Query psy14226
Match_columns 532
No_of_seqs 357 out of 1384
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:37:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1phz_A Protein (phenylalanine 100.0 3E-152 1E-156 1189.7 33.8 399 45-501 27-429 (429)
2 1toh_A Tyroh, tyrosine hydroxy 100.0 3E-138 9E-143 1053.7 30.2 336 134-524 7-343 (343)
3 1j8u_A Phenylalanine-4-hydroxy 100.0 8E-134 3E-138 1014.9 25.3 321 124-499 4-325 (325)
4 1mlw_A Tryptophan 5-monooxygen 100.0 9E-129 3E-133 971.6 23.7 299 134-487 2-301 (301)
5 2v27_A Phenylalanine hydroxyla 100.0 1.1E-94 3.9E-99 718.3 17.7 226 188-472 12-238 (275)
6 3tk2_A Phenylalanine-4-hydroxy 100.0 9.2E-96 3E-100 734.3 7.6 258 161-478 6-266 (302)
7 3mwb_A Prephenate dehydratase; 99.9 7.6E-23 2.6E-27 207.5 12.9 111 48-183 197-310 (313)
8 2qmx_A Prephenate dehydratase; 99.8 7.4E-20 2.5E-24 183.3 8.8 79 50-130 198-278 (283)
9 3luy_A Probable chorismate mut 99.8 6.7E-19 2.3E-23 179.7 11.4 105 49-164 203-311 (329)
10 2qmw_A PDT, prephenate dehydra 99.8 1.2E-18 4E-23 173.5 9.5 78 50-130 184-266 (267)
11 2ko1_A CTR148A, GTP pyrophosph 97.1 0.0023 7.9E-08 50.9 8.9 66 52-120 5-71 (88)
12 1zpv_A ACT domain protein; str 96.5 0.0086 2.9E-07 48.3 8.1 65 52-119 5-70 (91)
13 2f1f_A Acetolactate synthase i 95.9 0.034 1.1E-06 51.8 9.7 75 53-128 4-78 (164)
14 2pc6_A Probable acetolactate s 95.6 0.05 1.7E-06 50.7 9.2 76 52-128 4-79 (165)
15 1y7p_A Hypothetical protein AF 95.0 0.05 1.7E-06 53.3 7.5 74 52-127 4-79 (223)
16 2fgc_A Acetolactate synthase, 94.8 0.11 3.8E-06 49.8 9.1 67 52-119 29-95 (193)
17 2f06_A Conserved hypothetical 92.9 0.3 1E-05 42.6 7.8 60 53-119 72-132 (144)
18 2jhe_A Transcription regulator 91.8 0.6 2.1E-05 40.6 8.3 59 55-119 3-62 (190)
19 2f06_A Conserved hypothetical 82.6 1.6 5.4E-05 38.0 5.1 34 54-87 8-41 (144)
20 1sc6_A PGDH, D-3-phosphoglycer 79.3 7.2 0.00025 40.5 9.5 73 51-126 330-402 (404)
21 4go7_X Aspartokinase; transfer 79.1 6.1 0.00021 37.6 8.2 59 58-116 42-101 (200)
22 1u8s_A Glycine cleavage system 77.1 8.8 0.0003 34.9 8.5 65 52-116 93-166 (192)
23 2dtj_A Aspartokinase; protein- 74.9 10 0.00035 34.6 8.2 28 58-85 22-49 (178)
24 2dt9_A Aspartokinase; protein- 74.7 10 0.00036 34.0 8.1 59 58-117 23-83 (167)
25 3s1t_A Aspartokinase; ACT doma 74.3 14 0.00048 34.0 9.1 58 58-116 23-82 (181)
26 3k5p_A D-3-phosphoglycerate de 73.3 13 0.00045 39.1 9.6 72 52-127 343-415 (416)
27 1u8s_A Glycine cleavage system 71.4 15 0.0005 33.5 8.4 35 52-86 6-40 (192)
28 1ygy_A PGDH, D-3-phosphoglycer 67.4 12 0.00041 39.9 7.9 62 52-115 454-517 (529)
29 2re1_A Aspartokinase, alpha an 67.1 17 0.00058 32.6 7.8 34 53-86 26-60 (167)
30 1tdj_A Biosynthetic threonine 66.0 8.2 0.00028 41.6 6.3 64 52-119 338-403 (514)
31 3mtj_A Homoserine dehydrogenas 62.3 13 0.00043 39.4 6.8 66 54-119 361-427 (444)
32 3mah_A Aspartokinase; aspartat 61.8 6.8 0.00023 34.9 4.0 51 59-117 28-78 (157)
33 2re1_A Aspartokinase, alpha an 61.1 15 0.0005 33.0 6.2 50 59-117 113-162 (167)
34 2nyi_A Unknown protein; protei 58.4 9 0.00031 35.4 4.4 52 51-103 92-145 (195)
35 3o1l_A Formyltetrahydrofolate 55.2 45 0.0015 33.5 9.1 69 48-117 18-91 (302)
36 3lou_A Formyltetrahydrofolate 54.7 29 0.001 34.6 7.7 65 52-117 10-81 (292)
37 3n0v_A Formyltetrahydrofolate 53.7 48 0.0016 33.0 8.9 65 52-117 8-76 (286)
38 3nrb_A Formyltetrahydrofolate 53.3 34 0.0011 34.1 7.8 65 52-117 7-74 (287)
39 3ab4_A Aspartokinase; aspartat 50.0 89 0.003 32.2 10.6 57 59-117 272-331 (421)
40 3obi_A Formyltetrahydrofolate 49.1 41 0.0014 33.5 7.7 65 52-117 6-75 (288)
41 2dtj_A Aspartokinase; protein- 45.9 24 0.00082 32.1 5.0 58 52-118 97-155 (178)
42 2dt9_A Aspartokinase; protein- 42.6 25 0.00086 31.4 4.6 58 52-118 97-155 (167)
43 3l76_A Aspartokinase; alloster 38.5 59 0.002 35.4 7.5 59 58-117 277-335 (600)
44 3tvi_A Aspartokinase; structur 36.7 47 0.0016 35.0 6.1 55 60-119 309-363 (446)
45 3l76_A Aspartokinase; alloster 31.5 1.1E+02 0.0038 33.3 8.2 39 51-89 443-482 (600)
46 3s1t_A Aspartokinase; ACT doma 31.3 75 0.0025 29.1 5.9 60 50-118 96-156 (181)
47 2j5a_A 30S ribosomal protein S 30.5 1.9E+02 0.0064 24.7 7.9 57 63-119 26-90 (110)
48 2nyi_A Unknown protein; protei 29.6 56 0.0019 30.0 4.8 35 52-86 5-39 (195)
49 3ip0_A 2-amino-4-hydroxy-6-hyd 28.3 1.5E+02 0.0052 27.1 7.3 113 61-187 13-136 (158)
50 1cqm_A Ribosomal protein S6; a 28.2 1.6E+02 0.0054 24.7 6.9 56 64-119 21-83 (101)
51 3p96_A Phosphoserine phosphata 28.0 1.4E+02 0.0047 29.9 7.7 60 54-116 14-78 (415)
52 2hc5_A ORF 99, hypothetical pr 25.9 1.7E+02 0.0057 25.7 6.9 51 462-512 38-100 (117)
53 4go7_X Aspartokinase; transfer 24.6 1E+02 0.0036 29.1 5.7 59 51-118 116-175 (200)
54 2d6f_C Glutamyl-tRNA(Gln) amid 22.7 97 0.0033 34.4 5.7 105 261-380 332-460 (619)
55 2qx0_A 7,8-dihydro-6-hydroxyme 22.3 1.9E+02 0.0065 26.6 6.8 113 61-187 14-137 (159)
56 3r8n_F 30S ribosomal protein S 21.3 1E+02 0.0035 25.8 4.4 56 64-119 20-82 (100)
No 1
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=100.00 E-value=2.8e-152 Score=1189.66 Aligned_cols=399 Identities=48% Similarity=0.852 Sum_probs=381.9
Q ss_pred cccccCCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhh-cCC
Q psy14226 45 EAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQS-SSL 121 (532)
Q Consensus 45 e~~sg~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~-~~~ 121 (532)
+..++.+||||+|+++|+||+|+++|++|+.+|||||||||||++++.|+|.|||||+ + ++.++++|++|++. +
T Consensus 27 e~~tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h~~d~~v~~AL~eL~~~~~-- 103 (429)
T 1phz_A 27 DNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-KRTKPVLGSIIKSLRNDIG-- 103 (429)
T ss_dssp CCCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-GGGHHHHHHHHHHHHHTTC--
T ss_pred CCCCCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-eCCCHHHHHHHHHHHhhcc--
Confidence 3346778999999999999999999999999999999999999999999999999999 7 46699999999998 8
Q ss_pred ccEEEecccCccCCCCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHH
Q psy14226 122 GGINLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSE 200 (532)
Q Consensus 122 ~~VkVLGs~n~~e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e 200 (532)
..+++||+++..+++|||||||+|||+|+|+||+||++||.|||||+|++||+||+|||+||++|+ |+|||+++||++|
T Consensus 104 ~~vkiLGs~~~~~~vPWFPR~IsDLDkc~~~vl~yg~~l~~dhpGf~D~~Yr~RR~~ia~ia~~~~~g~~~~~v~Yt~~e 183 (429)
T 1phz_A 104 ATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYTEEE 183 (429)
T ss_dssp CCEEEEETTCCTTCEECCCSBGGGGGTTTTCCC------CTTSTTTTCHHHHHHHHHHHHHHHTCCTTSCCCCCCCCHHH
T ss_pred ceEEECCCcCccccCCCCCccccchhhhhhhheeccccccccCCCCCCHHHHHHHHHHHHHHHhCcCCCCCCcccCCHHH
Confidence 489999986556679999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhH
Q psy14226 201 YATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEE 280 (532)
Q Consensus 201 ~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~ 280 (532)
|+||++||++|++++|+|||++|++|+++|+++|||++|+||||+|||++|+++|||+++||+
T Consensus 184 ~~~W~~l~~~~~~l~~~~Ac~eyl~gl~~L~~~~g~~~d~IPql~~vs~~L~~~TGw~~~pV~----------------- 246 (429)
T 1phz_A 184 KQTWGTVFRTLKALYKTHACYEHNHIFPLLEKYCGFREDNIPQLEDVSQFLQTCTGFRLRPVA----------------- 246 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHSCCBTTBCCCHHHHHHHHHHHHSCEEEECS-----------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEEEecc-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhh
Q psy14226 281 EVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELL 360 (532)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~ 360 (532)
||||+++||++||+|||||||||||+++|+||||||||||++
T Consensus 247 --------------------------------------gli~~~~F~~~LA~r~F~~t~~iR~~~~~~YtpEPDi~He~~ 288 (429)
T 1phz_A 247 --------------------------------------GLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELL 288 (429)
T ss_dssp --------------------------------------SCCCHHHHHHHHTTTEEEECCCCCCTTCTTCCSSCCHHHHHH
T ss_pred --------------------------------------ccCCHHHHHHHHhccccceeeeecCccccccCCCcchhHHHh
Confidence 999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCC
Q psy14226 361 GHMPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFD 440 (532)
Q Consensus 361 GH~P~l~~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd 440 (532)
||||||+||.||+|+|+||++|+||+++++++|+||||||||||||+++|++||||||||||+||+.||||++|+++|||
T Consensus 289 GH~PlL~~p~fA~f~q~~G~~~l~a~~~~i~~LarlyWfTVEFGLi~~~~~lk~YGAGlLSS~gE~~~~ls~~p~~~pfd 368 (429)
T 1phz_A 289 GHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLE 368 (429)
T ss_dssp HTHHHHTSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECC
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCHHHHHHHhhhheeeeeeceeccCCceeeeccccccChhHHHHhcCCCCeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHH
Q psy14226 441 PISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDK 501 (532)
Q Consensus 441 ~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~ 501 (532)
|+.+++|+|+|++|||+|||++||++|++++++|+++|+|||.|+||||||+|||||++++
T Consensus 369 ~~~~~~~~y~i~~~Qp~yFv~~sf~~l~~~~~~f~~~~~~pf~~~y~~~t~~~~~~~~~~~ 429 (429)
T 1phz_A 369 LEKTACQEYSVTEFQPLYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQ 429 (429)
T ss_dssp HHHHTTCCCCSSSSCSEEEEESCHHHHHHHHHHHHTTSCCSSEEEEETTTTEEEEECCC--
T ss_pred HHHHcCCCCCCCCcccceEEeCCHHHHHHHHHHHHHhCCCCcceeeCCCccEEEecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 2
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Probab=100.00 E-value=2.5e-138 Score=1053.72 Aligned_cols=336 Identities=62% Similarity=1.096 Sum_probs=322.0
Q ss_pred CCCCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHHHHHHHHH
Q psy14226 134 VKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWKAVFNTVL 212 (532)
Q Consensus 134 e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~~v~~~~~ 212 (532)
.+||||||+|+|||+|+|+||+||++|++|||||+|++||+||++||+||++|+ |+|||+++||++||+||++||++|+
T Consensus 7 ~~~pwfpr~i~dld~~~~~~~~~~~~l~~dHpgf~D~~Yr~RR~~~a~~a~~y~~g~~~p~v~YT~eE~~~W~~l~~r~~ 86 (343)
T 1toh_A 7 DKVPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKLIAEIAFQYKHGEPIPHVEYTAEEIATWKEVYVTLK 86 (343)
T ss_dssp -CCCCCCSBGGGGGGC-----------CTTSTTTTCHHHHHHHHHHHHHHHHCCTTSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHhhhchheeccCccCCCCCCCCCHHHHHHHHHHHHHHHhCcCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhH
Q psy14226 213 DLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESK 292 (532)
Q Consensus 213 ~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 292 (532)
+++|+|||++|++|+++|+++||+++|+||||+|||++|+++|||+++||+
T Consensus 87 ~l~~~~Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~----------------------------- 137 (343)
T 1toh_A 87 GLYATHACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKERTGFQLRPVA----------------------------- 137 (343)
T ss_dssp HHHHHHBCHHHHHHHHHHHHHSCCBTTBCCCHHHHHHHHHHHTSCEEEECS-----------------------------
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEEEecC-----------------------------
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCCCCChhHH
Q psy14226 293 EAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFA 372 (532)
Q Consensus 293 ~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~l~~p~fA 372 (532)
||||+++||++||+|||||||||||+++|+||||||||||++||||||+||+||
T Consensus 138 --------------------------Gli~~~~Ff~~LA~RvFp~tqyIR~~~~~~YtpEPDifHElfGHvPlLadP~FA 191 (343)
T 1toh_A 138 --------------------------GLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADRTFA 191 (343)
T ss_dssp --------------------------SCCCHHHHHHHHTTTEEEECCCCCCTTCTTCCSSCCHHHHHHHTHHHHTSHHHH
T ss_pred --------------------------ccCCHHHHHHHHhccccceeeeecCccccCCCCCchhHHHHhcccccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccccccCC
Q psy14226 373 QFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQ 452 (532)
Q Consensus 373 ~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~ 452 (532)
+|+|+||++|+||+++++++|+||||||||||||+++|++||||||||||+||+.||||++|+++||||+.+++|+|+|+
T Consensus 192 ~f~q~~G~~~l~As~~~i~~LarlYWfTVEFGLi~e~g~lKaYGAGlLSS~GEl~~als~~p~~~pfd~~~~~~t~Y~I~ 271 (343)
T 1toh_A 192 QFSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQ 271 (343)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHHTCCCCSS
T ss_pred HHHHHHHHHhcCCCHHHHHHHhhheeeeeecceeccCCceEEecccccCchHHHHHHcCCCCcccCCCHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14226 453 EYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNLEMLHLNTAVNKLR 524 (532)
Q Consensus 453 ~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 524 (532)
+|||+|||++||++|++++++|+++|+|||+|+||||||||||||++++|+++++++++||++|++||+||+
T Consensus 272 ~~Qp~YFV~eSfe~l~e~l~~fa~~~~rpf~~~y~p~t~~i~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 343 (343)
T 1toh_A 272 TYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDELHTLAHALSAIS 343 (343)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHTSCCSCEEEEETTTTEEEEECSHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccceEEeCCHHHHHHHHHHHHHhCCCCceeeeCCCcceEEecCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=100.00 E-value=8.2e-134 Score=1014.91 Aligned_cols=321 Identities=54% Similarity=0.968 Sum_probs=305.1
Q ss_pred EEEecccCccCCCCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHH
Q psy14226 124 INLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYA 202 (532)
Q Consensus 124 VkVLGs~n~~e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~ 202 (532)
|+.+..+++..+||||||+|+|||+|+|+||+||++|++|||||+|++||+||++||+||++|+ |+|||+++||++||+
T Consensus 4 ~~~~~~~~~~~~~pwfpr~i~dld~~~~~~~~~~~~l~~dhpgf~D~~Yr~RR~~~a~~a~~y~~g~~~~~v~YT~eE~~ 83 (325)
T 1j8u_A 4 VHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYMEEEKK 83 (325)
T ss_dssp ------------CCCCCSBGGGGGGGGGSSCSSCGGGSTTSTTTTCHHHHHHHHHHHHHHHHCCTTSCCCCCCCCHHHHH
T ss_pred ccccccccCCCCCCCCCCCHHHHHhhhchheeccCccCCCCCCCCCHHHHHHHHHHHHHHHhCcCCCCCCcccCCHHHHH
Confidence 3444443334679999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHH
Q psy14226 203 TWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEV 282 (532)
Q Consensus 203 ~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~ 282 (532)
||++||++|++++|+|||++|++|+++|+++||+++|+||||+|||++|+++|||+++||+
T Consensus 84 ~W~~l~~r~~~l~~~~Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~------------------- 144 (325)
T 1j8u_A 84 TWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGFRLRPVA------------------- 144 (325)
T ss_dssp HHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHHCCBTTBCCCHHHHHHHHHHHHSCEEEECC-------------------
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEEEecc-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCC
Q psy14226 283 ILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGH 362 (532)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH 362 (532)
||||+++||++||+|||||||||||+++|+||||||||||++||
T Consensus 145 ------------------------------------Gli~~~~F~~~LA~R~Fp~tqyIR~~~~~~YtpEPDifHEl~GH 188 (325)
T 1j8u_A 145 ------------------------------------GLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGH 188 (325)
T ss_dssp ------------------------------------SCCCHHHHHHHHHTTEEEECCCCCCTTCTTCCSSCCHHHHHHHT
T ss_pred ------------------------------------ccCCHHHHHHHHhcCccceeeeecCccccCCCCCchhHHHHhcc
Confidence 99999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCcc
Q psy14226 363 MPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPI 442 (532)
Q Consensus 363 ~P~l~~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~ 442 (532)
||||+||+||+|+|+||++|++|+++++++|+||||||||||||+++|++||||||||||+||+.||||++|+++||||+
T Consensus 189 vPlLadP~FA~f~q~~G~~~l~As~~~i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~GEl~~als~~p~~~pfd~~ 268 (325)
T 1j8u_A 189 VPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELE 268 (325)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCHHHHHHHhhheeeeeeeeeeccCCceEEecceeecChhHHHHhcCCCCeeccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCccceeeeCCHHHHHHHHHHHHHhcCCCceeeecCCcceEEEecCh
Q psy14226 443 STAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCV 499 (532)
Q Consensus 443 ~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~~~~~~~ 499 (532)
.+++|+|+|++|||+|||++||++|++++++|+++|+|||.|+||||||||||||++
T Consensus 269 ~~~~t~Y~I~~~Qp~YFV~~Sfe~l~~~l~~fa~~~~rpf~~~y~~~t~~v~~~~~~ 325 (325)
T 1j8u_A 269 KTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNT 325 (325)
T ss_dssp HHTTCCCCSSSCCSEEEEESCHHHHHHHHHHHHTTSCCSSCEEEETTTTEEEEC---
T ss_pred HHcCCCCCCCCcccceEEeCCHHHHHHHHHHHHHhCCCCceeeeCCCCceEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999974
No 4
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A* 3hfb_A* 3e2t_A*
Probab=100.00 E-value=9.4e-129 Score=971.59 Aligned_cols=299 Identities=55% Similarity=0.981 Sum_probs=287.8
Q ss_pred CCCCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC-CCCCCCccCCHHHHHHHHHHHHHHH
Q psy14226 134 VKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEYATWKAVFNTVL 212 (532)
Q Consensus 134 e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~-g~~ip~~~YT~~e~~~W~~v~~~~~ 212 (532)
++||||||+|+|||+|+|+||+||++|++|||||+|++||+||++||+||++|+ |+|||+++||++||+||++||++|+
T Consensus 2 ~~~~wfp~~~~dld~~~~~~~~~~~~l~~dhpgf~D~~Yr~RR~~~a~~a~~y~~g~~~p~v~YT~eE~~~W~~l~~r~~ 81 (301)
T 1mlw_A 2 ESVPWFPKKISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPKVEFTEEEIKTWGTVFRELN 81 (301)
T ss_dssp -CCCCCCSSGGGGGGTTTCCCBCSSCCCTTSTTTTCHHHHHHHHHHHHHHHHCCTTSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHhhhhhheeccCcCCCCCCCCCCHHHHHHHHHHHHHHHhCcCCCCCCcccCCHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhH
Q psy14226 213 DLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESK 292 (532)
Q Consensus 213 ~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 292 (532)
+++|+|||++|++|+++|+++||+++|+||||+|||++|+++|||+++||+
T Consensus 82 ~l~~~~Ac~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~----------------------------- 132 (301)
T 1mlw_A 82 KLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKERTGFSIRPVA----------------------------- 132 (301)
T ss_dssp HHHHHHBCHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHTSCEEEECS-----------------------------
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHhccCCEEEecC-----------------------------
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCCCCChhHH
Q psy14226 293 EAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFA 372 (532)
Q Consensus 293 ~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~l~~p~fA 372 (532)
||||+++||++||+|||||||||||+++|+||||||||||++||||||+||+||
T Consensus 133 --------------------------Gli~~~~F~~~LA~R~Fp~t~yIR~~~~~~YtpEPDi~HEl~GHvPlLadP~FA 186 (301)
T 1mlw_A 133 --------------------------GYLSPRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEPSFA 186 (301)
T ss_dssp --------------------------SBCCHHHHHHHHTTTEEEECCCCCCTTCTTCCSSCCHHHHHHHTHHHHTSHHHH
T ss_pred --------------------------ccCCHHHHHHHHhcCccceeeeecCccccCCCCCchhHHHHhcccccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhhhhcCCCCccccCCccccccccccCC
Q psy14226 373 QFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQ 452 (532)
Q Consensus 373 ~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~ 452 (532)
+|+|+||++|++|+++++++|+||||||||||||+++|++||||||||||+||+.||||++|+++||||+.+++|+|+|+
T Consensus 187 ~f~q~~G~~~l~as~~~i~~LarlYWfTVEFGLi~e~~~lkaYGAGlLSS~gEl~~als~~p~~~pfd~~~~~~t~Y~I~ 266 (301)
T 1mlw_A 187 QFSQEIGLASLGASEEAVQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLIT 266 (301)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSTTSEEEECCHHHHTTSCCCSS
T ss_pred HHHHHHHHHhcCCCHHHHHHHhhhheeeeecceeccCCceEEeccccccChHHHHHHcCCCCeecCCCHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeCCHHHHHHHHHHHHHhcCCCceeeec
Q psy14226 453 EYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFN 487 (532)
Q Consensus 453 ~~Q~~yFv~~sfe~~~~~~~~~~~~~~rp~~~~~~ 487 (532)
+|||+|||++||++|++++++|+++|+|||+||||
T Consensus 267 ~~Qp~YFV~~Sfe~l~~~~~~fa~~~~rpf~~~y~ 301 (301)
T 1mlw_A 267 TFQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYN 301 (301)
T ss_dssp SCCSEEEECSCHHHHHHHHHHHHTTC---------
T ss_pred CCccceEEECCHHHHHHHHHHHHHhCCCCcceeCC
Confidence 99999999999999999999999999999999998
No 5
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Probab=100.00 E-value=1.1e-94 Score=718.34 Aligned_cols=226 Identities=32% Similarity=0.583 Sum_probs=223.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCCCCCChHHhhHHHHhccCceEeecCccch
Q psy14226 188 GDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLT 267 (532)
Q Consensus 188 g~~ip~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d~IPql~~vs~~L~~~tG~~~~pv~~~~~ 267 (532)
.+++|+++||++||+||++||++|+++++++||++|++|+++| |++.|+||||+|||++|+++|||+++||+
T Consensus 12 ~~~~~~~~YT~eE~~~W~~l~~r~~~l~~~~Ac~eyl~gl~~L----gl~~d~IPql~dvn~~L~~~TGw~~~pV~---- 83 (275)
T 2v27_A 12 PDEHGFIEWSTEENLIWQELFTRQIACIKDKACDEYHEGLAKL----NLPTDRIPQLDEVSKVLKVSTGWECYPVP---- 83 (275)
T ss_dssp CCTTSCCCCCHHHHHHHHHHHHHHHHHHTTTBCHHHHHHHHHH----CCCSSSCCCHHHHHHHHHHHHSCEEEEEC----
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHc----CCCCCCCCCHHHHHHHHHhccCCEEeecc----
Confidence 5899999999999999999999999999999999999999999 48999999999999999999999999999
Q ss_pred hhhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCCCCChHHHHHHhhcccccccccccCCCCC
Q psy14226 268 ARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTP 347 (532)
Q Consensus 268 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~~~~Fl~~la~r~F~~tqyiR~~~~~ 347 (532)
||||+++||++||+|||||||||||+++|
T Consensus 84 ---------------------------------------------------Gli~~~~Ff~~LA~R~Fp~t~yIR~~~~~ 112 (275)
T 2v27_A 84 ---------------------------------------------------ALIGFGEFFRLLSEKKFPVATFIRSREEM 112 (275)
T ss_dssp ---------------------------------------------------SCCCHHHHHHHHHTTEEEEECCCCCSTTT
T ss_pred ---------------------------------------------------ccCCHHHHHHHHhcCccceeeeecCcccc
Confidence 99999999999999999999999999999
Q ss_pred CCCCCchhhHhhhCCCCCCCChhHHHHHHHHhhhhcCCCHHHHHHHhhhheeeeEeeeeecCCceeEeccccccchhhhh
Q psy14226 348 FHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELL 427 (532)
Q Consensus 348 ~ytpePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~a~~~~~~~l~~~yWfTvEfGL~~e~g~~kayGAGlLSS~gE~~ 427 (532)
+||||||||||++||||||+||+||+|+|+||++|++|+++++++|+||||||||||||+++|++||||||||||+||++
T Consensus 113 ~YtpEPDifHEl~GHvPlLadP~FA~f~q~~G~~~l~A~~~~~~~LarlYWfTVEFGLi~e~~~lkaYGAGiLSS~gEl~ 192 (275)
T 2v27_A 113 DYLQEPDIFHEIFGHCPLLTNSSFANYTEAYGKMGLNATKEQRVFLARLYWFTIEFGLLDTPKGLRIYGGGVLSSPGETD 192 (275)
T ss_dssp TCCSSCCHHHHHHHTGGGGGSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCEEEETTEEEECCHHHHTCHHHHH
T ss_pred cCCCcchhHHHHhcchHhhcCHHHHHHHHHHHHHHhCCCHHHHHHHhhhhheeeeeeeecCCCceEEeccchhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc-CCCCccccCCccccccccccCCCCccceeeeCCHHHHHHHHH
Q psy14226 428 HAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFR 472 (532)
Q Consensus 428 ~~l-s~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~ 472 (532)
||+ |++|+++||||+.+++|+|+|++|||+|||++||++|+++++
T Consensus 193 ~al~s~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFv~~sfe~l~~~~~ 238 (275)
T 2v27_A 193 YAMNNTDVDRKPFDILDVLRTPYRIDIMQPIYYMLTKVSDLDEIRK 238 (275)
T ss_dssp HHHHCSSCEEEECCHHHHHTCCCCTTSCCSEEEEESSGGGGHHHHH
T ss_pred HHhcCCCCeeccCCHHHHhCCCCCCCCCCCCeEEeCCHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999
No 6
>3tk2_A Phenylalanine-4-hydroxylase; protein-substate complex, mixed alpha, beta, tetrahydrobiopterin, iron (II), molecular OX hydroxylation; HET: PHE; 1.35A {Chromobacterium violaceum} PDB: 3tk4_A 3tcy_A* 1ltz_A* 1ltv_A 1ltu_A*
Probab=100.00 E-value=9.2e-96 Score=734.35 Aligned_cols=258 Identities=28% Similarity=0.518 Sum_probs=240.7
Q ss_pred CCCCCCCCChHHHHHHH-HHHHHhhhcCCCCCCCccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcCCCCCC
Q psy14226 161 DMNHPGFADQVYRQRRK-DIAEIAFKYNGDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPE 239 (532)
Q Consensus 161 d~dHPGFsD~~YreRRa-wIA~Ia~~~~g~~ip~~~YT~~e~~~W~~v~~~~~~~~~~~Ac~~y~~~~~~L~~~~~~~~d 239 (532)
-+|||||.+++|+.||. -++..|.+|. .|||+++||++||+||++||++|++++++|||++|++|+++|+ ++.|
T Consensus 6 ~~~~~~f~~~~~~~r~~~~~~~~a~dy~-~pqp~~~YT~~E~~~W~~l~~r~~~l~~~~Ac~eyl~gl~~l~----~~~d 80 (302)
T 3tk2_A 6 MNDRADFVVPDITTRKNVGLSHDANDFT-LPQPLDRYSAEDHATWATLYQRQCKLLPGRACDEFMEGLERLE----VDAD 80 (302)
T ss_dssp ------CCCCCHHHHHTTTCCCCTTTCC-CCCCGGGCCHHHHHHHHHHHHHHHHHCTTTBCHHHHHHHHHTT----CCSS
T ss_pred cCCCCCCcchhhhhhcccccchhhhcCc-CCCCcccCCHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHcC----CCcc
Confidence 35999999999998886 3666677776 7999999999999999999999999999999999999998884 8999
Q ss_pred CCCChHHhhHHHHhccCceEeecCccchhhhhhhccCchhHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccccccCC
Q psy14226 240 RIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAG 319 (532)
Q Consensus 240 ~IPql~~vs~~L~~~tG~~~~pv~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~G 319 (532)
+||||+|||++|+++|||+++||+ |
T Consensus 81 ~IPql~~vn~~L~~~TGw~l~pV~-------------------------------------------------------G 105 (302)
T 3tk2_A 81 RVPDFNKLNQKLMAATGWKIVAVP-------------------------------------------------------G 105 (302)
T ss_dssp SCCCHHHHHHHHHHHHSCEEEEES-------------------------------------------------------S
T ss_pred cCCCHHHHHHHHHhhcCcEEEecC-------------------------------------------------------c
Confidence 999999999999999999999999 9
Q ss_pred CCChHHHHHHhhcccccccccccCCCCCCCCCCchhhHhhhCCCCCCCChhHHHHHHHHhhhhcCCCH-HHHHHHhhhhe
Q psy14226 320 LLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASD-EEIEKLSTVYW 398 (532)
Q Consensus 320 ll~~~~Fl~~la~r~F~~tqyiR~~~~~~ytpePD~~He~~GH~P~l~~p~fA~f~q~~G~~~l~a~~-~~~~~l~~~yW 398 (532)
|||+++||++||+|||||||||||+++|+||||||||||++||||||+||+||+|+|+||++|++|++ +++++|+||||
T Consensus 106 li~~~~Ff~~LA~R~Fp~t~~IR~~~~~~YtpEPDifHEl~GHvPlLanp~fA~f~q~~G~~~l~A~~~~~i~~LarlyW 185 (302)
T 3tk2_A 106 LIPDDVFFEHLANRRFPVTWWLREPHQLDYLQEPDVFHDLFGHVPLLINPVFADYLEAYGKGGVKAKALGALPMLARLYW 185 (302)
T ss_dssp SCCHHHHHHHHHTTEEEEECCCCCGGGTTCCSSCCHHHHHHHHSGGGGSHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCcccCcccccCCCcCCCCCCCccccchhcccccccCHHHHHHHHHHHHHhhccCCHHHHHHhhheeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 67999999999
Q ss_pred eeeEeeeeecCCceeEeccccccchhhhhhhc-CCCCccccCCccccccccccCCCCccceeeeCCHHHHHHHHHHHHHh
Q psy14226 399 FTVEFGLCKENGEVKAYGAGLLSSYGELLHAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVST 477 (532)
Q Consensus 399 fTvEfGL~~e~g~~kayGAGlLSS~gE~~~~l-s~~~~~~~fd~~~~~~~~y~i~~~Q~~yFv~~sfe~~~~~~~~~~~~ 477 (532)
||||||||+++|++||||||||||+||+.||| |++|+++||||+.+++|+|+|++|||+|||++||++|+++++.+...
T Consensus 186 fTVEFGLi~~~~~~kiYGAGlLSS~gE~~~~l~s~~p~~~pfd~~~~~~~~y~i~~~Qp~yFv~~sfe~L~d~~~~df~~ 265 (302)
T 3tk2_A 186 YTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQKTYFVIDSFKQLFDATAPDFAP 265 (302)
T ss_dssp HTTTTCEECCTTCCEECCHHHHTCSSHHHHHHHCSSSEEEECCHHHHHTBCCCSSSCCSEEEEESCHHHHHHHTCSCCHH
T ss_pred EEEEEEEEecCCceEEEeeeccCCHHHHHHHhcCCCCcccCCCHHHHhcCCCCcCCCCCCeEEeCCHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999 88999999999999999999999999999999999999998766544
Q ss_pred c
Q psy14226 478 M 478 (532)
Q Consensus 478 ~ 478 (532)
+
T Consensus 266 l 266 (302)
T 3tk2_A 266 L 266 (302)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=99.88 E-value=7.6e-23 Score=207.49 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=99.8
Q ss_pred ccCCeEEEEEEeC-CCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccE
Q psy14226 48 SAIQTAALVLRMR-EGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGI 124 (532)
Q Consensus 48 sg~dKTSLIFsL~-dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~V 124 (532)
++.+||||+|+++ |+||+|+++|++|+.+|||||||||||+++++|+|.||||++|| ++.++++|++|+..+ ..+
T Consensus 197 ~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~--~~~ 274 (313)
T 3mwb_A 197 TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRIS--PAT 274 (313)
T ss_dssp CSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHC--TTC
T ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhc--CcE
Confidence 5678999999996 89999999999999999999999999999999999999999996 689999999999998 489
Q ss_pred EEecccCccCCCCCCCCccchhhhhhhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHh
Q psy14226 125 NLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIA 183 (532)
Q Consensus 125 kVLGs~n~~e~vPWFPRkIsDLD~ca~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia 183 (532)
|+||+ ||+.- + .....++|.+|++|.++|+|++++-
T Consensus 275 kiLGs---------Yp~~~-------------~-~~~~~~~~~~~~~~~~~~~w~~~~~ 310 (313)
T 3mwb_A 275 RFLGS---------YARAD-------------K-QPAVVAPHTSDAAFASAHAWVDSIL 310 (313)
T ss_dssp EEEEE---------EECTT-------------C-CCCCCCTTCSHHHHHHHHHHHHHHH
T ss_pred EEEee---------eecCc-------------c-CCcccCCCCCCcchhHHHHHHHHhh
Confidence 99999 78651 1 2345779999999999999999874
No 8
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=99.79 E-value=7.4e-20 Score=183.31 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccEEEe
Q psy14226 50 IQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 50 ~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
.+||||+|+++|+||+|+++|++|+.+|||||||||||++++.|+|.|||||+|+ ++.++++|++|+..+ ..+|+|
T Consensus 198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~--~~~kiL 275 (283)
T 2qmx_A 198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFA--TMVKVL 275 (283)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTC--SEEEEE
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhc--CeEEEe
Confidence 5899999999999999999999999999999999999999999999999999996 588999999999988 489999
Q ss_pred ccc
Q psy14226 128 TEN 130 (532)
Q Consensus 128 Gs~ 130 (532)
|++
T Consensus 276 GsY 278 (283)
T 2qmx_A 276 GSY 278 (283)
T ss_dssp EEE
T ss_pred eee
Confidence 993
No 9
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=99.77 E-value=6.7e-19 Score=179.73 Aligned_cols=105 Identities=10% Similarity=0.093 Sum_probs=89.2
Q ss_pred cCCeEEEEEEeC--CCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccE
Q psy14226 49 AIQTAALVLRMR--EGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGI 124 (532)
Q Consensus 49 g~dKTSLIFsL~--dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~V 124 (532)
+.+|||++|.++ |+||+|+++|++|+.+|||||||||||+++++|+|.||||++|+ ++.++++|++|+..+ ..+
T Consensus 203 ~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~--~~~ 280 (329)
T 3luy_A 203 NVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHG--DWA 280 (329)
T ss_dssp CCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTT--CEE
T ss_pred CCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhC--CeE
Confidence 347899998886 47999999999999999999999999999999999999999997 689999999999988 489
Q ss_pred EEecccCccCCCCCCCCccchhhhhhhhhhccCCCCCCCC
Q psy14226 125 NLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNH 164 (532)
Q Consensus 125 kVLGs~n~~e~vPWFPRkIsDLD~ca~~vL~yg~eld~dH 164 (532)
|+||+ ||+.-.........++..|.++-.|.
T Consensus 281 kiLGs---------Yp~~~~~~~~~~~~~~~~g~~~~~~~ 311 (329)
T 3luy_A 281 KTLAV---------YPRREHPNPPVTSWMLPQGGVRLDDS 311 (329)
T ss_dssp EEEEE---------EECCCCCCCCGGGCCCCSSCCCCCTT
T ss_pred EEEee---------ccCCCcCCCCccceeccCCcccccCC
Confidence 99999 66655555555566777776665443
No 10
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=99.75 E-value=1.2e-18 Score=173.50 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=74.2
Q ss_pred CCeEEEEEEe---CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC--cHHHHHHHHHHHhhcCCccE
Q psy14226 50 IQTAALVLRM---REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT--RRDLLNLIRSLRQSSSLGGI 124 (532)
Q Consensus 50 ~dKTSLIFsL---~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~--d~~V~eaLe~Lk~~~~~~~V 124 (532)
.+||||+|++ +|+||+|+++|+.|+.+|||||||||||++++.|+|.||||++ + ++.++++|++|+..+ ..+
T Consensus 184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~--~~~ 260 (267)
T 2qmw_A 184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLD--FKV 260 (267)
T ss_dssp SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTT--EEE
T ss_pred CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhc--CeE
Confidence 6899999999 8999999999999999999999999999999999999999999 7 588999999999988 489
Q ss_pred EEeccc
Q psy14226 125 NLLTEN 130 (532)
Q Consensus 125 kVLGs~ 130 (532)
|+||++
T Consensus 261 kiLGsY 266 (267)
T 2qmw_A 261 EMIGAF 266 (267)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 999984
No 11
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.11 E-value=0.0023 Score=50.90 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=51.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhcC
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSSS 120 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~~ 120 (532)
.+.|.+..+|+||.|+++.+.|++.|+|+..+...+... .....+.++.. ...+.++++.|++...
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~---~~~~~i~v~~~~~~~l~~l~~~L~~~~~ 71 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG---IFTCNLMIFVKNTDKLTTLMDKLRKVQG 71 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS---EEEEEEEEEESSHHHHHHHHHHHTTCTT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC---EEEEEEEEEECCHHHHHHHHHHHhcCCC
Confidence 456778889999999999999999999999998876542 34444555554 4678899999987653
No 12
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.54 E-value=0.0086 Score=48.32 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=45.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk~~~ 119 (532)
+..|.+..+|+||.|+++.+.++++|+|+..+...... +.+...+.++..+ ..+.++++.|++.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~---~~~~~~i~v~~~~~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD---EYFTMMAVVSSDEKQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET---TEEEEEEEEEESSCCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc---CEEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677888999999999999999999999999876654 2333333444432 34556666665443
No 13
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=95.95 E-value=0.034 Score=51.77 Aligned_cols=75 Identities=9% Similarity=0.056 Sum_probs=57.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEec
Q psy14226 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 53 TSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
-.|.+.+.|+||.|+++.+.|+++|+|+..+...|+.. ++-...-+.+++++..+..+++.|++...+..+..+.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d-~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~ 78 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDD-PTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELG 78 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSC-SSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCC-CCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 45666788999999999999999999999999998753 2345555666677788889999998876433444443
No 14
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=95.55 E-value=0.05 Score=50.74 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=57.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEec
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLT 128 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVLG 128 (532)
|-.|.+.+.|+||.|+++.+.|+.+|+|+..+-..|+.. ++-..+-+-+++++..+..+.+.|++...+..+..+.
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d-~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~ 79 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTED-PTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS 79 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSS-TTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCC-CCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 445667788999999999999999999999999988763 2334455555677788888999998776433444443
No 15
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=94.99 E-value=0.05 Score=53.33 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCC-CC-CceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEEe
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSK-MA-GIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk-~~-~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
.++|.+...|++|.|+++++.++++++|+..|..+..+ +. .+.-...|+++.. .+.++++.|++...+.+++..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv 79 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEE 79 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEE
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEE
Confidence 56888999999999999999999999999999876543 33 2333334555433 889999999987644445444
No 16
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=94.75 E-value=0.11 Score=49.79 Aligned_cols=67 Identities=3% Similarity=-0.020 Sum_probs=52.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
+-.|.+.+.|+||.|+++...|+.+|+|+..|-.-|+.. ++-..+-+-+++++..+..+.+.|.+..
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted-~gisRitIvV~g~e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESET-PGLSRLVIMVKGDDKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSS-TTEEEEEEEEEECTTHHHHHHHHHTTST
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCC-CCEEEEEEEEECCHHHHHHHHHHhcCcC
Confidence 446777788999999999999999999999998888653 3345555566677777888888887654
No 17
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.88 E-value=0.3 Score=42.65 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=44.4
Q ss_pred EEEE-EEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 53 AALV-LRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 53 TSLI-FsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
++++ +.++++||.|+++++.++++|||+..+.+.+ ........++.+ +..++++.|++..
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~---~~~~~~~~i~~~----d~~~A~~~L~~~g 132 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA---NNNVANVVIRPS----NMDKCIEVLKEKK 132 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE---ETTEEEEEEEES----CHHHHHHHHHHTT
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc---cCCcEEEEEEeC----CHHHHHHHHHHcC
Confidence 4544 4789999999999999999999998776654 223455556664 5667888887653
No 18
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=91.82 E-value=0.6 Score=40.62 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=47.9
Q ss_pred EEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-cHHHHHHHHHHHhhc
Q psy14226 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-RRDLLNLIRSLRQSS 119 (532)
Q Consensus 55 LIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~Lk~~~ 119 (532)
|-+.-.|++|-|.+++++++.+++|+..|+.+|. + . .++.++.. ...+..+...+++..
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~----g-~-i~~~~~~~~~~~~~~L~~~l~~i~ 62 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI----G-R-IYLNFAELEFESFSSLMAEIRRIA 62 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT----T-E-EEEEECCCCHHHHHHHHHHHHHST
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC----C-E-EEEEEEeCCHHHHHHHHHHHHcCC
Confidence 4566789999999999999999999999999886 2 2 67777754 466788888887765
No 19
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=82.62 E-value=1.6 Score=38.03 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=28.9
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeeccc
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRV 87 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRP 87 (532)
.|.+.++|+||.|+++.+.|+++|||+..|---+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 4555789999999999999999999999885433
No 20
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=79.27 E-value=7.2 Score=40.52 Aligned_cols=73 Identities=7% Similarity=-0.020 Sum_probs=50.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhcCCccEEE
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINL 126 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkV 126 (532)
+...|++.=+|+||.+.++-++|.++|||+....... +.+.-...+|++...+.-.+++++|++...+..+++
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r---~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~ 402 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT---SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARL 402 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE---CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC---CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEE
Confidence 4556777778999999999999999999997665443 233445567888763233578888887543234443
No 21
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=79.11 E-value=6.1 Score=37.59 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=37.4
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-HHHHHHHHHHH
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-RDLLNLIRSLR 116 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-~~V~eaLe~Lk 116 (532)
.++++||.++++++.|+++|||+-.|-.-++......-.+-..+...+ +...+++++++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~ 101 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLR 101 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTH
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHH
Confidence 578999999999999999999999996555443332223333333222 33444555544
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=77.14 E-value=8.8 Score=34.93 Aligned_cols=65 Identities=8% Similarity=0.036 Sum_probs=41.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCC---CceEEEEEEEec--C----cHHHHHHHHHHH
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMA---GIQFDVLVKVDM--T----RRDLLNLIRSLR 116 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~---~~eY~FFVD~Eg--~----d~~V~eaLe~Lk 116 (532)
.+.|.+.-+++||.|+++.+.|+.+|+|+..+..--.... ..+=.||+.++. . ...+++.+..+.
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALC 166 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4455667789999999999999999999998876533310 122356665543 1 134555555543
No 23
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=74.89 E-value=10 Score=34.59 Aligned_cols=28 Identities=4% Similarity=0.075 Sum_probs=24.8
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeeeec
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHLET 85 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThIES 85 (532)
.++++||.++++++.++++|||+-.|-.
T Consensus 22 ~~~~~~G~~a~if~~La~~~InId~i~~ 49 (178)
T 2dtj_A 22 GISDKPGEAAKVFRALADAEINIDMVLQ 49 (178)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred cCCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 3578999999999999999999988753
No 24
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=74.70 E-value=10 Score=33.96 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=37.9
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCc--eEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGI--QFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~--eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
.++++||.++++++.++++|||+-.|-.-.+....+ ...|.|+-+ +.+...++|+.++.
T Consensus 23 g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~-d~~~a~~~L~~~~~ 83 (167)
T 2dt9_A 23 GIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD-FAQEALEALEPVLA 83 (167)
T ss_dssp EEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG-GHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH-HHHHHHHHHHHHHH
Confidence 357899999999999999999999986533321223 344555432 12334455665543
No 25
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=74.30 E-value=14 Score=34.04 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=38.8
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeeeecccCC--CCCceEEEEEEEecCcHHHHHHHHHHH
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHLETRVSK--MAGIQFDVLVKVDMTRRDLLNLIRSLR 116 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThIESRPSk--~~~~eY~FFVD~Eg~d~~V~eaLe~Lk 116 (532)
.++++||.++++++.|+++|||+-.|-.-.+. .+.....|.|+-+ +-+...++|++++
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-~~~~a~~~L~~~~ 82 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-VGPAAVEKLDSLR 82 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-THHHHHHHHHHTH
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-HHHHHHHHHHHHH
Confidence 57899999999999999999999999643222 1222466666532 1134455566554
No 26
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=73.32 E-value=13 Score=39.06 Aligned_cols=72 Identities=7% Similarity=0.051 Sum_probs=49.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEE-EEEEEecCcHHHHHHHHHHHhhcCCccEEEe
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFD-VLVKVDMTRRDLLNLIRSLRQSSSLGGINLL 127 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~-FFVD~Eg~d~~V~eaLe~Lk~~~~~~~VkVL 127 (532)
..-|++.=+|.||-|.++-.+|+++|||+...-++.. ++|- -.+|++.-.+.-.++++.|+.......+|++
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~----~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTD----GEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEEC----SSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCC----CceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 4567777788999999999999999999988776542 2333 3568873333446778888766533344443
No 27
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=71.38 E-value=15 Score=33.45 Aligned_cols=35 Identities=0% Similarity=-0.020 Sum_probs=29.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETR 86 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESR 86 (532)
+..|.+..+|+||-++++-+.++.+|+|+..+.--
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~ 40 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIA 40 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeee
Confidence 34566677999999999999999999999876543
No 28
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=67.39 E-value=12 Score=39.88 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=42.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeec-ccCCCCCceEEEEEEEecC-cHHHHHHHHHH
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLET-RVSKMAGIQFDVLVKVDMT-RRDLLNLIRSL 115 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIES-RPSk~~~~eY~FFVD~Eg~-d~~V~eaLe~L 115 (532)
-..|++..+|+||.+.++...+.++|||+..++- |..++ ++-...+.++.. ++.+.+.|+.+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~--~~a~~~i~vd~~~~~~~l~~l~~~ 517 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG--PGATILLRLDQDVPDDVRTAIAAA 517 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS--SCEEEEEEESSCCCHHHHHHHHHH
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC--CEEEEEEEECCCCCHHHHHHHhcC
Confidence 4578888899999999999999999999987753 43332 344555666654 33333333333
No 29
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=67.13 E-value=17 Score=32.60 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=28.0
Q ss_pred EEEEEE-eCCCccHHHHHHHHHHHCCcceeeeecc
Q psy14226 53 AALVLR-MREGMSSLARILKTIEVFKGTVVHLETR 86 (532)
Q Consensus 53 TSLIFs-L~dkpGALaeILkvFa~~gINLThIESR 86 (532)
+.|-+. ++++||.++++++.|+++|||+-.|-+-
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 344333 7899999999999999999999998653
No 30
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=66.03 E-value=8.2 Score=41.62 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=52.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc--HHHHHHHHHHHhhc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR--RDLLNLIRSLRQSS 119 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d--~~V~eaLe~Lk~~~ 119 (532)
+..+.+.++++||+|.++++++. +-|+++++=|. ....+-..+|.+|..+ +.+.++++.|+...
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~g 403 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRF--ADAKNACIFVGVRLSRGLEERKEILQMLNDGG 403 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEEC--CCSSBCEEEEEEECSSTHHHHHHHHHHHTSSS
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeec--cCCCeEEEEEEEEeCCcHHHHHHHHHHHHhCC
Confidence 56788899999999999999887 79999999984 3455667788888754 78999999998754
No 31
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=62.29 E-value=13 Score=39.41 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=44.6
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCC-ceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAG-IQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~-~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
-+-|.+.|+||.|+++-.+|.++||++..+--++..... ..-..++.=...+.+++++++.|+...
T Consensus 361 y~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~ 427 (444)
T 3mtj_A 361 YLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALD 427 (444)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTST
T ss_pred EEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCC
Confidence 455667899999999999999999999887666643211 122233333345688999999998653
No 32
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=61.81 E-value=6.8 Score=34.92 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=39.0
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+++.+|.++++++.|+++|||+-.|-+-+ ....|.|+-+ + .+.+++++|+.
T Consensus 28 m~~~~g~~~~if~~La~~~I~vd~I~~s~-----~~Isf~v~~~--~-~~~~il~~l~~ 78 (157)
T 3mah_A 28 KLLSWHFMRKLFEIFEFYQEPVDMVATSE-----VGVSLTIDND--K-NLPDIVRALSD 78 (157)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSCEECCS-----SEEEEEESCC--T-THHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHcCCCEEEEEecC-----CEEEEEECCh--H-HHHHHHHHHhc
Confidence 35679999999999999999999997633 2567777621 2 57788888864
No 33
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=61.14 E-value=15 Score=33.04 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=37.1
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+++.||.++++++.|+++|||+..|-+ ....-.|.|+- +...++++.|++
T Consensus 113 m~~~~Gv~a~i~~aL~~~~InI~~ist-----se~~is~vv~~----~d~~~av~~Lh~ 162 (167)
T 2re1_A 113 MRSHVGVAAKIFRTLAEEGINIQMIST-----SEIKVSVLIDE----KYMELATRVLHK 162 (167)
T ss_dssp CTTCCCHHHHHHHHHHHTTCCCCEEEE-----CSSEEEEEEEG----GGHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHCCCcEEEEEc-----ccCEEEEEEeH----HHHHHHHHHHHH
Confidence 456899999999999999999999853 23346667654 345567777764
No 34
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=58.39 E-value=9 Score=35.37 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=37.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCC--CCCceEEEEEEEec
Q psy14226 51 QTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSK--MAGIQFDVLVKVDM 103 (532)
Q Consensus 51 dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk--~~~~eY~FFVD~Eg 103 (532)
.++.|.+.-+++||-++++-+.|+++|+|+..+...-.. ... +=.||+.++.
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~-~~~F~m~~~~ 145 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAG-FTLFRMGSRV 145 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTT-CEEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCC-CCeEEEEEEE
Confidence 345555666899999999999999999999988765332 112 2356665543
No 35
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=55.21 E-value=45 Score=33.55 Aligned_cols=69 Identities=9% Similarity=0.131 Sum_probs=46.7
Q ss_pred ccCCeEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-----cHHHHHHHHHHHh
Q psy14226 48 SAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-----RRDLLNLIRSLRQ 117 (532)
Q Consensus 48 sg~dKTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-----d~~V~eaLe~Lk~ 117 (532)
.|..+..|.++-+|+||-.+++-+.++++|+|+..+...-.. ..+.|..-+.++.. .+.+.+.++.+.+
T Consensus 18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~-~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDN-LSGWFFMRHEIRADTLPFDLDGFREAFTPIAE 91 (302)
T ss_dssp CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEET-TTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHH
T ss_pred cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecC-CCCeEEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 344566777777999999999999999999999999887432 22333333444432 2456666665543
No 36
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=54.71 E-value=29 Score=34.63 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=44.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-------cHHHHHHHHHHHh
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-------RRDLLNLIRSLRQ 117 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-------d~~V~eaLe~Lk~ 117 (532)
+..|.++-+|+||-.+++-+.++++|+|+..+...-.. ..+.|.+-+.++.. .+.+.+.++.+..
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~-~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDD-LSARFFVRCVFHATDDADALRVDALRREFEPIAE 81 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEET-TTTEEEEEEEEEECC----CCHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecC-CCCceEEEEEEEccCcccCCCHHHHHHHHHHHHH
Confidence 45666777999999999999999999999999887322 22333333444333 2456666665543
No 37
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=53.65 E-value=48 Score=32.98 Aligned_cols=65 Identities=8% Similarity=-0.012 Sum_probs=45.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC----cHHHHHHHHHHHh
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT----RRDLLNLIRSLRQ 117 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~----d~~V~eaLe~Lk~ 117 (532)
+..|.++-+|+||-.+++-+.++++|+|+..+.+.-.. ..+.|..-+.++.. .+.+++.++.+.+
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~-~~g~Ffmr~~~~~~~~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDR-QSGRFFIRVEFRQPDDFDEAGFRAGLAERSE 76 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET-TTTEEEEEEEEECCSSCCHHHHHHHHHHHHG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccC-CCCeeEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 45666777999999999999999999999999887322 22333333444432 2566666766654
No 38
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=53.29 E-value=34 Score=34.09 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=44.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC---cHHHHHHHHHHHh
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT---RRDLLNLIRSLRQ 117 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~---d~~V~eaLe~Lk~ 117 (532)
+..|.+.-+|+||-.+++-+.++++|+|+..+...... ..+.|..-+.++.. .+.+.+.++.+..
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~-~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDE-DSSKFFMRVSVEIPVAGVNDFNSAFGKVVE 74 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET-TTTEEEEEEEEECCC---CHHHHHHHHHHG
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecC-CCCeEEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45666777999999999999999999999999886322 22233333444442 2466666766654
No 39
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=49.98 E-value=89 Score=32.18 Aligned_cols=57 Identities=5% Similarity=0.080 Sum_probs=37.8
Q ss_pred eCCCccHHHHHHHHHHHCCcceeeeecccCC---CCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 59 MREGMSSLARILKTIEVFKGTVVHLETRVSK---MAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 59 L~dkpGALaeILkvFa~~gINLThIESRPSk---~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
+++++|.++++++.|+++|||+-.|-- ++. .......|.|+-+ +.....+++++++.
T Consensus 272 ~~~~~g~~~~If~~La~~~I~vd~I~q-~~s~~~~g~~~isf~v~~~-~~~~a~~~l~~~~~ 331 (421)
T 3ab4_A 272 ISDKPGEAAKVFRALADAEINIDMVLQ-NVFSVEDGTTDITFTCPRS-DGRRAMEILKKLQV 331 (421)
T ss_dssp EESSTTHHHHHHHHHHHTTCCCEEEEE-CCCC--CCEEEEEEEEETT-THHHHHHHHHHHHT
T ss_pred cCCcccHHHHHHHHHHHcCCcEEEEEc-cCccccCCcceEEEEEech-hHHHHHHHHHHHHH
Confidence 678999999999999999999999942 211 1112455666532 22345566776654
No 40
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=49.12 E-value=41 Score=33.48 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=44.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecC-----cHHHHHHHHHHHh
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMT-----RRDLLNLIRSLRQ 117 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~-----d~~V~eaLe~Lk~ 117 (532)
+..|.++-+|+||-.+++-+.++++|+|+..+...... ..+.|..-+.++.. .+.+.+.++.+.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~-~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDT-ESGHFFMRVVFNAAAKVIPLASLRTGFGVIAA 75 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEET-TTTEEEEEEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecC-CCCceEEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 44566677999999999999999999999999886332 22333333444332 2566666766654
No 41
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=45.85 E-value=24 Score=32.09 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=41.0
Q ss_pred eEEEEE-EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 52 TAALVL-RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 52 KTSLIF-sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
+.|++= .+++.||.++++++.+++.|||+..|-+. .-.-.|.|+ .++..++++.|.+.
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS-----e~~Is~vV~----~~d~~~Av~~Lh~~ 155 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS-----EIRISVLIR----EDDLDAAARALHEQ 155 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE-----TTEEEEEEE----GGGHHHHHHHHHHH
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC-----CCeEEEEEe----HHHHHHHHHHHHHH
Confidence 344443 35788999999999999999999998522 134556663 34567778877653
No 42
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=42.60 E-value=25 Score=31.40 Aligned_cols=58 Identities=10% Similarity=0.205 Sum_probs=40.9
Q ss_pred eEEEEE-EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 52 TAALVL-RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 52 KTSLIF-sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
++|++= .+++.||.++++++.+++.|||+..|-+. .-.-.|.|+- +...++++.|.+.
T Consensus 97 ~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S-----e~~is~vv~~----~d~~~Av~~Lh~~ 155 (167)
T 2dt9_A 97 KVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATS-----EVRISVIIPA----EYAEAALRAVHQA 155 (167)
T ss_dssp EEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEEC-----SSEEEEEEEG----GGHHHHHHHHHHH
T ss_pred EEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEcc-----CCEEEEEEeH----HHHHHHHHHHHHH
Confidence 455553 35678999999999999999999878422 1245566544 4566788887654
No 43
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=38.52 E-value=59 Score=35.43 Aligned_cols=59 Identities=7% Similarity=0.056 Sum_probs=40.4
Q ss_pred EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHh
Q psy14226 58 RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQ 117 (532)
Q Consensus 58 sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~ 117 (532)
.+++.+|.++++++.|++++||+-+|-.-++........|.|+-+ +-....+++++++.
T Consensus 277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~-~~~~a~~~l~~~~~ 335 (600)
T 3l76_A 277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKD-LLNTAEAVTSAIAP 335 (600)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGG-GHHHHHHHHHHHGG
T ss_pred CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHH-HHHHHHHHHHHHHH
Confidence 457899999999999999999999996555444444555665433 12344556666543
No 44
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=36.73 E-value=47 Score=35.02 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=39.7
Q ss_pred CCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 60 REGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 60 ~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
.+.+|.++++++.|+++|||+-+|.+- .....|.|+-+.-+....+++++|+...
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~-----~~~is~~V~~~d~~~~~~~~~~el~~~~ 363 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSG-----VDSVSLVIEDCKLDGKCDKIIEEIKKQC 363 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEE-----TTEEEEEEEHHHHTTTHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecC-----CCEEEEEEecchHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999642 2356666654321224667888887654
No 45
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=31.53 E-value=1.1e+02 Score=33.31 Aligned_cols=39 Identities=8% Similarity=0.067 Sum_probs=30.3
Q ss_pred CeEEEEE-EeCCCccHHHHHHHHHHHCCcceeeeecccCC
Q psy14226 51 QTAALVL-RMREGMSSLARILKTIEVFKGTVVHLETRVSK 89 (532)
Q Consensus 51 dKTSLIF-sL~dkpGALaeILkvFa~~gINLThIESRPSk 89 (532)
+-+.|.+ .++++||..+++++.++++|||+-.|-.-++.
T Consensus 443 ~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~ 482 (600)
T 3l76_A 443 DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRC 482 (600)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccc
Confidence 3444443 57899999999999999999999888554443
No 46
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=31.29 E-value=75 Score=29.13 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=42.5
Q ss_pred CCeEEEE-EEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 50 IQTAALV-LRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 50 ~dKTSLI-FsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
-.+.|++ -.+++.||-++++++.+++.|||+..|-+ | .-.-.|.|+- ....++++.|.+.
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Ist--S---ei~Is~vV~~----~d~~~Av~aLH~~ 156 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--S---EIRISVLCRD----TELDKAVVALHEA 156 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE--E---TTEEEEEEEG----GGHHHHHHHHHHH
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEc--C---CCEEEEEEeH----HHHHHHHHHHHHH
Confidence 3366665 34678999999999999999999988872 2 2234555543 4566778887654
No 47
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=30.52 E-value=1.9e+02 Score=24.67 Aligned_cols=57 Identities=12% Similarity=0.003 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHHCCcceeeeecc-------cCCCCCceEEEEEEEec-CcHHHHHHHHHHHhhc
Q psy14226 63 MSSLARILKTIEVFKGTVVHLETR-------VSKMAGIQFDVLVKVDM-TRRDLLNLIRSLRQSS 119 (532)
Q Consensus 63 pGALaeILkvFa~~gINLThIESR-------PSk~~~~eY~FFVD~Eg-~d~~V~eaLe~Lk~~~ 119 (532)
...+.++-+.+.++|-.+.+++.. |++.....|+|++++++ +.+.+.++-..|+..-
T Consensus 26 ~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~eler~lr~~e 90 (110)
T 2j5a_A 26 KKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLKIDE 90 (110)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHHHHhCCCc
Confidence 345677788889999999988854 56666677999999999 7777777777776554
No 48
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=29.57 E-value=56 Score=29.96 Aligned_cols=35 Identities=3% Similarity=-0.012 Sum_probs=28.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCcceeeeecc
Q psy14226 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETR 86 (532)
Q Consensus 52 KTSLIFsL~dkpGALaeILkvFa~~gINLThIESR 86 (532)
+.-|.+.-+|+||-.+++-+.+..+|+|+..+.--
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~ 39 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMA 39 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeE
Confidence 34455667999999999999999999999866544
No 49
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=28.30 E-value=1.5e+02 Score=27.11 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCccHHHHHHHHHHHC-Ccceeee----ecccCCCCC-ceEE-EEEEEec--CcHHHHHHHHHHHhhcCCccEEEecccC
Q psy14226 61 EGMSSLARILKTIEVF-KGTVVHL----ETRVSKMAG-IQFD-VLVKVDM--TRRDLLNLIRSLRQSSSLGGINLLTENN 131 (532)
Q Consensus 61 dkpGALaeILkvFa~~-gINLThI----ESRPSk~~~-~eY~-FFVD~Eg--~d~~V~eaLe~Lk~~~~~~~VkVLGs~n 131 (532)
++...|..+++.+++. ++.+.++ ||.|..... ..|. --|.++. +...+.+.++.+++.. |+..
T Consensus 13 d~~~~l~~A~~~L~~~~~~~v~~~S~~YeT~p~g~~~qp~FlN~vv~~~T~l~p~~LL~~l~~IE~~~--------GR~r 84 (158)
T 3ip0_A 13 SPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ--------GRVR 84 (158)
T ss_dssp CHHHHHHHHHHHHHTSTTEEEEEECCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHT--------TCCC
T ss_pred hHHHHHHHHHHHHHcCCCCcEEEEeeEEEeCCCCCCcccchheeeeeeccCCCHHHHHHHHHHHHHHh--------CCCc
Confidence 4556789999999874 6665433 677765322 2232 2233333 3455666666665543 4432
Q ss_pred ccCCCCCCCCccchhhhh--hhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC
Q psy14226 132 ISVKGPWFPTHASDLDNC--NHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN 187 (532)
Q Consensus 132 ~~e~vPWFPRkIsDLD~c--a~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~ 187 (532)
. .-.|-||.| |||-. .+.+.. .++|.--||....-.|.-.- +++||-++.
T Consensus 85 ~--~~~~gpRti-DlDIl~y~~~~~~-~~~L~lPHP~~~~R~FVL~P--L~eI~P~~~ 136 (158)
T 3ip0_A 85 K--AERWGPRTL-DLDIMLFGNEVIN-TERLTVPHYDMKNRGFMLWP--LFEIAPELV 136 (158)
T ss_dssp C--SSTTCCCSC-EEEEEEETTCCEE-CSSCEESCTTGGGCHHHHHH--HHHHCTTCB
T ss_pred C--cccCCCccH-hhhhhccCCEEEe-cCccCcCCCChhhCchHHHH--HHHHCCCCC
Confidence 1 135889886 77753 344433 33677789877555544433 567776665
No 50
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=28.22 E-value=1.6e+02 Score=24.67 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHCCcceeeeecc-------cCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 64 SSLARILKTIEVFKGTVVHLETR-------VSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 64 GALaeILkvFa~~gINLThIESR-------PSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
..+.++-+.+.++|-.+.++|.. |++.....|+|+++++++.+.+.++-..|+..-
T Consensus 21 ~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~~~ 83 (101)
T 1cqm_A 21 LEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRD 83 (101)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHHHhcCCc
Confidence 44566778888999999988865 555555678999999998777778777777554
No 51
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=27.99 E-value=1.4e+02 Score=29.95 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=40.2
Q ss_pred EEEEEeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCc-----HHHHHHHHHHH
Q psy14226 54 ALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTR-----RDLLNLIRSLR 116 (532)
Q Consensus 54 SLIFsL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d-----~~V~eaLe~Lk 116 (532)
.|.++=+|+||-.+.+-+.++++|+|+..++..... +.+..-+-++... +.+.+.+..+.
T Consensus 14 ~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~---~~f~~~~~~~~~~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 14 LITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIR---HRLTLGVLVCCPADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEET---TEEEEEEEEEECHHHHTSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEEC---CEeEEEEEEEecCCcCCHHHHHHHHHHHH
Confidence 344445899999999999999999999999886532 2232223334332 45666666654
No 52
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=25.89 E-value=1.7e+02 Score=25.70 Aligned_cols=51 Identities=2% Similarity=0.083 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCceeeecCCcceE--EEecC----------hHHHHHHHHHHHHH
Q psy14226 462 ESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRV--EVLDC----------VDKLENLMSQLNLE 512 (532)
Q Consensus 462 ~sfe~~~~~~~~~~~~~~rp~~~~~~~~t~~~--~~~~~----------~~~~~~~~~~~~~~ 512 (532)
+.++++.+++.++.+.+.+...+.+|.-|.++ .|+|. ++.+.+++..|+.-
T Consensus 38 eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e~ 100 (117)
T 2hc5_A 38 TNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTEF 100 (117)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHHHHHHHHHh
Confidence 56889999999999999999999999998875 56776 56777777777643
No 53
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=24.64 E-value=1e+02 Score=29.06 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=42.3
Q ss_pred CeEEEEE-EeCCCccHHHHHHHHHHHCCcceeeeecccCCCCCceEEEEEEEecCcHHHHHHHHHHHhh
Q psy14226 51 QTAALVL-RMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQS 118 (532)
Q Consensus 51 dKTSLIF-sL~dkpGALaeILkvFa~~gINLThIESRPSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~ 118 (532)
.|.|++= -++..||-.+++.+.+++.|||+..|-+ ..-.-.|.| ++....+|++.|.+.
T Consensus 116 akVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIst-----SEi~IS~vV----~~~d~~~Av~aLH~~ 175 (200)
T 4go7_X 116 GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST-----SEIRISVLC----RDTELDKAVVALHEA 175 (200)
T ss_dssp EEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEE-----CSSEEEEEE----EGGGHHHHHHHHHHH
T ss_pred eeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEc-----cCCEEEEEE----eHHHHHHHHHHHHHH
Confidence 3556653 3688999999999999999999999953 122334444 355677888888653
No 54
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=22.72 E-value=97 Score=34.41 Aligned_cols=105 Identities=28% Similarity=0.366 Sum_probs=59.3
Q ss_pred ecCccchhhhhhhccCchhHHHH-HHHh------------hhhhHHHHHHHHHHHHHHHhhcccccccccCCCCC-hHHH
Q psy14226 261 PAAGLLTARDFLANQGLTEEEVI-LEKA------------ASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLT-ARDF 326 (532)
Q Consensus 261 pv~~~~~~~~f~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~tgf~~~p~~Gll~-~~~F 326 (532)
+|.|+.-.. =|++-|.|++||- |++. +.+...|..|+++...=.++.-.| ... .|.|
T Consensus 332 ~~~g~~htd-elp~ygi~~~ev~~l~~~~~~~~~da~~~v~~~~~~~~~a~~~v~~R~k~a~~~--------v~~ETR~~ 402 (619)
T 2d6f_C 332 GVSGIFHTD-ELPAYGITEEEVRGLRDAVGASQGDAVVMVAHERVTAENALREVIRRAEMAIQG--------VPEETRKA 402 (619)
T ss_dssp SCSCCEETT-TTTCSSCCHHHHHHHHHHTTCCSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHC--------CCCEEEEE
T ss_pred ccCcccccc-cccccCccHHHHHHHHHHhcCCcccceEEeccchhhhhhhhhhHHHHHHhhhcc--------cchhhhcc
Confidence 566655332 3889999998885 3431 112223666666654433322111 110 1111
Q ss_pred HHHhhcccccccccccC-CCCCCCCCCchh---------hHhhhCCCCCCCChhHHHHHHHHhh
Q psy14226 327 LASLAFRVFQSTQYVRH-TKTPFHTVEPDC---------IHELLGHMPLLADPSFAQFSQEIGL 380 (532)
Q Consensus 327 l~~la~r~F~~tqyiR~-~~~~~ytpePD~---------~He~~GH~P~l~~p~fA~f~q~~G~ 380 (532)
.. - ..|.|||. +..--|-||||+ +-++-.-+|-|-+-..+.|..++|+
T Consensus 403 ~~-----~-g~T~~mR~ke~a~RyfPepDlppi~i~~~~ie~i~~~lPElp~~k~~r~~~~ygl 460 (619)
T 2d6f_C 403 LP-----D-GNTQYLRPLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMRDYGL 460 (619)
T ss_dssp CS-----S-SCEEEEEECCCCCCEEECTTSCCEECCHHHHHHHHTTCCCCHHHHHHHHHHTTCC
T ss_pred CC-----C-CCEEeCCCCCCccCcccCCCcCcEecCHHHHHHHHhcCCCCHHHHHHHHHHHcCC
Confidence 10 1 35888884 333477888886 4456667888888888888877763
No 55
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=22.31 E-value=1.9e+02 Score=26.58 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCccHHHHHHHHHHHC-Ccceee----eecccCCCC-CceEE-EEEEEec--CcHHHHHHHHHHHhhcCCccEEEecccC
Q psy14226 61 EGMSSLARILKTIEVF-KGTVVH----LETRVSKMA-GIQFD-VLVKVDM--TRRDLLNLIRSLRQSSSLGGINLLTENN 131 (532)
Q Consensus 61 dkpGALaeILkvFa~~-gINLTh----IESRPSk~~-~~eY~-FFVD~Eg--~d~~V~eaLe~Lk~~~~~~~VkVLGs~n 131 (532)
+....|..+++.++.. ++.+.+ .||.|.... ...|. --+.++. +...+.+.++.+++.. |+..
T Consensus 14 d~~~~l~~A~~~L~~~~~~~~~~~S~~y~T~P~g~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~--------GR~r 85 (159)
T 2qx0_A 14 MPLQQVSAAREALAHLPRSRLVACSPLYRTKPLGPQDQPDFLNAVVALDTSLPPEQLLDHTQAIERNQ--------GRVR 85 (159)
T ss_dssp SCHHHHHHHHHHHHTCTTEEEEEECCCEEECCCSSSCCCCEEEEEEEEEECSCHHHHHHHHHHHHHHH--------HHTT
T ss_pred hHHHHHHHHHHHHhcCCCCceEEecCcEEeCCCCCCCCcccceEEEEEeeCCCHHHHHHHHHHHHHHc--------CCCC
Confidence 4567899999999886 556543 377776532 22332 1133333 3456666666666543 4422
Q ss_pred ccCCCCCCCCccchhhhh--hhhhhccCCCCCCCCCCCCChHHHHHHHHHHHHhhhcC
Q psy14226 132 ISVKGPWFPTHASDLDNC--NHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN 187 (532)
Q Consensus 132 ~~e~vPWFPRkIsDLD~c--a~~vL~yg~eld~dHPGFsD~~YreRRawIA~Ia~~~~ 187 (532)
. ...|-||.| |||-. .+.++. .++|.--||....-.|.-. =+++||-++.
T Consensus 86 ~--~~r~gpRtl-DlDIL~y~~~~~~-~~~L~lPHp~~~eR~FVL~--PL~ei~p~~~ 137 (159)
T 2qx0_A 86 K--EQRWGPRTL-DLDIMLYGDQVIK-TDRLTIPHYGLKAREFMLY--PLADIAPDLI 137 (159)
T ss_dssp T--CBTTSCCSC-EEEEEEETTCCEE-SSSCEESCTTGGGCHHHHH--HHHHHCTTCB
T ss_pred C--CCCCCCcee-EEeeeccCCeEeC-CCCcccCCcChhhChHHHH--HHHHhCcCCC
Confidence 1 257999885 78853 233332 2356667988766555542 3567775554
No 56
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=21.26 E-value=1e+02 Score=25.83 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHCCcceeeeecc-------cCCCCCceEEEEEEEecCcHHHHHHHHHHHhhc
Q psy14226 64 SSLARILKTIEVFKGTVVHLETR-------VSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS 119 (532)
Q Consensus 64 GALaeILkvFa~~gINLThIESR-------PSk~~~~eY~FFVD~Eg~d~~V~eaLe~Lk~~~ 119 (532)
..+.++-+.+.++|-.+.+++.. |++.....|+|+++++++.+.+.++-..|+..-
T Consensus 20 ~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~~~ 82 (100)
T 3r8n_F 20 GMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFND 82 (100)
T ss_dssp HHHHHHHHHHHTTTCBCCCCEEEEEECCSSCTTSCSCEEEEECCEEECTTTTHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCEEEEEEeeecccCCeEcCCCCEEEEEEEEEEeChHHHHHHHHHhcCCC
Confidence 35667778888999988888854 566666678999999998777777777776543
Done!