Query psy14226
Match_columns 532
No_of_seqs 357 out of 1384
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:37:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3820|consensus 100.0 6E-166 1E-170 1266.7 38.7 424 48-526 32-460 (461)
2 TIGR01268 Phe4hydrox_tetr phen 100.0 1E-157 3E-162 1231.3 44.2 419 50-524 14-436 (436)
3 TIGR01270 Trp_5_monoox tryptop 100.0 5E-155 1E-159 1216.5 43.0 428 41-524 21-464 (464)
4 TIGR01269 Tyr_3_monoox tyrosin 100.0 4E-152 8E-157 1185.6 41.9 417 51-524 36-457 (457)
5 PF00351 Biopterin_H: Biopteri 100.0 2E-139 3E-144 1061.2 24.3 331 137-522 1-332 (332)
6 cd03347 eu_PheOH Eukaryotic ph 100.0 3E-130 6E-135 985.4 29.2 305 137-496 1-306 (306)
7 cd03345 eu_TyrOH Eukaryotic ty 100.0 4E-127 9E-132 959.4 27.2 297 138-489 1-298 (298)
8 cd03346 eu_TrpOH Eukaryotic tr 100.0 1E-120 3E-125 909.0 26.0 286 137-477 1-287 (287)
9 PRK11913 phhA phenylalanine 4- 100.0 2.7E-95 6E-100 725.5 22.2 247 169-476 1-251 (275)
10 cd03348 pro_PheOH Prokaryotic 100.0 1.6E-93 3.6E-98 697.0 19.0 223 188-469 3-227 (228)
11 cd00361 arom_aa_hydroxylase Bi 100.0 1.1E-92 2.4E-97 688.8 18.2 220 192-470 1-221 (221)
12 TIGR01267 Phe4hydrox_mono phen 100.0 1.2E-91 2.5E-96 690.3 20.6 225 189-472 4-230 (248)
13 PRK14056 phenylalanine 4-monoo 100.0 6.2E-83 1.4E-87 678.4 21.2 231 189-479 14-289 (578)
14 PRK14055 aromatic amino acid h 100.0 4.4E-80 9.5E-85 625.9 19.3 216 200-475 103-334 (362)
15 COG3186 Phenylalanine-4-hydrox 100.0 4.5E-73 9.8E-78 556.4 15.5 224 189-471 35-260 (291)
16 cd04904 ACT_AAAH ACT domain of 99.8 4.5E-20 9.9E-25 151.1 9.9 73 53-127 1-73 (74)
17 COG0077 PheA Prephenate dehydr 99.8 4.3E-19 9.3E-24 179.1 10.5 79 49-129 191-271 (279)
18 cd04931 ACT_PAH ACT domain of 99.8 6.7E-19 1.5E-23 151.0 9.9 71 49-119 11-82 (90)
19 cd04930 ACT_TH ACT domain of t 99.8 9.5E-19 2.1E-23 156.1 10.8 75 50-126 39-113 (115)
20 cd04929 ACT_TPH ACT domain of 99.8 7.1E-19 1.5E-23 145.6 8.9 68 53-120 1-68 (74)
21 PRK11899 prephenate dehydratas 99.8 1.1E-18 2.4E-23 176.1 10.9 78 50-129 192-271 (279)
22 PRK11898 prephenate dehydratas 99.7 1.6E-17 3.4E-22 167.5 10.8 81 48-130 192-275 (283)
23 PRK10622 pheA bifunctional cho 99.7 1.4E-17 3E-22 174.6 10.6 78 50-129 295-374 (386)
24 cd04880 ACT_AAAH-PDT-like ACT 99.7 5.3E-17 1.1E-21 131.5 9.5 73 54-128 1-75 (75)
25 PLN02317 arogenate dehydratase 99.7 4.8E-17 1E-21 170.4 10.5 79 50-130 281-375 (382)
26 cd04905 ACT_CM-PDT C-terminal 99.7 8.1E-16 1.8E-20 126.4 10.5 77 52-130 1-79 (80)
27 KOG2797|consensus 99.1 2.8E-10 6.2E-15 116.6 7.4 80 48-129 277-367 (377)
28 PRK08818 prephenate dehydrogen 98.4 7.3E-07 1.6E-11 94.0 7.9 63 51-115 294-359 (370)
29 PF01842 ACT: ACT domain; Int 98.1 1.2E-05 2.7E-10 61.9 7.7 64 53-118 1-64 (66)
30 cd04886 ACT_ThrD-II-like C-ter 98.1 2.3E-05 5E-10 60.6 8.2 64 56-119 2-68 (73)
31 cd04888 ACT_PheB-BS C-terminal 97.6 0.00061 1.3E-08 54.4 9.0 73 54-128 2-76 (76)
32 cd04882 ACT_Bt0572_2 C-termina 97.3 0.0012 2.7E-08 50.9 7.5 59 55-118 2-60 (65)
33 cd04874 ACT_Af1403 N-terminal 97.2 0.0027 6E-08 49.1 8.8 63 54-119 2-64 (72)
34 PRK04435 hypothetical protein; 97.2 0.0028 6.1E-08 59.0 9.6 80 50-129 67-146 (147)
35 cd04884 ACT_CBS C-terminal ACT 97.1 0.0023 5E-08 51.5 7.8 64 55-118 2-66 (72)
36 cd02116 ACT ACT domains are co 97.1 0.0029 6.3E-08 44.1 7.1 58 56-115 2-59 (60)
37 cd04878 ACT_AHAS N-terminal AC 97.1 0.0034 7.5E-08 48.2 7.8 65 54-119 2-66 (72)
38 cd04883 ACT_AcuB C-terminal AC 97.0 0.0068 1.5E-07 48.0 9.2 63 53-118 2-64 (72)
39 PF13291 ACT_4: ACT domain; PD 96.9 0.0039 8.3E-08 51.1 7.6 67 52-119 6-73 (80)
40 cd04909 ACT_PDH-BS C-terminal 96.7 0.004 8.7E-08 49.2 6.0 62 54-118 3-65 (69)
41 PRK06737 acetolactate synthase 96.7 0.013 2.8E-07 49.8 9.2 66 53-119 3-68 (76)
42 cd04879 ACT_3PGDH-like ACT_3PG 96.7 0.0069 1.5E-07 46.3 6.9 63 55-120 2-64 (71)
43 cd04903 ACT_LSD C-terminal ACT 96.6 0.01 2.3E-07 45.5 7.6 62 55-119 2-63 (71)
44 cd04902 ACT_3PGDH-xct C-termin 96.6 0.011 2.4E-07 46.5 7.5 70 55-127 2-71 (73)
45 cd04885 ACT_ThrD-I Tandem C-te 96.6 0.0092 2E-07 48.0 7.1 61 56-119 2-63 (68)
46 cd04901 ACT_3PGDH C-terminal A 96.5 0.0074 1.6E-07 47.3 6.1 66 55-125 2-67 (69)
47 cd04887 ACT_MalLac-Enz ACT_Mal 96.5 0.024 5.1E-07 45.2 8.9 63 55-119 2-65 (74)
48 PRK11895 ilvH acetolactate syn 96.3 0.029 6.4E-07 53.6 9.9 74 53-127 3-76 (161)
49 PF13710 ACT_5: ACT domain; PD 96.3 0.021 4.4E-07 46.2 7.5 58 61-119 1-58 (63)
50 COG4492 PheB ACT domain-contai 96.3 0.02 4.3E-07 53.8 8.3 78 51-129 71-149 (150)
51 cd04908 ACT_Bt0572_1 N-termina 96.3 0.022 4.8E-07 45.3 7.5 57 55-118 4-60 (66)
52 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.2 0.032 6.8E-07 43.6 8.2 64 55-119 3-67 (79)
53 cd04906 ACT_ThrD-I_1 First of 96.2 0.032 6.9E-07 47.0 8.5 71 54-128 3-73 (85)
54 TIGR00119 acolac_sm acetolacta 96.1 0.043 9.3E-07 52.2 9.8 73 54-127 3-75 (157)
55 PRK08577 hypothetical protein; 96.0 0.058 1.3E-06 49.2 9.8 74 51-125 55-130 (136)
56 cd04877 ACT_TyrR N-terminal AC 95.9 0.046 1E-06 44.4 8.1 61 54-120 2-63 (74)
57 PRK11152 ilvM acetolactate syn 95.8 0.069 1.5E-06 45.3 8.5 66 52-119 3-68 (76)
58 cd04876 ACT_RelA-SpoT ACT dom 95.7 0.095 2.1E-06 38.5 8.2 62 56-119 2-64 (71)
59 CHL00100 ilvH acetohydroxyacid 95.5 0.086 1.9E-06 51.0 9.4 75 53-128 3-77 (174)
60 PRK08198 threonine dehydratase 95.0 0.16 3.4E-06 53.8 10.3 69 51-119 326-397 (404)
61 TIGR01127 ilvA_1Cterm threonin 94.8 0.11 2.4E-06 54.5 8.6 68 52-119 305-375 (380)
62 PRK13562 acetolactate synthase 94.8 0.24 5.2E-06 43.1 8.9 66 53-119 3-69 (84)
63 cd04873 ACT_UUR-ACR-like ACT d 94.7 0.22 4.7E-06 38.6 8.0 48 54-102 2-49 (70)
64 cd04889 ACT_PDH-BS-like C-term 94.5 0.09 2E-06 40.1 5.3 34 56-89 2-35 (56)
65 PRK06382 threonine dehydratase 94.4 0.19 4.1E-06 53.6 9.2 69 51-119 329-400 (406)
66 PRK08178 acetolactate synthase 94.0 0.43 9.3E-06 42.5 9.1 68 51-120 7-74 (96)
67 PRK00194 hypothetical protein; 93.6 0.33 7.2E-06 40.6 7.4 36 52-87 3-38 (90)
68 cd04899 ACT_ACR-UUR-like_2 C-t 92.8 0.47 1E-05 37.2 6.7 47 54-101 2-48 (70)
69 cd04896 ACT_ACR-like_3 ACT dom 92.7 0.61 1.3E-05 39.6 7.6 62 55-117 3-70 (75)
70 PRK07334 threonine dehydratase 92.5 0.52 1.1E-05 50.2 8.6 68 52-119 326-396 (403)
71 cd04935 ACT_AKiii-DAPDC_1 ACT 92.5 0.71 1.5E-05 38.4 7.6 61 59-127 11-74 (75)
72 cd04926 ACT_ACR_4 C-terminal 92.4 0.73 1.6E-05 37.5 7.5 46 53-99 2-47 (72)
73 cd04869 ACT_GcvR_2 ACT domains 92.2 0.9 2E-05 36.8 7.8 65 55-119 2-70 (81)
74 TIGR02079 THD1 threonine dehyd 92.0 1.1 2.3E-05 48.2 10.3 75 51-128 324-399 (409)
75 PRK08526 threonine dehydratase 91.9 0.95 2.1E-05 48.7 9.8 69 51-119 325-396 (403)
76 COG4747 ACT domain-containing 91.3 0.73 1.6E-05 43.0 7.0 68 53-130 70-137 (142)
77 cd04872 ACT_1ZPV ACT domain pr 91.3 0.97 2.1E-05 37.9 7.3 64 53-117 2-68 (88)
78 PRK08639 threonine dehydratase 91.0 1.5 3.3E-05 47.1 10.2 68 51-119 335-403 (420)
79 cd04875 ACT_F4HF-DF N-terminal 90.3 1.7 3.8E-05 35.1 7.7 32 56-87 3-34 (74)
80 cd04934 ACT_AK-Hom3_1 CT domai 89.9 1.7 3.6E-05 36.2 7.4 55 60-119 12-67 (73)
81 PF13740 ACT_6: ACT domain; PD 89.2 1.9 4.2E-05 35.4 7.3 59 54-115 2-65 (76)
82 COG2061 ACT-domain-containing 88.9 1.7 3.8E-05 42.0 7.6 67 52-119 5-73 (170)
83 PRK09224 threonine dehydratase 88.9 2.2 4.7E-05 47.3 9.5 73 51-129 327-401 (504)
84 cd04890 ACT_AK-like_1 ACT doma 88.6 1.4 3.1E-05 34.1 5.8 52 59-115 10-61 (62)
85 COG0317 SpoT Guanosine polypho 87.6 2.7 5.9E-05 48.7 9.5 69 50-120 625-694 (701)
86 cd04932 ACT_AKiii-LysC-EC_1 AC 87.5 4.6 0.0001 33.6 8.5 56 59-119 11-69 (75)
87 cd04907 ACT_ThrD-I_2 Second of 87.4 2.9 6.2E-05 35.5 7.3 63 54-119 3-65 (81)
88 cd04912 ACT_AKiii-LysC-EC-like 87.2 3.2 6.9E-05 34.0 7.3 55 59-118 11-68 (75)
89 cd04870 ACT_PSP_1 CT domains f 87.0 2.9 6.4E-05 34.0 7.0 59 59-118 6-66 (75)
90 cd04891 ACT_AK-LysC-DapG-like_ 86.9 2.7 5.9E-05 31.0 6.3 44 57-100 6-49 (61)
91 PRK11092 bifunctional (p)ppGpp 86.6 3.4 7.3E-05 47.9 9.6 68 52-121 626-694 (702)
92 PRK12483 threonine dehydratase 86.6 3.6 7.7E-05 46.1 9.6 73 51-129 344-418 (521)
93 cd04911 ACT_AKiii-YclM-BS_1 AC 86.5 3.5 7.5E-05 35.3 7.3 63 59-126 11-74 (76)
94 TIGR00691 spoT_relA (p)ppGpp s 85.4 4.1 8.9E-05 47.0 9.5 67 51-119 609-676 (683)
95 cd04913 ACT_AKii-LysC-BS-like_ 85.0 5.3 0.00012 30.8 7.3 29 57-85 7-35 (75)
96 cd04933 ACT_AK1-AT_1 ACT domai 84.9 4.6 0.0001 34.3 7.3 56 59-119 11-72 (78)
97 PLN02550 threonine dehydratase 84.9 4.1 9E-05 46.4 9.1 72 52-129 417-489 (591)
98 TIGR01124 ilvA_2Cterm threonin 83.3 6.5 0.00014 43.7 9.7 72 51-128 324-396 (499)
99 PRK10872 relA (p)ppGpp synthet 82.3 7.1 0.00015 45.7 9.8 68 52-120 666-734 (743)
100 cd04897 ACT_ACR_3 ACT domain-c 81.6 8.9 0.00019 32.6 7.7 61 53-116 2-69 (75)
101 COG3283 TyrR Transcriptional r 79.7 6.3 0.00014 43.2 7.7 109 57-180 5-114 (511)
102 PF00585 Thr_dehydrat_C: C-ter 79.5 3.5 7.5E-05 35.7 4.7 66 51-119 9-75 (91)
103 cd04900 ACT_UUR-like_1 ACT dom 79.2 11 0.00023 30.6 7.3 34 53-86 2-37 (73)
104 cd04893 ACT_GcvR_1 ACT domains 78.3 21 0.00045 29.5 8.8 63 55-118 4-67 (77)
105 COG1707 ACT domain-containing 78.2 9 0.00019 37.9 7.5 70 56-127 6-75 (218)
106 PRK06349 homoserine dehydrogen 78.2 8.3 0.00018 41.8 8.2 67 52-119 348-414 (426)
107 COG0440 IlvH Acetolactate synt 76.4 10 0.00023 36.8 7.4 74 52-128 4-77 (163)
108 PRK11790 D-3-phosphoglycerate 74.6 9.5 0.00021 41.2 7.4 70 51-126 337-407 (409)
109 COG3830 ACT domain-containing 74.6 5.5 0.00012 35.3 4.6 49 55-104 4-54 (90)
110 cd04895 ACT_ACR_1 ACT domain-c 73.8 6.1 0.00013 33.2 4.5 49 53-104 2-53 (72)
111 PRK11589 gcvR glycine cleavage 72.3 13 0.00028 36.6 7.1 64 55-118 98-168 (190)
112 PRK06545 prephenate dehydrogen 71.3 9 0.0002 40.3 6.2 40 52-91 290-329 (359)
113 TIGR01693 UTase_glnD [Protein- 69.6 14 0.0003 43.4 7.8 54 48-102 775-828 (850)
114 PRK13011 formyltetrahydrofolat 68.1 41 0.00089 35.0 10.0 65 53-118 8-76 (286)
115 cd04868 ACT_AK-like ACT domain 67.1 18 0.0004 26.0 5.4 48 61-115 12-59 (60)
116 PRK13010 purU formyltetrahydro 66.6 32 0.0007 35.8 9.0 64 54-118 11-80 (289)
117 PRK05092 PII uridylyl-transfer 63.4 18 0.0004 43.0 7.3 53 50-103 841-894 (931)
118 cd04923 ACT_AK-LysC-DapG-like_ 62.5 37 0.00081 25.4 6.5 50 59-117 10-59 (63)
119 PRK13581 D-3-phosphoglycerate 62.2 27 0.00059 39.0 7.9 72 51-126 451-523 (526)
120 cd04936 ACT_AKii-LysC-BS-like_ 61.2 39 0.00084 25.3 6.4 50 59-117 10-59 (63)
121 cd04914 ACT_AKi-DapG-BS_1 ACT 60.3 21 0.00045 28.9 5.0 38 59-101 9-46 (67)
122 PLN02627 glutamyl-tRNA synthet 59.7 4.7 0.0001 45.5 1.5 155 334-524 247-420 (535)
123 PRK06027 purU formyltetrahydro 59.2 56 0.0012 33.9 9.1 64 54-118 6-76 (286)
124 PF02449 Glyco_hydro_42: Beta- 55.4 27 0.00058 36.8 6.1 127 64-206 10-154 (374)
125 cd04924 ACT_AK-Arch_2 ACT doma 54.9 47 0.001 25.3 6.0 52 59-117 11-62 (66)
126 PRK11589 gcvR glycine cleavage 54.5 63 0.0014 31.8 8.1 62 52-116 6-72 (190)
127 PF13840 ACT_7: ACT domain ; P 54.1 66 0.0014 25.9 6.9 55 52-116 8-64 (65)
128 PRK05007 PII uridylyl-transfer 52.7 39 0.00084 40.3 7.5 53 49-104 805-860 (884)
129 cd04927 ACT_ACR-like_2 Second 52.6 1.1E+02 0.0023 25.4 8.1 41 57-99 5-47 (76)
130 cd04892 ACT_AK-like_2 ACT doma 48.4 93 0.002 22.8 6.6 52 59-117 10-61 (65)
131 cd04925 ACT_ACR_2 ACT domain-c 48.1 1.2E+02 0.0026 24.8 7.6 44 55-99 3-46 (74)
132 cd04871 ACT_PSP_2 ACT domains 47.8 37 0.0008 28.8 4.7 58 60-117 7-74 (84)
133 COG4747 ACT domain-containing 45.9 24 0.00052 33.3 3.5 26 58-83 9-34 (142)
134 cd04919 ACT_AK-Hom3_2 ACT doma 45.1 1E+02 0.0022 23.7 6.6 52 59-117 11-62 (66)
135 PF01250 Ribosomal_S6: Ribosom 43.6 1.2E+02 0.0025 25.8 7.2 55 65-119 21-82 (92)
136 TIGR01327 PGDH D-3-phosphoglyc 42.9 60 0.0013 36.3 6.7 71 52-126 451-522 (525)
137 cd04922 ACT_AKi-HSDH-ThrA_2 AC 40.3 83 0.0018 24.0 5.3 52 59-117 11-62 (66)
138 cd04916 ACT_AKiii-YclM-BS_2 AC 40.3 1.3E+02 0.0029 22.8 6.5 52 59-117 11-62 (66)
139 cd04928 ACT_TyrKc Uncharacteri 40.1 2.2E+02 0.0047 23.9 8.0 32 55-86 4-35 (68)
140 COG2716 GcvR Glycine cleavage 39.7 45 0.00097 33.0 4.5 63 53-115 91-162 (176)
141 cd04937 ACT_AKi-DapG-BS_2 ACT 39.7 77 0.0017 24.9 5.1 50 59-117 11-60 (64)
142 PF14350 Beta_protein: Beta pr 39.3 18 0.00039 37.7 1.9 88 91-201 152-268 (347)
143 PRK10820 DNA-binding transcrip 39.3 71 0.0015 35.6 6.6 58 56-119 4-62 (520)
144 KOG3217|consensus 38.7 67 0.0014 31.3 5.4 81 67-151 58-145 (159)
145 PRK09224 threonine dehydratase 38.1 1E+02 0.0022 34.4 7.5 66 51-119 422-487 (504)
146 COG0019 LysA Diaminopimelate d 36.9 24 0.00051 38.3 2.4 74 415-489 74-151 (394)
147 TIGR03278 methan_mark_10 putat 36.9 97 0.0021 33.9 7.0 24 62-86 87-111 (404)
148 PRK14092 2-amino-4-hydroxy-6-h 36.6 2.9E+02 0.0062 26.8 9.4 119 53-186 8-140 (163)
149 PRK06635 aspartate kinase; Rev 36.3 94 0.002 33.1 6.7 43 59-101 270-312 (404)
150 smart00666 PB1 PB1 domain. Pho 35.4 1.3E+02 0.0028 24.5 6.0 49 462-510 21-69 (81)
151 PRK02047 hypothetical protein; 35.3 2.6E+02 0.0055 24.5 8.1 59 60-119 24-85 (91)
152 KOG2663|consensus 35.1 86 0.0019 33.0 5.9 99 51-154 76-185 (309)
153 TIGR00655 PurU formyltetrahydr 33.5 2.2E+02 0.0047 29.7 8.6 62 55-117 3-70 (280)
154 PRK04374 PII uridylyl-transfer 33.0 1.3E+02 0.0028 36.1 7.7 53 48-103 792-847 (869)
155 PRK03059 PII uridylyl-transfer 31.5 1.7E+02 0.0037 35.0 8.4 49 49-100 783-833 (856)
156 PF01288 HPPK: 7,8-dihydro-6-h 30.9 1.6E+02 0.0034 27.0 6.4 97 61-170 10-117 (127)
157 PRK07431 aspartate kinase; Pro 30.9 1.6E+02 0.0034 33.3 7.6 58 58-116 277-334 (587)
158 PF11251 DUF3050: Protein of u 30.8 66 0.0014 33.1 4.2 46 108-166 31-76 (232)
159 PRK00275 glnD PII uridylyl-tra 30.5 1.3E+02 0.0029 36.1 7.3 51 50-103 812-865 (895)
160 cd04918 ACT_AK1-AT_2 ACT domai 30.4 2.4E+02 0.0052 22.3 6.6 57 54-117 5-61 (65)
161 PRK04998 hypothetical protein; 30.1 3.2E+02 0.007 23.5 7.8 58 60-119 23-82 (88)
162 TIGR00166 S6 ribosomal protein 30.1 2E+02 0.0044 24.7 6.6 54 65-118 20-80 (93)
163 cd06830 PLPDE_III_ADC Type III 30.0 55 0.0012 35.2 3.8 75 415-490 64-148 (409)
164 PRK03381 PII uridylyl-transfer 29.9 1.6E+02 0.0034 34.8 7.7 49 51-100 706-754 (774)
165 PRK10239 2-amino-4-hydroxy-6-h 29.6 4.1E+02 0.009 25.6 9.2 110 63-186 16-136 (159)
166 PRK00341 hypothetical protein; 29.4 2.3E+02 0.005 24.8 6.9 59 60-119 25-85 (91)
167 TIGR00656 asp_kin_monofn aspar 28.5 2.6E+02 0.0057 29.7 8.5 52 59-117 270-321 (401)
168 COG5282 Uncharacterized conser 28.4 85 0.0018 33.8 4.7 76 238-356 272-347 (359)
169 smart00031 DED Death effector 28.4 61 0.0013 27.3 3.0 56 196-252 14-69 (79)
170 TIGR00656 asp_kin_monofn aspar 27.8 1.4E+02 0.003 31.8 6.2 52 58-118 346-397 (401)
171 cd04920 ACT_AKiii-DAPDC_2 ACT 27.5 1.9E+02 0.004 22.9 5.5 50 59-117 10-59 (63)
172 PRK00453 rpsF 30S ribosomal pr 27.3 4.1E+02 0.0089 23.4 8.2 55 65-119 22-83 (108)
173 CHL00123 rps6 ribosomal protei 27.1 2.3E+02 0.0051 24.8 6.5 65 53-117 10-85 (97)
174 PRK08210 aspartate kinase I; R 26.7 1.6E+02 0.0034 31.5 6.5 37 60-101 280-316 (403)
175 cd04921 ACT_AKi-HSDH-ThrA-like 26.2 1.9E+02 0.0041 23.1 5.5 40 59-101 11-50 (80)
176 PRK00907 hypothetical protein; 26.1 3E+02 0.0066 24.4 7.0 59 60-119 25-86 (92)
177 COG0016 PheS Phenylalanyl-tRNA 25.9 1.4E+02 0.003 32.3 5.7 74 422-495 178-266 (335)
178 PF00564 PB1: PB1 domain; Int 25.4 2E+02 0.0043 23.4 5.5 50 462-511 22-71 (84)
179 TIGR01047 nspC carboxynorsperm 24.9 3.3E+02 0.0071 29.1 8.4 85 368-489 40-126 (380)
180 TIGR00719 sda_beta L-serine de 24.8 1.7E+02 0.0036 29.0 5.8 51 52-104 148-199 (208)
181 PF03646 FlaG: FlaG protein; 24.0 1.8E+02 0.004 25.4 5.3 52 462-513 37-100 (107)
182 PRK01759 glnD PII uridylyl-tra 24.0 1E+02 0.0023 36.7 4.9 53 48-103 779-834 (854)
183 TIGR01498 folK 2-amino-4-hydro 23.0 2.4E+02 0.0053 26.0 6.1 93 62-167 12-114 (127)
184 cd06829 PLPDE_III_CANSDC Type 22.8 3.5E+02 0.0075 28.4 8.0 85 368-489 38-122 (346)
185 cd05992 PB1 The PB1 domain is 22.5 2.9E+02 0.0062 22.3 5.9 50 462-511 21-70 (81)
186 PRK06635 aspartate kinase; Rev 21.6 1.7E+02 0.0037 31.2 5.5 51 58-117 349-399 (404)
187 PF08411 Exonuc_X-T_C: Exonucl 21.6 39 0.00084 34.8 0.7 87 159-253 180-268 (269)
188 PF06153 DUF970: Protein of un 21.3 3E+02 0.0066 25.3 6.2 52 67-120 14-65 (109)
189 cd06398 PB1_Joka2 The PB1 doma 20.6 2.5E+02 0.0055 24.6 5.5 47 462-509 25-73 (91)
190 PRK09034 aspartate kinase; Rev 20.2 4.4E+02 0.0095 29.1 8.4 53 60-117 319-372 (454)
191 PLN02550 threonine dehydratase 20.1 3.7E+02 0.0081 31.2 8.0 65 52-119 510-574 (591)
192 PRK15385 magnesium transport p 20.0 6.4E+02 0.014 25.9 8.9 65 54-119 144-213 (225)
No 1
>KOG3820|consensus
Probab=100.00 E-value=6.4e-166 Score=1266.67 Aligned_cols=424 Identities=57% Similarity=0.952 Sum_probs=406.6
Q ss_pred ccCCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcC-CccEEE
Q psy14226 48 SAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSS-LGGINL 126 (532)
Q Consensus 48 sg~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~-~~~VkV 126 (532)
.+...++++|++++++|+|+++|++|+.++|||.||||||++....+|++||+|++...++.++++.|++.+. ...+.+
T Consensus 32 ~~~~~~~~if~~r~~~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~~~l~~~i~~lrq~~~~~~~~s~ 111 (461)
T KOG3820|consen 32 EEGARISLIFSLRNKVGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATRGQLIQAIELLRQNHVALSYFSS 111 (461)
T ss_pred cccceEEEEEEecccchHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccchhhHHHHHHHHHHhcccceeccc
Confidence 3455789999999999999999999999999999999999998888899999999988899999999998752 112333
Q ss_pred ecccC---ccCCCCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHH
Q psy14226 127 LTENN---ISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYA 202 (532)
Q Consensus 127 LGs~n---~~e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~ 202 (532)
...+. ...++|||||+|+|||+|+|+|||||++||.|||||+|++||+||++||+||++|| |||||+|+||+||++
T Consensus 112 ~~~~~~~~~~~~vpWFPr~IsdLD~can~vl~Yg~eLDadHPGFkD~vYR~RRk~fadiA~nyKhGdpIP~veYT~eEik 191 (461)
T KOG3820|consen 112 FNRDLKDNKNTSVPWFPRKISDLDQCANRVLKYGPELDADHPGFKDPVYRQRRKFFADIAFNYKHGDPIPRVEYTEEEIK 191 (461)
T ss_pred chhhhhhccCCCCCccccchhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCCCccccCHHHHH
Confidence 33322 23589999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHH
Q psy14226 203 TWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEV 282 (532)
Q Consensus 203 ~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~ 282 (532)
||++||++|.+|+++|||+||+++|++|+++|||++||||||+|||+|||++|||+|||||
T Consensus 192 TWg~Vf~~L~~Ly~~HAC~ey~~~f~lLe~~cg~~ednIPQLeDVs~FLk~~TGF~lRPvA------------------- 252 (461)
T KOG3820|consen 192 TWGTVFRTLTDLYPTHACAEYLDNFPLLEKYCGYREDNIPQLEDVSKFLKKKTGFRLRPVA------------------- 252 (461)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCcCCCCcchHHHHHHHHHhccCceeeccc-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCC
Q psy14226 283 ILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGH 362 (532)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH 362 (532)
||||+||||++||||||||||||||+++|+|||||||||||+||
T Consensus 253 ------------------------------------GlLSaRDFLagLAFRVFhcTQYiRH~s~P~yTPEPD~cHELLGH 296 (461)
T KOG3820|consen 253 ------------------------------------GLLSARDFLAGLAFRVFHCTQYIRHHSSPFYTPEPDTCHELLGH 296 (461)
T ss_pred ------------------------------------ccCcHHHHHhhhhhhheeeeeeeecCCCCCCCCCCchHHHHhcc
Confidence 99999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCcc
Q psy14226 363 MPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPI 442 (532)
Q Consensus 363 ~P~l~~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~ 442 (532)
||||+||+||||||+||+||||||||+|+||+||||||||||||+|+|++||||||||||+|||+|||||+|++++|||+
T Consensus 297 vPLfADp~FAQFSQEIGLASLGAsDe~IEKLaTlywFtVEFGLCkq~g~~KayGAGLLSS~gEL~hals~~pei~~FdP~ 376 (461)
T KOG3820|consen 297 VPLFADPSFAQFSQEIGLASLGASDEDIEKLATLYWFTVEFGLCKQDGELKAYGAGLLSSYGELQHALSDKPEIKDFDPE 376 (461)
T ss_pred chhccChhHHHHhHHhhhhhcCCCHHHHHHhheeeEEEEEEeeeccCCeeeeechhhhhhHHHHHHHhcCCccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHHHHHHHHHHHHHHHHHHHH
Q psy14226 443 STAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNLEMLHLNTAVNK 522 (532)
Q Consensus 443 ~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 522 (532)
.+++|+|.||+|||.|||+|||+|+|+|||+|++||+|||+|||||||+||||||++++|++++++|++|+++|++||.|
T Consensus 377 vt~vq~y~it~yQp~YfvaeSFedAk~KlR~fa~ti~RPF~VrynpyT~svEvLds~~~l~~~~~~l~~dl~~l~~Al~k 456 (461)
T KOG3820|consen 377 VTAVQKYLITTYQPLYFVAESFEDAKEKLRKFASTIKRPFSVRYNPYTQSVEVLDSSAKLERLVSSLRSDLSILTHALSK 456 (461)
T ss_pred ceeeeeccccccccceeehhhHHHHHHHHHHHHHhCCCCceeeeccccceehhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q psy14226 523 LRQT 526 (532)
Q Consensus 523 ~~~~ 526 (532)
|+..
T Consensus 457 i~~~ 460 (461)
T KOG3820|consen 457 IKRS 460 (461)
T ss_pred hccC
Confidence 9864
No 2
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=100.00 E-value=1.4e-157 Score=1231.29 Aligned_cols=419 Identities=52% Similarity=0.895 Sum_probs=409.7
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhcCCccEEEec
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
.+||||+|+++|+||+|+++|++|+++||||+||||||++..+|+|.|||||+++ ++++.++|++|++.+. ..++++|
T Consensus 14 ~~KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~~-~~vkiLG 92 (436)
T TIGR01268 14 IAKTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKAE-VTVNILS 92 (436)
T ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhcc-ceEEEeC
Confidence 3589999999999999999999999999999999999999999999999999998 5899999999998872 3789999
Q ss_pred ccCccCC--CCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHH
Q psy14226 129 ENNISVK--GPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWK 205 (532)
Q Consensus 129 s~n~~e~--vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~ 205 (532)
++++.++ ||||||||+|||+|+|+||+||++|++|||||+|++||+||++||++|++|+ |+|||+|+||++||+||+
T Consensus 93 s~~~~~~~~vpWFPr~isDLD~~~~~vl~yg~~l~~dHPgf~d~~yr~rr~~~a~~a~~y~~g~~ip~v~YT~~e~~~W~ 172 (436)
T TIGR01268 93 RDNKQNKDSVPWFPRKINDIDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAFNYKHGQPIPRVEYTDEEIATWR 172 (436)
T ss_pred CCCcccccCCCCCCCCHHHHHHHhhhhhhccCcccccCcCccCHHHHHHHHHHHHHHhhCCCCCCCCccccCHHHHHHHH
Confidence 8765555 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHH
Q psy14226 206 AVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILE 285 (532)
Q Consensus 206 ~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~ 285 (532)
+||++|++++|+|||++|++||++|+++|||++|+||||+|||++|+++|||+++||+
T Consensus 173 ~l~~~~~~l~~~~Ac~eyl~~l~~L~~~~g~~~d~IPql~dvs~~L~~~TGw~~~pV~---------------------- 230 (436)
T TIGR01268 173 TVFNNLTVLYPTHACQEYNHIFPLLQQNCGFREDNIPQLEDVSQFLQDCTGFTLRPVA---------------------- 230 (436)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEEEecC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCC
Q psy14226 286 KAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPL 365 (532)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~ 365 (532)
||||+|+||++||+|||||||||||+++|+||||||||||++|||||
T Consensus 231 ---------------------------------Gll~~~~F~~~LA~r~F~~t~yiR~~~~~~YtpEPDi~Hel~GHvPl 277 (436)
T TIGR01268 231 ---------------------------------GLLSSRDFLAGLAFRVFHSTQYIRHHSKPMYTPEPDICHELLGHVPL 277 (436)
T ss_pred ---------------------------------CcCCHHHHHHHHhcCccceeeeecccccccCCCCChhHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccc
Q psy14226 366 LADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTA 445 (532)
Q Consensus 366 l~~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~ 445 (532)
|+||.||||+|+||++|+||+++++++|+||||||||||||+|+|++||||||||||+||+.||||++|+++||||+.++
T Consensus 278 la~p~fA~f~q~~G~~~l~a~~~~i~~LarlyWfTVEFGL~~~~~~~k~YGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~ 357 (436)
T TIGR01268 278 FADVEFAQFSQEIGLASLGAPDDYIEKLATLYWFTIEFGLCKQDGEKKAYGAGLLSSFGELQYCLSDKPEVVDFDPEVTC 357 (436)
T ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHhhhheeeeccceecCCCceeEeccchhcCHHHHHHhcCCCCccCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14226 446 VQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNLEMLHLNTAVNKLR 524 (532)
Q Consensus 446 ~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 524 (532)
+|+|+|++|||+|||++||++|+++|++|+++|+|||.||||||||+|+|||++++|.+++++||+||++|++||+||+
T Consensus 358 ~~~y~i~~~Q~~YFv~~sf~~l~~~~~~~~~~~~~pf~~~y~~~t~~v~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 436 (436)
T TIGR01268 358 VTKYPITEFQPLYFLAESFEDAKEKLKSFAATIPRPFSVRYNAYTQRVEILDKKAQLQRLADDIRSEISILQEALGKLN 436 (436)
T ss_pred cCCCCCCCcCCceEEeCCHHHHHHHHHHHHHhCCCCccceecCccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=100.00 E-value=5e-155 Score=1216.47 Aligned_cols=428 Identities=44% Similarity=0.765 Sum_probs=408.1
Q ss_pred cccccccccCCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCce-EEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 41 SESKEAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQ-FDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 41 ~~~~e~~sg~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~e-Y~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
.++++. .+.+||||+|+++|+||+|+++|++|+++||||+||||||++..+|+ |+|||||+++..+++++|++|++.+
T Consensus 21 ~~~~~~-~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~ 99 (464)
T TIGR01270 21 REGDEE-EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGL 99 (464)
T ss_pred CccccC-CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhc
Confidence 344433 45689999999999999999999999999999999999999999999 9999999999889999999999887
Q ss_pred CCccEEEe---cc----------cCccCCCCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhc
Q psy14226 120 SLGGINLL---TE----------NNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY 186 (532)
Q Consensus 120 ~~~~VkVL---Gs----------~n~~e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~ 186 (532)
....+... +. +....+||||||+|+|||+|+|+||+||++|++|||||+|++||+||++||++|++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpWfPr~isdLD~~~~~vl~~~~~l~~dhpgf~d~~yr~rr~~~a~~a~~y 179 (464)
T TIGR01270 100 DVHEVSSPIRPTLIEAQYTEPGSDDATTGVPWFPKKISDLDKCANRVLMYGSELDADHPGFKDTEYRKRRMMFADLALNY 179 (464)
T ss_pred ccceeccccccccccccccccccccccCCCCCCCCCHHHHHHhhhhheeccCcccccCCCCcCHHHHHHHHHHHHHHHhc
Confidence 42223221 11 012346999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCcc
Q psy14226 187 N-GDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGL 265 (532)
Q Consensus 187 ~-g~~ip~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~ 265 (532)
+ |+|||+|+||++||+||++||++|++++|+|||++|++|+++|+++|||++|+||||+|||++|+++|||+++||+
T Consensus 180 ~~g~~ip~v~YT~~E~~~W~~l~~~~~~l~~~~Ac~eyl~gl~~L~~~~g~~~d~IPql~dvs~~L~~~TGw~~~pV~-- 257 (464)
T TIGR01270 180 KHGEPIPRVEYTEEERKTWGTIYRELRRLYKTHACKEFLDNLPLLEKYCGYREDNIPQLEDVSKFLKAKTGFRLRPVA-- 257 (464)
T ss_pred cCCCCCCccccCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCCccCCCCHHHHHHHHHhccCCEEEecc--
Confidence 9 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCC
Q psy14226 266 LTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTK 345 (532)
Q Consensus 266 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~ 345 (532)
||||+|+||++||+|||||||||||++
T Consensus 258 -----------------------------------------------------Gll~~r~F~~~LA~R~F~~tqyIR~~~ 284 (464)
T TIGR01270 258 -----------------------------------------------------GYLSARDFLSGLAFRVFHCTQYVRHSA 284 (464)
T ss_pred -----------------------------------------------------ccCCHHHHHHHHhcCccceeeeecccc
Confidence 999999999999999999999999999
Q ss_pred CCCCCCCchhhHhhhCCCCCCCChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeec-CCceeEeccccccchh
Q psy14226 346 TPFHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKE-NGEVKAYGAGLLSSYG 424 (532)
Q Consensus 346 ~~~ytpePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e-~g~~kayGAGlLSS~g 424 (532)
+|+||||||||||++||||||+||.||||+|+||++|+||++++|++|+||||||||||||++ +|++||||||||||+|
T Consensus 285 ~~~YtpEPDi~HEl~GHvPlLadp~FA~f~q~~G~~sl~a~~e~i~~LarlyWfTVEFGLi~e~~g~lkaYGAGlLSS~g 364 (464)
T TIGR01270 285 DPFYTPEPDTCHELLGHMPLLADPSFAQFSQEIGLASLGASEEDIKKLATLYFFTIEFGLCKQDDEQFKVYGAGLLSSVA 364 (464)
T ss_pred ccCcCCCCchHHHHhcccchhcCHHHHHHHHHHHHhhcCCCHHHHHHHhHhhhhhhhccceecCCCCeEEeeceeeCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhhcCCCCccccCCccccccccccCCCCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHH
Q psy14226 425 ELLHAISDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLEN 504 (532)
Q Consensus 425 E~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~ 504 (532)
|+.||||++|+++||||+.+++|+|+|++|||+|||++||++|+++|++|+++|+|||.||||||||+|||||++++|++
T Consensus 365 El~~~ls~~~~~~pfd~~~~~~~~Y~i~~~Qp~YFv~~Sfe~l~~~l~~f~~~~~rpf~~~y~p~t~~v~vl~~~~~~~~ 444 (464)
T TIGR01270 365 ELQHALSGSAKIKPFDPDRVCEQECLITTFQNAYFYTRSFEEAKEKMREFTNTIKRPFGVRYNPYTESVEVLKNSKSITL 444 (464)
T ss_pred HHHHHccCCCccCCCCHHHHhcCCCCCCCcccceEEeCCHHHHHHHHHHHHHhcCCCccceEcCccceEEeeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy14226 505 LMSQLNLEMLHLNTAVNKLR 524 (532)
Q Consensus 505 ~~~~~~~~~~~~~~a~~~~~ 524 (532)
++++||+||++|++||+||+
T Consensus 445 ~~~~~~~~~~~l~~al~~~~ 464 (464)
T TIGR01270 445 AVNELRSDLNLVAGALHKIS 464 (464)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999974
No 4
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=100.00 E-value=3.6e-152 Score=1185.64 Aligned_cols=417 Identities=59% Similarity=0.989 Sum_probs=401.2
Q ss_pred CeEEEEEEeCCC-ccHHHHHHHHHHHCCcceeeeecccCCCCC---ceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEE
Q psy14226 51 QTAALVLRMREG-MSSLARILKTIEVFKGTVVHLETRVSKMAG---IQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINL 126 (532)
Q Consensus 51 dKTSLIFsL~dk-pGALaeILkvFa~~gINLThIESRPSk~~~---~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkV 126 (532)
..++++|+++++ +|+|.++|++|++++|||+||||||++... .+|+|||||+++..++.++++.|++.+.+..+.+
T Consensus 36 ~~~~~~~~~~~~~~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (457)
T TIGR01269 36 AMQNNQFYIRTKEISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFISGINL 115 (457)
T ss_pred cceeEEEEeccCcchhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhccccccc
Confidence 357889998865 999999999999999999999999998666 6899999999999999999999998764333444
Q ss_pred ecccCccCCCCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHH
Q psy14226 127 LTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWK 205 (532)
Q Consensus 127 LGs~n~~e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~ 205 (532)
.+. ...+||||||+|+|||+|+|+||+||++|++|||||+|++||+||++||++|++|+ |+|||+|+||++||+||+
T Consensus 116 ~~~--~~~~vpWfPr~isdLD~~~~~~l~~g~~l~~dhPgf~d~~yr~RR~~~a~~a~~~~~g~~iP~v~YT~eE~~tW~ 193 (457)
T TIGR01269 116 LNN--QNVKEDWFPKHISELDKCQHLLTKFQPDLDTDHPGFHDKVYRQRREAIAEIAFQYKYGDPIPEVEYTKEEIETWR 193 (457)
T ss_pred cCC--ccccCCCCCCcHHHHHHhhhhhhccCCccccCCCCCCCHHHHHHHHHHHHHhhhccCCCCCCcCccCHHHHHHHH
Confidence 433 34569999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHH
Q psy14226 206 AVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILE 285 (532)
Q Consensus 206 ~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~ 285 (532)
+||++|++++|+|||++|++|+++|+++|||++|+||||+|||++|+++|||+++||+
T Consensus 194 ~l~~rl~~l~~~~Ac~eyl~gl~~L~~~~gl~~d~IPqL~dvs~~L~~~TGw~l~pV~---------------------- 251 (457)
T TIGR01269 194 LVFTTMKDLHASHACREYIDAFQLLEKYCNYNSESIPQLQTISEFLHRTTGFRLRPVA---------------------- 251 (457)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhcCCCcCCCCCHHHHHHHHHhccCCEEEecc----------------------
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCC
Q psy14226 286 KAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPL 365 (532)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~ 365 (532)
||||+|+||++||+|||||||||||+++|+||||||||||++|||||
T Consensus 252 ---------------------------------GLl~~rdF~~~LA~RvFp~TqyIR~~~~~~YtpEPDi~HEl~GHvPl 298 (457)
T TIGR01269 252 ---------------------------------GLLSARDFLASLAFRVFQCTQYIRHHSSPMHTPEPDCIHELLGHMPM 298 (457)
T ss_pred ---------------------------------ccCCHHHHHHHHhcCcccceeeecCccccCCCCCCchHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccc
Q psy14226 366 LADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTA 445 (532)
Q Consensus 366 l~~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~ 445 (532)
|+||.||||+|+||++|+||++++|++|+||||||||||||+++|++||||||||||+||+.||||++|+++||||+.++
T Consensus 299 Ladp~FA~F~q~~G~asl~As~e~i~~LarlYWfTVEFGLi~e~g~lKaYGAGLLSS~GEl~~als~~p~~~pfdp~~~~ 378 (457)
T TIGR01269 299 LADRQFAQFSQEIGLASLGASEEEIEKLSTLYWFTVEFGLCKENGETKAYGAGLLSSYGELEHAFSDLSEKRPFNPNDAA 378 (457)
T ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHhHhHhhhhhcccccCCCceeEeeceeecCHHHHHHHcCCCCccCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14226 446 VQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNLEMLHLNTAVNKLR 524 (532)
Q Consensus 446 ~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 524 (532)
+|+|+|++|||+|||++||++|++|||+|+++|+|||.||||||||+|||||++++|++++++|++||++|++||+||+
T Consensus 379 ~t~Y~I~~~Qp~YFV~eSfe~l~~~l~~f~~~~~rPf~v~y~pyt~svevl~~~~~~~~~~~~~~~e~~~l~~al~k~~ 457 (457)
T TIGR01269 379 VQPYQDQGYQKIYFVTESFEDAKRKLRNYINTSGRPFIVRFDPITETVEVLDRFSKRKELLKHVKEEIGQLTTALNHLN 457 (457)
T ss_pred cCCCCCCCcCCceEEeCCHHHHHHHHHHHHHhCCCCcceeecCccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
No 5
>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....
Probab=100.00 E-value=1.6e-139 Score=1061.21 Aligned_cols=331 Identities=62% Similarity=1.093 Sum_probs=294.6
Q ss_pred CCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHHHHHHHHHhhc
Q psy14226 137 PWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWKAVFNTVLDLM 215 (532)
Q Consensus 137 PWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~~v~~~~~~~~ 215 (532)
|||||+|+|||+|+|+|++||++|++|||||+|++||+||++||++|++|+ |+|||+|+||++||+||++||++|++++
T Consensus 1 pwfp~~i~dld~~~~~~~~~~~~l~~dHPgf~D~~Yr~RR~~ia~~A~~~k~g~pip~v~YT~eE~~tW~~v~~rl~~l~ 80 (332)
T PF00351_consen 1 PWFPRKISDLDKCAHLVLKYGPELDADHPGFKDPEYRKRRKEIADIAFNYKHGDPIPRVEYTEEEHATWRTVYRRLMKLY 80 (332)
T ss_dssp E---SBGGGGGGTTTCEECSSTSCSTTSTTTTSHHHHHHHHHHHHHHHH--TTSTTSGGG--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhhhccccccCCCccccchhhcccHHHHHHHHHHHHHHhccccCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhHHHH
Q psy14226 216 PKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAE 295 (532)
Q Consensus 216 ~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 295 (532)
|+|||++|++||++|++.|||++|+||||+|||++|+++|||++|||+
T Consensus 81 ~~~AC~eyl~~~~~L~~~~G~~~d~IPqL~dvs~~L~~~TGw~l~pV~-------------------------------- 128 (332)
T PF00351_consen 81 PTHACREYLEGFPLLEKYCGYPEDRIPQLEDVSEFLKERTGWQLRPVA-------------------------------- 128 (332)
T ss_dssp HHHB-HHHHHHHHHHHHHHT-BTTB---HHHHHHHHHHHHS-EEEEES--------------------------------
T ss_pred hhhhhHHHHHHHHHHHhccCCCccCCCCHHHHhHHHHhhcCeEEEEeC--------------------------------
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCCCCChhHHHHH
Q psy14226 296 SAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375 (532)
Q Consensus 296 ~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~l~~p~fA~f~ 375 (532)
||||+|+||++||||||||||||||+++|+||||||||||++||||||+||.||+|+
T Consensus 129 -----------------------Gll~~rdF~~~LA~RvFp~TqyIRh~~~p~YtpEPDi~HEl~GHvPmLadp~FA~f~ 185 (332)
T PF00351_consen 129 -----------------------GLLSARDFFAGLAFRVFPCTQYIRHHSEPDYTPEPDIFHELFGHVPMLADPSFADFS 185 (332)
T ss_dssp -----------------------SEB-HHHHHHHHTTTEEEEESS---TTSTTS-SS--HHHHHHHTHHHHTSHHHHHHH
T ss_pred -----------------------cccCHHHHHHHHhcCcCceEeeecCCCCCCCCCCCccHhHHhccchhhhcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccccccCCCCc
Q psy14226 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQEYQ 455 (532)
Q Consensus 376 q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q 455 (532)
|+||++||||+++++++|+||||||||||||+|+|++||||||||||+||++||||++|+++||||+.+++|+|+|++||
T Consensus 186 q~~G~asl~asde~i~~LarlyWfTVEFGL~~e~g~lkaYGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Q 265 (332)
T PF00351_consen 186 QEIGLASLGASDEDIEKLARLYWFTVEFGLCRENGELKAYGAGLLSSYGELEHALSDKPEIRPFDPERVARTPYDITTYQ 265 (332)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHTTTTT-EEEETTEEEE--HHHHT-HHHHHHHTSSSSEEEE--HHHHCTS---SSSS-
T ss_pred HHHHHHHhhhhHHHHHHHHhheeeeeEEEEEecCCceEEecccccccccccccccCCCCeeeccCHHHHhCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHHHHHHHHHHHHHHHHHHHH
Q psy14226 456 PIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNLEMLHLNTAVNK 522 (532)
Q Consensus 456 ~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 522 (532)
|+|||++||+||++|||+|+++|+|||+|+||||||||||||++++|++++++||+||++|++||+|
T Consensus 266 p~YFv~eSfe~~~~klr~fa~~i~rpf~~~ydp~t~svevl~~~~~~~~~~~~~~~~l~~l~~al~k 332 (332)
T PF00351_consen 266 PVYFVIESFEDAKEKLREFAATIKRPFSVRYDPYTQSVEVLDSPQKIKNLVNDLKEELSILSNALSK 332 (332)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTS--SSEEEEETTTTEEEEE-SHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEECCHHHHHHHHHHHHHhCCCCCccccCCCcceEEecCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 6
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=100.00 E-value=2.6e-130 Score=985.36 Aligned_cols=305 Identities=62% Similarity=1.084 Sum_probs=303.5
Q ss_pred CCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHHHHHHHHHhhc
Q psy14226 137 PWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWKAVFNTVLDLM 215 (532)
Q Consensus 137 PWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~~v~~~~~~~~ 215 (532)
|||||||+|||+|+|+||+||++|++|||||+|++||+||++||++|.+|+ |+|||+|+||++||+||++||++|++++
T Consensus 1 pwfp~~~~dld~~~~~~~~~~~~l~~dhpgf~d~~yr~rr~~~a~~a~~y~~g~~ip~v~YT~eE~~~W~~l~~r~~~l~ 80 (306)
T cd03347 1 PWFPRTIQDLDRFANQILSYGAELDADHPGFKDPVYRARRKEFADIAYNYKHGQPIPRVEYTEEEKKTWGTVFRELKSLY 80 (306)
T ss_pred CCCCCcHHHHHHHhhHhhhcCCccccCCCCCCcHHHHHHHHHHHHHHHhccCCCCCCcCcCCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhHHHH
Q psy14226 216 PKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAE 295 (532)
Q Consensus 216 ~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 295 (532)
++|||++|++|+++|+++||+++|+||||+|||++|+++|||+++||+
T Consensus 81 ~~~Ac~eyl~~l~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~-------------------------------- 128 (306)
T cd03347 81 PTHACYEYNHVFPLLEKNCGFSEDNIPQLEDVSNFLQTCTGFRLRPVA-------------------------------- 128 (306)
T ss_pred ccccCHHHHHHHHHHHHhcCCCcCCCCCHHHHHHHHHhccCCEEEecC--------------------------------
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCCCCChhHHHHH
Q psy14226 296 SAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375 (532)
Q Consensus 296 ~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~l~~p~fA~f~ 375 (532)
||||+|+||++||+|||||||||||+++|+||||||||||++||||||+||+||+|+
T Consensus 129 -----------------------Gli~~~~Ff~~LA~R~Fp~t~yIR~~~~~~YtpEPDifHEl~GHvPlLadp~FA~f~ 185 (306)
T cd03347 129 -----------------------GLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDICHELLGHVPLFADPSFAQFS 185 (306)
T ss_pred -----------------------ccCCHHHHHHHHhcCccceeeeecCccccCCCCCCchHHHHhccchhhcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccccccCCCCc
Q psy14226 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQEYQ 455 (532)
Q Consensus 376 q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q 455 (532)
|+||++|++|+++++++|+||||||||||||+++|++||||||||||+||++||||++|+++||||+.+++|+|+|++||
T Consensus 186 q~~G~~~l~a~~~~i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~GE~~~als~~p~~~pfd~~~~~~t~Y~I~~~Q 265 (306)
T cd03347 186 QEIGLASLGAPDEYIEKLATVYWFTVEFGLCKQGGSIKAYGAGLLSSFGELQYCLSDKPELLPFEPEKTAVTKYPITEFQ 265 (306)
T ss_pred HHHHHHhcCCCHHHHHHHhhheeeeeccccccCCCceeEeecchhcCHHHHHHHcCCCCccCCCCHHHHhCCCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEe
Q psy14226 456 PIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVL 496 (532)
Q Consensus 456 ~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~ 496 (532)
|+|||++||++|+++||+|+++|+|||.||||||||+|+||
T Consensus 266 p~YFv~~Sfe~l~~~l~~f~~~~~rpf~~~y~~~t~~v~~~ 306 (306)
T cd03347 266 PLYYVAESFEDAKEKLRNFAATIPRPFSVRYNPYTQRIEVL 306 (306)
T ss_pred CceEEeCCHHHHHHHHHHHHHhCCCCccceecCccceEeeC
Confidence 99999999999999999999999999999999999999986
No 7
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=100.00 E-value=4.1e-127 Score=959.36 Aligned_cols=297 Identities=72% Similarity=1.269 Sum_probs=296.0
Q ss_pred CCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHHHHHHHHHhhcc
Q psy14226 138 WFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWKAVFNTVLDLMP 216 (532)
Q Consensus 138 WFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~~v~~~~~~~~~ 216 (532)
||||+|+|||+|+|+||+||++|++|||||+|++||+||++||++|.+|+ |+|||+++||++||+||++||++|+++++
T Consensus 1 wfp~~~~dld~~~~~~~~~~~~l~~dhpgf~d~~yr~rr~~~a~~a~~y~~g~~ip~v~YT~eE~~~W~~l~~r~~~l~~ 80 (298)
T cd03345 1 WFPRHISELDKCHHLVTKYEPDLDLDHPGFSDKVYRERRKLIAEIAFQYKHGDPIPRVEYTAEEIATWKEVYKTLKDLHA 80 (298)
T ss_pred CCCCCHHHHHHHhhhhhhcCCcccCCCCCCCCHHHHHHHHHHHHHHhcCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhHHHHH
Q psy14226 217 KHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAES 296 (532)
Q Consensus 217 ~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (532)
+|||++|++|+++|+++||+++|+||||+|||++|+++|||+++||+
T Consensus 81 ~~Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~--------------------------------- 127 (298)
T cd03345 81 THACKEYLDAFQLLEKECGYSEDRIPQLEDVSEFLKERTGFQLRPVA--------------------------------- 127 (298)
T ss_pred hhhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhccCCEEEecC---------------------------------
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCCCCChhHHHHHH
Q psy14226 297 AIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFSQ 376 (532)
Q Consensus 297 ~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~l~~p~fA~f~q 376 (532)
||||+|+||++||+|||||||||||+++|+||||||||||++||||||+||+||+|+|
T Consensus 128 ----------------------Gli~~~~Ff~~LA~R~Fp~t~yIR~~~~~~YtpEPDi~HEl~GHvPlLadp~FA~f~q 185 (298)
T cd03345 128 ----------------------GLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADPTFAQFSQ 185 (298)
T ss_pred ----------------------ccCCHHHHHHHHhcCcccccceecCCcccCCCCCCchHHHHhccchhhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccccccCCCCcc
Q psy14226 377 EIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQEYQP 456 (532)
Q Consensus 377 ~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q~ 456 (532)
+||++|++|++++|++|+||||||||||||+++|++||||||||||+||+.||||++|+++||||+.+++|+|+|++|||
T Consensus 186 ~~G~~~l~a~~~~i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~gEl~~als~~p~~~pfd~~~~~~t~Y~i~~~Qp 265 (298)
T cd03345 186 DIGLASLGASDEEIEKLSTLYWFTVEFGLCKENGELKAYGAGLLSSYGELLHALSDEPEHRPFDPAATAVQPYQDQTYQP 265 (298)
T ss_pred HHHHHhcCCCHHHHHHHhHhhhhhhhcccccCCCceeEeechhhcCHHHHHHHCCCCCccCCCCHHHHhcCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeCCHHHHHHHHHHHHHhcCCCceeeecCC
Q psy14226 457 IYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPY 489 (532)
Q Consensus 457 ~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~ 489 (532)
+|||++||++|++|||+|++||+|||.||||||
T Consensus 266 ~YFv~~Sfe~l~~~l~~f~~~~~rpf~~~y~~~ 298 (298)
T cd03345 266 IYFVSESFSDAKDKLRNYASTMKRPFSVRYDPY 298 (298)
T ss_pred ceEEeCCHHHHHHHHHHHHHhcCCCCcccCCCC
Confidence 999999999999999999999999999999998
No 8
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=100.00 E-value=1.5e-120 Score=909.00 Aligned_cols=286 Identities=58% Similarity=1.010 Sum_probs=284.1
Q ss_pred CCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHHHHHHHHHhhc
Q psy14226 137 PWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWKAVFNTVLDLM 215 (532)
Q Consensus 137 PWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~~v~~~~~~~~ 215 (532)
|||||||+|||+|+|+||+||++|++|||||+|++||+||++||++|.+|+ |+|||+|+||++||+||++||++|++++
T Consensus 1 ~wfp~~~~~ld~~~~~~~~~~~~l~~dhpg~~d~~yr~rr~~~a~~a~~y~~g~~ip~i~YT~~E~~~W~~l~~r~~~l~ 80 (287)
T cd03346 1 PWFPKKISDLDKCANRVLMYGSELDADHPGFKDNVYRKRRKYFADVAMNYKHGDPIPRVEYTEEEIKTWGTVYRELNRLY 80 (287)
T ss_pred CCCCCcHHHHHHHhhhhhccCCccccCCCCCCChHHHHHHHHHHHHHhhccCCCCCCccccCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhHHHH
Q psy14226 216 PKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAE 295 (532)
Q Consensus 216 ~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 295 (532)
++|||++|++|+++|+++||+++|+||||+|||++|+++|||+++||+
T Consensus 81 ~~~Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~-------------------------------- 128 (287)
T cd03346 81 PTHACREYLKNLPLLEKHCGYREDNIPQLEDVSRFLKERTGFTIRPVA-------------------------------- 128 (287)
T ss_pred hccccHHHHHHHHHHHhccCCCcCCCCCHHHHHHHHHhccCCEEEecC--------------------------------
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCCCCChhHHHHH
Q psy14226 296 SAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375 (532)
Q Consensus 296 ~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~l~~p~fA~f~ 375 (532)
||||+++||++||+|||||||||||+++|+||||||||||++||||||+||+||+|+
T Consensus 129 -----------------------Gli~~~~Ff~~LA~r~Fp~t~~IR~~~~~~YtpEPDifHEl~GHvPlLadp~FA~f~ 185 (287)
T cd03346 129 -----------------------GYLSPRDFLAGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLADPSFAQFS 185 (287)
T ss_pred -----------------------CcCCHHHHHHHHhcCcccceeeecCccccCCCCCCchHHHHhccchhhcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccccccCCCCc
Q psy14226 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQEYQ 455 (532)
Q Consensus 376 q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q 455 (532)
|+||++|++|+++++++|+||||||||||||+++|++||||||||||+||+.||||++|+++||||+.+++|+|+|++||
T Consensus 186 q~~G~~~l~a~~~~i~~LarlYWfTVEFGLi~e~~~lkaYGAGiLSS~gE~~~als~~~~~~pfd~~~~~~t~Y~i~~~Q 265 (287)
T cd03346 186 QEIGLASLGASDEDIQKLATCYFFTVEFGLCKQDGQLKVYGAGLLSSIGELKHALSGEAKVKPFDPKVTCKQECLITTFQ 265 (287)
T ss_pred HHHHHHhcCCCHHHHHHHhHhhhhhcccccccCCCceeEeccchhcCHHHHHHHccCCCccCCCCHHHHhCCCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCHHHHHHHHHHHHHh
Q psy14226 456 PIYFVAESFEDAKEKFRRWVST 477 (532)
Q Consensus 456 ~~yFv~~sfe~~~~~~~~~~~~ 477 (532)
|+|||++||++|+++||+|+++
T Consensus 266 p~YFv~~Sfe~l~~~l~~f~~~ 287 (287)
T cd03346 266 EAYFVSESFEEAKEKMREFAKT 287 (287)
T ss_pred CceEEeCCHHHHHHHHHHHhcC
Confidence 9999999999999999999975
No 9
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=100.00 E-value=2.7e-95 Score=725.50 Aligned_cols=247 Identities=39% Similarity=0.687 Sum_probs=240.1
Q ss_pred ChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHh
Q psy14226 169 DQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEM 247 (532)
Q Consensus 169 D~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~v 247 (532)
+++||+||..++++|.+|+ |+| +++||++||+||++||++|++++|++||++|++|+++|+ ++.|+||||+||
T Consensus 1 ~~~~~~~r~~~~~~a~~y~~~q~--~~~YT~~e~~~W~~l~~r~~~~~~~~Ac~~yl~gl~~L~----l~~d~IPql~~i 74 (275)
T PRK11913 1 DAAYRARRDAGMEKAADYTADQP--WIDYTAEEHAIWQTLYERQLALLPGRACDEFLEGLEALG----LPKDRIPQLDEI 74 (275)
T ss_pred ChhHhhhhhhHHHHHHhccCCCC--cccCCHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHcC----CCCCCCCCHHHH
Confidence 5789999999999999999 777 999999999999999999999999999999999999994 899999999999
Q ss_pred hHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHH
Q psy14226 248 SNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFL 327 (532)
Q Consensus 248 s~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl 327 (532)
|++|++.|||+++||+ ||||+++||
T Consensus 75 n~~L~~~TGw~~~pV~-------------------------------------------------------Glip~~~Ff 99 (275)
T PRK11913 75 NRVLQAATGWQVVPVP-------------------------------------------------------GLIPFDVFF 99 (275)
T ss_pred HHHHHhhcCCEEEecC-------------------------------------------------------ccCCHHHHH
Confidence 9999999999999999 999999999
Q ss_pred HHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCCCCChhHHHHHHHHhhhhcCCCHHHHH-HHhhhheeeeEeeee
Q psy14226 328 ASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDEEIE-KLSTVYWFTVEFGLC 406 (532)
Q Consensus 328 ~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~a~~~~~~-~l~~~yWfTvEfGL~ 406 (532)
++||+|+|||||||||+++|+||||||||||++||||||+||.||+|+|+||+++++|+++++. +|+||||||||||||
T Consensus 100 ~~LA~r~Fp~t~~IR~~~~~~YtpEPDifHevfGHvPmL~~p~FAdf~q~~G~~~l~a~~~~~~~~LarlyWfTVEFGLi 179 (275)
T PRK11913 100 ELLANRRFPVATFIRRPEELDYLQEPDIFHDVFGHVPLLTNPVFADFMQAYGKLGLRASKEGRLEFLARLYWFTVEFGLI 179 (275)
T ss_pred HHHhcCccceeeeecCccccCCCCCCchHHHHhccchhhcCHHHHHHHHHHHHHHhCcChhhHHHHHhhheeeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988877 999999999999999
Q ss_pred ecCCceeEeccccccchhhhhhhc-CCCCccccCCccccccccccCCCCccceeeeCCHHHHHHHHH-HHHH
Q psy14226 407 KENGEVKAYGAGLLSSYGELLHAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFR-RWVS 476 (532)
Q Consensus 407 ~e~g~~kayGAGlLSS~gE~~~~l-s~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~-~~~~ 476 (532)
+++|++||||||||||+||+.||| |++|+++||||+.+++|+|+|++|||+|||++||++|.+.+. .|..
T Consensus 180 ~e~~~lk~YGAGiLSS~gE~~~al~s~~p~~~pfd~~~v~~t~Y~i~~~Qp~YFvi~sf~~L~~~~~~d~~~ 251 (275)
T PRK11913 180 RTPGGLRIYGAGILSSPGETLYALESDSPNRRPFDLERVMRTPYRIDIFQPTYFVIDSFEQLFDIAEPDFMA 251 (275)
T ss_pred ccCCceeEeechhhcCHHHHHHHhcCCCCeeecCCHHHHhCCCCCCCCcCCceEEeCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999999999998 4443
No 10
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=100.00 E-value=1.6e-93 Score=696.98 Aligned_cols=223 Identities=37% Similarity=0.688 Sum_probs=219.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccch
Q psy14226 188 GDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLT 267 (532)
Q Consensus 188 g~~ip~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~ 267 (532)
|+|+|+++||++||+||++||++|+++++++||++|++|+++|+ ++.|+||||+|||++|++.|||+++||+
T Consensus 3 ~~~~~~~~YT~~e~~~W~~l~~r~~~~~~~~Ac~~yl~gl~~L~----l~~d~IPql~~vn~~L~~~TGw~~~pV~---- 74 (228)
T cd03348 3 PDEQGQIDYTPEEHAVWRTLYERQAKLLPGRACDAFLEGLEKLG----LPTDRIPDFADVSERLKAATGWTVVAVP---- 74 (228)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHcC----CCCCCCCCHHHHHHHHHhccCCEEEecC----
Confidence 68999999999999999999999999999999999999999996 7999999999999999999999999999
Q ss_pred hhhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCC
Q psy14226 268 ARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTP 347 (532)
Q Consensus 268 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~ 347 (532)
||||+++||++||+|+|||||||||+++|
T Consensus 75 ---------------------------------------------------Glip~~~Ff~~LA~r~Fp~t~~iR~~~~~ 103 (228)
T cd03348 75 ---------------------------------------------------GLIPDDEFFEHLANRRFPVTNFIRRPEEL 103 (228)
T ss_pred ---------------------------------------------------CcCCHHHHHHHHhcCCCceeeeecCcccc
Confidence 99999999999999999999999999999
Q ss_pred CCCCCchhhHhhhCCCCCCCChhHHHHHHHHhhhhcCCCH-HHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhh
Q psy14226 348 FHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASD-EEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGEL 426 (532)
Q Consensus 348 ~ytpePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~a~~-~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~ 426 (532)
+||||||||||++||||||+||.||+|+|+||++|++|++ +++++|+||||||||||||+++|++||||||||||+||+
T Consensus 104 ~YtpEPDifHe~fGHvPmL~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTVEFGLi~e~~~lk~YGAGiLSS~gE~ 183 (228)
T cd03348 104 DYLQEPDIFHDIFGHVPMLTNPVFADFMQAYGKGGLKATGLEDRALLARLYWYTVEFGLIQEPGGLRIYGAGILSSPGET 183 (228)
T ss_pred CCCCCcHHHHHHhcccHhhcCHHHHHHHHHHHHHHhCCCCHHHHHHHhHhhhhhccccccccCCceeEeccchhcCHHHH
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred hhhcCC-CCccccCCccccccccccCCCCccceeeeCCHHHHHH
Q psy14226 427 LHAISD-KPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKE 469 (532)
Q Consensus 427 ~~~ls~-~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~ 469 (532)
.|||++ +|+++||||+++|+|+|+|++|||+|||++||++|.+
T Consensus 184 ~~al~~~~~~~~~fd~~~v~~t~Y~i~~~Qp~YFv~~sf~~L~~ 227 (228)
T cd03348 184 LYALESPDPNRIPFDLERVMRTPYRIDSFQPTYFVIDSFEQLYD 227 (228)
T ss_pred HHHcCCCCCcccCCCHHHHhCCCCCCCCcCCceEEeCCHHHHhh
Confidence 999987 8999999999999999999999999999999999965
No 11
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=100.00 E-value=1.1e-92 Score=688.76 Aligned_cols=220 Identities=62% Similarity=1.046 Sum_probs=216.3
Q ss_pred CCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhh
Q psy14226 192 PHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDF 271 (532)
Q Consensus 192 p~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f 271 (532)
|+++||++||+||++||++|++++|++||++|++|+++|+ ++.|+||||+|||++|++.|||+++||+
T Consensus 1 ~~~~YT~~e~~~W~~l~~r~~~~~~~~Ac~~yl~gl~~l~----l~~d~IPql~~in~~L~~~TGw~~~pV~-------- 68 (221)
T cd00361 1 PRVDYTEEEHATWRTLYRRLKKLLPTHACREYLEGLELLG----LPEDRIPQLEDVSEFLKALTGWTLVPVA-------- 68 (221)
T ss_pred CcCcCCHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHcC----CCCCCCCCHHHHHHHHHhhcCCEEEecC--------
Confidence 6899999999999999999999999999999999999997 7999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCC
Q psy14226 272 LANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTV 351 (532)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytp 351 (532)
||||+++||++||+|+|||||||||+++|+|||
T Consensus 69 -----------------------------------------------gli~~~~Ff~~LA~r~Fp~t~~iR~~~~~~Ytp 101 (221)
T cd00361 69 -----------------------------------------------GLISPRDFFALLAFRVFPVTQYIRHPEEPDYTP 101 (221)
T ss_pred -----------------------------------------------CcCCHHHHHHHHhcCCCceeeeecCcCCCCCCC
Confidence 999999999999999999999999999999999
Q ss_pred CchhhHhhhCCCCCCCChhHHHHHHHHhhhhcCCCH-HHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhc
Q psy14226 352 EPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASD-EEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAI 430 (532)
Q Consensus 352 ePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~a~~-~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~l 430 (532)
|||||||++||||||+||.||+|+|+||+++++|++ +++++|+||||||||||||+++|++||||||||||+||+.||+
T Consensus 102 EPDifHe~~GH~P~L~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTVEFGLi~e~~~lk~YGAGiLSS~gE~~~~l 181 (221)
T cd00361 102 EPDIFHELFGHVPLLADPSFADFSQEYGLASLGASDLEEIEKLARLYWFTVEFGLIKEDGELKAYGAGLLSSYGELQHAL 181 (221)
T ss_pred CChhHHHHhccchhhcCHHHHHHHHHHHHHHhCcCCHHHHHHHHHhhhhhcccccccCCCceeEeechhhcCHHHHHHHc
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCccccccccccCCCCccceeeeCCHHHHHHH
Q psy14226 431 SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEK 470 (532)
Q Consensus 431 s~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~ 470 (532)
+++|+++||||+++++|+|+|++|||+|||++||++|+++
T Consensus 182 ~~~~~~~~fd~~~v~~t~Y~i~~~Qp~yFvi~sf~~l~~~ 221 (221)
T cd00361 182 SDKPKRIPFDPERVARTPYDITSFQPTYFVIESFEQLKEK 221 (221)
T ss_pred cCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHhhC
Confidence 9889999999999999999999999999999999999864
No 12
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=100.00 E-value=1.2e-91 Score=690.30 Aligned_cols=225 Identities=35% Similarity=0.634 Sum_probs=220.2
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchh
Q psy14226 189 DPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTA 268 (532)
Q Consensus 189 ~~ip~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~ 268 (532)
+++|+++||++||+||++||++|+++++++||++|++|+++| |++.|+||||+|||++|++.|||+++||+
T Consensus 4 ~~q~~~~YT~~e~~~W~~l~~r~~~~~~~~Ac~~yl~gl~~l----gl~~d~IPql~~vn~~L~~~TGw~~~pV~----- 74 (248)
T TIGR01267 4 DDQGFDHYSEEEHAVWNTLITRQLKLIEGRACQEYLDGIEQL----GLPHDRIPDFDEINRKLQATTGWRIAAVP----- 74 (248)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHc----CCCCCCCCCHHHHHHHHHhccCCEEEecC-----
Confidence 689999999999999999999999999999999999999999 48999999999999999999999999999
Q ss_pred hhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCC
Q psy14226 269 RDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPF 348 (532)
Q Consensus 269 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ 348 (532)
||||+++||++||+|+|||||||||+++|+
T Consensus 75 --------------------------------------------------Gli~~~~Ff~~LA~r~Fp~t~~iR~~~~~~ 104 (248)
T TIGR01267 75 --------------------------------------------------GLIPFQTFFEHLANRRFPVTTWLRTPEELD 104 (248)
T ss_pred --------------------------------------------------CcCCHHHHHHHHhcCccceeeeecCccccC
Confidence 999999999999999999999999999999
Q ss_pred CCCCchhhHhhhCCCCCCCChhHHHHHHHHhhhhcCCCHH-HHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhh
Q psy14226 349 HTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDE-EIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELL 427 (532)
Q Consensus 349 ytpePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~a~~~-~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~ 427 (532)
||||||||||++||||||+||+||+|+|+||+++++|+++ ++++|+||||||||||||+++|++||||||||||+||+.
T Consensus 105 YtpEPDifHe~fGH~P~L~~P~FA~f~q~~G~~~l~a~~~~~~~~LarlyWfTVEFGLi~e~~~lr~YGAGiLSS~gE~~ 184 (248)
T TIGR01267 105 YLQEPDIFHDIFGHVPLLTNPVFADFTHTYGKLGLKASALGRVEMLARLYWYTIEFGLVETDQGKRIYGAGILSSPKETV 184 (248)
T ss_pred CCCCchHHHHHhccccccCChHHHHHHHHHHHHHhCCCchHHHHHHhhhheeeeeccccccCCceeEecchhhcCHHHHH
Confidence 9999999999999999999999999999999999999976 688999999999999999999999999999999999999
Q ss_pred hhc-CCCCccccCCccccccccccCCCCccceeeeCCHHHHHHHHH
Q psy14226 428 HAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFR 472 (532)
Q Consensus 428 ~~l-s~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~ 472 (532)
||| |++|+++||||+++++|+|+|++|||+|||++||++|.+.+.
T Consensus 185 ~al~s~~p~~~pfd~~~v~~t~Y~i~~~Qp~YFvi~sf~~L~~~~~ 230 (248)
T TIGR01267 185 YSLESDEPLHVAFDLLEAMRTPYRIDIFQPLYFVLPSFKRLFDAAQ 230 (248)
T ss_pred HHhcCCCCcccCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHHHHH
Confidence 999 899999999999999999999999999999999999988776
No 13
>PRK14056 phenylalanine 4-monooxygenase; Provisional
Probab=100.00 E-value=6.2e-83 Score=678.39 Aligned_cols=231 Identities=30% Similarity=0.503 Sum_probs=221.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchh
Q psy14226 189 DPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTA 268 (532)
Q Consensus 189 ~~ip~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~ 268 (532)
.++++++||++||+|||+||++|+++++++||++|++|++.+ |++.|+||||++||++|++ |||+++||+
T Consensus 14 ~~Q~y~~YT~~ehavWr~v~~r~~~~l~~~Ac~~YL~GL~~l----gl~~d~IPql~emN~~L~~-tGW~~vpV~----- 83 (578)
T PRK14056 14 SPQHYDQYTPVDHAVWRYVMRQNHSFLKDVAHPAYLNGLQST----GINIERIPKVEEMNECLAE-IGWGAVAVD----- 83 (578)
T ss_pred cCCChhhCCHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHc----CCCccCCCCHHHHHHHHHH-cCCEEEecc-----
Confidence 488999999999999999999999999999999999999755 5899999999999999999 899999999
Q ss_pred hhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCC
Q psy14226 269 RDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPF 348 (532)
Q Consensus 269 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ 348 (532)
||||+++||++||+|||||||||||+++|+
T Consensus 84 --------------------------------------------------GlIp~~~Ffe~LA~rvFpit~~IR~~e~i~ 113 (578)
T PRK14056 84 --------------------------------------------------GFIPPVAFFEFQGHGVLPIATDIRKVENIE 113 (578)
T ss_pred --------------------------------------------------ccCCHHHHHHHHhcCeeceeeeeccccccC
Confidence 999999999999999999999999999999
Q ss_pred CCCCchhhHhhhCCCCCCCChhHHHHHHHHhhhhcC-------------------------CCHHHH-------------
Q psy14226 349 HTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLG-------------------------ASDEEI------------- 390 (532)
Q Consensus 349 ytpePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~-------------------------a~~~~~------------- 390 (532)
||||||||||++||||||+||+||+|+|+||+++++ +++++|
T Consensus 114 YtPEPDIfHE~~GH~P~LadP~fAdf~q~~G~iG~kAi~~~~d~~~y~Air~lsi~KEs~~as~e~i~~AE~~~~~~~~~ 193 (578)
T PRK14056 114 YTPAPDIIHEAAGHAPILADPTYAEYLRRFGEIGAKAISSKEDHDVFEAVRTLSIVKESPTSTPEEVAAAENRVIEKQNL 193 (578)
T ss_pred CCCCCchhhhhhccchhhcCHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhhhhcccccCCchHhhhhhhhhhhhhhcc
Confidence 999999999999999999999999999999997554 455554
Q ss_pred -------HHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccccccCCCCccceeeeCC
Q psy14226 391 -------EKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQEYQPIYFVAES 463 (532)
Q Consensus 391 -------~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~s 463 (532)
++|+||||||||||||+++|++||||||||||+||+.||++++|+++||||+.+++|+|+|++|||+|||++|
T Consensus 194 ~~~~Se~~~LaRLyWfTVEFGLI~e~~~lKiYGAGLLSS~GE~~~~lsd~~~k~pfd~~~v~~t~Y~It~~Qp~yFV~~s 273 (578)
T PRK14056 194 VSGLSEAEQISRLFWWTVEYGLIGTLDNPKIYGAGLLSSVGESKHCLTDAVEKVPFSIEACTSTTYDITKMQPQLFVCPD 273 (578)
T ss_pred ccchHHHHHHhheeeeeeeeeeeccCCceeEecceeecCHHHHHHhccCCCccCCCCHHHHhCCCCCCCCcCCceEEeCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q psy14226 464 FEDAKEKFRRWVSTMS 479 (532)
Q Consensus 464 fe~~~~~~~~~~~~~~ 479 (532)
|++|.+++++|+++|.
T Consensus 274 fe~L~~~l~ef~~~m~ 289 (578)
T PRK14056 274 FEELSEVLEEFAETMA 289 (578)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999999986
No 14
>PRK14055 aromatic amino acid hydroxylase; Provisional
Probab=100.00 E-value=4.4e-80 Score=625.94 Aligned_cols=216 Identities=25% Similarity=0.413 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchh
Q psy14226 200 EYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTE 279 (532)
Q Consensus 200 e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~ 279 (532)
+|++|+.+|++|+++++++||++|++|++.|. ++.| +|+++|||++|++.|||+++||+
T Consensus 103 ~h~iW~~L~~RQl~ll~~~Ac~eYLeGl~~L~----L~~D-~~~L~eVn~~L~~~TGW~v~pVp---------------- 161 (362)
T PRK14055 103 NRNLWYRLLSSRFSLWKSYCPRFFLDYLEAFG----LLSD-FLDHQAVIKFFELETHFSYYPVS---------------- 161 (362)
T ss_pred cHHHHHHHHHHHHHHHhhhccHHHHHHHHhcC----CCcc-cCChHHHHHHHHhccCCEEEecC----------------
Confidence 79999999999999999999999999999996 7788 88899999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhh
Q psy14226 280 EEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHEL 359 (532)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~ 359 (532)
||||+++||++||+|+|||||||||+++|+||||||||||+
T Consensus 162 ---------------------------------------GLIp~~~Ff~~LA~R~FPvttyIR~~ee~dYtpEPDifHEv 202 (362)
T PRK14055 162 ---------------------------------------GFVAPHQYLSLLQDRYFPIASVMRTLDKDNFSLTPDLIHDL 202 (362)
T ss_pred ---------------------------------------CcCCHHHHHHHHhcCeeceeeeeccccccCCCCCchHHHHh
Confidence 99999999999999999999999999999999999999999
Q ss_pred hCCCCCCCChhHHHHHHHHhhhhcCC---------CHHHHH-------HHhhhheeeeEeeeeecCCceeEeccccccch
Q psy14226 360 LGHMPLLADPSFAQFSQEIGLASLGA---------SDEEIE-------KLSTVYWFTVEFGLCKENGEVKAYGAGLLSSY 423 (532)
Q Consensus 360 ~GH~P~l~~p~fA~f~q~~G~~~l~a---------~~~~~~-------~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~ 423 (532)
+||||||+||+||+|+|+||+++++| ++++++ .|+||||||||||||+++|++||||||||||+
T Consensus 203 fGHvPmLanP~FAdF~q~~G~~glkA~e~~~sL~~~ee~ie~~~~~l~~LaRLYWFTVEFGLI~e~g~lKiYGAGILSS~ 282 (362)
T PRK14055 203 LGHVPWLLHPSFSEFFINMGRLFTKVIEKVQALPSKKQRIQTLQSNLIAIVRCFWFTVESGLIENHEGRKAYGAVLISSP 282 (362)
T ss_pred hccchhhcCHHHHHHHHHHHHHHHHHhhhhhcccchHHHHHhhhhHHHHhhheeeeeeeeeeeccCCceeEecceeccCh
Confidence 99999999999999999999997666 344443 59999999999999999999999999999999
Q ss_pred hhhhhhcCCCCccccCCccccccccccCCCCccceeeeCCHHHHHHHHHHHH
Q psy14226 424 GELLHAISDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWV 475 (532)
Q Consensus 424 gE~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~~ 475 (532)
||+.|||++++.++||||+.+++|+|+|++|||+|||++||++|.+.+....
T Consensus 283 GEl~~aL~~~~~r~pFD~~~v~rTpY~Id~~Qp~YFVieSfe~L~e~~~~i~ 334 (362)
T PRK14055 283 QELGHAFIDNVRVLPLELDQIIRLPFNTSTPQETLFSIRHFDELVELTSKLE 334 (362)
T ss_pred HHHHHHhcCCCCcCCCCHHHHhcCCCCCCCCCCceEEeCCHHHHHHHHHHHH
Confidence 9999999889889999999999999999999999999999999988665543
No 15
>COG3186 Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-73 Score=556.37 Aligned_cols=224 Identities=35% Similarity=0.618 Sum_probs=217.0
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchh
Q psy14226 189 DPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTA 268 (532)
Q Consensus 189 ~~ip~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~ 268 (532)
...++++||..||++|++++.+|.++++++||++||+|+++|. ++.++|||+++||++|++.|||++.|||
T Consensus 35 ~d~~~~~y~~~eh~vW~tL~~rq~~l~~~rac~~fLdgle~lg----L~~~~ipd~~~in~~l~~~Tgw~v~~Vp----- 105 (291)
T COG3186 35 TDQGVIDYPQAEHAVWRTLIDRQTKLLKGRACQEFLDGLEALG----LPLSRIPDFDEINRVLQRETGWQVVAVP----- 105 (291)
T ss_pred cccccccCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHcC----CCcccCCCHHHHHHHHHHhcCcEEEecC-----
Confidence 5678999999999999999999999999999999999999995 7899999999999999999999999999
Q ss_pred hhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCC
Q psy14226 269 RDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPF 348 (532)
Q Consensus 269 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ 348 (532)
||||+..||++||+|.||.++|||.+++.+
T Consensus 106 --------------------------------------------------glvp~~~ff~lLanrrFPva~~mRt~~eld 135 (291)
T COG3186 106 --------------------------------------------------GLVPFDVFFDLLANRRFPVATFMRTPDELD 135 (291)
T ss_pred --------------------------------------------------ccCChHHHHHHHhhccCcHHHHhcCHhhcc
Confidence 999999999999999999999999999999
Q ss_pred CCCCchhhHhhhCCCCCCCChhHHHHHHHHhhhhcCCCHH-HHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhh
Q psy14226 349 HTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDE-EIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELL 427 (532)
Q Consensus 349 ytpePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~a~~~-~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~ 427 (532)
|+.|||+|||++||||||+||.||+|+|.+|+.+++|+.. ....|+||||||||||||.+.|++|||||||+||++|+.
T Consensus 136 ylqePD~fHdvfGHvP~Lt~P~FAdf~~~yG~lg~ka~~~~~~~~laRlyW~TvEfGLv~~~~g~kiYGagi~SSp~E~~ 215 (291)
T COG3186 136 YLQEPDIFHDVFGHVPMLTHPVFADFMQAYGKLGLKAIELGRLLMLARLYWYTVEFGLVETPGGLKIYGAGILSSPTELV 215 (291)
T ss_pred cccCccHHHHHhccCchhcCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhceeeccccceeecceeecCchhhh
Confidence 9999999999999999999999999999999999999864 566999999999999999999999999999999999999
Q ss_pred hhc-CCCCccccCCccccccccccCCCCccceeeeCCHHHHHHHH
Q psy14226 428 HAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKF 471 (532)
Q Consensus 428 ~~l-s~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~ 471 (532)
||+ |++|++.|||++.+|+|+|+|+++||+|||++||++|.+..
T Consensus 216 ~A~~~~~p~~~pfdl~~vmRtpyrid~~Q~~yFvi~~f~~L~elt 260 (291)
T COG3186 216 YALESDSPNRIPFDLEQVMRTPYRIDTFQPTYFVIPSFDQLFELT 260 (291)
T ss_pred hhhcCCCcccCCcCHHHHhhcccccCcccceeEeccCHHHHHHHH
Confidence 996 99999999999999999999999999999999999998765
No 16
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=99.82 E-value=4.5e-20 Score=151.11 Aligned_cols=73 Identities=34% Similarity=0.602 Sum_probs=68.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEe
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
|||+|+++|+||+|+++|+.|+.+|||||||||||++..+|+|.|||||+|+++++++++++|++.+ ..++++
T Consensus 1 tsl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~--~~~~~~ 73 (74)
T cd04904 1 TSLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVV--ADVNIL 73 (74)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhc--CeEEEc
Confidence 6899999999999999999999999999999999999999999999999998889999999999877 367764
No 17
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=99.78 E-value=4.3e-19 Score=179.06 Aligned_cols=79 Identities=10% Similarity=0.140 Sum_probs=75.0
Q ss_pred cCCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccEEE
Q psy14226 49 AIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGINL 126 (532)
Q Consensus 49 g~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~VkV 126 (532)
+..||||+|+++|+||+|+++|++|+.+|||||+|||||+++++|+|.||||++|+ ++.++++|++|++.+ ..+++
T Consensus 191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t--~~~ki 268 (279)
T COG0077 191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEIT--EFVKI 268 (279)
T ss_pred CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhhe--eEEEE
Confidence 34699999999999999999999999999999999999999999999999999996 578999999999998 48999
Q ss_pred ecc
Q psy14226 127 LTE 129 (532)
Q Consensus 127 LGs 129 (532)
||+
T Consensus 269 lGs 271 (279)
T COG0077 269 LGS 271 (279)
T ss_pred Eee
Confidence 999
No 18
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=6.7e-19 Score=151.00 Aligned_cols=71 Identities=23% Similarity=0.418 Sum_probs=66.5
Q ss_pred cCCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 49 AIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 49 g~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
+.+||||+|+++|+||+|+++|++|+++||||+||||||++...|+|.|||||+|+ ++.++++++.|++.-
T Consensus 11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI 82 (90)
T ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999999997 789999999998753
No 19
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=9.5e-19 Score=156.09 Aligned_cols=75 Identities=45% Similarity=0.719 Sum_probs=69.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEE
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINL 126 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkV 126 (532)
.+||||+|+++|+||+|+++|++|+.+|||||||||||++..+|+|.|||||+|+..++.++|+.|++.+. .+++
T Consensus 39 ~~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~--~~kv 113 (115)
T cd04930 39 PQKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAE--DVRL 113 (115)
T ss_pred cccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcC--eeEe
Confidence 45899999999999999999999999999999999999999999999999999987789999999998773 5554
No 20
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=7.1e-19 Score=145.63 Aligned_cols=68 Identities=25% Similarity=0.480 Sum_probs=65.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcC
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSS 120 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~ 120 (532)
||++|+++|+||+|+++|++|+.+||||+||||||++..+|+|.|||||+|+..+++.++++|++.+.
T Consensus 1 tsl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~~~~ 68 (74)
T cd04929 1 TSVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKREVA 68 (74)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999999998899999999998764
No 21
>PRK11899 prephenate dehydratase; Provisional
Probab=99.77 E-value=1.1e-18 Score=176.08 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=74.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccEEEe
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
.+||||+|+++|+||+|+++|++|+.+|||||+|||||+++++|+|.||||++|+ ++.++++|++|++.+ ..+|+|
T Consensus 192 ~~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~--~~~kvL 269 (279)
T PRK11899 192 PIVTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFS--EEVRIL 269 (279)
T ss_pred CceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhc--CcEEEe
Confidence 5699999999999999999999999999999999999999999999999999996 588999999999988 489999
Q ss_pred cc
Q psy14226 128 TE 129 (532)
Q Consensus 128 Gs 129 (532)
|+
T Consensus 270 Gs 271 (279)
T PRK11899 270 GV 271 (279)
T ss_pred ee
Confidence 99
No 22
>PRK11898 prephenate dehydratase; Provisional
Probab=99.72 E-value=1.6e-17 Score=167.49 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=74.9
Q ss_pred ccCCeEEEEEEeCCC-ccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccE
Q psy14226 48 SAIQTAALVLRMREG-MSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGI 124 (532)
Q Consensus 48 sg~dKTSLIFsL~dk-pGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~V 124 (532)
.+.+||||+|+++++ ||+|+++|++|+++|||||||||||+++++|+|.|||||+|+ +++++++|+.|++.+ ..+
T Consensus 192 ~~~~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~--~~~ 269 (283)
T PRK11898 192 TGGDKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALG--EDV 269 (283)
T ss_pred CCCCeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhc--CcE
Confidence 456799999999875 999999999999999999999999999999999999999997 458999999999988 489
Q ss_pred EEeccc
Q psy14226 125 NLLTEN 130 (532)
Q Consensus 125 kVLGs~ 130 (532)
++||++
T Consensus 270 k~LGsY 275 (283)
T PRK11898 270 KVLGSY 275 (283)
T ss_pred EEEEee
Confidence 999994
No 23
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=99.72 E-value=1.4e-17 Score=174.62 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=74.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccEEEe
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
.+||||+|+++|+||+|+++|++|+.+|||||+|||||+++++|+|.||||++|+ ++.++++|+.|++.+ ..+|+|
T Consensus 295 ~~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~--~~~kvL 372 (386)
T PRK10622 295 PAKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEIT--RSLKVL 372 (386)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhc--CcEEEe
Confidence 4699999999999999999999999999999999999999999999999999996 578999999999988 489999
Q ss_pred cc
Q psy14226 128 TE 129 (532)
Q Consensus 128 Gs 129 (532)
|+
T Consensus 373 Gs 374 (386)
T PRK10622 373 GC 374 (386)
T ss_pred ee
Confidence 99
No 24
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=99.71 E-value=5.3e-17 Score=131.53 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=68.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccEEEec
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
|++|+++|+||+|+++|+.|+++|+||++|||||+++..|+|.|||||+++ +.+++++++.|++.+ ..++++|
T Consensus 1 sl~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~--~~~~~lG 75 (75)
T cd04880 1 SLVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVT--EDVKVLG 75 (75)
T ss_pred CEEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhC--CeeEECC
Confidence 589999999999999999999999999999999999999999999999995 689999999999987 4899887
No 25
>PLN02317 arogenate dehydratase
Probab=99.70 E-value=4.8e-17 Score=170.37 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCC--------------ceEEEEEEEecC--cHHHHHHHH
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAG--------------IQFDVLVKVDMT--RRDLLNLIR 113 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~--------------~eY~FFVD~Eg~--d~~V~eaLe 113 (532)
.+||||+|+++|+||+|+++|++|+.+|||||||||||++..+ |+|.|||||+++ +++++++|+
T Consensus 281 ~~KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~ 360 (382)
T PLN02317 281 PFKTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALA 360 (382)
T ss_pred CccEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHH
Confidence 5599999999999999999999999999999999999999874 999999999997 688999999
Q ss_pred HHHhhcCCccEEEeccc
Q psy14226 114 SLRQSSSLGGINLLTEN 130 (532)
Q Consensus 114 ~Lk~~~~~~~VkVLGs~ 130 (532)
+|++.+. .+++||++
T Consensus 361 ~L~~~~~--~lrvLGsY 375 (382)
T PLN02317 361 HLQEFAT--FLRVLGSY 375 (382)
T ss_pred HHHHhcC--eEEEEeee
Confidence 9999884 89999993
No 26
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=99.65 E-value=8.1e-16 Score=126.44 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=72.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccEEEecc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGINLLTE 129 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~VkVLGs 129 (532)
|+|++|.++|+||+|+++|+.|+++||||++|+|||.+...|+|.||||++++ +++++++++.|+..+ ..+++||+
T Consensus 1 ~~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~--~~~~~lG~ 78 (80)
T cd04905 1 KTSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLT--EFVKVLGS 78 (80)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhC--CeEEEeee
Confidence 58999999999999999999999999999999999999899999999999997 688999999999987 59999998
Q ss_pred c
Q psy14226 130 N 130 (532)
Q Consensus 130 ~ 130 (532)
+
T Consensus 79 y 79 (80)
T cd04905 79 Y 79 (80)
T ss_pred e
Confidence 3
No 27
>KOG2797|consensus
Probab=99.05 E-value=2.8e-10 Score=116.56 Aligned_cols=80 Identities=11% Similarity=0.195 Sum_probs=70.5
Q ss_pred ccCCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCC---------CCCceEEEEEEEecC--cHHHHHHHHHHH
Q psy14226 48 SAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSK---------MAGIQFDVLVKVDMT--RRDLLNLIRSLR 116 (532)
Q Consensus 48 sg~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk---------~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk 116 (532)
.+.-||||+|...+.||.|.++|++|+-+.||||+|||||-. .+.|+|.||||+++. ++..++++.++.
T Consensus 277 ~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~~p~r~v~~~k~f~ylFyidfeasmae~~aq~al~~~~ 356 (377)
T KOG2797|consen 277 DRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHNRPLRVVDDSKNFEYLFYIDFEASMAEPRAQNALGEVQ 356 (377)
T ss_pred CccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccCCCcccccccccccEEEEEEEEeccCcHHHHHHHHHHH
Confidence 446699999998889999999999999999999999999933 356899999999985 678899999998
Q ss_pred hhcCCccEEEecc
Q psy14226 117 QSSSLGGINLLTE 129 (532)
Q Consensus 117 ~~~~~~~VkVLGs 129 (532)
..++ .+++||+
T Consensus 357 e~~s--flrvlGs 367 (377)
T KOG2797|consen 357 EFTS--FLRVLGS 367 (377)
T ss_pred HHHH--HHHHhcC
Confidence 8774 7899998
No 28
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.38 E-value=7.3e-07 Score=94.00 Aligned_cols=63 Identities=11% Similarity=0.157 Sum_probs=53.6
Q ss_pred CeEEEEEEeC-CCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc--HHHHHHHHHH
Q psy14226 51 QTAALVLRMR-EGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR--RDLLNLIRSL 115 (532)
Q Consensus 51 dKTSLIFsL~-dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d--~~V~eaLe~L 115 (532)
.-++|.|+++ |+||+|+++|++|+.+||||++||| ++.+.|+|-|||||++.+ ..+..+-.++
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies--~~~r~~~y~f~i~~~~~~~~~~~~~~~~~~ 359 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS--SRTPAGELHFRIGFEPGSDRAALARAAAEI 359 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE--ecccCceEEEEEEEeccccHHHHHHHHhhh
Confidence 4689999996 9999999999999999999999999 888999999999999853 3344444444
No 29
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.12 E-value=1.2e-05 Score=61.90 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=51.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
+.|.+.++|+||.|+++++.|+++|||+.++.+++.+.. ...+++....+.....+++++|++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG--VGIVFIVIVVDEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST--TEEEEEEEEEEGHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC--ceEEEEEEECCCCCHHHHHHHHHcc
Confidence 467788999999999999999999999999999998876 4455555555556666777777653
No 30
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.06 E-value=2.3e-05 Score=60.55 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=54.6
Q ss_pred EEEeCCCccHHHHHHHHHHHCCcceeeeecccCCC--CCceEEEEEEEecCc-HHHHHHHHHHHhhc
Q psy14226 56 VLRMREGMSSLARILKTIEVFKGTVVHLETRVSKM--AGIQFDVLVKVDMTR-RDLLNLIRSLRQSS 119 (532)
Q Consensus 56 IFsL~dkpGALaeILkvFa~~gINLThIESRPSk~--~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~ 119 (532)
.+.++|+||+|+++++.++.+|+|++.|.+++.+. ..+.+.+++.++..+ ..+..+++.|+..+
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g 68 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAG 68 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999998653 356788888888765 77889999998765
No 31
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.56 E-value=0.00061 Score=54.39 Aligned_cols=73 Identities=21% Similarity=0.411 Sum_probs=54.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccEEEec
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
+|.+...|++|.|+++++.+++.|+|+..|.+.....+ ...+.+.++.. +..+.++++.|++...+.+++++|
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~--~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~~ 76 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHG--RANVTISIDTSTMNGDIDELLEELREIDGVEKVELVG 76 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCC--eEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEeC
Confidence 57778899999999999999999999999987532222 33444444443 348899999999877666777765
No 32
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0012 Score=50.85 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=44.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
+.+.++|+||.|+++++.|+++|+|+.++...+... .+...+.+.++. ...+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~-~~~~~v~~~ve~----~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKK-GGKALLIFRTED----IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCC-CCeEEEEEEeCC----HHHHHHHHHHC
Confidence 456789999999999999999999999988766542 344556666664 45677777664
No 33
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.0027 Score=49.05 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=49.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
++.+..+|++|.|+++++.|+++++|+..+...+.. .+...+.+++++. ..+.++++.|++..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~--~~~~~~~i~~~~~-~~~~~~~~~L~~~~ 64 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER--EGKARIYMELEGV-GDIEELVEELRSLP 64 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC--CCeEEEEEEEecc-ccHHHHHHHHhCCC
Confidence 466788999999999999999999999988875532 3345566777765 46667888887765
No 34
>PRK04435 hypothetical protein; Provisional
Probab=97.15 E-value=0.0028 Score=59.04 Aligned_cols=80 Identities=14% Similarity=0.276 Sum_probs=62.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEecc
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLTE 129 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLGs 129 (532)
..+++|.+.+.|+||.|+++++.++++|+|+..|..+-...+.....|-|+.......+.++++.|+....+..++++|.
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~~ 146 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIGM 146 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 45789999999999999999999999999999997642222233455555554444589999999998877778888885
No 35
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0023 Score=51.50 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=45.3
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhh
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQS 118 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~ 118 (532)
+.+.++|+||+|+++++.++++|+|+..|..-+.....+....+|.+++. ...++.+++.|+..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCc
Confidence 45678999999999999999999999999766654333334445544432 22366777777543
No 36
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.09 E-value=0.0029 Score=44.14 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=44.7
Q ss_pred EEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHH
Q psy14226 56 VLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSL 115 (532)
Q Consensus 56 IFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~L 115 (532)
.+..++++|.|.++++.|+.+++|+.++.+++... .+...+++.++..+ ....+++.|
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGD-GGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCC-CCeEEEEEEEechH-HHHHHHHHh
Confidence 45678899999999999999999999999877643 55677778777643 455555554
No 37
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.06 E-value=0.0034 Score=48.22 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=49.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
+|.+...+++|.|.++++.|+++|+|+..+...+.+. .....+.+.++..+..+..+++.|++..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 66 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTED-PGISRITIVVEGDDDVIEQIVKQLNKLV 66 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCC-CCeEEEEEEEECCHHHHHHHHHHHhCCc
Confidence 5777889999999999999999999999998876421 2233444444432278899999998765
No 38
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0068 Score=47.97 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=46.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
+.+.+.++|+||.|.++++.|+++|+|+.++..-+... .....+.|.+++.+. ..+++.|+..
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~-~~~~~v~i~v~~~~~--~~~~~~L~~~ 64 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKE-EDNKILVFRVQTMNP--RPIIEDLRRA 64 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCC-CCeEEEEEEEecCCH--HHHHHHHHHC
Confidence 35677899999999999999999999999997655432 334456666666443 2677777654
No 39
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.94 E-value=0.0039 Score=51.06 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=53.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
.+.|-+...|++|.|+++.+.+++.|+|+..+..+..+. .+...+.++++.. .+.+..+++.|++..
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~-~~~~~~~l~v~V~d~~~L~~ii~~L~~i~ 73 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKD-DGTARITLTVEVKDLEHLNQIIRKLRQIP 73 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--E-TTEEEEEEEEEESSHHHHHHHHHHHCTST
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEecc-CCEEEEEEEEEECCHHHHHHHHHHHHCCC
Confidence 578888899999999999999999999999999998753 3456677777765 478999999998764
No 40
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.004 Score=49.24 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=45.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCC-CceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMA-GIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~-~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
++.+.++++||.|+++++.|+++|+|+..+...+.... .....+.++.. ....++++.|+..
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~---~~~~~~~~~L~~~ 65 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ---EDRERAKEILKEA 65 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH---HHHHHHHHHHHHc
Confidence 46678899999999999999999999999977665433 33444444432 2556777777664
No 41
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.73 E-value=0.013 Score=49.77 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=55.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
-+|.+-+.|+||.|.+++..|+.+|.|+..|-.-|+. .++-..+-|-+.+++..+..+.+.|++..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te-~~~~sriti~~~~~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERD-TSGVSEMKLTAVCTENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccC-CCCeeEEEEEEECCHHHHHHHHHHHhCCc
Confidence 3566778899999999999999999999999988876 44456777777888888899999998764
No 42
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.70 E-value=0.0069 Score=46.27 Aligned_cols=63 Identities=8% Similarity=0.098 Sum_probs=46.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcC
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSS 120 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~ 120 (532)
+.+...+++|.|+++++.|+++|+|+.++.+.+... .+.....++++.. ...++++.|+....
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~-~~~~~~~~~v~~~--~~~~l~~~l~~~~~ 64 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEK-GGIAYMVLDVDSP--VPEEVLEELKALPG 64 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCC-CCEEEEEEEcCCC--CCHHHHHHHHcCCC
Confidence 566788999999999999999999999999877532 2234445555432 45678888876543
No 43
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.01 Score=45.54 Aligned_cols=62 Identities=11% Similarity=0.196 Sum_probs=44.8
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
|.+..+|++|.|.++++.|+++|+|+..+...+... ...-...+.++.. .+.++++.|++..
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~i~i~v~~~--~~~~~i~~l~~~~ 63 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEK-GDQALMVIEVDQP--IDEEVIEEIKKIP 63 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccC-CCeEEEEEEeCCC--CCHHHHHHHHcCC
Confidence 566788999999999999999999999998766422 2222233555443 5667888887654
No 44
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.58 E-value=0.011 Score=46.51 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=49.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEe
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
+++..+++||.|+++++.|+++|+|+..+.+.+.. ........+++++..+ .++++.|+....+..++++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~i~v~~~~~--~~~~~~l~~~~~v~~v~~~ 71 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDE-PGGEALMVLSVDEPVP--DEVLEELRALPGILSAKVV 71 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccC-CCCEEEEEEEeCCCCC--HHHHHHHHcCCCccEEEEE
Confidence 46678999999999999999999999988876653 2334556667776432 2566666655433455544
No 45
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.58 E-value=0.0092 Score=47.97 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=47.4
Q ss_pred EEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHHHHHHHHHHhhc
Q psy14226 56 VLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDLLNLIRSLRQSS 119 (532)
Q Consensus 56 IFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~ 119 (532)
.+.++++||+|.++++.++. |.|++.|.=|... ...-.+++.++..+ +.+.++++.|+...
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~--~~~~~v~v~ie~~~~~~~~~i~~~L~~~G 63 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQG--GDEARVLVGIQVPDREDLAELKERLEALG 63 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC--CCceEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 46789999999999999999 9999999877765 33344556666644 67888888887754
No 46
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.53 E-value=0.0074 Score=47.26 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=47.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEE
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGIN 125 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~Vk 125 (532)
+++...|+||.|+++++.++++|+|+..+.+++.. +.-...++++.. .+.++++.|++...+..++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~---~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~ 67 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG---EIGYVVIDIDSE--VSEELLEALRAIPGTIRVR 67 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC---CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEE
Confidence 45677899999999999999999999999776532 233334455554 6668888888755433443
No 47
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.024 Score=45.21 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=50.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
|.+...++||.|+++.+.+++.|+|+.+++++... .+....-+.++.. .+.+..+++.|++..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~--~~~~~~~~~vev~~~~~l~~i~~~L~~i~ 65 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG--RDYTVRDITVDAPSEEHAETIVAAVRALP 65 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec--CCEEEEEEEEEcCCHHHHHHHHHHHhcCC
Confidence 56778999999999999999999999999987643 2344455666664 477888999998754
No 48
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.31 E-value=0.029 Score=53.56 Aligned_cols=74 Identities=8% Similarity=-0.002 Sum_probs=58.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEe
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
-+|.+.+.|+||.|+++...|+.+|+|+..+-.-|+. .++.+.+.+-+++++..+..+.+.|.+...+..+..+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te-~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~ 76 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTE-DPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDL 76 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecC-CCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEec
Confidence 3566778999999999999999999999999877773 3456778888888888899999999877543333333
No 49
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.30 E-value=0.021 Score=46.24 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=48.1
Q ss_pred CCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 61 EGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 61 dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
|+||.|.+++.+|..+|+|+..|..-|+. .++-+.+-+.+++++..+..+++.|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~-~~~~~riti~v~~~~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTE-DPGISRITIVVSGDDREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-S-STTEEEEEEEEES-CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecC-CCCEEEEEEEEeeCchhHHHHHHHHhccC
Confidence 57999999999999999999999998844 55578899999998888888999988764
No 50
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=96.28 E-value=0.02 Score=53.76 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=65.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeee-ecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEecc
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHL-ETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLTE 129 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThI-ESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLGs 129 (532)
...||.+.+.|++|.|+++|.+.++.++|+.-| ++-|..+.. .-...+|..+-+..+.+++++|++.-.+..|.++|+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~A-nvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivgs 149 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRA-NVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVGS 149 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCcee-eEEEEEEchhhhhhHHHHHHHHhcccceeEEEEeec
Confidence 467999999999999999999999999999777 788877554 456667777667889999999998766678888885
No 51
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.28 E-value=0.022 Score=45.25 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=40.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
+.+.++|+||.|+++++.|+++|+|+..+..-+... .-.+-+++ ++. ..+.+.|+..
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~--~~~--~~~~~~L~~~ 60 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE---FGILRLIV--SDP--DKAKEALKEA 60 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEE--CCH--HHHHHHHHHC
Confidence 556799999999999999999999999998766433 24444455 332 3455666554
No 52
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.032 Score=43.61 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=48.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEe-cCcHHHHHHHHHHHhhc
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVD-MTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~E-g~d~~V~eaLe~Lk~~~ 119 (532)
|.+...|++|.|.++++.|+++|+|+..+.+++... .+.-.+.+.++ .+...+.++++.|++..
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~i~~L~~~~ 67 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADG-GETAPVVIVTHETSEAALNAALAEIEALD 67 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCC-CCceeEEEEEccCCHHHHHHHHHHHHcCc
Confidence 456778999999999999999999999998876542 12233444443 35678899999998653
No 53
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.20 E-value=0.032 Score=47.01 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=46.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEec
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
.+.+.++++||+|.++|+.+. +.|++.+.=+-.........+-+++.+..+.++++++.|+.... .+..+.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~--~~~~~~ 73 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGY--EVVDLS 73 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCCC--CeEECC
Confidence 367889999999999999999 55666665544433333344444444324678888999987652 444444
No 54
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.10 E-value=0.043 Score=52.21 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=56.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEe
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
+|.+-+.|+||.|+++...|+.+|+|+..+-.-|+. .++...+.+-+++++..+..+.+.|.+...+..+..+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~-~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~ 75 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTE-DPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDL 75 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecC-CCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEec
Confidence 566778999999999999999999999999877773 3456667777778777888889999876543333333
No 55
>PRK08577 hypothetical protein; Provisional
Probab=96.00 E-value=0.058 Score=49.21 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=53.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEE--EEEecCcHHHHHHHHHHHhhcCCccEE
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVL--VKVDMTRRDLLNLIRSLRQSSSLGGIN 125 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FF--VD~Eg~d~~V~eaLe~Lk~~~~~~~Vk 125 (532)
..+.|.+...|++|.|+++++.|+++++|+..+.++...... ..... +++...+..+.++++.|++...+..++
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~-~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~ 130 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGE-LAECVIIVDLSKSDIDLEELEEELKKLEEVKEVE 130 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCC-EEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEE
Confidence 356788888999999999999999999999999887754222 23333 444433357888999998765433443
No 56
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=95.94 E-value=0.046 Score=44.43 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=50.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHHHHHHHHHHhhcC
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDLLNLIRSLRQSSS 120 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~~ 120 (532)
.|.+...|++|-|+++++.+++.|+|+..+++++. .+ .+++++..+ ..+..+++.|++...
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-----~~-i~l~i~v~~~~~L~~li~~L~~i~g 63 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-----GR-IYLNFPTIEFEKLQTLMPEIRRIDG 63 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-----Ce-EEEEeEecCHHHHHHHHHHHhCCCC
Confidence 35667789999999999999999999999999764 22 677777754 788999999987654
No 57
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.75 E-value=0.069 Score=45.28 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=49.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
|-+|.+.+.|+||.|.+++..|+.+|.|+..|---|+.. +.-...-+-++ ++..+..+.+.|.+.-
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~-~~~sriti~v~-~~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTD-AQNINIELTVA-SERPIDLLSSQLNKLV 68 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCC-CCEEEEEEEEC-CCchHHHHHHHHhcCc
Confidence 346777789999999999999999999999998888753 22333333343 5667778888887654
No 58
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.69 E-value=0.095 Score=38.48 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=46.1
Q ss_pred EEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 56 VLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 56 IFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
-+..++++|.|.++++.|+++++|+..+...... .....+.+.++.. ...+..+++.|+...
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 64 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDD--DGLATIRLTLEVRDLEHLARIMRKLRQIP 64 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC--CCEEEEEEEEEECCHHHHHHHHHHHhCCC
Confidence 3567899999999999999999999999887643 2223345566543 467888888887653
No 59
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=95.51 E-value=0.086 Score=51.03 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=56.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEec
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
-++.+...|+||.|.++...|+.+|+|+..+.+.|+... +...+-+.+.+++..+..+.+.|.+.+....|..+.
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~-~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~ 77 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQK-GISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDIT 77 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCC-CccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecC
Confidence 356667889999999999999999999999999886633 334677777776555777888887776433444443
No 60
>PRK08198 threonine dehydratase; Provisional
Probab=95.00 E-value=0.16 Score=53.81 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=53.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeeccc-CCC-CCceEEEEEEEecCc-HHHHHHHHHHHhhc
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRV-SKM-AGIQFDVLVKVDMTR-RDLLNLIRSLRQSS 119 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRP-Sk~-~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~ 119 (532)
...++.+.++|+||.|.++|+.+...|+|++.|.-++ .+. ..+...+.|.++..+ +.++++++.|+...
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~G 397 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDAG 397 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 4568999999999999999999999999999886644 332 234566777777643 56788999998764
No 61
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=94.84 E-value=0.11 Score=54.47 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=51.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecc-cCCC-CCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETR-VSKM-AGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESR-PSk~-~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
..++.+.++|+||.|.++++.++++|+|+++|.-+ ..+. ........|.++.. ....+++++.|+...
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~G 375 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDMG 375 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 45888899999999999999999999999999765 2122 22455566677664 456678888887654
No 62
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=94.76 E-value=0.24 Score=43.11 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=52.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEe-cCcHHHHHHHHHHHhhc
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVD-MTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~E-g~d~~V~eaLe~Lk~~~ 119 (532)
-+|.+-+.|+||.|+++-..|..+|+|+..|---|+.. ++=..+-|-++ +++..+..+.+.|++..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~-~~iSRmtivv~~~d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQ-PGISNMEIQVDIQDDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCC-CCceEEEEEEeCCCHHHHHHHHHHHhCCc
Confidence 34666678999999999999999999999998888753 33345556666 77788899999998765
No 63
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=94.73 E-value=0.22 Score=38.60 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=38.3
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEe
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVD 102 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~E 102 (532)
-|.+..++++|.|+++...|+.+|+|+.++....... .....|.|+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~ 49 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDS 49 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECC
Confidence 3567789999999999999999999999998877654 44455666653
No 64
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=94.54 E-value=0.09 Score=40.14 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=30.0
Q ss_pred EEEeCCCccHHHHHHHHHHHCCcceeeeecccCC
Q psy14226 56 VLRMREGMSSLARILKTIEVFKGTVVHLETRVSK 89 (532)
Q Consensus 56 IFsL~dkpGALaeILkvFa~~gINLThIESRPSk 89 (532)
.+.++|+||.|.++++.|.++|+|+..+...+..
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~ 35 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETR 35 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc
Confidence 3468899999999999999999999999877764
No 65
>PRK06382 threonine dehydratase; Provisional
Probab=94.38 E-value=0.19 Score=53.60 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=50.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecc-cC-CCCCceEEEEEEEecCc-HHHHHHHHHHHhhc
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETR-VS-KMAGIQFDVLVKVDMTR-RDLLNLIRSLRQSS 119 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESR-PS-k~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~ 119 (532)
.++.+.+.++|+||.|.++++.|.++|+|+++|+-. .. +.........|.++..+ ....++++.|+...
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~G 400 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREMG 400 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 467888899999999999999999999999999873 21 12233445556666643 34457888887654
No 66
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=94.04 E-value=0.43 Score=42.49 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=51.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcC
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSS 120 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~ 120 (532)
.+.+|.+-+.|+||.|+++-..|+.+|.|+..|-.=|+.... --.+.|-+. ++..+..+++.|++...
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~-iSRmtivv~-~~~~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGD-KSRIWLLVN-DDQRLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCC-ceEEEEEEc-CchHHHHHHHHHhCCcC
Confidence 355677778999999999999999999999999777765332 233444444 45788899999987754
No 67
>PRK00194 hypothetical protein; Validated
Probab=93.58 E-value=0.33 Score=40.61 Aligned_cols=36 Identities=6% Similarity=0.208 Sum_probs=31.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeeccc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRV 87 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRP 87 (532)
+..+.+.-+|+||-++++.+.|+++|+|+..+++.-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~ 38 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI 38 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh
Confidence 455666678999999999999999999999999874
No 68
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.76 E-value=0.47 Score=37.23 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=37.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEE
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKV 101 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~ 101 (532)
-+.+..+|++|.|+++.+.|+.+|+|+.++..++..+ ...-.|+|.-
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~f~i~~ 48 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE-RAEDVFYVTD 48 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC-EEEEEEEEEC
Confidence 3556778999999999999999999999999887653 3344566643
No 69
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.73 E-value=0.61 Score=39.55 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=42.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEEEEecC---c-HHHHHHHHHHHh
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLVKVDMT---R-RDLLNLIRSLRQ 117 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFVD~Eg~---d-~~V~eaLe~Lk~ 117 (532)
|=+..+|+||-|+++.+.|++.|+++. ||.|-- .+..-.=.||||.++. + +..+++-+.|..
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T-~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV-KGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc-ccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 446678999999999999999999996 777432 2222234599988773 3 334455555543
No 70
>PRK07334 threonine dehydratase; Provisional
Probab=92.49 E-value=0.52 Score=50.23 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=54.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccC-CC-CCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVS-KM-AGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPS-k~-~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
.+.|.+...|++|.|.++++.+++.++|+.++.++.. .. ........+.++.. .+.+.++++.|++..
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~g 396 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAAG 396 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999999999998754 11 22334455566654 578999999998864
No 71
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.45 E-value=0.71 Score=38.40 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=46.6
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec---CcHHHHHHHHHHHhhcCCccEEEe
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM---TRRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg---~d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
+++.+|.++++++.|+++|||+-+|-+ ....+.|-|+-.. .++.+++++++|++.+ .+.++
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~-----s~~~isftv~~~~~~~~~~~~~~l~~el~~~~---~v~~~ 74 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST-----SETNVTVSLDPDPNGLDPDVLDALLDDLNQIC---RVKII 74 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe-----CCCEEEEEEeCcccccchHHHHHHHHHHHhce---EEEEe
Confidence 456799999999999999999999965 1256777776554 2347889999998865 45553
No 72
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.38 E-value=0.73 Score=37.53 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=35.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEE
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLV 99 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFV 99 (532)
|-+.+..+|++|-|+++.+.|+.+|+|+......+.. ...-..|+|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~-~~~~d~f~v 47 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQG-DMAVNVFYV 47 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCC-CeEEEEEEE
Confidence 4567788999999999999999999999877665542 233344555
No 73
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=92.17 E-value=0.9 Score=36.83 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=41.5
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCC---CCceEEEEEEEecCc-HHHHHHHHHHHhhc
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKM---AGIQFDVLVKVDMTR-RDLLNLIRSLRQSS 119 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~---~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~ 119 (532)
+.+.-+|+||-++++-+.|+++|+|+..+++..... ....+..-+.+..+. ....++.+.|+..+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999999998755431 222333334444432 23444444444433
No 74
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=91.95 E-value=1.1 Score=48.18 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=53.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHHHHHHHHHHhhcCCccEEEec
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
....+.|.++++||+|.++|+.....+-|++++.-|... ....-...|.+|..+ +.++++++.|++... .++++.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~-~~~~~~v~v~iE~~~~~h~~~i~~~L~~~Gy--~~~~~~ 399 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKS-NRETGPALIGIELNDKEDFAGLLERMAAADI--HYEDIN 399 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecC-CCCeEEEEEEEEeCCHHHHHHHHHHHHHCCC--CeEECC
Confidence 366888999999999999999555555699999988632 223345667777654 677888888887652 444443
No 75
>PRK08526 threonine dehydratase; Provisional
Probab=91.89 E-value=0.95 Score=48.69 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=54.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeec-ccCCC-CCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLET-RVSKM-AGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIES-RPSk~-~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
.+..+.+.++++||+|.++++.+...+.|+++|+= |.... ..++-...|.+|.. .+.+.++++.|+...
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~g 396 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEKG 396 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 46788899999999999999999999999999987 54443 33455666777775 468889999997654
No 76
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=91.35 E-value=0.73 Score=43.00 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=49.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEeccc
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLTEN 130 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLGs~ 130 (532)
.-+.+.+.++||+|.+++++|.+++||+-.|.---++.. .-..++.++ .+.++++.|+.. .++++|..
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~--KAlli~r~e----d~d~~~~aLed~----gi~~~~~~ 137 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQ--KALLIVRVE----DIDRAIKALEDA----GIKLIGMK 137 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCc--eEEEEEEhh----HHHHHHHHHHHc----CCeecChH
Confidence 355678899999999999999999999998876655542 233444443 556777788765 46777753
No 77
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.27 E-value=0.97 Score=37.90 Aligned_cols=64 Identities=8% Similarity=0.165 Sum_probs=42.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec-C--cHHHHHHHHHHHh
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM-T--RRDLLNLIRSLRQ 117 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg-~--d~~V~eaLe~Lk~ 117 (532)
..+.+.-+|+||-++++.+.|+++|+|+..+++.-. .+.....+-+++.. . .+.+.+.++.|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~-~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM-DGYFTMIMIVDISESNLDFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh-CCccEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456677799999999999999999999999988753 22222333344433 1 2445555555543
No 78
>PRK08639 threonine dehydratase; Validated
Probab=90.97 E-value=1.5 Score=47.12 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=50.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHHHHHHHHHHhhc
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDLLNLIRSLRQSS 119 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~ 119 (532)
.+..+.|.++++||+|.++|+.....+-|++.|.-|......-. ...|.+|..+ +.++++++.|++..
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~-~v~v~iE~~~~~h~~~i~~~L~~~G 403 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETG-PVLVGIELKDAEDYDGLIERMEAFG 403 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCce-EEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 46789999999999999999944444449999987764322222 4666777654 67888888888765
No 79
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.32 E-value=1.7 Score=35.06 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=28.7
Q ss_pred EEEeCCCccHHHHHHHHHHHCCcceeeeeccc
Q psy14226 56 VLRMREGMSSLARILKTIEVFKGTVVHLETRV 87 (532)
Q Consensus 56 IFsL~dkpGALaeILkvFa~~gINLThIESRP 87 (532)
.+.-+|+||-++++-+.|+++|+|+..+.+.-
T Consensus 3 ~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 3 TLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 45568999999999999999999999998884
No 80
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=89.90 E-value=1.7 Score=36.15 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=43.6
Q ss_pred CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 60 REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 60 ~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
...+|.++++++.|+++|||+-+|-+ ....+.|-|+-..- ++.+++++++|++.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~-----s~~~isftv~~~~~~~~~l~~l~~el~~~~ 67 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST-----SEVHVSMALHMENAEDTNLDAAVKDLQKLG 67 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe-----CCCEEEEEEehhhcChHHHHHHHHHHHHhe
Confidence 44699999999999999999999976 12567888776542 348889999998854
No 81
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=89.20 E-value=1.9 Score=35.42 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=38.0
Q ss_pred EEEEEe--CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcH---HHHHHHHHH
Q psy14226 54 ALVLRM--REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRR---DLLNLIRSL 115 (532)
Q Consensus 54 SLIFsL--~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~---~V~eaLe~L 115 (532)
.+++++ +|+||-++.+.+.++++|.|+..++-.-.. +.+...+-++++.. .+.+.|+.+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~---~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLG---GRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEET---TEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEc---CeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 355555 799999999999999999999877665543 34555555555543 444444444
No 82
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=88.91 E-value=1.7 Score=41.98 Aligned_cols=67 Identities=15% Similarity=0.288 Sum_probs=50.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeee-ecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHL-ETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThI-ESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
+.++-+.|+|+||-|.++|+.++..|.|+..| -||--+. ....-.-|-++++ ++..+++++.++...
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~-g~r~pV~i~~~~d~~~~~~~i~~~~e~~G 73 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKY-GPRVPVQIVFEGDREDKDAKIIRLLEEEG 73 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCccc-CCceeEEEEEEecccHHHHHHHHHHHhCC
Confidence 67888999999999999999999999999655 5665443 3345556667776 567778888885544
No 83
>PRK09224 threonine dehydratase; Reviewed
Probab=88.87 E-value=2.2 Score=47.30 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=53.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-H-HHHHHHHHHHhhcCCccEEEec
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-R-DLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~-~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
....+.++++++||+|.++++.+. +-|+|.++=|-.... .=..+|-++..+ + .+.++++.|+.... .+..+.
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~--~a~V~vgie~~~~~~~~~~i~~~L~~~gy--~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAK--EAHIFVGVQLSRGQEERAEIIAQLRAHGY--PVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCC--eEEEEEEEEeCChhhHHHHHHHHHHHcCC--CeEECC
Confidence 367888999999999999999998 689999988874433 334566666543 3 37888999987652 455554
Q ss_pred c
Q psy14226 129 E 129 (532)
Q Consensus 129 s 129 (532)
.
T Consensus 401 ~ 401 (504)
T PRK09224 401 D 401 (504)
T ss_pred C
Confidence 3
No 84
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=88.56 E-value=1.4 Score=34.11 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=39.0
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHH
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSL 115 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~L 115 (532)
+.+.+|..+++++.|+++|||+-+|.+ ......|+|+-.-.+..+++++++|
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~t-----~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIPT-----SENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEec-----CCCEEEEEEehhhhhHHHHHHHHhh
Confidence 345799999999999999999999965 2256888887654345666666655
No 85
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=87.58 E-value=2.7 Score=48.69 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=58.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHHHHHHHHHHhhcC
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDLLNLIRSLRQSSS 120 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~~ 120 (532)
.-.+.|.+...|++|.|.++++++++.++|++.+.++.. ......+.++++.++ ..+..++..|++...
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~--~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~ 694 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD--KDQFATMQFTIEVKNLNHLGRVLARLKQLPD 694 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc--CCceEEEEEEEEECcHHHHHHHHHHHhcCCC
Confidence 446788889999999999999999999999999999987 444577788888765 788999999987653
No 86
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.52 E-value=4.6 Score=33.61 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=41.7
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec-C-cHHHH-HHHHHHHhhc
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM-T-RRDLL-NLIRSLRQSS 119 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg-~-d~~V~-eaLe~Lk~~~ 119 (532)
+++.+|.++++++.|+++|||+-+|-+ + ...+.|-|+-.- + ++.+. +++++|++.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~-s----~~~iSftv~~~d~~~~~~~~~~l~~~l~~~~ 69 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITT-S----EISVALTLDNTGSTSDQLLTQALLKELSQIC 69 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEee-c----CCEEEEEEeccccchhHHHHHHHHHHHHhcc
Confidence 467899999999999999999999965 1 145777776432 1 23565 7888888755
No 87
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.36 E-value=2.9 Score=35.53 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=48.1
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
-+.|+++++||||.+.|+.+.. +.|+|.++=|-.....+ ..+|-++..+..+.++++.|+...
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a--~vlvGi~~~~~~~~~l~~~l~~~g 65 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYG--RVLVGIQVPDADLDELKERLDALG 65 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCce--eEEEEEEeChHHHHHHHHHHHHcC
Confidence 4678899999999999999933 89999999998655333 356666554447788888887754
No 88
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=87.20 E-value=3.2 Score=33.99 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=43.6
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC---cHHHHHHHHHHHhh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT---RRDLLNLIRSLRQS 118 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~---d~~V~eaLe~Lk~~ 118 (532)
+.+.+|.+.++++.++++|||+..+-+ ......|.|+-+.. +..+.+++++|++.
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~-----s~~~is~~v~~~~~~~~~~~~~~~~~~l~~~ 68 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLIST-----SEVSVSLTLDPTKNLSDQLLLDALVKDLSQI 68 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEc-----CCcEEEEEEEchhhccchHHHHHHHHHHHhC
Confidence 456799999999999999999999965 22568888876543 45788888888873
No 89
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.02 E-value=2.9 Score=34.04 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=39.8
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQS 118 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~ 118 (532)
=+|+||-++++-+.|+++|+|+..++++-..+ .....+.+++... -..+++.++.+.+.
T Consensus 6 G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~-~f~~~~~v~~p~~~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 6 GPDRPGLTSALTEVLAAHGVRILDVGQAVIHG-RLSLGILVQIPDSADSEALLKDLLFKAHE 66 (75)
T ss_pred cCCCCCHHHHHHHHHHHCCCCEEecccEEEcC-eeEEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999998665542 2233344444222 24566666665543
No 90
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.91 E-value=2.7 Score=31.03 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=30.9
Q ss_pred EEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEE
Q psy14226 57 LRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVK 100 (532)
Q Consensus 57 FsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD 100 (532)
..+++.+|.+.++++.++++|||+..|..-++........|.++
T Consensus 6 ~~~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 6 KGVPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred ecCCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 34678899999999999999999988755443322223444443
No 91
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=86.62 E-value=3.4 Score=47.91 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=54.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHHHHHHHHHHhhcCC
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDLLNLIRSLRQSSSL 121 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~~~ 121 (532)
.+.|.+...|++|.|.++...+++.++|+..+.++..+ ......-++++..+ ..+..++..|++...+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~--~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V 694 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKD--GRVYSAFIRLTARDRVHLANIMRKIRVMPDV 694 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcC--CCEEEEEEEEEECCHHHHHHHHHHHhCCCCc
Confidence 66788888999999999999999999999999986543 23345556677654 7899999999877543
No 92
>PRK12483 threonine dehydratase; Reviewed
Probab=86.59 E-value=3.6 Score=46.10 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=54.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHH-HHHHHHHHhhcCCccEEEec
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDL-LNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V-~eaLe~Lk~~~~~~~VkVLG 128 (532)
.+..+.++++++||+|.++++++... |+++|+=|-.. ..+-..+|.+|..+ +.. .++++.|+.... .++.+.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~--~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g~--~~~dls 417 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYAD--AREAHLFVGVQTHPRHDPRAQLLASLRAQGF--PVLDLT 417 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecC--CCeeEEEEEEEeCChhhhHHHHHHHHHHCCC--CeEECC
Confidence 46788899999999999999999988 99999887533 33455677777653 555 899999987652 455554
Q ss_pred c
Q psy14226 129 E 129 (532)
Q Consensus 129 s 129 (532)
.
T Consensus 418 d 418 (521)
T PRK12483 418 D 418 (521)
T ss_pred C
Confidence 3
No 93
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.47 E-value=3.5 Score=35.26 Aligned_cols=63 Identities=10% Similarity=0.150 Sum_probs=45.5
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec-CcHHHHHHHHHHHhhcCCccEEE
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM-TRRDLLNLIRSLRQSSSLGGINL 126 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg-~d~~V~eaLe~Lk~~~~~~~VkV 126 (532)
++.+.|-+.++|++|+++||+.-|+-| . -......|+=.. .++..++++++|++.+....+.+
T Consensus 11 Mn~evGF~rk~L~I~E~~~is~Eh~PS---G--ID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i~v 74 (76)
T cd04911 11 MNREVGFGRKLLSILEDNGISYEHMPS---G--IDDISIIIRDNQLTDEKEQKILAEIKEELHPDEIEI 74 (76)
T ss_pred ccchhcHHHHHHHHHHHcCCCEeeecC---C--CccEEEEEEccccchhhHHHHHHHHHHhcCCCEEEE
Confidence 356899999999999999999988744 3 233555555432 24488899999998776555544
No 94
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=85.42 E-value=4.1 Score=46.97 Aligned_cols=67 Identities=10% Similarity=0.196 Sum_probs=54.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
-.+.|.+...|++|.|+++...+++.++|+..+.++-.. .....+-++++.. -..+..++..|+...
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~--~~~~~~~~~ieV~~~~~L~~ii~~L~~i~ 676 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG--KREAILNITVEIKNYKHLLKIMLKIKTKN 676 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC--CCEEEEEEEEEECCHHHHHHHHHHHhCCC
Confidence 366888889999999999999999999999999986432 3445666777765 478999999998764
No 95
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=84.98 E-value=5.3 Score=30.81 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=24.7
Q ss_pred EEeCCCccHHHHHHHHHHHCCcceeeeec
Q psy14226 57 LRMREGMSSLARILKTIEVFKGTVVHLET 85 (532)
Q Consensus 57 FsL~dkpGALaeILkvFa~~gINLThIES 85 (532)
+.+++.+|.+.++++.++++|||+.-|-.
T Consensus 7 ~~~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 7 RGVPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 34578899999999999999999987743
No 96
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.91 E-value=4.6 Score=34.26 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=40.4
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC------cHHHHHHHHHHHhhc
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT------RRDLLNLIRSLRQSS 119 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~------d~~V~eaLe~Lk~~~ 119 (532)
+++.+|.++++++.|+++|||+-+|-+ ....+.|-|+-+.- +..+.++.++|++.+
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q-----s~~sISftV~~sd~~~~~~~~~~l~~~~~~~~~~~ 72 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT-----SEVSISLTLDPSKLWSRELIQQELDHVVEELEKDA 72 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe-----cCCEEEEEEEhhhhhhhhhHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999965 12567777765432 135556666666544
No 97
>PLN02550 threonine dehydratase
Probab=84.89 E-value=4.1 Score=46.38 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=55.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhcCCccEEEecc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSSSLGGINLLTE 129 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~~~~~VkVLGs 129 (532)
+..+.+.++++||+|.++++++... |+++|+=|... ..+-.++|.++.. .+.++++++.|++... .+..|..
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~--~~~~~v~v~ie~~~~~~~~~i~~~l~~~g~--~~~~l~~ 489 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSS--EKEALVLYSVGVHTEQELQALKKRMESAQL--RTVNLTS 489 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecC--CCceEEEEEEEeCCHHHHHHHHHHHHHCCC--CeEeCCC
Confidence 5678889999999999999999886 99999988733 3345667777765 4688899999987652 4444443
No 98
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=83.33 E-value=6.5 Score=43.70 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=53.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhcCCccEEEec
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
....+.++++++||+|.++++++.. -|+|.+.=|-+... .=..+|-++.. .+.+.++++.|+.... .+..+.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~--~a~v~vgie~~~~~~~~~l~~~L~~~Gy--~~~dls 396 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRK--DAHIFVGVQLSNPQERQEILARLNDGGY--SVVDLT 396 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCC--eEEEEEEEEeCCHHHHHHHHHHHHHcCC--CeEECC
Confidence 4678889999999999999999997 59999988864333 34466667665 4678889999987652 444443
No 99
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=82.26 E-value=7.1 Score=45.70 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=52.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhcC
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSSS 120 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~~ 120 (532)
.+.|.+...|++|.|.++.+++++.++|+..+.++..+. .+....-+.++.. -..+..++..|++...
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~-~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~ 734 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTK-QQLATIDMTIEIYNLQVLGRVLGKLNQVPD 734 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCC-CCEEEEEEEEEECCHHHHHHHHHHHhcCCC
Confidence 567888889999999999999999999999999875431 2234445556654 4788999999987653
No 100
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.62 E-value=8.9 Score=32.57 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=41.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEE-EEecC---c-HHHHHHHHHHH
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLV-KVDMT---R-RDLLNLIRSLR 116 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFV-D~Eg~---d-~~V~eaLe~Lk 116 (532)
|-|=+..+|+||-|+++...|.+.|+++. ||-+ .+..-.=.||| |.+|. + ...+++-+.|.
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T---~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~ 69 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT---DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLE 69 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee---cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHH
Confidence 34556789999999999999999999997 5554 22233345888 66663 2 33444444443
No 101
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=79.65 E-value=6.3 Score=43.21 Aligned_cols=109 Identities=13% Similarity=0.183 Sum_probs=73.9
Q ss_pred EEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec-CcHHHHHHHHHHHhhcCCccEEEecccCccCC
Q psy14226 57 LRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM-TRRDLLNLIRSLRQSSSLGGINLLTENNISVK 135 (532)
Q Consensus 57 FsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg-~d~~V~eaLe~Lk~~~~~~~VkVLGs~n~~e~ 135 (532)
+...|+.|-.-++|..+..++|||-.||--|.. ..|++|-. ..+.+.+++.+|+....+..|+ .
T Consensus 5 V~cedRlGltrelLdlLv~r~idl~~iEid~~~------~IYln~p~l~~~~fs~L~aei~~I~GV~~vr---------~ 69 (511)
T COG3283 5 VFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG------RIYLNFPELEFESFSSLMAEIRRIPGVTDVR---------T 69 (511)
T ss_pred EEehhhhchHHHHHHHHHhcccCccceeecCCC------eEEEeccccCHHHHHHHHHHHhcCCCcccee---------e
Confidence 445689999999999999999999999986643 46788754 4577888888888765322222 4
Q ss_pred CCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHH
Q psy14226 136 GPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIA 180 (532)
Q Consensus 136 vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA 180 (532)
|||.|-.-..|..-+-+-.+-.|-+..|--|--+..-.+.++.+.
T Consensus 70 V~~mPseR~hl~L~aLL~al~~pVlsvd~kg~v~~aNpAa~~l~~ 114 (511)
T COG3283 70 VPWMPSEREHLALSALLEALPEPVLSVDMKGKVDMANPAACQLFG 114 (511)
T ss_pred ecCCcchhHhHHHHHHHHhCCCceEEecccCceeecCHHHHHHhC
Confidence 899995544444433333344556666777766655555554443
No 102
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=79.49 E-value=3.5 Score=35.70 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=45.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
.+.-+.|+++++||||.+.|+.+..+. |+|.+.=|-+...... .+|-++.. .+.++++++.|+...
T Consensus 9 ~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~--vlvgi~v~~~~~~~~l~~~L~~~g 75 (91)
T PF00585_consen 9 REALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFAR--VLVGIEVPDAEDLEELIERLKALG 75 (91)
T ss_dssp -EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSE--EEEEEE-SSTHHHHHHHHHHTSSS
T ss_pred CEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeee--EEEEEEeCCHHHHHHHHHHHHHcC
Confidence 466788999999999999999996654 5999988887764443 45555554 345788888887654
No 103
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.19 E-value=11 Score=30.60 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=28.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceee--eecc
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVH--LETR 86 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLTh--IESR 86 (532)
+.+.+..+|+||-|+++-.+|+.+|+|+.. |.+.
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~ 37 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT 37 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe
Confidence 346677889999999999999999999984 5554
No 104
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=78.35 E-value=21 Score=29.48 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=40.6
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec-CcHHHHHHHHHHHhh
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM-TRRDLLNLIRSLRQS 118 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg-~d~~V~eaLe~Lk~~ 118 (532)
|.+.=+|+||-.+++-+.++++|.|+..+...-. .+..-+..-++++. +.+.+.+.++.+.+.
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~-~~~F~m~~~~~~~~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRMAIL-GTEFALTMLVEGSWDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE-cCEEEEEEEEEeccccHHHHHHHHHHHHHH
Confidence 3445589999999999999999999997765541 12222223334432 135566666666544
No 105
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=78.19 E-value=9 Score=37.93 Aligned_cols=70 Identities=10% Similarity=0.104 Sum_probs=49.6
Q ss_pred EEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEe
Q psy14226 56 VLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 56 IFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
-+...|+||.|.++-.+++++|.|+|+++.--.+... .-..|.++|+-+ +...+++.|+....+..+++.
T Consensus 6 si~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~-~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~ 75 (218)
T COG1707 6 SIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE-KALIYMEIEGID-DFEKLLERLKSFDYVIEVEIH 75 (218)
T ss_pred EEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc-eEEEEEEeeCCC-CHHHHHHHhhccceEEEeeec
Confidence 3445789999999999999999999999976655332 456788898743 234677777755433344443
No 106
>PRK06349 homoserine dehydrogenase; Provisional
Probab=78.18 E-value=8.3 Score=41.76 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=48.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
+--|.+.+.|+||.|+++-+.|.+++||+..|...+......+. +++-=......+.++++.|++..
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~i-vivT~~~~e~~l~~~i~~L~~l~ 414 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEI-VIVTHETSEAALRAALAAIEALD 414 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeE-EEEEEeCCHHHHHHHHHHHhcCc
Confidence 34566677899999999999999999999998777654322222 23322345678888999887653
No 107
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=76.38 E-value=10 Score=36.81 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=52.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEec
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
+-.+.+-+.|+||.|.++...|+.+|.|+-.|---|+-... .=..-+-..+++..+..+.+.|.+.. +-++++-
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~-~SRiTivv~g~~~~~EQi~kQL~kLi--dV~kV~d 77 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPG-LSRITIVVSGDEQVLEQIIKQLNKLI--DVLKVLD 77 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCC-ceEEEEEEcCCcchHHHHHHHHHhhc--cceeEEE
Confidence 34556667899999999999999999999888777765444 33333444555566778888887765 3445543
No 108
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=74.58 E-value=9.5 Score=41.24 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=46.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEE-EEEEecCcHHHHHHHHHHHhhcCCccEEE
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDV-LVKVDMTRRDLLNLIRSLRQSSSLGGINL 126 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~F-FVD~Eg~d~~V~eaLe~Lk~~~~~~~VkV 126 (532)
..-+|++.=+|+||.+++++++++++|||+-.+..+... ++-+ .||++...+ .++++.|++...+..+++
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~----~~A~~iie~D~~~~--~~~~~~i~~i~~v~~v~~ 407 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG----EIGYVVIDVDADYA--EEALDALKAIPGTIRARL 407 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC----CEEEEEEEeCCCCc--HHHHHHHHcCCCeEEEEE
Confidence 455677766889999999999999999999776653322 3333 348887422 256666665443334444
No 109
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=74.56 E-value=5.5 Score=35.33 Aligned_cols=49 Identities=8% Similarity=0.164 Sum_probs=39.0
Q ss_pred EEEEe--CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC
Q psy14226 55 LVLRM--REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT 104 (532)
Q Consensus 55 LIFsL--~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~ 104 (532)
.++++ +|+||--+.+-++++++|+|+..|+- -....-....++|||...
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQ-tvm~~~ftm~~lV~~~~~ 54 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQ-TVMDGFFTMIMLVDISKE 54 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHH-HHHhhhceeeeEEcCChH
Confidence 44444 78999999999999999999999964 344456678899999653
No 110
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.77 E-value=6.1 Score=33.25 Aligned_cols=49 Identities=4% Similarity=-0.120 Sum_probs=35.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEE-EEecC
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLV-KVDMT 104 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFV-D~Eg~ 104 (532)
|-|=+...|+||-|+++.++|+++|+++. ||.+- +..-.=.||| |.+|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~---Gerv~DvFyV~d~~g~ 53 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSD---GGWFMDVFHVTDQLGN 53 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeec---CCeEEEEEEEECCCCC
Confidence 44557789999999999999999999996 55543 2222345888 44553
No 111
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=72.29 E-value=13 Score=36.56 Aligned_cols=64 Identities=6% Similarity=0.154 Sum_probs=42.8
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCC-CCce--EEEEEEEecC----cHHHHHHHHHHHhh
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKM-AGIQ--FDVLVKVDMT----RRDLLNLIRSLRQS 118 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~-~~~e--Y~FFVD~Eg~----d~~V~eaLe~Lk~~ 118 (532)
+-+.=.|+||-++++-+.|+.+|||+..+.|+-... ..+. |..-+.++.. -..+.+.++.|...
T Consensus 98 v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~e 168 (190)
T PRK11589 98 VQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTE 168 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 334447999999999999999999999999986553 1233 4433444432 24566666666543
No 112
>PRK06545 prephenate dehydrogenase; Validated
Probab=71.34 E-value=9 Score=40.28 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=34.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCC
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMA 91 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~ 91 (532)
-..+.+.++|+||.|++++..+...|||+..|+-.-++..
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~ 329 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARED 329 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCC
Confidence 4678889999999999999999999999998887666543
No 113
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=69.58 E-value=14 Score=43.43 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=43.2
Q ss_pred ccCCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEe
Q psy14226 48 SAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVD 102 (532)
Q Consensus 48 sg~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~E 102 (532)
...+.|.+-+...|+||-|+++.++|.++|||+.+....... ....-.|||...
T Consensus 775 ~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~-~~~~d~F~v~~~ 828 (850)
T TIGR01693 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFG-EKAEDVFYVTDL 828 (850)
T ss_pred CCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecC-ccceeEEEEECC
Confidence 335678888999999999999999999999999876665543 445667999753
No 114
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=68.06 E-value=41 Score=34.97 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=44.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC----cHHHHHHHHHHHhh
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT----RRDLLNLIRSLRQS 118 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~----d~~V~eaLe~Lk~~ 118 (532)
..+.+.-+|+||-.+++-+.|+++|+|+..+.+.-.. ....|...++++.+ ...+++.++.+-..
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~-~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR-LSGRFFMRVEFHSEEGLDEDALRAGFAPIAAR 76 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC-CCCeEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3444555899999999999999999999999997322 23334444555432 35677777776543
No 115
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=67.12 E-value=18 Score=26.04 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=33.7
Q ss_pred CCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHH
Q psy14226 61 EGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSL 115 (532)
Q Consensus 61 dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~L 115 (532)
+.+|.+.++++.+++++||+..|-.-.+ .....|.++-+ ...++++.|
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~~~~s~~v~~~----~~~~~~~~l 59 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES---EVNISFTVDES----DLEKAVKAL 59 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC---cEEEEEEEeHH----HHHHHHHHh
Confidence 5789999999999999999998876543 23456666542 344454443
No 116
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=66.59 E-value=32 Score=35.83 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=44.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec------CcHHHHHHHHHHHhh
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM------TRRDLLNLIRSLRQS 118 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg------~d~~V~eaLe~Lk~~ 118 (532)
-|.+.=+|+||-.+++=+.++++|+|+..+... .....+.|...++++. +.+.++++++.+.+.
T Consensus 11 iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~-~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~ 80 (289)
T PRK13010 11 VLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF-DDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEK 80 (289)
T ss_pred EEEEECCCCCCcHHHHHHHHHHCCCCEEecccc-cccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 344445899999999999999999999999886 3334445655555552 125666667666443
No 117
>PRK05092 PII uridylyl-transferase; Provisional
Probab=63.39 E-value=18 Score=43.02 Aligned_cols=53 Identities=6% Similarity=-0.112 Sum_probs=40.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEE-ec
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKV-DM 103 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~-Eg 103 (532)
.+.|.|-+..+|+||-|+++.++|+.+|||+..-.... .+....-.|||.- +|
T Consensus 841 ~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g 894 (931)
T PRK05092 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFG 894 (931)
T ss_pred CCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCC
Confidence 45678888899999999999999999999998555542 3444456688843 44
No 118
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.50 E-value=37 Score=25.42 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=35.9
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|.+.++++.+++++||+-.|-+. ...+.|.|+- .+..++++.|++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~~~is~~v~~----~~~~~~~~~l~~ 59 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS-----EIKISCLVDE----DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc-----CCeEEEEEeH----HHHHHHHHHHHH
Confidence 5567899999999999999999988642 2456677765 344455555543
No 119
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=62.22 E-value=27 Score=38.96 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=48.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeee-cccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEE
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLE-TRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINL 126 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIE-SRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkV 126 (532)
+..++++.-+|+||.+..+.+.|.+++||+.... +|-. +.++....++++..-+ .++++.|++...+..+++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~--~g~~al~~i~~D~~v~--~~~l~~i~~~~~i~~~~~ 523 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRRE--AGGEALMVLSVDDPVP--EEVLEELRALPGILSAKA 523 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCC--CCCeEEEEEECCCCCC--HHHHHHHhcCCCcceEEE
Confidence 4566777778999999999999999999997665 5532 3345666677776421 345666665433334443
No 120
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=61.19 E-value=39 Score=25.33 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=35.4
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|.+.++++.+++++||+-.|-+.+ ....|.|+- .+..++++.|++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s~-----~~is~~v~~----~d~~~~~~~l~~ 59 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTSE-----IKISCLIDE----DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEccC-----ceEEEEEeH----HHHHHHHHHHHH
Confidence 56679999999999999999999886422 345566654 344455555543
No 121
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=60.28 E-value=21 Score=28.87 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=29.5
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEE
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKV 101 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~ 101 (532)
+++.+|.++++++.++++|||+-.| ++-+. ++.|.|+-
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI-~~~~~----~isFtv~~ 46 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLI-NVSPE----EVIFTVDG 46 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEE-EecCC----CEEEEEch
Confidence 3466999999999999999999999 55411 46666654
No 122
>PLN02627 glutamyl-tRNA synthetase
Probab=59.70 E-value=4.7 Score=45.49 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=98.9
Q ss_pred cccccccccCCCCCCCCCCchhhHhhhC-------CCCCCCChhHHHHHHHHhhhhc------CCCHHH-HHHHhhhhee
Q psy14226 334 VFQSTQYVRHTKTPFHTVEPDCIHELLG-------HMPLLADPSFAQFSQEIGLASL------GASDEE-IEKLSTVYWF 399 (532)
Q Consensus 334 ~F~~tqyiR~~~~~~ytpePD~~He~~G-------H~P~l~~p~fA~f~q~~G~~~l------~a~~~~-~~~l~~~yWf 399 (532)
.-..|.-||-.+...=||-=-.+.+.|| |+|++.|+.-...|.+-|..++ |...+. +..|+++=|-
T Consensus 247 ~mgITHViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~~v~~~r~~G~~PeAi~nyla~LGws 326 (535)
T PLN02627 247 TMGITHVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWN 326 (535)
T ss_pred ccCCcEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCCCccccccCCccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 3467888998888888887777777776 9999999998888988887666 445554 5667777662
Q ss_pred eeEeeeeecCCceeEeccccccchhhhhhhc-----CCCCccccCCccccccccccCCCCccceeeeCCHHHHHHHHHHH
Q psy14226 400 TVEFGLCKENGEVKAYGAGLLSSYGELLHAI-----SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRW 474 (532)
Q Consensus 400 TvEfGL~~e~g~~kayGAGlLSS~gE~~~~l-----s~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~ 474 (532)
. .++- -+-|..|+...+ +.+| ..||+... ..++..|.-.-+.+++.+.+..|
T Consensus 327 ~--------~~~~------e~~~~~eli~~F~l~~v~~s~--~~fD~~KL-------~wlN~~yir~l~~~el~~~~~p~ 383 (535)
T PLN02627 327 D--------GTEN------EIFTLEELVEKFSIDRINKSG--AVFDSTKL-------KWMNGQHLRLLPEEELVKLVGER 383 (535)
T ss_pred C--------CCCC------CcCCHHHHHHhCCHhhCCCcc--cccCHHHH-------HHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 0111 122566654433 2222 12333321 24556666667899999999988
Q ss_pred HHhcCCCceeeecCCcceEEEecChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14226 475 VSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNLEMLHLNTAVNKLR 524 (532)
Q Consensus 475 ~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 524 (532)
......... +....++.++..++.-+..|.++...+.
T Consensus 384 l~~~~~~~~-------------~~~~~l~~~~~l~~~ri~~L~d~~~~~~ 420 (535)
T PLN02627 384 WKSAGILKE-------------SDGSFVKEAVELLKDGIELVTDADKELL 420 (535)
T ss_pred HHHcCCCcc-------------ccHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 876432110 1235577777777777777777776654
No 123
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=59.22 E-value=56 Score=33.92 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=41.7
Q ss_pred EEEEE--eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec---C--cHHHHHHHHHHHhh
Q psy14226 54 ALVLR--MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM---T--RRDLLNLIRSLRQS 118 (532)
Q Consensus 54 SLIFs--L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg---~--d~~V~eaLe~Lk~~ 118 (532)
.++++ =+|+||-.+++-+.++++|+|+..+.+.-... .+.|.--+.++. . -..++++|+.|.+.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~-~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPE-TGRFFMRVEFEGDGLIFNLETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34444 48999999999999999999999888765221 122222223333 1 24677777776544
No 124
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=55.37 E-value=27 Score=36.78 Aligned_cols=127 Identities=14% Similarity=0.167 Sum_probs=68.3
Q ss_pred cHHHHHHHHHHHCCcceeeeeccc---CCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEecccCccCCCC-CC
Q psy14226 64 SSLARILKTIEVFKGTVVHLETRV---SKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLTENNISVKGP-WF 139 (532)
Q Consensus 64 GALaeILkvFa~~gINLThIESRP---Sk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLGs~n~~e~vP-WF 139 (532)
....+-|+.+++.|+|+.+|-.-+ .-.++++|.| ..+..+|+.+++... .| +|+.. ....| |+
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF--------~~lD~~l~~a~~~Gi--~v-iL~~~--~~~~P~Wl 76 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDF--------SWLDRVLDLAAKHGI--KV-ILGTP--TAAPPAWL 76 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB-----------HHHHHHHHHHHCTT---EE-EEEEC--TTTS-HHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeec--------HHHHHHHHHHHhccC--eE-EEEec--ccccccch
Confidence 456788999999999999983211 1224456644 347788888887652 22 22321 11233 76
Q ss_pred CCccchhhhhhh--hhhccCCCCCCCCCCCCChHHHHH-HHHHHHHhhhcCCCCC----------CC-ccCCHHHHHHHH
Q psy14226 140 PTHASDLDNCNH--LMTKYEPDLDMNHPGFADQVYRQR-RKDIAEIAFKYNGDPI----------PH-IDYTDSEYATWK 205 (532)
Q Consensus 140 PRkIsDLD~ca~--~vL~yg~eld~dHPGFsD~~YreR-RawIA~Ia~~~~g~~i----------p~-~~YT~~e~~~W~ 205 (532)
.++.-|...... .....| ...|.-+.++.||++ ++.+..++..|+++|- .. ..|++.-.+.|+
T Consensus 77 ~~~~Pe~~~~~~~g~~~~~g---~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~ 153 (374)
T PF02449_consen 77 YDKYPEILPVDADGRRRGFG---SRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFR 153 (374)
T ss_dssp HCCSGCCC-B-TTTSBEECC---CSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHH
T ss_pred hhhcccccccCCCCCcCccC---CccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHH
Confidence 655444221111 111122 234566788999986 7888999999996552 22 466666666664
Q ss_pred H
Q psy14226 206 A 206 (532)
Q Consensus 206 ~ 206 (532)
.
T Consensus 154 ~ 154 (374)
T PF02449_consen 154 Q 154 (374)
T ss_dssp H
T ss_pred H
Confidence 3
No 125
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.90 E-value=47 Score=25.26 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=35.9
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+++.+|.+.++++.++++|||+-.|-.-++. ..+.|.|+- .++.++++.|.+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~---~~isf~i~~----~~~~~~~~~Lh~ 62 (66)
T cd04924 11 MRGTPGVAGRVFGALGKAGINVIMISQGSSE---YNISFVVAE----DDGWAAVKAVHD 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc---ceEEEEEeH----HHHHHHHHHHHH
Confidence 4567999999999999999999887532221 346666654 345556666644
No 126
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=54.46 E-value=63 Score=31.83 Aligned_cols=62 Identities=8% Similarity=0.136 Sum_probs=43.2
Q ss_pred eEEEEEEe--CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc---HHHHHHHHHHH
Q psy14226 52 TAALVLRM--REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR---RDLLNLIRSLR 116 (532)
Q Consensus 52 KTSLIFsL--~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d---~~V~eaLe~Lk 116 (532)
++.+++++ +|+||-.+++-+.++++|+|+. +||-+.-.. +|-..+=+.+.. ..+...|..+.
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~--ds~~t~lgg-~Fa~i~lvs~~~~~~~~le~~L~~l~ 72 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIE--DSRLAMLGE-EFTFIMLLSGSWNAITLIESTLPLKG 72 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCee--ehhhHhhCC-ceEEEEEEeCChhHHHHHHHHHHhhh
Confidence 35677776 7999999999999999999997 677665333 455555556553 34555555554
No 127
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=54.15 E-value=66 Score=25.87 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=37.5
Q ss_pred eEEEEEE-eCC-CccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHH
Q psy14226 52 TAALVLR-MRE-GMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLR 116 (532)
Q Consensus 52 KTSLIFs-L~d-kpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk 116 (532)
+.++.-. +.. .||-++++.+.++++|||+..|-|- ..-.++|+ ..++.+|++.|+
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS~------~~~~ilV~----~~~~~~A~~~L~ 64 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISSE------ISISILVK----EEDLEKAVEALH 64 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEES------SEEEEEEE----GGGHHHHHHHHH
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEEe------eeEEEEEe----HHHHHHHHHHhc
Confidence 4455555 554 8999999999999999999988731 12334443 345667777775
No 128
>PRK05007 PII uridylyl-transferase; Provisional
Probab=52.66 E-value=39 Score=40.29 Aligned_cols=53 Identities=13% Similarity=0.032 Sum_probs=39.5
Q ss_pred cCCeEEEEEEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEEEE-ecC
Q psy14226 49 AIQTAALVLRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLVKV-DMT 104 (532)
Q Consensus 49 g~dKTSLIFsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFVD~-Eg~ 104 (532)
..+.|.|=+..+|+||-|++|.++|.+.|+|+. ||-+. +..-.=.|||.- +|.
T Consensus 805 s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~---gera~DvFyV~~~~g~ 860 (884)
T PRK05007 805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTI---GERVEDLFILATADRR 860 (884)
T ss_pred CCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEecc---CceEEEEEEEEcCCCC
Confidence 356777888899999999999999999999996 66652 222234588843 443
No 129
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.56 E-value=1.1e+02 Score=25.38 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=29.9
Q ss_pred EEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEE
Q psy14226 57 LRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLV 99 (532)
Q Consensus 57 FsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFV 99 (532)
+..+|+||-|+++.+.|+.+|+|+. +|-+.+ +...-=.|+|
T Consensus 5 i~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~--~~~v~D~F~V 47 (76)
T cd04927 5 LFCSDRKGLLHDVTEVLYELELTIERVKVSTTP--DGRVLDLFFI 47 (76)
T ss_pred EEECCCCCHHHHHHHHHHHCCCeEEEEEEEECC--CCEEEEEEEE
Confidence 4568999999999999999999997 455432 2222234666
No 130
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=48.38 E-value=93 Score=22.83 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=35.7
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|.+.++++.+++++|++..|..-.+ ...+.|.|+. .++..+++.|++
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~---~~~i~~~v~~----~~~~~~~~~l~~ 61 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSS---EVNISFVVDE----DDADKAVKALHE 61 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCC---ceeEEEEEeH----HHHHHHHHHHHH
Confidence 446789999999999999999988854211 1345666654 345556666654
No 131
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.07 E-value=1.2e+02 Score=24.81 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=31.2
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEE
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLV 99 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFV 99 (532)
|-+..+|+||-|+++-..|+.+|+|+..-..... +....-.|+|
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V 46 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYV 46 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEE
Confidence 3455689999999999999999999975433322 3333445666
No 132
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=47.76 E-value=37 Score=28.80 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=38.2
Q ss_pred CC-CccHHHHHHHHHHHCCcceeeeecccCC------CCCceEEEEEEEecCc---HHHHHHHHHHHh
Q psy14226 60 RE-GMSSLARILKTIEVFKGTVVHLETRVSK------MAGIQFDVLVKVDMTR---RDLLNLIRSLRQ 117 (532)
Q Consensus 60 ~d-kpGALaeILkvFa~~gINLThIESRPSk------~~~~eY~FFVD~Eg~d---~~V~eaLe~Lk~ 117 (532)
++ .+|.++++=+.++++|+|+.+|...-.. ..+..|..-+++++.. +.++..+..+..
T Consensus 7 ~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~ 74 (84)
T cd04871 7 RPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELAS 74 (84)
T ss_pred CcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 44 6899999999999999999988764111 1123455555666543 456666665544
No 133
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=45.88 E-value=24 Score=33.26 Aligned_cols=26 Identities=8% Similarity=0.048 Sum_probs=23.1
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeee
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHL 83 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThI 83 (532)
-+.|+||-|..+++.++++|||+--+
T Consensus 9 FlENk~GRL~~~~~~L~eagINiRA~ 34 (142)
T COG4747 9 FLENKPGRLASVANKLKEAGINIRAF 34 (142)
T ss_pred EecCCcchHHHHHHHHHHcCCceEEE
Confidence 36799999999999999999999644
No 134
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.13 E-value=1e+02 Score=23.66 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=35.2
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|.++++++.+++.|||+..|-.=++. ....|.|+= .+..++++.|++
T Consensus 11 ~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~---~~isf~v~~----~~~~~a~~~lh~ 62 (66)
T cd04919 11 MKNMIGIAGRMFTTLADHRINIEMISQGASE---INISCVIDE----KDAVKALNIIHT 62 (66)
T ss_pred CCCCcCHHHHHHHHHHHCCCCEEEEEecCcc---ceEEEEEeH----HHHHHHHHHHHH
Confidence 3467999999999999999999888532221 345555543 344556666654
No 135
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=43.65 E-value=1.2e+02 Score=25.77 Aligned_cols=55 Identities=25% Similarity=0.231 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHCCcceeeeecc-------cCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 65 SLARILKTIEVFKGTVVHLETR-------VSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 65 ALaeILkvFa~~gINLThIESR-------PSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
.+.++-+.+.++|-.+.++|+. |++.....+.|++.++++...++++-+.|+...
T Consensus 21 ~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k~~~G~Y~~~~f~~~~~~i~el~~~l~~~~ 82 (92)
T PF01250_consen 21 LIERVKKIIEKNGGVVRSVENWGKRRLAYPIKKQKEGHYFLFNFDASPSAIKELERKLRLDE 82 (92)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEEEESSEETTECEEEEEEEEEEESTTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeecccccCCCCCCEEEEEEEEEEeCHHHHHHHHHHhcCCC
Confidence 4567778889999999999985 677777778899999998888888888887543
No 136
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=42.91 E-value=60 Score=36.33 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=47.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeee-cccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEE
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLE-TRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINL 126 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIE-SRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkV 126 (532)
-.++++.-.|+||.+.++.+++.+++||+.... +|..+ .++....++++..-+ .+++++|++...+..++.
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~--g~~al~~i~~D~~v~--~~~l~~i~~~~~i~~v~~ 522 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEK--GGEALMLLSLDQPVP--DEVLEEIKAIPDILSVFV 522 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCC--CCeEEEEEEcCCCCC--HHHHHHHhcCCCccEEEE
Confidence 345666668899999999999999999997763 56533 345666677766421 346666665433234443
No 137
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=40.28 E-value=83 Score=23.98 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=35.3
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|.++++++.++++|||+..|-.=++ .-...|.|+= .+..++++.|.+
T Consensus 11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s---~~~is~~v~~----~~~~~~~~~lh~ 62 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIAQGSS---ERNISAVIDE----DDATKALRAVHE 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCc---ccEEEEEEeH----HHHHHHHHHHHH
Confidence 456799999999999999999988853122 1345555543 344555666543
No 138
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.27 E-value=1.3e+02 Score=22.82 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=35.0
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|.+.++++.+++.|||+-.|-.=.+ ...+.|.|+- .++.++++.|.+
T Consensus 11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s---~~~isf~v~~----~d~~~~~~~lh~ 62 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSS---EISIMIGVHN----EDADKAVKAIYE 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCc---ccEEEEEEeH----HHHHHHHHHHHH
Confidence 456799999999999999999988743111 1345566654 344555555543
No 139
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.09 E-value=2.2e+02 Score=23.87 Aligned_cols=32 Identities=3% Similarity=0.024 Sum_probs=26.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecc
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETR 86 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESR 86 (532)
|++..+++||-++++-.+|..+|+|+..=...
T Consensus 4 I~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~ 35 (68)
T cd04928 4 ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAF 35 (68)
T ss_pred EEEEECCCcchHHHHHHHHHHCCCceEEEEEE
Confidence 56667899999999999999999999854333
No 140
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=39.72 E-value=45 Score=33.00 Aligned_cols=63 Identities=8% Similarity=0.015 Sum_probs=45.9
Q ss_pred EEEEEEe--CCCccHHHHHHHHHHHCCcceeeeecccCC-CCCceEEEEEEEecC------cHHHHHHHHHH
Q psy14226 53 AALVLRM--REGMSSLARILKTIEVFKGTVVHLETRVSK-MAGIQFDVLVKVDMT------RRDLLNLIRSL 115 (532)
Q Consensus 53 TSLIFsL--~dkpGALaeILkvFa~~gINLThIESRPSk-~~~~eY~FFVD~Eg~------d~~V~eaLe~L 115 (532)
..+.+.+ .|+||-+.++-..|..+||||-.++||-.. ...+.=.|.+++..+ -..+++.++.|
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al 162 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEAL 162 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHH
Confidence 3455554 689999999999999999999999998654 234457899988753 23444444444
No 141
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=39.71 E-value=77 Score=24.93 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=35.5
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|-+.++++.+++.|||+..+-+ ..-...|.|+- .+..++++.|.+
T Consensus 11 ~~~~~gi~~~if~aL~~~~I~v~~~~~-----Se~~is~~v~~----~~~~~av~~Lh~ 60 (64)
T cd04937 11 IRGVPGVMAKIVGALSKEGIEILQTAD-----SHTTISCLVSE----DDVKEAVNALHE 60 (64)
T ss_pred ccCCcCHHHHHHHHHHHCCCCEEEEEc-----CccEEEEEEcH----HHHHHHHHHHHH
Confidence 557899999999999999999976654 12234555543 455667777754
No 142
>PF14350 Beta_protein: Beta protein
Probab=39.28 E-value=18 Score=37.69 Aligned_cols=88 Identities=19% Similarity=0.342 Sum_probs=54.1
Q ss_pred CCceEEEEEEEecC----c----HHHHHHHHHHHhhcCCccEEEecccCccCCCCCCCCccchhh-------------hh
Q psy14226 91 AGIQFDVLVKVDMT----R----RDLLNLIRSLRQSSSLGGINLLTENNISVKGPWFPTHASDLD-------------NC 149 (532)
Q Consensus 91 ~~~eY~FFVD~Eg~----d----~~V~eaLe~Lk~~~~~~~VkVLGs~n~~e~vPWFPRkIsDLD-------------~c 149 (532)
.+.+..+++|+..- . +.+..+++.|.....+..|.+.|.. ||..++++- .+
T Consensus 152 ~~~~~~lilD~~~i~~~~~~~~~~~~~~~l~~l~~~~~~~~v~v~~tS--------fP~s~~~~~~~~~~~i~r~E~~l~ 223 (347)
T PF14350_consen 152 SPNEVDLILDLGDIRDSDESAVAEAIIRALNSLPSLFPWRSVIVAGTS--------FPSSISGIPKDGSGEIPRHEWDLW 223 (347)
T ss_pred CccceEEEEECCccCCcchHHHHHHHHHHHHhhhhccCCeEEEEEecc--------cCCcccccccCcCCceeeHHHHHH
Confidence 45678899999751 1 2334456666665555678888863 666665552 11
Q ss_pred ---hh----hhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHH
Q psy14226 150 ---NH----LMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEY 201 (532)
Q Consensus 150 ---a~----~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~ 201 (532)
.+ ..+.|| |-...||.+.+. .-. |.+.|+|+||-++.
T Consensus 224 ~~i~~~~~~~~~~yG-DYg~~~p~~~~~--------------~~~~~~~~~~I~Yt~~~~ 268 (347)
T PF14350_consen 224 KAIRSQNNDRRPIYG-DYGSIHPDYSDP--------------DGGGGRPNPRIRYTTDDK 268 (347)
T ss_pred HHHhhhcCCCCcccC-CCCCCCcccccC--------------CccCCCCCeEEEEECCCc
Confidence 22 344567 666677765411 112 78999999998775
No 143
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=39.27 E-value=71 Score=35.62 Aligned_cols=58 Identities=7% Similarity=0.075 Sum_probs=44.5
Q ss_pred EEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 56 VLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 56 IFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
-+...|++|--.++|..|..++|||.-||=-|.. ..|++|..- ......++.++++..
T Consensus 4 ~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (520)
T PRK10820 4 EVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG------RIYLNFAELEFESFSSLMAEIRRIA 62 (520)
T ss_pred EEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC------eEEEeCCCcChhhHHHHHHHHhcCC
Confidence 3456799999999999999999999999964431 278888753 345677888887654
No 144
>KOG3217|consensus
Probab=38.68 E-value=67 Score=31.25 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCcceeeeecccCCCCCce-EEEEEEEecCcHHHHHHHHH--HHhhcCCccEEEecccCcc----CCCCCC
Q psy14226 67 ARILKTIEVFKGTVVHLETRVSKMAGIQ-FDVLVKVDMTRRDLLNLIRS--LRQSSSLGGINLLTENNIS----VKGPWF 139 (532)
Q Consensus 67 aeILkvFa~~gINLThIESRPSk~~~~e-Y~FFVD~Eg~d~~V~eaLe~--Lk~~~~~~~VkVLGs~n~~----e~vPWF 139 (532)
.+.++++++|||.+.|. +|+++.+.+. |++.+=+ ++.++.++++. .+....-..|..||++... ..-|||
T Consensus 58 ~R~~s~lK~hGI~~~H~-aRqit~~DF~~FDYI~~M--DesN~~dL~~~a~~~~~~~kakV~Llgsy~~~~~~~I~DPyY 134 (159)
T KOG3217|consen 58 PRTLSILKKHGIKIDHL-ARQITTSDFREFDYILAM--DESNLRDLLRKASNQPKGSKAKVLLLGSYDKNGQKIIEDPYY 134 (159)
T ss_pred hHHHHHHHHcCCcchhh-cccccHhHhhhcceeEEe--cHHHHHHHHHHhccCCCCcceEEEEeeccCCCCCeecCCCCC
Confidence 69999999999998887 5888765543 3333322 34566666653 3322222468889987532 134544
Q ss_pred CCccchhhhhhh
Q psy14226 140 PTHASDLDNCNH 151 (532)
Q Consensus 140 PRkIsDLD~ca~ 151 (532)
- ..++.+.+-.
T Consensus 135 g-~~~~Fe~vy~ 145 (159)
T KOG3217|consen 135 G-GDSKFETVYQ 145 (159)
T ss_pred C-ccccHHHHHH
Confidence 3 4444444433
No 145
>PRK09224 threonine dehydratase; Reviewed
Probab=38.11 E-value=1e+02 Score=34.44 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=48.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
+..-+.|..+++||+|.+.|+.+. -+-|+|+++=|-.....+ ..+|=++..+.+..++.+.|.+..
T Consensus 422 ~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~~~g--~vlvgi~~~~~~~~~~~~~l~~~~ 487 (504)
T PRK09224 422 DERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGADYG--RVLAGFQVPDADEPEFEAFLDELG 487 (504)
T ss_pred ceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCcccc--cEEEEEecChhhHHHHHHHHHHcC
Confidence 455678889999999999999887 688999999984433333 356666665446667777776543
No 146
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=36.90 E-value=24 Score=38.34 Aligned_cols=74 Identities=24% Similarity=0.291 Sum_probs=43.6
Q ss_pred ecccc-ccchhhhhhhcC--CCCccccCCccccccccc-cCCCCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCC
Q psy14226 415 YGAGL-LSSYGELLHAIS--DKPEHRVFDPISTAVQPY-QDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPY 489 (532)
Q Consensus 415 yGAGl-LSS~gE~~~~ls--~~~~~~~fd~~~~~~~~y-~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~ 489 (532)
+|+|. .+|.||+.-++. -.|+++-|..-..-..+. ..-+..-.+|+++|++|+ +++.+-+..+.-+-.+|.||-
T Consensus 74 ~g~g~Dv~S~gEl~~al~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~El-~~l~~~a~~~~~~v~lRInP~ 151 (394)
T COG0019 74 EGSGFDVASLGELELALAAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEEEL-ERLSAIAPGLVARVSLRINPG 151 (394)
T ss_pred hCCCceecCHHHHHHHHHcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCHHHH-HHHHHhccccCceEEEEECCC
Confidence 67776 578899988883 223333333221111110 111233346999999998 455555554445899999985
No 147
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=36.90 E-value=97 Score=33.94 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=19.1
Q ss_pred CccHHHHHHHHHHHCCcceeeee-cc
Q psy14226 62 GMSSLARILKTIEVFKGTVVHLE-TR 86 (532)
Q Consensus 62 kpGALaeILkvFa~~gINLThIE-SR 86 (532)
....+.++|+..+++|++ +.|+ +-
T Consensus 87 ~~~~l~eLl~~lk~~gi~-taI~~Tn 111 (404)
T TIGR03278 87 CYPELEELTKGLSDLGLP-IHLGYTS 111 (404)
T ss_pred cCHHHHHHHHHHHhCCCC-EEEeCCC
Confidence 345789999999999998 6775 43
No 148
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=36.62 E-value=2.9e+02 Score=26.81 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=63.2
Q ss_pred EEEEEEeCC----CccHHHHHHHHHHHC-Cccee----eeecccCCCCCceEE---EEEEEecCcHHHHHHHHHHHhhcC
Q psy14226 53 AALVLRMRE----GMSSLARILKTIEVF-KGTVV----HLETRVSKMAGIQFD---VLVKVDMTRRDLLNLIRSLRQSSS 120 (532)
Q Consensus 53 TSLIFsL~d----kpGALaeILkvFa~~-gINLT----hIESRPSk~~~~eY~---FFVD~Eg~d~~V~eaLe~Lk~~~~ 120 (532)
..+++++-- +...+..+++.++.. ++... -.+|.|.......|. ..++...+-..+..+++.+++..
T Consensus 8 ~~v~i~LGSNlg~~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~g~~q~dFlN~vv~~~T~l~p~~Ll~~L~~IE~~~- 86 (163)
T PRK14092 8 ALAYVGLGANLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVDAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRH- 86 (163)
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHhCCCCeeEEECCCEEeCCCCCCCCchhEEEEEEEeCCCHHHHHHHHHHHHHHc-
Confidence 345666633 455889999999874 55533 347777653321222 12233334466777777776654
Q ss_pred CccEEEecccCccCCCCCCCCccchhhhh--hhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhc
Q psy14226 121 LGGINLLTENNISVKGPWFPTHASDLDNC--NHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY 186 (532)
Q Consensus 121 ~~~VkVLGs~n~~e~vPWFPRkIsDLD~c--a~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~ 186 (532)
|+.. ...|-||.| |||-. .+.+... +.+.-.||....-.|.-. =+++|+-++
T Consensus 87 -------GR~r---~~k~gpRti-DlDIL~~~~~~~~~-~~L~iPHp~~~~R~FVL~--PL~ei~p~~ 140 (163)
T PRK14092 87 -------GRER---PYRNAPRTL-DLDLLLYGEQAIDH-PRLSVPHPRMHERAFVLA--PLCELAPAL 140 (163)
T ss_pred -------CCCC---CcCCCCcee-eeEEeccCCeEecC-CCcccCCcchhhChHHHH--HHHHhCCCC
Confidence 4422 257999875 78842 2222222 245556775544333332 244555444
No 149
>PRK06635 aspartate kinase; Reviewed
Probab=36.31 E-value=94 Score=33.07 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=32.5
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEE
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKV 101 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~ 101 (532)
+.+.+|.|+++++.|+++|||+..|-+=.+......+.|.|+-
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~ 312 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR 312 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH
Confidence 5678999999999999999999998554433223457776653
No 150
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=35.43 E-value=1.3e+02 Score=24.53 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHHHHHHHH
Q psy14226 462 ESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLN 510 (532)
Q Consensus 462 ~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 510 (532)
-+|+++.+++.+-...-...|.++|-..-...-.|.+.+.+..+++..+
T Consensus 21 ~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 21 ISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred CCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence 4899999999888876667899999877777778999999988887765
No 151
>PRK02047 hypothetical protein; Provisional
Probab=35.27 E-value=2.6e+02 Score=24.49 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=41.7
Q ss_pred CCCccHHHHHHHHHHHC--CcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 60 REGMSSLARILKTIEVF--KGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 60 ~dkpGALaeILkvFa~~--gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
.+.++....+.++++.+ ++...+|.+|||++++. ..+-|.+... .+.+.++-++|+...
T Consensus 24 ~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY-~Svtv~v~v~s~eq~~~iY~~L~~~~ 85 (91)
T PRK02047 24 KAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNY-TGLTITVRATSREQLDNIYRALTGHP 85 (91)
T ss_pred eCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeE-EEEEEEEEECCHHHHHHHHHHHhhCC
Confidence 45556677777777777 56678899999986653 2355666654 477888888887764
No 152
>KOG2663|consensus
Probab=35.08 E-value=86 Score=33.05 Aligned_cols=99 Identities=12% Similarity=0.017 Sum_probs=66.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEE--EEEEecCcHHHHHHHHHHHhhcCCccEEEec
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDV--LVKVDMTRRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~F--FVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
.+..|-+-+.|+||-|.++-.+|+.+|.|+- |--.-....+-.| -|-+.|.+.-++.+.+.|++... -++++.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNId---SLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVn--V~aVlD 150 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNID---SLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVN--VYAVLD 150 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCch---heeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhh--hheeee
Confidence 3556666688999999999999999999964 4443322222233 56677888889999999988763 456665
Q ss_pred ccCcc--------CC-CCCCCCccchhhhhhhhhh
Q psy14226 129 ENNIS--------VK-GPWFPTHASDLDNCNHLMT 154 (532)
Q Consensus 129 s~n~~--------e~-vPWFPRkIsDLD~ca~~vL 154 (532)
-.+.. .+ --|-|-...++|.-.|..+
T Consensus 151 yt~e~~VeRELmlakvsllg~d~Fravd~~eh~~t 185 (309)
T KOG2663|consen 151 YTNEPIVERELMLAKVSLLGVDYFRAVDLHEHTLT 185 (309)
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHhhhhhhhhhh
Confidence 43321 01 2477777777776555443
No 153
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=33.48 E-value=2.2e+02 Score=29.69 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=40.3
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-----cHHHHHHHHH-HHh
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-----RRDLLNLIRS-LRQ 117 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-----d~~V~eaLe~-Lk~ 117 (532)
|.+.=+|+||-.+++=+.++++|+|++.+..-=.. ..+.|...+.++.. .+.+++.++. +.+
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~-~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~ 70 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDP-ETGRFFMRVEFQLEGFRLEESSLLAAFKSALAE 70 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 34555899999999999999999999998765432 22223323344432 2556666666 543
No 154
>PRK04374 PII uridylyl-transferase; Provisional
Probab=33.00 E-value=1.3e+02 Score=36.14 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=39.9
Q ss_pred ccCCeEEEEEEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEE-EEec
Q psy14226 48 SAIQTAALVLRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLV-KVDM 103 (532)
Q Consensus 48 sg~dKTSLIFsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFV-D~Eg 103 (532)
...+.|.|-+...|+||-|+++-.+|+.+|+|+. +|-+. +..-.=.||| |-+|
T Consensus 792 ~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~---g~~a~D~F~V~d~~g 847 (869)
T PRK04374 792 AGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF---GERAEDQFQITDEHD 847 (869)
T ss_pred CCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec---CCEEEEEEEEECCCC
Confidence 3346777888889999999999999999999997 66655 3333445788 4444
No 155
>PRK03059 PII uridylyl-transferase; Provisional
Probab=31.54 E-value=1.7e+02 Score=35.01 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=38.0
Q ss_pred cCCeEEEEEEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEEE
Q psy14226 49 AIQTAALVLRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLVK 100 (532)
Q Consensus 49 g~dKTSLIFsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFVD 100 (532)
..+.|.|.+..+|+||-|+++-.+|+.+|+|+. +|-+. ++--.=.|||.
T Consensus 783 ~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~---~~~v~DvF~V~ 833 (856)
T PRK03059 783 RGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL---GERVEDTFLID 833 (856)
T ss_pred CCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec---CCEEEEEEEEc
Confidence 346778888889999999999999999999997 56654 33333458883
No 156
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=30.95 E-value=1.6e+02 Score=26.98 Aligned_cols=97 Identities=22% Similarity=0.399 Sum_probs=55.3
Q ss_pred CCccHHHHHHHHHHHC-Ccceee----eecccCCCCCc-eEE---EEEEEecCcHHHHHHHHHHHhhcCCccEEEecccC
Q psy14226 61 EGMSSLARILKTIEVF-KGTVVH----LETRVSKMAGI-QFD---VLVKVDMTRRDLLNLIRSLRQSSSLGGINLLTENN 131 (532)
Q Consensus 61 dkpGALaeILkvFa~~-gINLTh----IESRPSk~~~~-eY~---FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLGs~n 131 (532)
+....+..++..++.. +++..+ .+|.|...... .|. ..++.+.+...+...++.+++.. |+..
T Consensus 10 ~~~~~l~~A~~~L~~~~~~~~~~~S~~y~t~p~g~~~~~~F~N~v~~~~t~l~~~~ll~~L~~IE~~~--------GR~r 81 (127)
T PF01288_consen 10 DREQNLRQALQALSALPGFGVIRFSSIYETEPVGFESQPDFLNAVVVLETSLSPEELLDLLKQIERRL--------GRDR 81 (127)
T ss_dssp SHHHHHHHHHHHHHCSTTEEEEEEEEEEEE--SSSSSS-CEEEEEEEEEESS-HHHHHHHHHHHHHHT--------TSCS
T ss_pred hHHHHHHHHHHHHhcCCCCCcEEECCCEEECCccCCCCcCeeeeeeeecCCCCHHHHHHHHHHHHHHh--------CCCC
Confidence 4456788999999888 555543 36778764433 233 33344444567777777776654 5543
Q ss_pred ccCCCCCCCCccchhhhhh--hhhhccCCCCCCCCCCCCCh
Q psy14226 132 ISVKGPWFPTHASDLDNCN--HLMTKYEPDLDMNHPGFADQ 170 (532)
Q Consensus 132 ~~e~vPWFPRkIsDLD~ca--~~vL~yg~eld~dHPGFsD~ 170 (532)
. .+|-||. -|||-.. +.++ ..++|.-.||.+.+-
T Consensus 82 ~---~~~~~R~-lDlDil~~~~~~~-~~~~L~lPHp~~~~R 117 (127)
T PF01288_consen 82 S---SKWGPRT-LDLDILLYGDEVI-NEPDLTLPHPRIHER 117 (127)
T ss_dssp T---STTSSCS-EEEEEEEETTB-E-ESSSEEES-TTGGG-
T ss_pred c---CCCCCce-eeeeeEEEeccEE-cCCCcEeeccChhhC
Confidence 2 2899997 5888632 3332 334566778877543
No 157
>PRK07431 aspartate kinase; Provisional
Probab=30.91 E-value=1.6e+02 Score=33.30 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=39.8
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHH
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLR 116 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk 116 (532)
.+.+.+|.++++++.|+++|||+-.|-.-++.....++.|.|+-+- -....++++.++
T Consensus 277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d-~~~~~~~l~~l~ 334 (587)
T PRK07431 277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE-LKKAEAVAEAIA 334 (587)
T ss_pred cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH-HHHHHHHHHHHH
Confidence 3567899999999999999999999965444444456888885421 123344455554
No 158
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=30.76 E-value=66 Score=33.09 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCccEEEecccCccCCCCCCCCccchhhhhhhhhhccCCCCCCCCCC
Q psy14226 108 LLNLIRSLRQSSSLGGINLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPG 166 (532)
Q Consensus 108 V~eaLe~Lk~~~~~~~VkVLGs~n~~e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPG 166 (532)
...+++.|++... ...+||+|..--..-++-|.|.-- .|.|.+..|
T Consensus 31 FMSLlK~LQ~~LT------------c~~~PW~P~~~p~~rrlINEIVl~-EESD~~~~g 76 (232)
T PF11251_consen 31 FMSLLKALQRDLT------------CTSVPWVPPGDPETRRLINEIVLG-EESDEDPDG 76 (232)
T ss_pred HHHHHHHHHHhCc------------CCCCCCCCCCCchHHHHhhhhhhh-hccccCCCC
Confidence 4467888876542 236999998877777776664432 255555443
No 159
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=30.52 E-value=1.3e+02 Score=36.06 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=38.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEEE-Eec
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLVK-VDM 103 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFVD-~Eg 103 (532)
.+.|.|.+...|+||-|+++-++|..+|+|+. +|-+. +..-.=.|||. -+|
T Consensus 812 ~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~---g~~v~D~F~V~d~~g 865 (895)
T PRK00275 812 RPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL---GERVEDVFFITDADN 865 (895)
T ss_pred CCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec---CCEEEEEEEEECCCC
Confidence 45677888889999999999999999999997 66655 33333457773 344
No 160
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.40 E-value=2.4e+02 Score=22.30 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=37.0
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
|++=.+...+|-+.++++.|++.|||+..|-.=++ .-...|.||- ++..++++.|.+
T Consensus 5 svVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s---~~sis~~v~~----~~~~~av~~Lh~ 61 (65)
T cd04918 5 SLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS---KVNISLIVND----SEAEGCVQALHK 61 (65)
T ss_pred EEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc---cceEEEEEeH----HHHHHHHHHHHH
Confidence 44433455689999999999999999977763222 1234455543 455567776654
No 161
>PRK04998 hypothetical protein; Provisional
Probab=30.13 E-value=3.2e+02 Score=23.55 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEE-EEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 60 REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFD-VLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 60 ~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~-FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
+...+.+..+..+|.++.-.-..|.+|||+++. |. +-|.+... .+.+.++-++|++..
T Consensus 23 ~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~Gk--Y~Svtv~v~v~s~eq~~~iY~~L~~~~ 82 (88)
T PRK04998 23 LARPELVDQVVEVVQRHAPGDYTPTVKPSSKGN--YHSVSITITATSIEQVETLYEELAKIE 82 (88)
T ss_pred eCcHhHHHHHHHHHHHhCCCCCCceEccCCCCE--EEEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 455678899999998774444458899987554 43 55666665 478888888887764
No 162
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=30.08 E-value=2e+02 Score=24.65 Aligned_cols=54 Identities=19% Similarity=0.123 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHCCcceeeeecc-------cCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 65 SLARILKTIEVFKGTVVHLETR-------VSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 65 ALaeILkvFa~~gINLThIESR-------PSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
.+.++-+.+.++|-.+.++|.. |++.....|+|++.++++...+.++-+.|+..
T Consensus 20 ~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k~~~G~Y~~~~f~~~~~~i~el~~~lr~~ 80 (93)
T TIGR00166 20 QIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYVLMNFSGEAQVIKEFERTARIN 80 (93)
T ss_pred HHHHHHHHHHhCCCEEEEEEeecceecceEcCCCceEEEEEEEEEeCHHHHHHHHHHhcCC
Confidence 3444555678889888888754 66666777999999999887777777777644
No 163
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=30.01 E-value=55 Score=35.17 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=42.7
Q ss_pred ecccc-ccchhhhhhhcCCC--Ccc-ccCCcccccc-ccccCCCC--c-cceeeeCCHHHHHHHHHHHHHhcCC--Ccee
Q psy14226 415 YGAGL-LSSYGELLHAISDK--PEH-RVFDPISTAV-QPYQDQEY--Q-PIYFVAESFEDAKEKFRRWVSTMSR--PYEV 484 (532)
Q Consensus 415 yGAGl-LSS~gE~~~~ls~~--~~~-~~fd~~~~~~-~~y~i~~~--Q-~~yFv~~sfe~~~~~~~~~~~~~~r--p~~~ 484 (532)
||+|+ .+|.||++.++.-. |.. .-+.+..... -.+-+..- . .+.+++||++|| +++.+.+....+ ...+
T Consensus 64 ~~~g~DvaS~~El~~al~~G~~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL-~~l~~~a~~~~~~~~v~l 142 (409)
T cd06830 64 YNIGLEAGSKPELLAALALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSEL-DLILELAKKLGVKPLLGV 142 (409)
T ss_pred cceeEEeCCHHHHHHHHhcCCCCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHH-HHHHHHHHHcCCCceEEE
Confidence 44776 77888888887322 222 1222211100 00111110 1 247899999997 777788877654 4788
Q ss_pred eecCCc
Q psy14226 485 RFNPYT 490 (532)
Q Consensus 485 ~~~~~t 490 (532)
|.||..
T Consensus 143 Rinp~~ 148 (409)
T cd06830 143 RIKLAS 148 (409)
T ss_pred EEccCC
Confidence 999963
No 164
>PRK03381 PII uridylyl-transferase; Provisional
Probab=29.89 E-value=1.6e+02 Score=34.80 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=37.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEE
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVK 100 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD 100 (532)
+.|.|-+..+|+||-|+++-++|+.+|+|+..-..-.. +..-.=.|||.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~~a~D~F~V~ 754 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GADVVDVFYVT 754 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CCeEEEEEEEE
Confidence 45777788899999999999999999999985544333 33334457874
No 165
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=29.63 E-value=4.1e+02 Score=25.59 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=60.5
Q ss_pred ccHHHHHHHHHHHC-Ccceee----eecccCCCCC-ceEE-EEEEEe--cCcHHHHHHHHHHHhhcCCccEEEecccCcc
Q psy14226 63 MSSLARILKTIEVF-KGTVVH----LETRVSKMAG-IQFD-VLVKVD--MTRRDLLNLIRSLRQSSSLGGINLLTENNIS 133 (532)
Q Consensus 63 pGALaeILkvFa~~-gINLTh----IESRPSk~~~-~eY~-FFVD~E--g~d~~V~eaLe~Lk~~~~~~~VkVLGs~n~~ 133 (532)
...|..+++.+++. ++.+.+ .+|+|..... ..|. --+-++ .+..++.+.++.+++.. |+...
T Consensus 16 ~~~l~~A~~~L~~~~~~~i~~~S~~y~T~P~g~~~q~~FlN~v~~i~T~l~p~~Ll~~l~~IE~~~--------GR~r~- 86 (159)
T PRK10239 16 LEQVNAALKALGDIPESRILAVSSFYRTPPLGPQDQPDYLNAAVALETALAPEELLNHTQRIELQQ--------GRVRK- 86 (159)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHHh--------CCCCC-
Confidence 44688899999876 565433 4778875321 1222 112233 33456777777776543 44211
Q ss_pred CCCCCCCCccchhhhh--hhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhc
Q psy14226 134 VKGPWFPTHASDLDNC--NHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY 186 (532)
Q Consensus 134 e~vPWFPRkIsDLD~c--a~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~ 186 (532)
...|-||.| |||-. .+.+.. .+++.--||....-.|.- .=+++|+-++
T Consensus 87 -~~~~gpRti-DlDIL~y~~~~~~-~~~L~iPHp~~~~R~FVl--~PL~ei~p~~ 136 (159)
T PRK10239 87 -AERWGPRTL-DLDIMLFGNEVIN-TERLTVPHYDMKNRGFML--WPLFEIAPEL 136 (159)
T ss_pred -CcCCCCceE-EEEEEecCCeeec-CCCcccCCcChhhChHHH--HHHHHhCCCC
Confidence 147899885 78842 232222 235667788765555544 2355566544
No 166
>PRK00341 hypothetical protein; Provisional
Probab=29.37 E-value=2.3e+02 Score=24.83 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=42.0
Q ss_pred CCCccHHHHHHHHHHHC-CcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 60 REGMSSLARILKTIEVF-KGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 60 ~dkpGALaeILkvFa~~-gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
.+.++....+++++.++ .++..+|.+|||+++.. ..+-|.+... .+.+.++-++|+...
T Consensus 25 ~~~~~~~~~V~~iv~~~~~~~~~~~~~k~Ss~GkY-~S~tv~i~~~s~~q~~~iy~~L~~~~ 85 (91)
T PRK00341 25 DTGVGFKDLVIEILQKHADVDLSTLAERQSSNGKY-TTVQLHIVATDEDQLQDINSALRATG 85 (91)
T ss_pred cCchhHHHHHHHHHHHhCCCcccceeeccCCCCEE-EEEEEEEEECCHHHHHHHHHHHhhCC
Confidence 35677788888888665 44568899999986552 2355666654 578888999998764
No 167
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=28.54 E-value=2.6e+02 Score=29.71 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=36.7
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|.+.++++.|++++||+..|..=.+. ....|.|+- +++.++++.|++
T Consensus 270 ~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~---~~Is~~V~~----~d~~~a~~~L~~ 321 (401)
T TIGR00656 270 MLGKRGFLARIFGALAERNINVDLISQTPSE---TSISLTVDE----TDADEAVRALKD 321 (401)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEcCCCC---ceEEEEEeH----HHHHHHHHHHHH
Confidence 5678999999999999999999988653322 346677753 334455555544
No 168
>COG5282 Uncharacterized conserved protein [Function unknown]
Probab=28.44 E-value=85 Score=33.79 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=49.7
Q ss_pred CCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccccccccc
Q psy14226 238 PERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPA 317 (532)
Q Consensus 238 ~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~ 317 (532)
.++||..++|++.|+++-+=. -| +=||.+-+| ||.++|-
T Consensus 272 ~~riPs~aal~r~l~rRRa~g-gp-----------------------------------aeq~f~~Ll-----Glelk~~ 310 (359)
T COG5282 272 GERIPSVAALRRTLDRRRASG-GP-----------------------------------AEQTFATLL-----GLELKPR 310 (359)
T ss_pred cccCccHHHHHHHHHHhhccC-Cc-----------------------------------HHHHHHHHh-----hhhcChH
Confidence 589999999999999873332 11 235555555 6666653
Q ss_pred CCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhh
Q psy14226 318 AGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCI 356 (532)
Q Consensus 318 ~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~ 356 (532)
. |=.++.|++.++.++= ..-.=+-.++|+|.|-||=+
T Consensus 311 q-~~r~~~fw~~v~~a~G-m~~rdaVW~hPe~LPt~~el 347 (359)
T COG5282 311 Q-YRRGAAFWEHVTDAAG-MDARDAVWQHPELLPTPDEL 347 (359)
T ss_pred H-HHHHHHHHHHHhhhhh-hhhhhhhccCCccCCChhhc
Confidence 2 3346788887766542 11123457899999999854
No 169
>smart00031 DED Death effector domain.
Probab=28.43 E-value=61 Score=27.28 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHH
Q psy14226 196 YTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLK 252 (532)
Q Consensus 196 YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~ 252 (532)
.|.+|.+.-+.+++.....-.-. ++..++.|..|++.+.+++++...|+++=..+.
T Consensus 14 Lt~~dl~~lkFLc~~~ip~~~le-~~~~ldlf~~Le~~~~l~~~nl~~L~elL~~i~ 69 (79)
T smart00031 14 LDSEELEVLLFLCKDLIPKRKLE-IKTFLDLFSALEEQGLLSEDNLSLLAELLYRLR 69 (79)
T ss_pred cCHHHHHHHHHHhHhhcchhhcc-cCCHHHHHHHHHHcCCCCCccHHHHHHHHHHcC
Confidence 67999999999987543322223 578899999999999999999988888755544
No 170
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=27.77 E-value=1.4e+02 Score=31.80 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=37.1
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
.+.+.||.++++++.+++.|||+..|-+ ..-.-.|.|+- ++..++++.|++.
T Consensus 346 ~~~~~~g~~a~i~~~L~~~gIni~~i~~-----s~~~is~vv~~----~d~~~av~~Lh~~ 397 (401)
T TIGR00656 346 GMVGAPGVASEIFSALEEKNINILMIGS-----SETNISFLVDE----KDAEKAVRKLHEV 397 (401)
T ss_pred CcccCccHHHHHHHHHHHCCCcEEEEEc-----CCCEEEEEEeH----HHHHHHHHHHHHH
Confidence 3567899999999999999999987652 12234455543 4566777777653
No 171
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.52 E-value=1.9e+02 Score=22.94 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=35.5
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+.+|.+.++++.+++.+|++...-+.. -...|+||- ++..++++.|..
T Consensus 10 ~~~~~gv~~~~~~~L~~~~i~~i~~~~s~-----~~is~vv~~----~d~~~av~~LH~ 59 (63)
T cd04920 10 IRSLLHKLGPALEVFGKKPVHLVSQAAND-----LNLTFVVDE----DQADGLCARLHF 59 (63)
T ss_pred cccCccHHHHHHHHHhcCCceEEEEeCCC-----CeEEEEEeH----HHHHHHHHHHHH
Confidence 45679999999999999998886665533 235566664 455667777654
No 172
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=27.34 E-value=4.1e+02 Score=23.39 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHCCcceeeeecc-------cCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 65 SLARILKTIEVFKGTVVHLETR-------VSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 65 ALaeILkvFa~~gINLThIESR-------PSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
.+.++-+.+.+.|-.+.+++++ |++.....|+|.+.++++...+.++-+.|+..-
T Consensus 22 ~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l~~~~ 83 (108)
T PRK00453 22 LVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYVLLNFEAPPAAIAELERLFRINE 83 (108)
T ss_pred HHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEEEEEEEeCHHHHHHHHHHhCCCC
Confidence 3444455666779999999875 566666678899999998877777777776544
No 173
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=27.05 E-value=2.3e+02 Score=24.83 Aligned_cols=65 Identities=9% Similarity=0.044 Sum_probs=45.7
Q ss_pred EEEEEEeC--C--CccHHHHHHHHHHHCCcceeeeecc-------cCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 53 AALVLRMR--E--GMSSLARILKTIEVFKGTVVHLETR-------VSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 53 TSLIFsL~--d--kpGALaeILkvFa~~gINLThIESR-------PSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+.+++... + ..+.+.++-+.+++.|..+++++.. |++.....|++++.++++.+.+.++-..|+-
T Consensus 10 ~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri 85 (97)
T CHL00123 10 TMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKL 85 (97)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCC
Confidence 45555543 1 1345666777789999999998855 6666677799999999987766666666643
No 174
>PRK08210 aspartate kinase I; Reviewed
Probab=26.70 E-value=1.6e+02 Score=31.53 Aligned_cols=37 Identities=8% Similarity=-0.012 Sum_probs=28.4
Q ss_pred CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEE
Q psy14226 60 REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKV 101 (532)
Q Consensus 60 ~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~ 101 (532)
+..+|.|+++++.|+++|||+-.|-+- ..+..|.++.
T Consensus 280 ~~~~g~la~If~~L~~~~I~i~~i~~~-----~~~is~~v~~ 316 (403)
T PRK08210 280 ENAYDLQQEVFKALAEAGISVDFINIF-----PTEVVFTVSD 316 (403)
T ss_pred CCcchHHHHHHHHHHHcCCeEEEEEec-----CceEEEEEcH
Confidence 445999999999999999999999322 1256777763
No 175
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=26.23 E-value=1.9e+02 Score=23.14 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=29.3
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEE
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKV 101 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~ 101 (532)
+.+.+|.+.++++.+++++||+..|..-.+. ..+.|.++-
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~---~~isf~v~~ 50 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE---HSISFVVDE 50 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc---ceEEEEEeH
Confidence 4567899999999999999999888532221 246666654
No 176
>PRK00907 hypothetical protein; Provisional
Probab=26.09 E-value=3e+02 Score=24.39 Aligned_cols=59 Identities=8% Similarity=0.009 Sum_probs=43.2
Q ss_pred CCCccHHHHHHHHHHHCCc--ceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 60 REGMSSLARILKTIEVFKG--TVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 60 ~dkpGALaeILkvFa~~gI--NLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
.+.++-...+++++..+.- +..+|+.|||+++.. ..+-+.+... .+++.++-++|....
T Consensus 25 ~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY-~Svtv~i~ats~eQld~iY~~L~~~~ 86 (92)
T PRK00907 25 TAERGLETELPRLLAATGVELLQERISWKHSSSGKY-VSVRIGFRAESREQYDAAHQALRDHP 86 (92)
T ss_pred cCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEE-EEEEEEEEECCHHHHHHHHHHHhhCC
Confidence 3567888899999988754 678999999986552 2244555554 578888999997754
No 177
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=25.88 E-value=1.4e+02 Score=32.31 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=50.3
Q ss_pred chhhhhhhcCCCC-ccccCCcccccccc-ccCCCC----ccceeeeC---CHHHHHHHHHHHHHhcC-CC----ceeeec
Q psy14226 422 SYGELLHAISDKP-EHRVFDPISTAVQP-YQDQEY----QPIYFVAE---SFEDAKEKFRRWVSTMS-RP----YEVRFN 487 (532)
Q Consensus 422 S~gE~~~~ls~~~-~~~~fd~~~~~~~~-y~i~~~----Q~~yFv~~---sfe~~~~~~~~~~~~~~-rp----~~~~~~ 487 (532)
|.=..++....++ ..+-|.|.++-+.+ ++.|+. |=.=.|++ ||.+|+-.|+.|+..|- .. |...|.
T Consensus 178 s~vq~R~l~~~~~~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~~~~vRfrpsyF 257 (335)
T COG0016 178 SPVQARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGEDVKVRFRPSYF 257 (335)
T ss_pred cHhhHHHHHhCCCCCceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCCCcceEeecCCC
Confidence 3334444444343 56788888888888 666653 33334443 78999999999999987 34 667789
Q ss_pred CCcc-eEEE
Q psy14226 488 PYTQ-RVEV 495 (532)
Q Consensus 488 ~~t~-~~~~ 495 (532)
|||. |+||
T Consensus 258 PFTEPS~Ev 266 (335)
T COG0016 258 PFTEPSAEV 266 (335)
T ss_pred CCCCCeEEE
Confidence 9996 4544
No 178
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=25.36 E-value=2e+02 Score=23.40 Aligned_cols=50 Identities=14% Similarity=0.322 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHHHHHHHHH
Q psy14226 462 ESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNL 511 (532)
Q Consensus 462 ~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 511 (532)
.||++|.+++++-...-..+|.+.|--.....-.+.+-+.+..+++..+.
T Consensus 22 ~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 22 VSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp SHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 48999999999888777899999997766777778888888888877654
No 179
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=24.92 E-value=3.3e+02 Score=29.14 Aligned_cols=85 Identities=16% Similarity=0.127 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccc
Q psy14226 368 DPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQ 447 (532)
Q Consensus 368 ~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~ 447 (532)
+|...+.+.+.|...=-+|..|+..--.. || .++-+||.+- |..|+++++...
T Consensus 40 ~~~il~~l~~~g~G~D~aS~gEl~~al~a------~~-----~~~i~~~~~k--~~~el~~a~~~g-------------- 92 (380)
T TIGR01047 40 FWGVFPILREYLDGCTASGLWEAKLAKEE------FG-----KEIHVYSPAY--SEEDVPEIIPLA-------------- 92 (380)
T ss_pred ChHHHHHHHHHCCcccccCHHHHHHHHHH------CC-----CcEEEECCCC--CHHHHHHHHHcC--------------
Confidence 34466666666643333367776653221 22 5677887666 566888886432
Q ss_pred cccCCCCccceeeeCCHHHHHHHHHHHHHhcCC--CceeeecCC
Q psy14226 448 PYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSR--PYEVRFNPY 489 (532)
Q Consensus 448 ~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~r--p~~~~~~~~ 489 (532)
..++++|++|| +++.+.+....+ +..+|.||.
T Consensus 93 ---------~~i~idS~~el-~~l~~~a~~~~~~~~i~lRinp~ 126 (380)
T TIGR01047 93 ---------DHIIFNSLAQW-ARYRHLVEGKNSAVKLGLRINPE 126 (380)
T ss_pred ---------CEEEECCHHHH-HHHHHHHHhcCCCceEEEEECCC
Confidence 23567899998 466677755544 799999996
No 180
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=24.79 E-value=1.7e+02 Score=28.96 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=37.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeee-ecccCCCCCceEEEEEEEecC
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHL-ETRVSKMAGIQFDVLVKVDMT 104 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThI-ESRPSk~~~~eY~FFVD~Eg~ 104 (532)
-..|++.=.|+||.+.++-..+.+++||+... -+|..+ .++=.-.|.++..
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~--g~~Ai~vl~vD~~ 199 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDI--GNIALLTIEIDKN 199 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCC--CCEEEEEEEeCCC
Confidence 34667777889999999999999999999766 345433 3445556666654
No 181
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=24.01 E-value=1.8e+02 Score=25.38 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeeecCCcce--EEEecC----------hHHHHHHHHHHHHHH
Q psy14226 462 ESFEDAKEKFRRWVSTMSRPYEVRFNPYTQR--VEVLDC----------VDKLENLMSQLNLEM 513 (532)
Q Consensus 462 ~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~--~~~~~~----------~~~~~~~~~~~~~~~ 513 (532)
+..+++.+++.++.+.+.+.+.+.+|.-|.+ |.|+|. ++.+.+++..|+.=.
T Consensus 37 e~l~~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e~~ 100 (107)
T PF03646_consen 37 EELEEAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRELV 100 (107)
T ss_dssp HHHHHHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHHHh
Confidence 6678889999999999999999999999875 467887 567777777776533
No 182
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=23.95 E-value=1e+02 Score=36.68 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=38.6
Q ss_pred ccCCeEEEEEEeCCCccHHHHHHHHHHHCCccee--eeecccCCCCCceEEEEE-EEec
Q psy14226 48 SAIQTAALVLRMREGMSSLARILKTIEVFKGTVV--HLETRVSKMAGIQFDVLV-KVDM 103 (532)
Q Consensus 48 sg~dKTSLIFsL~dkpGALaeILkvFa~~gINLT--hIESRPSk~~~~eY~FFV-D~Eg 103 (532)
...+.|.|=+..+|+||-|++|.++|.+.|+++. ||-+- +..-+=.||| |-+|
T Consensus 779 ~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~---gerv~D~Fyv~~~~g 834 (854)
T PRK01759 779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI---GEKAEDFFILTNQQG 834 (854)
T ss_pred CCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc---CceEEEEEEEECCCC
Confidence 3355777778899999999999999999999986 45442 2222345888 4444
No 183
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=22.98 E-value=2.4e+02 Score=25.95 Aligned_cols=93 Identities=23% Similarity=0.327 Sum_probs=51.3
Q ss_pred CccHHHHHHHHHHHCCcceee----eecccCCCCC-ceEE---EEEEEecCcHHHHHHHHHHHhhcCCccEEEecccCcc
Q psy14226 62 GMSSLARILKTIEVFKGTVVH----LETRVSKMAG-IQFD---VLVKVDMTRRDLLNLIRSLRQSSSLGGINLLTENNIS 133 (532)
Q Consensus 62 kpGALaeILkvFa~~gINLTh----IESRPSk~~~-~eY~---FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLGs~n~~ 133 (532)
....|.+++..++...+.+.+ .||.|..... ..|. ..++...+...+.+.++.+++.. |+..
T Consensus 12 ~~~~l~~A~~~L~~~~~~i~~~S~~y~T~p~g~~~q~~FlN~v~~~~T~l~p~~Ll~~l~~IE~~~--------GR~r-- 81 (127)
T TIGR01498 12 RLKNLRAALAALAALPVRLLIVSSIYETPPWGFTDQPDFLNAVVEVETTLAPRELLALLQAIEAEL--------GRVR-- 81 (127)
T ss_pred HHHHHHHHHHHHhcCCcceEEEccCEEEcCCCCCCCchhheEEEEEEeCCCHHHHHHHHHHHHHHh--------CCCC--
Confidence 446788899999887654433 3666665321 1222 12222223456677777776553 4422
Q ss_pred CCCCCCCCccchhhhh--hhhhhccCCCCCCCCCCC
Q psy14226 134 VKGPWFPTHASDLDNC--NHLMTKYEPDLDMNHPGF 167 (532)
Q Consensus 134 e~vPWFPRkIsDLD~c--a~~vL~yg~eld~dHPGF 167 (532)
...|-||.| |||-. .+.+... +.+.--||..
T Consensus 82 -~~~~~pRtl-DlDIl~~~~~~~~~-~~l~iPHp~~ 114 (127)
T TIGR01498 82 -EFRWGPRTL-DLDILLYGDEVLDE-PDLTVPHPRM 114 (127)
T ss_pred -CCCCCCceE-eEEEEccCCEEecC-CCcCcCCcch
Confidence 257999885 78852 2333322 3566677754
No 184
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=22.85 E-value=3.5e+02 Score=28.37 Aligned_cols=85 Identities=20% Similarity=0.165 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccc
Q psy14226 368 DPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQ 447 (532)
Q Consensus 368 ~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~ 447 (532)
+|..-+.+.+.|...=-||..|+...-.. +| .+.-+||.+- +..|+.+++...
T Consensus 38 ~~~il~~l~~~G~g~DvaS~~El~~a~~~------~~-----~~~i~~~~~k--~~~el~~a~~~~-------------- 90 (346)
T cd06829 38 MWSVFPLIREYLDGTTASSLFEARLGREE------FG-----GEVHTYSPAY--RDDEIDEILRLA-------------- 90 (346)
T ss_pred CHHHHHHHHHhCCccEecCHHHHHHHHHH------CC-----CceEEECCCC--CHHHHHHHHHcC--------------
Confidence 34455666666643333366665543221 12 2555665544 456666665221
Q ss_pred cccCCCCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCC
Q psy14226 448 PYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPY 489 (532)
Q Consensus 448 ~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~ 489 (532)
..++++|++|| +++.+.+.....+..+|.||-
T Consensus 91 ---------~~~~~Ds~~EL-~~l~~~~~~~~~~v~lRvnp~ 122 (346)
T cd06829 91 ---------DHIIFNSLSQL-ERFKDRAKAAGISVGLRINPE 122 (346)
T ss_pred ---------CEEEECCHHHH-HHHHHHHhccCCeEEEEECCC
Confidence 35788999999 455555543455789999995
No 185
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=22.47 E-value=2.9e+02 Score=22.27 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHHHHHHHHH
Q psy14226 462 ESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNL 511 (532)
Q Consensus 462 ~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 511 (532)
-||+++.+++++-...-...|.++|=-.-...-.|.+.+.+..+++..+.
T Consensus 21 ~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~ 70 (81)
T cd05992 21 ISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARR 70 (81)
T ss_pred CCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhh
Confidence 59999999998888765588999996666677788888888888887653
No 186
>PRK06635 aspartate kinase; Reviewed
Probab=21.60 E-value=1.7e+02 Score=31.15 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=36.7
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
.+++.||.++++++.|+++|||+..|-+. .....|.|+- .+..++++.|++
T Consensus 349 ~~~~~~g~~a~i~~~La~~~Ini~~i~ss-----~~~is~vv~~----~d~~~a~~~Lh~ 399 (404)
T PRK06635 349 GMRSHPGVAAKMFEALAEEGINIQMISTS-----EIKISVLIDE----KYLELAVRALHE 399 (404)
T ss_pred CCCCCchHHHHHHHHHHHCCCCEEEEEec-----CCeEEEEEcH----HHHHHHHHHHHH
Confidence 35788999999999999999999998641 2345555544 345566666654
No 187
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=21.59 E-value=39 Score=34.81 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=49.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcCCCCCCCccCCHHHHHHHHHH-HHHHHhhc-cchhhHHHHHHHHHHHhcCCC
Q psy14226 159 DLDMNHPGFADQVYRQRRKDIAEIAFKYNGDPIPHIDYTDSEYATWKAV-FNTVLDLM-PKHFCQEYKDVFAMLQAEGIF 236 (532)
Q Consensus 159 eld~dHPGFsD~~YreRRawIA~Ia~~~~g~~ip~~~YT~~e~~~W~~v-~~~~~~~~-~~~Ac~~y~~~~~~L~~~~~~ 236 (532)
++....+.|.|+-+.+ +++.|++..-|. ..|++|.+.|+.- .+++.+-- +..-+.+|..-++.|.+....
T Consensus 180 ~l~~~~~~F~D~RL~e-------LlfRyraRN~P~-tL~~~E~~~W~~~~~~rL~~~~~~~~tl~~~~~~i~~L~~~~~~ 251 (269)
T PF08411_consen 180 QLAELAFNFEDPRLPE-------LLFRYRARNFPE-TLSEEEQQRWQEYCQQRLTDPDGGWLTLEEYFQEIEELRAEYDD 251 (269)
T ss_dssp GSTT-----SSTHHHH-------HHHHHHHHH-GG-G--HHHHHHHHHHHHHHS-HHH-----HHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCCChhHHH-------HHHHHHHhcChh-hCCHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHHHHhhccC
Confidence 4556778888876654 556666545555 5899999999985 33433332 344588999999999877654
Q ss_pred CCCCCCChHHhhHHHHh
Q psy14226 237 TPERIPQLEEMSNFLKK 253 (532)
Q Consensus 237 ~~d~IPql~~vs~~L~~ 253 (532)
++...-=|+++.++++.
T Consensus 252 ~~~~~~lL~~L~~Y~~~ 268 (269)
T PF08411_consen 252 DEEKQALLEALEDYAES 268 (269)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 44455566777666653
No 188
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=21.29 E-value=3e+02 Score=25.26 Aligned_cols=52 Identities=8% Similarity=0.110 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcC
Q psy14226 67 ARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSS 120 (532)
Q Consensus 67 aeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~ 120 (532)
.++.+.|.++|+-.|+|-|.=.=-+.+.-.|+|=++ +++++++++.+++.|.
T Consensus 14 ~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGve--de~v~~vl~iIk~~c~ 65 (109)
T PF06153_consen 14 DDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVE--DEKVDEVLEIIKENCK 65 (109)
T ss_dssp HHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEE--GGGHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCceEEEEecccceeccCCEEEEEEec--HHHHHHHHHHHHHhhc
Confidence 456777889999999999876545566677877665 6778899999998885
No 189
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=20.60 E-value=2.5e+02 Score=24.63 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHhcC--CCceeeecCCcceEEEecChHHHHHHHHHH
Q psy14226 462 ESFEDAKEKFRRWVSTMS--RPYEVRFNPYTQRVEVLDCVDKLENLMSQL 509 (532)
Q Consensus 462 ~sfe~~~~~~~~~~~~~~--rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 509 (532)
=+|++|.+|+++-.+ +. ..|.++|---....-.|+|-..|+.+++..
T Consensus 25 ~~~~~L~~kI~~~f~-l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 25 LNMDGLREKVEELFS-LSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred CCHHHHHHHHHHHhC-CCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHH
Confidence 489999999988774 55 599999988899999999999999888765
No 190
>PRK09034 aspartate kinase; Reviewed
Probab=20.23 E-value=4.4e+02 Score=29.06 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=36.0
Q ss_pred CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcH-HHHHHHHHHHh
Q psy14226 60 REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRR-DLLNLIRSLRQ 117 (532)
Q Consensus 60 ~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~-~V~eaLe~Lk~ 117 (532)
...+|.++++++.|+++|||+-.| + .......|.|+=+-.+. .+..++++|++
T Consensus 319 ~~~~g~~a~if~~la~~~I~Vd~i---~--ss~~sis~~v~~~~~~~a~~~~l~~el~~ 372 (454)
T PRK09034 319 NREVGFGRKVLQILEDHGISYEHM---P--SGIDDLSIIIRERQLTPKKEDEILAEIKQ 372 (454)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEE---c--CCCcEEEEEEeHHHhhHHHHHHHHHHHHH
Confidence 446899999999999999999998 2 22345777777432111 12566666654
No 191
>PLN02550 threonine dehydratase
Probab=20.05 E-value=3.7e+02 Score=31.15 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=46.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
..-+-|+++++||+|.+.|+.+.. .-|+|..+=|-..... =..||=++....++..+++.|+...
T Consensus 510 E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~--a~vlvGi~v~~~e~~~l~~~l~~~g 574 (591)
T PLN02550 510 ELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETG--ANVLVGIQVPPEEMQEFKSRANALG 574 (591)
T ss_pred eEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCC--ccEEEEEeeCHHHHHHHHHHHHHcC
Confidence 456778999999999999998863 3688888888433222 2256666655567778888887664
No 192
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=20.01 E-value=6.4e+02 Score=25.88 Aligned_cols=65 Identities=8% Similarity=-0.019 Sum_probs=44.3
Q ss_pred EEEEEeCCCcc--HHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEec---CcHHHHHHHHHHHhhc
Q psy14226 54 ALVLRMREGMS--SLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM---TRRDLLNLIRSLRQSS 119 (532)
Q Consensus 54 SLIFsL~dkpG--ALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg---~d~~V~eaLe~Lk~~~ 119 (532)
.+.+...++.+ .+..+++.+++.++.+..+++++.... .+.+.-+++.. ++..+.+++..|....
T Consensus 144 ~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~-~~~ei~a~l~~~~~~~~~le~iv~~L~~~p 213 (225)
T PRK15385 144 ILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQ-GYKEIRAELVGHADYRKTRELIISRIGDND 213 (225)
T ss_pred EEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCC-CeEEEEEEEEecCCchhhHHHHHHHHhCCC
Confidence 44455555444 478888999999999999999887532 23444444433 3567888888887654
Done!