (22%), Positives = 6/18 (33%)

Query: 64 KKHSIRYVLEQNNMNWWQ 81
           +  +  VL  N  N   
Sbjct: 27 SQGEVVQVLAVNQQNMCL 44


>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 62

 Score = 22.4 bits (48), Expect = 9.7
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 64 KKHSIRYVLEQNNMNWWQ 81
          ++  I  VL + N  W +
Sbjct: 25 QEGDIILVLSKVNEEWLE 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 586,066
Number of extensions: 25069
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 13
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)