RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14226
(532 letters)
>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
This model describes tyrosine 3-monooxygenase, a member
of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tryptophan
5-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria.
Length = 457
Score = 637 bits (1645), Expect = 0.0
Identities = 257/503 (51%), Positives = 315/503 (62%), Gaps = 62/503 (12%)
Query: 26 DQGLTEEEVILEKAASESKEAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLET 85
D G +I + +++E+A+Q +R +E +SSL RILK IE FK +VH ET
Sbjct: 13 DYGRIHSIIINFHPITHEQDSEAAMQNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFET 71
Query: 86 R---VSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLTENNISVKGPWFPTH 142
R A + + L+ ++ ++ LI SLR +S + GINLL N VK WFP H
Sbjct: 72 RPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFISGINLLNNQN--VKEDWFPKH 129
Query: 143 ASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDYTDSEY 201
S+LD C HL+TK++PDLD +HPGF D+VYRQRR+ IAEIAF+Y GDPIP ++YT E
Sbjct: 130 ISELDKCQHLLTKFQPDLDTDHPGFHDKVYRQRREAIAEIAFQYKYGDPIPEVEYTKEEI 189
Query: 202 ATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRP 261
TW+ VF T+ DL H C+EY D F +L+ + E IPQL+ +S
Sbjct: 190 ETWRLVFTTMKDLHASHACREYIDAFQLLEKYCNYNSESIPQLQTIS------------- 236
Query: 262 AAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLL 321
+FL + TGF LRP AGLL
Sbjct: 237 --------EFLH----------------------------------RTTGFRLRPVAGLL 254
Query: 322 TARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLA 381
+ARDFLASLAFRVFQ TQY+RH +P HT EPDCIHELLGHMP+LAD FAQFSQEIGLA
Sbjct: 255 SARDFLASLAFRVFQCTQYIRHHSSPMHTPEPDCIHELLGHMPMLADRQFAQFSQEIGLA 314
Query: 382 SLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDP 441
SLGAS+EEIEKLST+YWFTVEFGLCKENGE KAYGAGLLSSYGEL HA SD E R F+P
Sbjct: 315 SLGASEEEIEKLSTLYWFTVEFGLCKENGETKAYGAGLLSSYGELEHAFSDLSEKRPFNP 374
Query: 442 ISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDK 501
AVQPYQDQ YQ IYFV ESFEDAK K R +++T RP+ VRF+P T+ VEVLD K
Sbjct: 375 NDAAVQPYQDQGYQKIYFVTESFEDAKRKLRNYINTSGRPFIVRFDPITETVEVLDRFSK 434
Query: 502 LENLMSQLNLEMLHLNTAVNKLR 524
+ L+ + E+ L TA+N L
Sbjct: 435 RKELLKHVKEEIGQLTTALNHLN 457
Score = 33.4 bits (76), Expect = 0.30
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 273 ANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQ 308
+ G +I + +++E+A+Q +R +
Sbjct: 12 KDYGRIHSIIINFHPITHEQDSEAAMQNNQFYIRTK 47
>gnl|CDD|239461 cd03345, eu_TyrOH, Eukaryotic tyrosine hydroxylase (TyrOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tryptophan hydroxylase (TrpOH). TyrOH catalyzes the
conversion of tyrosine to L-dihydroxyphenylalanine
(L-DOPA), the rate-limiting step in the biosynthesis of
the catecholamines dopamine, noradrenaline, and
adrenaline.
Length = 298
Score = 535 bits (1380), Expect = 0.0
Identities = 213/353 (60%), Positives = 255/353 (72%), Gaps = 56/353 (15%)
Query: 138 WFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHIDY 196
WFP H S+LD C+HL+TKYEPDLD++HPGF+D+VYR+RRK IAEIAF+Y GDPIP ++Y
Sbjct: 1 WFPRHISELDKCHHLVTKYEPDLDLDHPGFSDKVYRERRKLIAEIAFQYKHGDPIPRVEY 60
Query: 197 TDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTG 256
T E ATWK V+ T+ DL H C+EY D F +L+ E ++ +RIPQLE++S
Sbjct: 61 TAEEIATWKEVYKTLKDLHATHACKEYLDAFQLLEKECGYSEDRIPQLEDVS-------- 112
Query: 257 FTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRP 316
+FL + TGF LRP
Sbjct: 113 -------------EFLKER----------------------------------TGFQLRP 125
Query: 317 AAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFSQ 376
AGLL+ARDFLASLAFRVFQ TQY+RH +P H+ EPDC HELLGH+P+LADP+FAQFSQ
Sbjct: 126 VAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADPTFAQFSQ 185
Query: 377 EIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEH 436
+IGLASLGASDEEIEKLST+YWFTVEFGLCKENGE+KAYGAGLLSSYGELLHA+SD+PEH
Sbjct: 186 DIGLASLGASDEEIEKLSTLYWFTVEFGLCKENGELKAYGAGLLSSYGELLHALSDEPEH 245
Query: 437 RVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPY 489
R FDP +TAVQPYQDQ YQPIYFV+ESF DAK+K R + STM RP+ VR++PY
Sbjct: 246 RPFDPAATAVQPYQDQTYQPIYFVSESFSDAKDKLRNYASTMKRPFSVRYDPY 298
>gnl|CDD|201173 pfam00351, Biopterin_H, Biopterin-dependent aromatic amino acid
hydroxylase. This family includes
phenylalanine-4-hydroxylase, the phenylketonuria disease
protein.
Length = 306
Score = 515 bits (1327), Expect = 0.0
Identities = 209/361 (57%), Positives = 249/361 (68%), Gaps = 56/361 (15%)
Query: 137 PWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY-NGDPIPHID 195
PWFP S+LD C +L+ KY P+LD +HPGF D VYRQRRK A+IAF Y +GDPIPH++
Sbjct: 1 PWFPRKISELDRCANLVLKYGPELDADHPGFKDPVYRQRRKYFADIAFNYKHGDPIPHVE 60
Query: 196 YTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHT 255
YT+ E TW VF T+ L P H C+EY F +L+ F + IPQLE++SNFLK+ T
Sbjct: 61 YTEEEIKTWGTVFKTLKKLYPTHACREYLHAFPLLEKYCGFREDNIPQLEDVSNFLKERT 120
Query: 256 GFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLR 315
GF+LRP AGLL+ARDFL A L R+ H
Sbjct: 121 GFSLRPVAGLLSARDFL----------------------------AGLAFRVFH------ 146
Query: 316 PAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375
TQY+RH +P +T EPDC HELLGH+PLLADPSFAQFS
Sbjct: 147 ---------------------CTQYIRHASSPMYTPEPDCCHELLGHVPLLADPSFAQFS 185
Query: 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPE 435
QEIGLASLGASDEEIEKLST+YWFTVEFGLCK+NG++KAYGAGLLSSYGELLHA+SDKPE
Sbjct: 186 QEIGLASLGASDEEIEKLSTIYWFTVEFGLCKQNGQIKAYGAGLLSSYGELLHALSDKPE 245
Query: 436 HRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEV 495
R F+P +TAVQPYQD E+QP+Y+VAESFEDAKEK R + ST+ RP+ VR+NPYTQR+EV
Sbjct: 246 LRAFEPEATAVQPYQDTEFQPVYYVAESFEDAKEKLRNFASTIPRPFSVRYNPYTQRIEV 305
Query: 496 L 496
L
Sbjct: 306 L 306
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric
form. This model describes the larger, tetrameric form
of phenylalanine-4-hydroxylase, as found in metazoans.
The enzyme irreversibly converts phenylalanine to
tryosine and is known to be the rate-limiting step in
phenylalanine catabolism in some systems. It is closely
related to metazoan tyrosine 3-monooxygenase and
tryptophan 5-monoxygenase, and more distantly to
monomeric phenylalanine-4-hydroxylases of some
Gram-negative bacteria. The member of this family from
Drosophila has been described as having both
phenylalanine-4-hydroxylase and tryptophan
5-monoxygenase activity (PMID:1371286). However, a
Drosophila member of the tryptophan 5-monoxygenase clade
has subsequently been discovered.
Length = 436
Score = 453 bits (1166), Expect = e-156
Identities = 216/482 (44%), Positives = 285/482 (59%), Gaps = 64/482 (13%)
Query: 49 AIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDM-TRRD 107
I +L+ ++E +LA LK + + H+E+R SK +++ V+ D + R
Sbjct: 13 NIAKTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRK 72
Query: 108 LLNLIRSLRQSSSLGGINLLT----ENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMN 163
L +I LRQ + + +N+L+ +N SV PWFP +D+D + + Y +LD +
Sbjct: 73 LEGVIEHLRQKAEVT-VNILSRDNKQNKDSV--PWFPRKINDIDRFANQILSYGAELDAD 129
Query: 164 HPGFADQVYRQRRKDIAEIAFKY-NGDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQE 222
HPGF D VYR RRK A+IAF Y +G PIP ++YTD E ATW+ VFN + L P H CQE
Sbjct: 130 HPGFKDPVYRARRKQFADIAFNYKHGQPIPRVEYTDEEIATWRTVFNNLTVLYPTHACQE 189
Query: 223 YKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEV 282
Y +F +LQ F + IPQLE++S FL+ TGFTLRP AGLL++RDFL
Sbjct: 190 YNHIFPLLQQNCGFREDNIPQLEDVSQFLQDCTGFTLRPVAGLLSSRDFL---------- 239
Query: 283 ILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVR 342
A L R+ H STQY+R
Sbjct: 240 ------------------AGLAFRVFH---------------------------STQYIR 254
Query: 343 HTKTPFHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVE 402
H P +T EPD HELLGH+PL AD FAQFSQEIGLASLGA D+ IEKL+T+YWFT+E
Sbjct: 255 HHSKPMYTPEPDICHELLGHVPLFADVEFAQFSQEIGLASLGAPDDYIEKLATLYWFTIE 314
Query: 403 FGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQEYQPIYFVAE 462
FGLCK++GE KAYGAGLLSS+GEL + +SDKPE FDP T V Y E+QP+YF+AE
Sbjct: 315 FGLCKQDGEKKAYGAGLLSSFGELQYCLSDKPEVVDFDPEVTCVTKYPITEFQPLYFLAE 374
Query: 463 SFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNLEMLHLNTAVNK 522
SFEDAKEK + + +T+ RP+ VR+N YTQRVE+LD +L+ L + E+ L A+ K
Sbjct: 375 SFEDAKEKLKSFAATIPRPFSVRYNAYTQRVEILDKKAQLQRLADDIRSEISILQEALGK 434
Query: 523 LR 524
L
Sbjct: 435 LN 436
>gnl|CDD|239463 cd03347, eu_PheOH, Eukaryotic phenylalanine-4-hydroxylase
(eu_PheOH); a member of the biopterin-dependent aromatic
amino acid hydroxylase family of non-heme,
iron(II)-dependent enzymes that also includes
prokaryotic phenylalanine-4-hydroxylase (pro_PheOH),
eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic
tryptophan hydroxylase (TrpOH). PheOH catalyzes the
first and rate-limiting step in the metabolism of the
amino acid L-phenylalanine (L-Phe), the hydroxylation of
L-Phe to L-tyrosine (L-Tyr). It uses
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the
physiological electron donor. The catalytic activity of
the tetrameric enzyme is tightly regulated by the
binding of L-Phe and BH4 as well as by phosphorylation.
Mutations in the human enzyme are linked to a severe
variant of phenylketonuria.
Length = 306
Score = 439 bits (1132), Expect = e-153
Identities = 185/361 (51%), Positives = 226/361 (62%), Gaps = 56/361 (15%)
Query: 137 PWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY-NGDPIPHID 195
PWFP DLD + + Y +LD +HPGF D VYR RRK+ A+IA+ Y +G PIP ++
Sbjct: 1 PWFPRTIQDLDRFANQILSYGAELDADHPGFKDPVYRARRKEFADIAYNYKHGQPIPRVE 60
Query: 196 YTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHT 255
YT+ E TW VF + L P H C EY VF +L+ F+ + IPQLE++SNFL+ T
Sbjct: 61 YTEEEKKTWGTVFRELKSLYPTHACYEYNHVFPLLEKNCGFSEDNIPQLEDVSNFLQTCT 120
Query: 256 GFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLR 315
GF LRP AGLL++RDFL A L R+ H
Sbjct: 121 GFRLRPVAGLLSSRDFL----------------------------AGLAFRVFH------ 146
Query: 316 PAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375
STQY+RH P +T EPD HELLGH+PL ADPSFAQFS
Sbjct: 147 ---------------------STQYIRHPSKPMYTPEPDICHELLGHVPLFADPSFAQFS 185
Query: 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPE 435
QEIGLASLGA DE IEKL+TVYWFTVEFGLCK+ G +KAYGAGLLSS+GEL + +SDKPE
Sbjct: 186 QEIGLASLGAPDEYIEKLATVYWFTVEFGLCKQGGSIKAYGAGLLSSFGELQYCLSDKPE 245
Query: 436 HRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEV 495
F+P TAV Y E+QP+Y+VAESFEDAKEK R + +T+ RP+ VR+NPYTQR+EV
Sbjct: 246 LLPFEPEKTAVTKYPITEFQPLYYVAESFEDAKEKLRNFAATIPRPFSVRYNPYTQRIEV 305
Query: 496 L 496
L
Sbjct: 306 L 306
>gnl|CDD|130337 TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenase, tetrameric.
This model describes tryptophan 5-monooxygenase, a
member of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tyrosine
3-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria [Energy metabolism, Amino acids
and amines].
Length = 464
Score = 392 bits (1009), Expect = e-132
Identities = 188/513 (36%), Positives = 268/513 (52%), Gaps = 71/513 (13%)
Query: 27 QGLTEEEVILEKAASESKEAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETR 86
Q T + +A+ + E +Q +++ + + L++ + + ++HLE+R
Sbjct: 6 QLFTPTRSVRREASIREGDEEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESR 65
Query: 87 VSKMAGIQ-FDVLVKVDMTRR------DLLNLIRSLRQSSSLGGINLLTENNISV----- 134
SK + DVLV V++ DLL + + SS L+
Sbjct: 66 DSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVSSPIRPTLIEAQYTEPGSDDA 125
Query: 135 --KGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY-NGDPI 191
PWFP SDLD C + + Y +LD +HPGF D YR+RR A++A Y +G+PI
Sbjct: 126 TTGVPWFPKKISDLDKCANRVLMYGSELDADHPGFKDTEYRKRRMMFADLALNYKHGEPI 185
Query: 192 PHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFL 251
P ++YT+ E TW ++ + L H C+E+ D + L
Sbjct: 186 PRVEYTEEERKTWGTIYRELRRLYKTHACKEFLDNLPL---------------------L 224
Query: 252 KKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTG 311
+K+ G+ L FL + TG
Sbjct: 225 EKYCGYREDNIPQLEDVSKFLKAK----------------------------------TG 250
Query: 312 FTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSF 371
F LRP AG L+ARDFL+ LAFRVF TQYVRH+ PF+T EPD HELLGHMPLLADPSF
Sbjct: 251 FRLRPVAGYLSARDFLSGLAFRVFHCTQYVRHSADPFYTPEPDTCHELLGHMPLLADPSF 310
Query: 372 AQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKE-NGEVKAYGAGLLSSYGELLHAI 430
AQFSQEIGLASLGAS+E+I+KL+T+Y+FT+EFGLCK+ + + K YGAGLLSS EL HA+
Sbjct: 311 AQFSQEIGLASLGASEEDIKKLATLYFFTIEFGLCKQDDEQFKVYGAGLLSSVAELQHAL 370
Query: 431 SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYT 490
S + + FDP Q +Q YF SFE+AKEK R + +T+ RP+ VR+NPYT
Sbjct: 371 SGSAKIKPFDPDRVCEQECLITTFQNAYFYTRSFEEAKEKMREFTNTIKRPFGVRYNPYT 430
Query: 491 QRVEVLDCVDKLENLMSQLNLEMLHLNTAVNKL 523
+ VEVL + +++L ++ + A++K+
Sbjct: 431 ESVEVLKNSKSITLAVNELRSDLNLVAGALHKI 463
>gnl|CDD|239462 cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxylase (TrpOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tyrosine hydroxylase (TyrOH). TrpOH oxidizes
L-tryptophan to 5-hydroxy-L-tryptophan, the
rate-limiting step in the biosynthesis of serotonin
(5-hydroxytryptamine), a widely distributed hormone and
neurotransmitter.
Length = 287
Score = 345 bits (886), Expect = e-116
Identities = 162/342 (47%), Positives = 199/342 (58%), Gaps = 56/342 (16%)
Query: 137 PWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHID 195
PWFP SDLD C + + Y +LD +HPGF D VYR+RRK A++A Y GDPIP ++
Sbjct: 1 PWFPKKISDLDKCANRVLMYGSELDADHPGFKDNVYRKRRKYFADVAMNYKHGDPIPRVE 60
Query: 196 YTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHT 255
YT+ E TW V+ + L P H C+EY L+KH
Sbjct: 61 YTEEEIKTWGTVYRELNRLYPTHACREYLKNL---------------------PLLEKHC 99
Query: 256 GFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLR 315
G+ L FL + TGFT+R
Sbjct: 100 GYREDNIPQLEDVSRFLKER----------------------------------TGFTIR 125
Query: 316 PAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375
P AG L+ RDFLA LAFRVF TQYVRH+ PF+T EPD HELLGH+PLLADPSFAQFS
Sbjct: 126 PVAGYLSPRDFLAGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLADPSFAQFS 185
Query: 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPE 435
QEIGLASLGASDE+I+KL+T Y+FTVEFGLCK++G++K YGAGLLSS GEL HA+S + +
Sbjct: 186 QEIGLASLGASDEDIQKLATCYFFTVEFGLCKQDGQLKVYGAGLLSSIGELKHALSGEAK 245
Query: 436 HRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVST 477
+ FDP T Q +Q YFV+ESFE+AKEK R + T
Sbjct: 246 VKPFDPKVTCKQECLITTFQEAYFVSESFEEAKEKMREFAKT 287
>gnl|CDD|238215 cd00361, arom_aa_hydroxylase, Biopterin-dependent aromatic amino
acid hydroxylase; a family of non-heme,
iron(II)-dependent enzymes that includes prokaryotic and
eukaryotic phenylalanine-4-hydroxylase (PheOH),
eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic
tryptophan hydroxylase (TrpOH). PheOH converts
L-phenylalanine to L-tyrosine, an important step in
phenylalanine catabolism and neurotransmitter
biosynthesis, and is linked to a severe variant of
phenylketonuria in humans. TyrOH and TrpOH are involved
in the biosynthesis of catecholamine and serotonin,
respectively. The eukaryotic enzymes are all
homotetramers.
Length = 221
Score = 322 bits (827), Expect = e-108
Identities = 134/280 (47%), Positives = 162/280 (57%), Gaps = 60/280 (21%)
Query: 192 PHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFL 251
P +DYT+ E+ATW+ ++ + L+P H C+EY + +L +RIPQLE++S FL
Sbjct: 1 PRVDYTEEEHATWRTLYRRLKKLLPTHACREYLEGLELLG----LPEDRIPQLEDVSEFL 56
Query: 252 KKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTG 311
K TG+TL P AGL++ RDF A
Sbjct: 57 KALTGWTLVPVAGLISPRDFFA-------------------------------------- 78
Query: 312 FTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSF 371
LA F TQY+RH + P +T EPD HEL GH+PLLADPSF
Sbjct: 79 --------------LLAFRVF---PVTQYIRHPEEPDYTPEPDIFHELFGHVPLLADPSF 121
Query: 372 AQFSQEIGLASLGASD-EEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAI 430
A FSQE GLASLGASD EEIEKL+ +YWFTVEFGL KE+GE+KAYGAGLLSSYGEL HA+
Sbjct: 122 ADFSQEYGLASLGASDLEEIEKLARLYWFTVEFGLIKEDGELKAYGAGLLSSYGELQHAL 181
Query: 431 SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEK 470
SDKP+ FDP A PY +QP YFV ESFE KEK
Sbjct: 182 SDKPKRIPFDPERVARTPYDITSFQPTYFVIESFEQLKEK 221
>gnl|CDD|237020 PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.
Length = 275
Score = 192 bits (490), Expect = 2e-57
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 6/175 (3%)
Query: 307 MQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLL 366
TG+ + P GL+ F LA R F ++R + + EPD H++ GH+PLL
Sbjct: 79 QAATGWQVVPVPGLIPFDVFFELLANRRFPVATFIRRPEELDYLQEPDIFHDVFGHVPLL 138
Query: 367 ADPSFAQFSQEIGLASLGASDEE-IEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGE 425
+P FA F Q G L AS E +E L+ +YWFTVEFGL + G ++ YGAG+LSS GE
Sbjct: 139 TNPVFADFMQAYGKLGLRASKEGRLEFLARLYWFTVEFGLIRTPGGLRIYGAGILSSPGE 198
Query: 426 LLHAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFED----AKEKFRRWV 475
L+A+ SD P R FD PY+ +QP YFV +SFE A+ F V
Sbjct: 199 TLYALESDSPNRRPFDLERVMRTPYRIDIFQPTYFVIDSFEQLFDIAEPDFMALV 253
Score = 79.9 bits (198), Expect = 1e-16
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 169 DQVYRQRRKDIAEIAFKYNGDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFA 228
D YR RR E A Y D P IDYT E+A W+ ++ L L+P C E+ +
Sbjct: 1 DAAYRARRDAGMEKAADYTADQ-PWIDYTAEEHAIWQTLYERQLALLPGRACDEFLEGLE 59
Query: 229 MLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDF---LANQ 275
L +RIPQL+E++ L+ TG+ + P GL+ F LAN+
Sbjct: 60 ALGLPK----DRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELLANR 105
>gnl|CDD|239464 cd03348, pro_PheOH, Prokaryotic phenylalanine-4-hydroxylase
(pro_PheOH); a member of the biopterin-dependent
aromatic amino acid hydroxylase family of non-heme,
iron(II)-dependent enzymes that also includes the
eukaryotic proteins, phenylalanine-4-hydroxylase
(eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan
hydroxylase (TrpOH). PheOH catalyzes the hydroxylation
of L-Phe to L-tyrosine (L-Tyr). It uses
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the
physiological electron donor.
Length = 228
Score = 155 bits (393), Expect = 5e-44
Identities = 64/159 (40%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Query: 310 TGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADP 369
TG+T+ GL+ +F LA R F T ++R + + EPD H++ GH+P+L +P
Sbjct: 66 TGWTVVAVPGLIPDDEFFEHLANRRFPVTNFIRRPEELDYLQEPDIFHDIFGHVPMLTNP 125
Query: 370 SFAQFSQEIGLASLGAS-DEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLH 428
FA F Q G L A+ E+ L+ +YW+TVEFGL +E G ++ YGAG+LSS GE L+
Sbjct: 126 VFADFMQAYGKGGLKATGLEDRALLARLYWYTVEFGLIQEPGGLRIYGAGILSSPGETLY 185
Query: 429 AISDK-PEHRVFDPISTAVQPYQDQEYQPIYFVAESFED 466
A+ P FD PY+ +QP YFV +SFE
Sbjct: 186 ALESPDPNRIPFDLERVMRTPYRIDSFQPTYFVIDSFEQ 224
Score = 64.2 bits (157), Expect = 1e-11
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 188 GDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEM 247
D IDYT E+A W+ ++ L+P C + + L +RIP ++
Sbjct: 3 PDEQGQIDYTPEEHAVWRTLYERQAKLLPGRACDAFLEGLEKLGLPT----DRIPDFADV 58
Query: 248 SNFLKKHTGFTLRPAAGLLTARDF---LAN 274
S LK TG+T+ GL+ +F LAN
Sbjct: 59 SERLKAATGWTVVAVPGLIPDDEFFEHLAN 88
>gnl|CDD|225727 COG3186, COG3186, Phenylalanine-4-hydroxylase [Amino acid transport
and metabolism].
Length = 291
Score = 146 bits (369), Expect = 7e-40
Identities = 82/284 (28%), Positives = 119/284 (41%), Gaps = 61/284 (21%)
Query: 192 PHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFL 251
IDY +E+A W+ + + L+ CQE+ D L G+ RIP +E++ L
Sbjct: 38 GVIDYPQAEHAVWRTLIDRQTKLLKGRACQEFLDGLEAL---GLPL-SRIPDFDEINRVL 93
Query: 252 KKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTG 311
++ TG+ + GL+ F
Sbjct: 94 QRETGWQVVAVPGLVPFDVFFD-------------------------------------- 115
Query: 312 FTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSF 371
LL R F + R Y+ EPD H++ GH+P+L P F
Sbjct: 116 --------LLANRRFPVATFMRTPDELDYL---------QEPDIFHDVFGHVPMLTHPVF 158
Query: 372 AQFSQEIGLASLGASDEE-IEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAI 430
A F Q G L A + + L+ +YW+TVEFGL + G +K YGAG+LSS EL++A+
Sbjct: 159 ADFMQAYGKLGLKAIELGRLLMLARLYWYTVEFGLVETPGGLKIYGAGILSSPTELVYAL 218
Query: 431 -SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRR 473
SD P FD PY+ +QP YFV SF+ E +R
Sbjct: 219 ESDSPNRIPFDLEQVMRTPYRIDTFQPTYFVIPSFDQLFELTQR 262
>gnl|CDD|130334 TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric
form. This model describes the smaller, monomeric form
of phenylalanine-4-hydroxylase, as found in a small
number of Gram-negative bacteria. The enzyme
irreversibly converts phenylalanine to tryosine and is
known to be the rate-limiting step in phenylalanine
catabolism in some systems. This family is of biopterin
and metal-dependent hydroxylases is related to a family
of longer, multimeric aromatic amino acid hydroxylases
that have additional N-terminal regulatory sequences.
These include tyrosine 3-monooxygenase,
phenylalanine-4-hydroxylase, and tryptophan
5-monoxygenase [Energy metabolism, Amino acids and
amines].
Length = 248
Score = 134 bits (339), Expect = 3e-36
Identities = 78/279 (27%), Positives = 122/279 (43%), Gaps = 61/279 (21%)
Query: 189 DPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMS 248
D Y++ E+A W + L L+ CQEY D L +RIP +E++
Sbjct: 4 DDQGFDHYSEEEHAVWNTLITRQLKLIEGRACQEYLDGIEQLGLPH----DRIPDFDEIN 59
Query: 249 NFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQ 308
L+ TG+ + GL+ + F
Sbjct: 60 RKLQATTGWRIAAVPGLIPFQTFF------------------------------------ 83
Query: 309 HTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLAD 368
+ LA+ F V T ++R + + EPD H++ GH+PLL +
Sbjct: 84 ----------------EHLANRRFPV---TTWLRTPEELDYLQEPDIFHDIFGHVPLLTN 124
Query: 369 PSFAQFSQEIGLASLGASDEE-IEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELL 427
P FA F+ G L AS +E L+ +YW+T+EFGL + + + YGAG+LSS E +
Sbjct: 125 PVFADFTHTYGKLGLKASALGRVEMLARLYWYTIEFGLVETDQGKRIYGAGILSSPKETV 184
Query: 428 HAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFE 465
+++ SD+P H FD + PY+ +QP+YFV SF+
Sbjct: 185 YSLESDEPLHVAFDLLEAMRTPYRIDIFQPLYFVLPSFK 223
>gnl|CDD|153202 cd04930, ACT_TH, ACT domain of the nonheme iron-dependent aromatic
amino acid hydroxylase, tyrosine hydroxylases (TH). ACT
domain of the nonheme iron-dependent aromatic amino acid
hydroxylase, tyrosine hydroxylases (TH). TH catalyses
the hydroxylation of L-Tyr to
3,4-dihydroxyphenylalanine, the rate limiting step in
the biosynthesis of catecholamines (dopamine,
noradrenaline and adrenaline), functioning as hormones
and neurotransmitters. The enzyme is not regulated by
its amino acid substrate, but instead by phosphorylation
at several serine residues located N-terminal of the ACT
domain, and by feedback inhibition by catecholamines at
the active site. Members of this CD belong to the
superfamily of ACT regulatory domains.
Length = 115
Score = 101 bits (253), Expect = 1e-25
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 26 DQGLTEE-EVILEKAASESKEAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLE 84
D LTE+ E L+ E KE ++ Q A L+ ++EG SSL+RILK E F+ + HLE
Sbjct: 14 DASLTEDAEDDLDSEVFEEKEGKAVPQKATLLFSLKEGFSSLSRILKVFETFEAKIHHLE 73
Query: 85 TRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSSS 120
+R S+ G +VLV+ ++ R DLL LI SLRQ +
Sbjct: 74 SRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAE 109
>gnl|CDD|153176 cd04904, ACT_AAAH, ACT domain of the nonheme iron-dependent,
aromatic amino acid hydroxylases (AAAH). ACT domain of
the nonheme iron-dependent, aromatic amino acid
hydroxylases (AAAH): Phenylalanine hydroxylases (PAH),
tyrosine hydroxylases (TH) and tryptophan hydroxylases
(TPH), both peripheral (TPH1) and neuronal (TPH2)
enzymes. This family of enzymes shares a common
catalytic mechanism, in which dioxygen is used by an
active site containing a single, reduced iron atom to
hydroxylate an unactivated aromatic substrate,
concomitant with a two-electron oxidation of
tetrahydropterin (BH4) cofactor to its quinonoid
dihydropterin form. PAH catalyzes the hydroxylation of
L-Phe to L-Tyr, the first step in the catabolic
degradation of L-Phe; TH catalyses the hydroxylation of
L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting
step in the biosynthesis of catecholamines; and TPH
catalyses the hydroxylation of L-Trp to
5-hydroxytryptophan, the rate limiting step in the
biosynthesis of 5-hydroxytryptamine (serotonin) and the
first reaction in the synthesis of melatonin. Eukaryotic
AAAHs have an N-terminal ACT (regulatory) domain, a
middle catalytic domain and a C-terminal domain which is
responsible for the oligomeric state of the enzyme
forming a domain-swapped tetrameric coiled-coil. The
PAH, TH, and TPH enzymes contain highly conserved
catalytic domains but distinct N-terminal ACT domains
(this CD) and differ in their mechanisms of regulation.
One commonality is that all three eukaryotic enzymes are
regulated in part by the phosphorylation of serine
residues N-terminal of the ACT domain. Members of this
CD belong to the superfamily of ACT regulatory domains.
Length = 74
Score = 79.1 bits (196), Expect = 2e-18
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLI 112
+L+ ++E + +LAR LK E F + H+E+R S+ G +++ V ++ R DL LI
Sbjct: 1 TSLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLI 60
Query: 113 RSLRQSSSL 121
SLR+ +
Sbjct: 61 SSLRRVVAD 69
>gnl|CDD|237598 PRK14056, PRK14056, phenylalanine 4-monooxygenase; Provisional.
Length = 578
Score = 79.3 bits (196), Expect = 1e-15
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 45/176 (25%)
Query: 349 HTVEPDCIHELLGHMPLLADPSFAQFSQ---EIGLASL---------------------- 383
+T PD IHE GH P+LADP++A++ + EIG ++
Sbjct: 114 YTPAPDIIHEAAGHAPILADPTYAEYLRRFGEIGAKAISSKEDHDVFEAVRTLSIVKESP 173
Query: 384 GASDEEIEK--------------------LSTVYWFTVEFGLCKENGEVKAYGAGLLSSY 423
++ EE+ +S ++W+TVE+GL K YGAGLLSS
Sbjct: 174 TSTPEEVAAAENRVIEKQNLVSGLSEAEQISRLFWWTVEYGLIGTLDNPKIYGAGLLSSV 233
Query: 424 GELLHAISDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMS 479
GE H ++D E F + Y + QP FV FE+ E + TM+
Sbjct: 234 GESKHCLTDAVEKVPFSIEACTSTTYDITKMQPQLFVCPDFEELSEVLEEFAETMA 289
Score = 31.2 bits (71), Expect = 1.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 195 DYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKK 253
YT ++A W+ V + Y LQ+ GI ERIP++EEM+ L +
Sbjct: 20 QYTPVDHAVWRYVMRQNHSFLKDVAHPAY---LNGLQSTGI-NIERIPKVEEMNECLAE 74
>gnl|CDD|172547 PRK14055, PRK14055, aromatic amino acid hydroxylase; Provisional.
Length = 362
Score = 73.2 bits (179), Expect = 6e-14
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 310 TGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADP 369
T F+ P +G + +L+ L R F +R ++ PD IH+LLGH+P L P
Sbjct: 153 THFSYYPVSGFVAPHQYLSLLQDRYFPIASVMRTLDKDNFSLTPDLIHDLLGHVPWLLHP 212
Query: 370 SFAQFSQEIG---------LASLGASDEEIEKLST-------VYWFTVEFGLCKENGEVK 413
SF++F +G + +L + + I+ L + +WFTVE GL + + K
Sbjct: 213 SFSEFFINMGRLFTKVIEKVQALPSKKQRIQTLQSNLIAIVRCFWFTVESGLIENHEGRK 272
Query: 414 AYGAGLLSSYGELLHAISD 432
AYGA L+SS EL HA D
Sbjct: 273 AYGAVLISSPQELGHAFID 291
>gnl|CDD|153201 cd04929, ACT_TPH, ACT domain of the nonheme iron-dependent aromatic
amino acid hydroxylase, tryptophan hydroxylases (TPH),
both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT
domain of the nonheme iron-dependent aromatic amino acid
hydroxylase, tryptophan hydroxylases (TPH), both
peripheral (TPH1) and neuronal (TPH2) enzymes. TPH
catalyses the hydroxylation of L-Trp to
5-hydroxytryptophan, the rate limiting step in the
biosynthesis of 5-hydroxytryptamine (serotonin) and the
first reaction in the synthesis of melatonin. Very
little is known about the role of the ACT domain in TPH,
which appears to be regulated by phosphorylation but not
by its substrate or cofactor. Members of this CD belong
to the superfamily of ACT regulatory domains.
Length = 74
Score = 44.3 bits (105), Expect = 4e-06
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLI 112
+++ ++ + LA+ LK + VVH+E+R SK +F++ V + +R L L+
Sbjct: 1 TSVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELV 60
Query: 113 RSLR 116
+ L+
Sbjct: 61 QLLK 64
>gnl|CDD|153152 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonheme
iron-dependent, aromatic amino acid hydroxylases (AAAH).
ACT domain of the nonheme iron-dependent, aromatic
amino acid hydroxylases (AAAH): Phenylalanine
hydroxylases (PAH), tyrosine hydroxylases (TH) and
tryptophan hydroxylases (TPH), both peripheral (TPH1)
and neuronal (TPH2) enzymes. This family of enzymes
shares a common catalytic mechanism, in which dioxygen
is used by an active site containing a single, reduced
iron atom to hydroxylate an unactivated aromatic
substrate, concomitant with a two-electron oxidation of
tetrahydropterin (BH4) cofactor to its quinonoid
dihydropterin form. Eukaryotic AAAHs have an N-terminal
ACT (regulatory) domain, a middle catalytic domain and a
C-terminal domain which is responsible for the
oligomeric state of the enzyme forming a domain-swapped
tetrameric coiled-coil. The PAH, TH, and TPH enzymes
contain highly conserved catalytic domains but distinct
N-terminal ACT domains and differ in their mechanisms of
regulation. One commonality is that all three eukaryotic
enzymes appear to be regulated, in part, by the
phosphorylation of serine residues N-terminal of the ACT
domain. Also included in this CD are the C-terminal ACT
domains of the bifunctional chorismate mutase-prephenate
dehydratase (CM-PDT) enzyme and the prephenate
dehydratase (PDT) enzyme found in plants, fungi,
bacteria, and archaea. The P-protein of Escherichia coli
(CM-PDT) catalyzes the conversion of chorismate to
prephenate and then the decarboxylation and dehydration
to form phenylpyruvate. These are the first two steps in
the biosynthesis of L-Phe and L-Tyr via the shikimate
pathway in microorganisms and plants. The E. coli
P-protein (CM-PDT) has three domains with an N-terminal
domain with chorismate mutase activity, a middle domain
with prephenate dehydratase activity, and an ACT
regulatory C-terminal domain. The prephenate dehydratase
enzyme has a PDT and ACT domain. The ACT domain is
essential to bring about the negative allosteric
regulation by L-Phe binding. L-Phe binds with positive
cooperativity; with this binding, there is a shift in
the protein to less active tetrameric and higher
oligomeric forms from a more active dimeric form.
Members of this CD belong to the superfamily of ACT
regulatory domains.
Length = 75
Score = 37.1 bits (87), Expect = 0.002
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 55 LVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRD--LLNLI 112
LV ++ +LA+ LK + +E+R S+ +++ V + D + +
Sbjct: 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEAL 61
Query: 113 RSLRQSSS 120
L++ +
Sbjct: 62 EELKRVTE 69
>gnl|CDD|222030 pfam13291, ACT_4, ACT domain. ACT domains bind to amino acids and
regulate associated enzyme domains. These ACT domains
are found at the C-terminus of the RelA protein.
Length = 77
Score = 31.3 bits (72), Expect = 0.16
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSK--MAGIQFDVLVKVDMTRRDLL 109
A L + + LA I I K ++ + +A I + VK L
Sbjct: 4 PADLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVK---DLEHLA 60
Query: 110 NLIRSLRQ 117
LIR LR+
Sbjct: 61 RLIRKLRK 68
>gnl|CDD|153203 cd04931, ACT_PAH, ACT domain of the nonheme iron-dependent aromatic
amino acid hydroxylase, phenylalanine hydroxylases
(PAH). ACT domain of the nonheme iron-dependent
aromatic amino acid hydroxylase, phenylalanine
hydroxylases (PAH). PAH catalyzes the hydroxylation of
L-Phe to L-Tyr, the first step in the catabolic
degradation of L-Phe. In PAH, an autoregulatory
sequence, N-terminal of the ACT domain, extends across
the catalytic domain active site and regulates the
enzyme by intrasteric regulation. It appears that the
activation by L-Phe induces a conformational change that
converts the enzyme to a high-affinity and high-activity
state. Modulation of activity is achieved through
inhibition by BH4 and activation by phosphorylation of
serine residues of the autoregulatory region. The
molecular basis for the cooperative activation process
is not fully understood yet. Members of this CD belong
to the superfamily of ACT regulatory domains.
Length = 90
Score = 31.3 bits (71), Expect = 0.22
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 52 TAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVKVD-MTRRDLLN 110
+L+ ++E + +LA++L+ E + H+E+R S++ +++ + +D + L
Sbjct: 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDP 73
Query: 111 LIRSLRQS 118
+I+SLR
Sbjct: 74 IIKSLRND 81
>gnl|CDD|235252 PRK04199, rpl10e, 50S ribosomal protein L10e; Reviewed.
Length = 172
Score = 31.4 bits (72), Expect = 0.61
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 441 PISTAVQPYQDQEYQPIYFVAESFEDAKEKFRR 473
P+ TA + + Q+ + E E AKE RR
Sbjct: 119 PVGTAARVEKGQKIFTVRVNPEHLEAAKEALRR 151
>gnl|CDD|178455 PLN02864, PLN02864, enoyl-CoA hydratase.
Length = 310
Score = 31.7 bits (72), Expect = 0.96
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 286 KAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTK 345
KAA E S + + +L M + LR A G + + + Q + V+ K
Sbjct: 127 KAAILELETLSYEKDSGELLCMNRSTIFLRGAGGFSNSSQPFSYSNYPTNQVSA-VKIPK 185
Query: 346 TPFHTVEPDCIHE-------LLGHM-PLLADPSFAQ---FSQEI--GLASLG 384
+ V D L G PL +DP FA+ F++ I GL +LG
Sbjct: 186 SQPDAVFEDQTQPSQALLYRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLG 237
>gnl|CDD|234275 TIGR03599, YloV, DAK2 domain fusion protein YloV. This model
describes a protein family that contains an N-terminal
DAK2 domain (pfam02734), so named because of similarity
to the dihydroxyacetone kinase family family. The
GTP-binding protein CgtA (a member of the obg family) is
a bacterial GTPase associated with ribosome biogenesis,
and it has a characteristic extension (TIGR03595) in
certain lineages. This protein family described here was
found, by the method of partial phylognetic profiling,
to have a phylogenetic distribution strongly correlated
to that of TIGR03595. This correlation implies some form
of functional coupling.
Length = 530
Score = 31.4 bits (72), Expect = 1.4
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 407 KENGEVKAYGAGLLSSYGELLHAIS-DKPEHRVFDPISTAVQPYQDQEYQPI-------Y 458
KE G V + G GL+ +L A++ + E + P +E+ I +
Sbjct: 170 KEAGVVDSGGQGLVVILEGMLAALTGEPIELAPYKPEPPEGDEIASEEHHDIEFGYCTEF 229
Query: 459 FVAESFEDAKEKFRRWVSTM 478
V + +EKFR+ + +
Sbjct: 230 LVKLKDKFDEEKFRKELEKL 249
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 30.8 bits (70), Expect = 2.3
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 101 VDMTRRDLLNLIRSLRQSSSLGGINL--------LTENNISVKGPWFPTHASDLDN 148
M + + ++RSL +LG +++ LT+N ++VK + D+D+
Sbjct: 327 QRMAKDN--AIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDD 380
>gnl|CDD|212164 cd11650, AT4G37440_like, Uncharacterized protein domain conserved
in plants. This domain contains an extensive protein
sequence fragment that appears conserved in a number of
plant proteins, including the gene product of
Arabidopsis thaliana locus AT4G37440, which has been
identified in transcriptional profiling as expressed at
different levels in white cabbage cultivars.
Length = 253
Score = 30.1 bits (68), Expect = 2.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 53 AALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSK 89
+ + SL IL IEV + V L+ R+SK
Sbjct: 213 DLKSSDLEDNDLSLEEILLKIEVLQSRVHKLKNRLSK 249
>gnl|CDD|236130 PRK07914, PRK07914, hypothetical protein; Reviewed.
Length = 320
Score = 30.1 bits (68), Expect = 2.9
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 23 ELLDQGLTEEE--VILEKAASESKEAESAIQTAA---------LVLRMREGMS-SLARIL 70
ELL L EE V+LE AA K+A + I +AA +V+ G + +LA L
Sbjct: 55 ELLSPSLFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQL 114
Query: 71 KTIEVFKGTVVHLETRVSKMA 91
+ + G VH R++K A
Sbjct: 115 RKL----GAEVHPCARITKAA 131
Score = 28.6 bits (64), Expect = 8.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 282 VILEKAASESKEAESAIQTAA------LVLRMQHTG 311
V+LE AA K+A + I +AA VL + H+G
Sbjct: 68 VVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSG 103
>gnl|CDD|204194 pfam09304, Cortex-I_coil, Cortexillin I, coiled coil. Members of
this family are predominantly found in the
actin-bundling protein Cortexillin I from Dictyostelium
discoideum. They adopt a structure consisting of an
18-heptad-repeat alpha-helical coiled-coil, and are a
prerequisite for the assembly of Cortexillin I.
Length = 107
Score = 28.4 bits (63), Expect = 3.2
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 23 ELLDQGLTEEEVILEKAASESKEAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVH 82
L + ++EE+ +K S A Q A R+RE + + +LK +E+ K +
Sbjct: 24 SLESEKASQEELAKQKDQLRSLLASLEAQKAEREQRLRELQAKIDELLKNLELEKLAKME 83
Query: 83 LETRVSKM 90
LE+R+SK
Sbjct: 84 LESRLSKT 91
>gnl|CDD|200493 cd11356, AmyAc_Sucrose_phosphorylase-like_1, Alpha amylase
catalytic domain found in sucrose phosphorylase-like
proteins (also called sucrose glucosyltransferase,
disaccharide glucosyltransferase, and sucrose-phosphate
alpha-D glucosyltransferase). Sucrose phosphorylase is
a bacterial enzyme that catalyzes the phosphorolysis of
sucrose to yield glucose-1-phosphate and fructose. These
enzymes do not have the conserved calcium ion present in
other alpha amylase family enzymes. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 458
Score = 29.8 bits (68), Expect = 3.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 240 RIPQLEEMS---NFLKKHTGFTLRPAAGLLTARDFLA 273
+P + + NFL H G LRPA G+L + A
Sbjct: 275 SLPPPSDGTTYFNFLASHDGIGLRPAEGILPEEEIDA 311
>gnl|CDD|212538 cd11592, Agmatinase_PAH, Agmatinase-like family includes
proclavaminic acid amidinohydrolase. This agmatinase
subfamily contains bacterial and fungal/metazoan
enzymes, including proclavaminic acid amidinohydrolase
(PAH, EC 3.5.3.22) and Pseudomonas aeruginosa
guanidinobutyrase (GbuA) and guanidinopropionase (GpuA).
PAH hydrolyzes amidinoproclavaminate to yield
proclavaminate and urea in clavulanic acid biosynthesis.
Clavulanic acid is an effective inhibitor of
beta-lactamases and is used in combination with
amoxicillin to prevent the beta-lactam rings of the
antibiotic from hydrolysis and, thus keeping the
antibiotic biologically active. GbuA hydrolyzes
4-guanidinobutyrate (4-GB) into 4-aminobutyrate and urea
while GpuA hydrolyzes 3-guanidinopropionate (3-GP) into
beta-alanine and urea. Mutation studies show that
significant variations in two active site loops in these
two enzymes may be important for substrate specificity.
This subfamily belongs to the ureohydrolase superfamily,
which includes arginase, agmatinase, proclavaminate
amidinohydrolase, and formiminoglutamase.
Length = 289
Score = 29.0 bits (66), Expect = 6.7
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 473 RWVSTMSRPYEV--RFNPYTQRVEVLDCVD 500
R S + RPY +P+ ++V+DC D
Sbjct: 44 RQASRLLRPYNPATGVDPF-DWLKVVDCGD 72
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 29.1 bits (66), Expect = 6.8
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 195 DYTDSEYATWKAVFNTVLDLMPKH-FCQ------EYKDVFAMLQAEGIFTPERIPQLEEM 247
D+ + A + + +T+ + + F + EY ++FA E E +EM
Sbjct: 12 DFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVE-----KEM 66
Query: 248 SNFL-KKHTGFTLRP 261
F K LRP
Sbjct: 67 YTFKDKGGRSLALRP 81
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive
force interconversion].
Length = 147
Score = 27.8 bits (62), Expect = 8.7
Identities = 11/58 (18%), Positives = 27/58 (46%)
Query: 3 AVAAAQKSREMFAIKKSYSIELLDQGLTEEEVILEKAASESKEAESAIQTAALVLRMR 60
+A+A+++++ A+ + + +L + E + I+E A E + A R +
Sbjct: 34 GLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREK 91
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed.
Length = 679
Score = 28.7 bits (65), Expect = 9.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 298 IQTAALVLRMQHTG 311
IQ + L R++ TG
Sbjct: 347 IQVSGLAQRLRATG 360
>gnl|CDD|234930 PRK01261, aroD, 3-dehydroquinate dehydratase; Provisional.
Length = 229
Score = 28.3 bits (63), Expect = 9.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 455 QPIYFVAESFEDAK---EKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLN 510
QPI + F+D K E+F+ V + YE+RF+ + ++ ++S LN
Sbjct: 20 QPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDH-----SIESEPEIISALN 73
>gnl|CDD|226014 COG3483, TDO2, Tryptophan 2,3-dioxygenase (vermilion) [Amino acid
transport and metabolism].
Length = 262
Score = 28.2 bits (63), Expect = 9.7
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 446 VQPYQD-QEYQPIYFVAESFEDAKEKFRRW----VSTMSR 480
++ Y+D Q Y +Y +AE D ++ FRRW V+T+ R
Sbjct: 187 LEVYRDPQRYWELYELAEKLVDLEDSFRRWRFRHVTTVER 226
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 28.6 bits (64), Expect = 9.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 486 FNPYTQRVEVLDCVDKLENLMSQLN 510
FNPY ++E D + +L N +S+ N
Sbjct: 244 FNPYVTQIEPHDYMAELFNAVSRFN 268
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.382
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,153,758
Number of extensions: 2692043
Number of successful extensions: 2906
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2874
Number of HSP's successfully gapped: 64
Length of query: 532
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 431
Effective length of database: 6,457,848
Effective search space: 2783332488
Effective search space used: 2783332488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.5 bits)