RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14226
(532 letters)
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
hydroxylase, phosphorylation, intrasteric regulation,
allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
d.58.18.3 d.178.1.1 PDB: 2phm_A
Length = 429
Score = 411 bits (1057), Expect = e-140
Identities = 191/462 (41%), Positives = 263/462 (56%), Gaps = 56/462 (12%)
Query: 41 SESKEAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDVLVK 100
S ++ + +L+ ++E + +LA++L+ E + H+E+R S++ +++
Sbjct: 23 SYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTY 82
Query: 101 VDMTRRDLLNLIRSLRQSSSLGGINLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDL 160
+D + +L I ++ ++ L+ + PWFP +LD + + Y +L
Sbjct: 83 LDKRTKPVLGSIIKSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGAEL 142
Query: 161 DMNHPGFADQVYRQRRKDIAEIAFKY-NGDPIPHIDYTDSEYATWKAVFNTVLDLMPKHF 219
D +HPGF D VYR RRK A+IA+ Y +G PIP ++YT+ E TW VF T+ L H
Sbjct: 143 DADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYTEEEKQTWGTVFRTLKALYKTHA 202
Query: 220 CQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTE 279
C E+ +F +L+ F + IPQLE++S FL
Sbjct: 203 CYEHNHIFPLLEKYCGFREDNIPQLEDVS---------------------QFL------- 234
Query: 280 EEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQ 339
TGF LRP AGLL++RDFL LAFRVF TQ
Sbjct: 235 ---------------------------QTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQ 267
Query: 340 YVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWF 399
Y+RH P +T EPD HELLGH+PL +D SFAQFSQEIGLASLGA DE IEKL+T+YWF
Sbjct: 268 YIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWF 327
Query: 400 TVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQEYQPIYF 459
TVEFGLCKE +KAYGAGLLSS+GEL + +SDKP+ + TA Q Y E+QP+Y+
Sbjct: 328 TVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQPLYY 387
Query: 460 VAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDK 501
VAESF DAKEK R + +T+ RP+ VR++PYTQRVEVLD +
Sbjct: 388 VAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQ 429
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis,
non-heme iron, P substrate; 2.30A {Rattus norvegicus}
SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Length = 343
Score = 389 bits (999), Expect = e-133
Identities = 208/390 (53%), Positives = 266/390 (68%), Gaps = 56/390 (14%)
Query: 135 KGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY-NGDPIPH 193
K PWFP S+LD C+HL+TK++PDLD++HPGF+DQVYRQRRK IAEIAF+Y +G+PIPH
Sbjct: 8 KVPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKLIAEIAFQYKHGEPIPH 67
Query: 194 IDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKK 253
++YT E ATWK V+ T+ L H C+E+ + F +L+ + + IPQLE++S
Sbjct: 68 VEYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDVS----- 122
Query: 254 HTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFT 313
FL + TGF
Sbjct: 123 ----------------RFL----------------------------------KERTGFQ 132
Query: 314 LRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQ 373
LRP AGLL+ARDFLASLAFRVFQ TQY+RH +P H+ EPDC HELLGH+P+LAD +FAQ
Sbjct: 133 LRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADRTFAQ 192
Query: 374 FSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDK 433
FSQ+IGLASLGASDEEIEKLSTVYWFTVEFGLCK+NGE+KAYGAGLLSSYGELLH++S++
Sbjct: 193 FSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEE 252
Query: 434 PEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRV 493
PE R FDP + AVQPYQDQ YQP+YFV+ESF DAK+K R + S + RP+ V+F+PYT +
Sbjct: 253 PEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAI 312
Query: 494 EVLDCVDKLENLMSQLNLEMLHLNTAVNKL 523
+VLD ++ + + E+ L A++ +
Sbjct: 313 DVLDSPHTIQRSLEGVQDELHTLAHALSAI 342
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate
facial triad, tetrahydrobiopterin, oxidoreductase; HET:
H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A*
1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A
3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Length = 325
Score = 379 bits (973), Expect = e-129
Identities = 174/377 (46%), Positives = 223/377 (59%), Gaps = 56/377 (14%)
Query: 122 GGINLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAE 181
++ L+ + PWFP +LD + + Y +LD +HPGF D VYR RRK A+
Sbjct: 2 ATVHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFAD 61
Query: 182 IAFKY-NGDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPER 240
IA+ Y +G PIP ++Y + E TW VF T+ L H C EY +F +L+ F +
Sbjct: 62 IAYNYRHGQPIPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDN 121
Query: 241 IPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQT 300
IPQLE++S FL
Sbjct: 122 IPQLEDVS---------------------QFL---------------------------- 132
Query: 301 AALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELL 360
TGF LRP AGLL++RDFL LAFRVF TQY+RH P +T EPD HELL
Sbjct: 133 ------QTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELL 186
Query: 361 GHMPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLL 420
GH+PL +D SFAQFSQEIGLASLGA DE IEKL+T+YWFTVEFGLCK+ +KAYGAGLL
Sbjct: 187 GHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLL 246
Query: 421 SSYGELLHAISDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSR 480
SS+GEL + +S+KP+ + TA+Q Y E+QP+Y+VAESF DAKEK R + +T+ R
Sbjct: 247 SSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPR 306
Query: 481 PYEVRFNPYTQRVEVLD 497
P+ VR++PYTQR+EVLD
Sbjct: 307 PFSVRYDPYTQRIEVLD 323
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase
catalytic domain fold, oxidoreductase; HET: HBI; 1.71A
{Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A*
3hfb_A* 3e2t_A*
Length = 301
Score = 327 bits (839), Expect = e-109
Identities = 150/354 (42%), Positives = 200/354 (56%), Gaps = 56/354 (15%)
Query: 135 KGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY-NGDPIPH 193
PWFP SDLD+C + + Y +LD +HPGF D VYR+RRK A++A Y +GDPIP
Sbjct: 3 SVPWFPKKISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPK 62
Query: 194 IDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKK 253
+++T+ E TW VF + L P H C+EY +L + + IPQLE++SNFLK+
Sbjct: 63 VEFTEEEIKTWGTVFRELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKE 122
Query: 254 HTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFT 313
TGF++RP AG L+ RDFL+ A V +T
Sbjct: 123 RTGFSIRPVAGYLSPRDFLSGL------------------AFRVFHCTQYVRHSSDPFYT 164
Query: 314 LRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQ 373
P D HELLGH+PLLA+PSFAQ
Sbjct: 165 PEP-------------------------------------DTCHELLGHVPLLAEPSFAQ 187
Query: 374 FSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDK 433
FSQEIGLASLGAS+E ++KL+T Y+FTVEFGLCK++G+++ +GAGLLSS EL HA+S
Sbjct: 188 FSQEIGLASLGASEEAVQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGH 247
Query: 434 PEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFN 487
+ + FDP T Q +Q +YFV+ESFEDAKEK R + T+ RP+ V++N
Sbjct: 248 AKVKPFDPKITCKQECLITTFQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYN 301
>1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase, dihydrobiopterin,
bacterial enzyme; HET: HBI; 1.40A {Chromobacterium
violaceum} SCOP: d.178.1.1 PDB: 1ltv_A 1ltu_A*
Length = 297
Score = 280 bits (718), Expect = 2e-91
Identities = 69/338 (20%), Positives = 123/338 (36%), Gaps = 65/338 (19%)
Query: 163 NHPGFADQVYRQRRKD-IAEIAFKYNGDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQ 221
+ F R+ ++ A + P P Y+ ++ATW ++ L+P C
Sbjct: 3 DRADFVVPDITTRKNVGLSHDANDF-TLPQPLDRYSAEDHATWATLYQRQCKLLPGRACD 61
Query: 222 EYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEE 281
E+ + L+ +R+P +++ L TG+ + GL+ F
Sbjct: 62 EFLEGLERLE----VDADRVPDFNKLNEKLMAATGWKIVAVPGLIPDDVFFE-------- 109
Query: 282 VILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYV 341
L R F + ++
Sbjct: 110 --------------------------------------HLANRRFPVT---------WWL 122
Query: 342 RHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASD-EEIEKLSTVYWFT 400
R + EPD H+L GH+PLL +P FA + + G + A + L+ +YW+T
Sbjct: 123 REPHQLDYLQEPDVFHDLFGHVPLLINPVFADYLEAYGKGGVKAKALGALPMLARLYWYT 182
Query: 401 VEFGLCKENGEVKAYGAGLLSSYGELLHAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYF 459
VEFGL ++ YGAG+LSS E ++ + S P FD + Y+ +Q YF
Sbjct: 183 VEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQKTYF 242
Query: 460 VAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLD 497
V +SF+ + + + ++ ++
Sbjct: 243 VIDSFKQLFDATAPDFAPLYL--QLADAQPWGAGDIAP 278
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin,
stability, flexibility, alkaptonuria, oxidoreductase;
1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Length = 275
Score = 246 bits (629), Expect = 3e-78
Identities = 78/328 (23%), Positives = 129/328 (39%), Gaps = 74/328 (22%)
Query: 182 IAFKYN-GDPIP----HIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIF 236
+A +P I+++ E W+ +F + + C EY + A L
Sbjct: 1 MAKGTKYVSKVPDEHGFIEWSTEENLIWQELFTRQIACIKDKACDEYHEGLAKLN----L 56
Query: 237 TPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAES 296
+RIPQL+E+S LK TG+ P L+ +F
Sbjct: 57 PTDRIPQLDEVSKVLKVSTGWECYPVPALIGFGEFFR----------------------- 93
Query: 297 AIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCI 356
LL+ + F + ++R + + EPD
Sbjct: 94 -----------------------LLSEKKFPVA---------TFIRSREEMDYLQEPDIF 121
Query: 357 HELLGHMPLLADPSFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYG 416
HE+ GH PLL + SFA +++ G L A+ E+ L+ +YWFT+EFGL ++ YG
Sbjct: 122 HEIFGHCPLLTNSSFANYTEAYGKMGLNATKEQRVFLARLYWFTIEFGLLDTPKGLRIYG 181
Query: 417 AGLLSSYGELLHAISDK-PEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWV 475
G+LSS GE +A+++ + + FD + PY+ QPIY++ D E + V
Sbjct: 182 GGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIMQPIYYMLTKVSDLDEIRKFEV 241
Query: 476 STMSR---------PYEVRFNPYTQRVE 494
+ +E +F +E
Sbjct: 242 DDIMELVAQAEALGLHEAKFPVKKASLE 269
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 6e-11
Identities = 53/337 (15%), Positives = 105/337 (31%), Gaps = 84/337 (24%)
Query: 15 AIKKSYSIELLDQGLTEEEV--ILEKAASESKEA--ESAIQTAALVL-----RMREGMSS 65
A S++ LT +EV +L K + + T L +R+G+++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 66 LARIL-----KTIEVFKGTVVHLETRVSK----MAGIQF--DVLV--KV------DMTRR 106
K + + ++ LE + + F + + D+ +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKS 402
Query: 107 DLLNLIRSLRQSSSLGGINLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPG 166
D++ ++ L + S L+ + K + L+ L +Y L H
Sbjct: 403 DVMVVVNKLHKYS------LVEKQP---KESTISIPSIYLELKVKLENEYA--L---HRS 448
Query: 167 FADQVYRQRRKDIAEIAFKYNGDPIPHID-Y---------TDSEYATWKAVFNTV-LDL- 214
D Y + F + P++D Y + E+ +F V LD
Sbjct: 449 IVDH-YNIPKT------FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 215 ----------MPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAG 264
+ + L+ + + P+ E + N + F +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD---FLPKIEEN 558
Query: 265 LLTARDF-LANQGL-TEEEVILEKAASESKEAESAIQ 299
L+ ++ L L E+E I E EA +Q
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFE-------EAHKQVQ 588
Score = 50.6 bits (120), Expect = 1e-06
Identities = 98/643 (15%), Positives = 164/643 (25%), Gaps = 243/643 (37%)
Query: 15 AIKKSYSI----ELLDQGLTEEEV--ILEKAASESKEAESAIQTAALVLRMREGMSSLAR 68
A ++ ++ L++EE+ I+ SK+A S L + + +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIM-----SKDAVSGTLRLFWTLL-SKQEEMVQK 81
Query: 69 ILKTIEV----FKGTVVHLETRVSKMAGIQF-----------DVLVKVDMTRRDLLNLIR 113
++ + F + + E R M + V K +++R +R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 114 S-LRQSSSLGGINLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGF----- 167
L + L N+ + G + G
Sbjct: 142 QALLE--------LRPAKNVLIDG----------------V-----------LGSGKTWV 166
Query: 168 ADQVYRQRRKDIAEIAFKYNGDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVF 227
A V + + I + W + N C + V
Sbjct: 167 ALDVCLSYK---VQCKM---DFKI----F-------WLNLKN----------CNSPETVL 199
Query: 228 AMLQA----------EGIFTPERIPQL-----EEMSNFLKKHT----------------- 255
MLQ I E+ LK
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 256 -GFTLRPAAGLLTAR-----DFLANQ------------GLTEEEV--ILEKAASESKEA- 294
F L LLT R DFL+ LT +EV +L K +
Sbjct: 260 NAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 295 -ESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTKT-PFHTVE 352
+ T L + A + RD LA+ +H T+
Sbjct: 319 PREVLTTNPRRLSI---------IAESI--RDGLATW--------DNWKHVNCDKLTTII 359
Query: 353 PDCIHELLGHMPLLADPSFAQFS--QEIGLASLGASDEEI-EKLSTVYWFTVEF------ 403
++ L P F + S I L ++ WF V
Sbjct: 360 ESSLNVL---EPAEYRKMFDRLSVFPP---------SAHIPTILLSLIWFDVIKSDVMVV 407
Query: 404 -------GLCKENGEVKAYGAGLLSSYGELLHAISDKPE-HR----------VFDPISTA 445
L ++ + + S Y EL + ++ HR FD
Sbjct: 408 VNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDL 464
Query: 446 VQPYQDQEYQPIYF-------VAESFEDAKEKFR------RWVSTMSRPYEVRFNPYTQR 492
+ PY DQ Y Y E E FR R++ ++R +
Sbjct: 465 IPPYLDQ-Y--FYSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQ-----KIRHDSTA-- 513
Query: 493 VEVLDCVDKLENLMSQLNLEMLHL----NTAVNKLRQTFDFLP 531
+ + N + QL ++ + DFLP
Sbjct: 514 ---WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Score = 38.7 bits (89), Expect = 0.005
Identities = 77/493 (15%), Positives = 152/493 (30%), Gaps = 117/493 (23%)
Query: 2 MAVAAAQKSREMFAIKKSYSIELLDQG-LTEEEVILEKAAS-----ESKEAESAIQTAAL 55
+A+ + K + I L+ E +LE + + ++ +
Sbjct: 166 VALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 56 VLRMREGMSSLARILKTIEVFKGTVVHL----ETRVSKMAGIQFDVLVKVDMTRR----- 106
LR+ + L R+LK+ + ++ ++ L + F++ K+ +T R
Sbjct: 224 KLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVT 278
Query: 107 DLLNLIRSLRQSSSLGGINLLTENNISVKGPWFPTHASDLDNCNHLMTKYEPDLDMNHPG 166
D L+ + S + L + S+ + DL ++ +P
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----------PREVLTTNP- 327
Query: 167 FADQVYRQRRKDIAEIAFKYNGDPIPHIDYTDSEYATWKAVFNTVLD-----LMPKHFCQ 221
++ IA D + D K T+++ L P
Sbjct: 328 RR----------LSIIAESIR-DGLATWDNWK-HVNCDK--LTTIIESSLNVLEPA---- 369
Query: 222 EYKDVFAMLQAEGIFTPE--RIP--------------QLEEMSNFLKKHTGFTLRPAAGL 265
EY+ +F L +F P IP + + N L K++ +P
Sbjct: 370 EYRKMFDRL---SVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 266 LTARD-FLANQGLTEEEVILEKAASESKEAESAIQTAALVLRM------QHTGFTLRPAA 318
++ +L + E E L ++ + + L+ H G L+
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 319 GLLTARDFLAS---LAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375
R L L FR + Q +RH T ++ + L +
Sbjct: 486 --HPERMTLFRMVFLDFRFLE--QKIRHDSTAWNASG--------SILNTLQQ--LKFYK 531
Query: 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSS-YGELLHAISDKP 434
I +D + E+L ++F + L+ S Y +LL
Sbjct: 532 PYICD-----NDPKYERLVNAI---LDF--------LPKIEENLICSKYTDLLRIALMAE 575
Query: 435 EHRVFDPISTAVQ 447
+ +F+ VQ
Sbjct: 576 DEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 1e-08
Identities = 49/297 (16%), Positives = 89/297 (29%), Gaps = 89/297 (29%)
Query: 23 ELLD--QGLT--EEEVILEKAASESKEAESAIQTAALVLRM------R--EGMSSLARIL 70
EL +G T + ++ A +E+ ES + + + R E + +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-- 319
Query: 71 KTIEVFKGTVVHLETRVSKMAGIQFDVLVKVDMTRRDLLNLIRSLRQSS--------SLG 122
+ + ++ + E S M I ++T+ + + + SL
Sbjct: 320 -PPSILEDSLENNEGVPSPMLSIS-------NLTQEQVQDYVNKTNSHLPAGKQVEISL- 370
Query: 123 GINLLTENNISVKGPWFPTHASDLDN-CNHL-MTKYEPDLDMNH-PGFADQVYRQRRKDI 179
+N N+ V GP L L K LD + P + +R+
Sbjct: 371 -VN--GAKNLVVSGP-----PQSLYGLNLTLRKAKAPSGLDQSRIP------FSERK--- 413
Query: 180 AEIAFKYNGDPI--P-HIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIF 236
+ F P+ P H S A DL+ + KD+
Sbjct: 414 --LKFSNRFLPVASPFH-----SHLLV-PASDLINKDLVKNNVSFNAKDI---------- 455
Query: 237 TPERIPQLEEMSNFLKKHT--GFTLRPAAGLLTARDFLANQGLTEEEVILEKAASES 291
+IP T G LR +G ++ R + + + V E
Sbjct: 456 ---QIPV---------YDTFDGSDLRVLSGSISER--IVDC-IIRLPVKWETTTQFK 497
Score = 49.7 bits (118), Expect = 2e-06
Identities = 63/362 (17%), Positives = 109/362 (30%), Gaps = 131/362 (36%)
Query: 196 YTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHT 255
Y S+ A + V+ + HF Y G I L+ + N T
Sbjct: 1636 YKTSKAA--QDVW----NRADNHFKDTY----------GF----SI--LDIVINNPVNLT 1673
Query: 256 GFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLR-----MQHT 310
G ++ A + E ++ K +E E + + R + T
Sbjct: 1674 -IHFGGEKGKRIRENYSA---MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 311 GFTLRPAAGLLTARDFLASLA-FRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADP 369
FT +PA L L A F +S G +P AD
Sbjct: 1730 QFT-QPA--L-----TLMEKAAFEDLKSK----------------------GLIP--ADA 1757
Query: 370 SFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFG-LCKENGEVKAYGAGLLS------- 421
+FA G SLG E+ L + A ++S
Sbjct: 1758 TFA------GH-SLG-----------------EYAALA-------SL-ADVMSIESLVEV 1785
Query: 422 -SY-GELLHAISDKPEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMS 479
Y G + + E + A+ P + VA SF E + V +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGR---------VAASFSQ--EALQYVVERVG 1834
Query: 480 RPYE-----VRFN-PYTQRV---EVLDCVDKLENLMSQLNLEMLHLNTAVNKLRQTFDFL 530
+ V +N Q V + L +D + N+++ + L+ + +L+++
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGD-LRALDTVTNVLNFIKLQ----KIDIIELQKSLSLE 1889
Query: 531 PI 532
+
Sbjct: 1890 EV 1891
Score = 48.1 bits (114), Expect = 8e-06
Identities = 98/603 (16%), Positives = 167/603 (27%), Gaps = 202/603 (33%)
Query: 6 AAQKSREMFAIKKSYSIELLDQGLTEEEVILEKAA------SESKEAESAIQTAALVLRM 59
A + +E F E E E S E Q +
Sbjct: 29 IASQLQEQFNKILPEPTEGFAAD-DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV---- 83
Query: 60 REGMSSLARILKTIE--VFKGTVVHLETRVSKMAGIQFDVLVKVD-----------MTRR 106
L L E +G +H +K+ LVK M +R
Sbjct: 84 ------LNLCLTEFENCYLEGNDIH--ALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 107 DLLNLIRS-LRQSSSLGGINLLTE-----NNISVKGPWFPTHASDLDNCNHLMTKYEPDL 160
S L ++ G L+ N +F +L L Y +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD----YFE----EL---RDLYQTYHVLV 184
Query: 161 D-------------MNHPGFADQVYRQRRKDIAEIAFKYNGDPIPHIDYTDSEYATWKAV 207
+ A++V+ Q +I + + N P DY S +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGL-NI--LEWLENPSNTPDKDYLLSIPISCP-- 239
Query: 208 FNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLT 267
V+ L H+ + G FTP E+ ++LK G T + GL+T
Sbjct: 240 LIGVIQLA--HYV-------VTAKLLG-FTPG------ELRSYLK---GATGH-SQGLVT 279
Query: 268 ARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFL 327
A A +E+ ES + + L
Sbjct: 280 AV-----------------AIAETDSWESFFVSVRKAIT-------------------VL 303
Query: 328 ASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHM-PLLA--DPSFAQFSQEIGL--AS 382
+ R + +T P +E D + G P+L+ + + Q + +
Sbjct: 304 FFIGVR---CYEAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 383 LGASDEEIEKLSTVYWFTVEFGLCKENGE----VKAYGAGLLSS-YG-----ELLHAISD 432
L + +++E +S V NG V +G S YG A S
Sbjct: 360 L-PAGKQVE-ISLV------------NGAKNLVV----SGPPQSLYGLNLTLRKAKAPSG 401
Query: 433 KPEHRV------------FDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSR 480
+ R+ F P+++ P+ + A + + +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVAS---PFHS----HLL------VPASDLINKDLV---- 444
Query: 481 PYEVRFNPYTQRVEVLDCVD----------KLENLMSQLNLEMLHLNTAVNKLRQT--FD 528
V FN ++ V D D E ++ + + T + + T D
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT-QFKATHILD 503
Query: 529 FLP 531
F P
Sbjct: 504 FGP 506
Score = 45.0 bits (106), Expect = 6e-05
Identities = 90/516 (17%), Positives = 142/516 (27%), Gaps = 195/516 (37%)
Query: 113 RSLRQSSSLGGINLLTENNISVKGP---WFPTHASDL-DNCNHLMTKYEPDLDMNHPGFA 168
R L + S G + E+ + V P +F AS L + N ++ EP GFA
Sbjct: 7 RPL--TLSHGSL----EHVLLV--PTASFF--IASQLQEQFNKILP--EPT-----EGFA 49
Query: 169 DQVYRQRRKDIAEIAFKYNGDPIPHIDYTDSEYATWKAV-FNTVLDLMPKHFCQEY---K 224
AE+ K+ + Y S K F+ VL+L F Y
Sbjct: 50 AD---DEPTTPAELVGKF-------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 225 DVFAMLQAEGIFTPERIPQLEEMSNFLK--------KHTGFTLRPAAGLLTA-RDFLAN- 274
D+ A+ E L + +K F + + L A + A
Sbjct: 100 DIHALAAK---LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 275 ------QGLTE---EEVILEKAASESKE-AESAIQTAALVL-----------RMQHTGFT 313
QG T+ EE L I+ +A L ++ G
Sbjct: 157 VAIFGGQGNTDDYFEE--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 314 L---------RPAAGLLTARDFLASLAF-----RVFQSTQYVRHTKTPFHTVEP----DC 355
+ P D+L S+ V Q YV K P
Sbjct: 215 ILEWLENPSNTPDK------DYLLSIPISCPLIGVIQLAHYVVTAKL--LGFTPGELRSY 266
Query: 356 IHELLGHMPLL--------AD--PSFAQFSQE-------IGLASLGA------SDEEIEK 392
+ GH L D SF ++ IG+ A +E
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 393 LSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQ 452
EN E G+ S +L +IS+ + +V D + +
Sbjct: 327 -------------SLENNE------GVPSP---ML-SISNLTQEQVQDYV-NKTNSHLPA 362
Query: 453 EYQPIY---------FV----AESFEDAKEKFRRWVSTMSRPYEV---RFNPYTQRVEVL 496
+ + V +S R+ P + R P+++R
Sbjct: 363 G-KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK----AKAPSGLDQSRI-PFSER---- 412
Query: 497 DCVDKLENLMSQLNLEMLHLNTAVNKLRQTFDFLPI 532
KL+ + FLP+
Sbjct: 413 -------------------------KLKFSNRFLPV 423
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein;
ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Length = 248
Score = 31.5 bits (71), Expect = 0.60
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 370 SFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLL-SSYGELLH 428
++ + GL AS EE+++L+ + + N GAGL+ + +
Sbjct: 153 TYCVINNRGGLVHPLASVEELDELANL--LQIPLCAGTINRGSDVIGAGLVVNDWAAFCG 210
Query: 429 AISDKPE 435
+ E
Sbjct: 211 LDTTSTE 217
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro
closure, subdomain, structural genomics, PSI; 2.50A
{Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Length = 224
Score = 30.3 bits (68), Expect = 1.3
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 370 SFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLL-SSYGELLH 428
S+ S + GL S ++ E+LS++ V N GAG++ + Y +
Sbjct: 150 SYCSLSNQGGLVHPQTSVQDQEELSSL--LQVPLVAGTVNRGSSVVGAGMVVNDYLAVTG 207
Query: 429 AISDKPE 435
+ PE
Sbjct: 208 LDTTAPE 214
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 30.3 bits (68), Expect = 1.3
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 27/128 (21%)
Query: 214 LMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKH----TGFTLRPAAGLLTAR 269
L+P E V IF+ E I EEM H +G + +
Sbjct: 63 LLPISGTNEAGKVDT------IFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKT 116
Query: 270 DFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPA---------AGL 320
+ + + +++ + + AE I A +QHT FT+ A G+
Sbjct: 117 NRTLVKLMERDDIAIYNSIPT---AEGTIMMA-----IQHTDFTIHGANVAVLGLGRVGM 168
Query: 321 LTARDFLA 328
AR F A
Sbjct: 169 SVARKFAA 176
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich,
hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB:
1u7q_A 2a00_A* 2a29_A*
Length = 156
Score = 27.9 bits (62), Expect = 4.7
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 268 ARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGL 320
A +F+ QG+ E+ + + A S E+ + ++L Q R L
Sbjct: 24 ASEFIPAQGVDEKTL-ADAAQLASLADETPEGRSIVILAKQRFNLRERDVQSL 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 4.7
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 221 QEYKDVFAMLQAEGIFTPERIPQL 244
Q K + A L+ ++ + P L
Sbjct: 20 QALKKLQASLK---LYADDSAPAL 40
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 222
Score = 28.4 bits (63), Expect = 5.9
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 370 SFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLL 420
S + L + AS EEI + + G N V GA +
Sbjct: 145 SMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTV--NHGVTLIGACSV 193
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 28.0 bits (62), Expect = 7.5
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 458 YFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDCVDKLENLMSQLNLEMLHLN 517
+ +AES EDA + W S +S+ V + + E+ D +N + L++ ++
Sbjct: 134 HLIAESPEDASQ----WFSVLSQ---VHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSV 186
Query: 518 TAVNKLRQTFDFLPI 532
A + + F+ I
Sbjct: 187 CASDSPDRPNSFVII 201
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Length = 191
Score = 27.3 bits (61), Expect = 10.0
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 45 EAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRV 87
+ ES++ A ++ + EG LAR+ +G ++ +
Sbjct: 148 DNESSLSLAKQIISLVEGGLLLARLYGDETFLEGVRHFIDQTI 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.382
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,105,092
Number of extensions: 510861
Number of successful extensions: 1460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1444
Number of HSP's successfully gapped: 37
Length of query: 532
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 434
Effective length of database: 3,965,535
Effective search space: 1721042190
Effective search space used: 1721042190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)