RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14226
(532 letters)
>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 336
Score = 446 bits (1150), Expect = e-156
Identities = 205/390 (52%), Positives = 263/390 (67%), Gaps = 56/390 (14%)
Query: 135 KGPWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKY-NGDPIPH 193
K PWFP S+LD C+HL+TK++PDLD++HPGF+DQVYRQRRK IAEIAF+Y +G+PIPH
Sbjct: 1 KVPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKLIAEIAFQYKHGEPIPH 60
Query: 194 IDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKK 253
++YT E ATWK V+ T+ L H C+E+ + F +L+ + + IPQLE++S FLK+
Sbjct: 61 VEYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKE 120
Query: 254 HTGFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFT 313
TGF LRP AGLL+ARDFLA
Sbjct: 121 RTGFQLRPVAGLLSARDFLA---------------------------------------- 140
Query: 314 LRPAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQ 373
L R F Q TQY+RH +P H+ EPDC HELLGH+P+LAD +FAQ
Sbjct: 141 ------SLAFRVF---------QCTQYIRHASSPMHSPEPDCCHELLGHVPMLADRTFAQ 185
Query: 374 FSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDK 433
FSQ+IGLASLGASDEEIEKLSTVYWFTVEFGLCK+NGE+KAYGAGLLSSYGELLH++S++
Sbjct: 186 FSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEE 245
Query: 434 PEHRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRV 493
PE R FDP + AVQPYQDQ YQP+YFV+ESF DAK+K R + S + RP+ V+F+PYT +
Sbjct: 246 PEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAI 305
Query: 494 EVLDCVDKLENLMSQLNLEMLHLNTAVNKL 523
+VLD ++ + + E+ L A++ +
Sbjct: 306 DVLDSPHTIQRSLEGVQDELHTLAHALSAI 335
>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo
sapiens) [TaxId: 9606]}
Length = 307
Score = 433 bits (1116), Expect = e-151
Identities = 172/361 (47%), Positives = 217/361 (60%), Gaps = 56/361 (15%)
Query: 137 PWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHID 195
PWFP +LD + + Y +LD +HPGF D VYR RRK A+IA+ Y G PIP ++
Sbjct: 2 PWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVE 61
Query: 196 YTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHT 255
Y + E TW VF T+ L H C EY +F +L+ F + IPQLE++S FL+ T
Sbjct: 62 YMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCT 121
Query: 256 GFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLR 315
GF LRP AGLL++RDFL
Sbjct: 122 GFRLRPVAGLLSSRDFL------------------------------------------- 138
Query: 316 PAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375
LA FRVF TQY+RH P +T EPD HELLGH+PL +D SFAQFS
Sbjct: 139 ---------GGLA---FRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFS 186
Query: 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPE 435
QEIGLASLGA DE IEKL+T+YWFTVEFGLCK+ +KAYGAGLLSS+GEL + +S+KP+
Sbjct: 187 QEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPK 246
Query: 436 HRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEV 495
+ TA+Q Y E+QP+Y+VAESF DAKEK R + +T+ RP+ VR++PYTQR+EV
Sbjct: 247 LLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEV 306
Query: 496 L 496
L
Sbjct: 307 L 307
>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 290
Score = 392 bits (1009), Expect = e-135
Identities = 159/343 (46%), Positives = 205/343 (59%), Gaps = 56/343 (16%)
Query: 137 PWFPTHASDLDNCNHLMTKYEPDLDMNHPGFADQVYRQRRKDIAEIAFKYN-GDPIPHID 195
PWFP SDLD+C + + Y +LD +HPGF D VYR+RRK A++A Y GDPIP ++
Sbjct: 3 PWFPKKISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPKVE 62
Query: 196 YTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEMSNFLKKHT 255
+T+ E TW VF + L P H C+EY +L + + IPQLE++SNFLK+ T
Sbjct: 63 FTEEEIKTWGTVFRELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKERT 122
Query: 256 GFTLRPAAGLLTARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLR 315
GF++RP AG L+ RDFL
Sbjct: 123 GFSIRPVAGYLSPRDFL------------------------------------------- 139
Query: 316 PAAGLLTARDFLASLAFRVFQSTQYVRHTKTPFHTVEPDCIHELLGHMPLLADPSFAQFS 375
LA FRVF TQYVRH+ PF+T EPD HELLGH+PLLA+PSFAQFS
Sbjct: 140 ---------SGLA---FRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEPSFAQFS 187
Query: 376 QEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSSYGELLHAISDKPE 435
QEIGLASLGAS+E ++KL+T Y+FTVEFGLCK++G+++ +GAGLLSS EL HA+S +
Sbjct: 188 QEIGLASLGASEEAVQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAK 247
Query: 436 HRVFDPISTAVQPYQDQEYQPIYFVAESFEDAKEKFRRWVSTM 478
+ FDP T Q +Q +YFV+ESFEDAKEK R + T+
Sbjct: 248 VKPFDPKITCKQECLITTFQDVYFVSESFEDAKEKMREFTKTI 290
>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH
{Chromobacterium violaceum [TaxId: 536]}
Length = 277
Score = 259 bits (664), Expect = 5e-84
Identities = 69/335 (20%), Positives = 122/335 (36%), Gaps = 65/335 (19%)
Query: 167 FADQVYRQRRK-DIAEIAFKYNGDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKD 225
F R+ ++ A + P P Y+ ++ATW ++ L+P C E+ +
Sbjct: 1 FVVPDITTRKNVGLSHDANDF-TLPQPLDRYSAEDHATWATLYQRQCKLLPGRACDEFLE 59
Query: 226 VFAMLQAEGIFTPERIPQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQGLTEEEVILE 285
L+ +R+P +++ L TG+ + GL+ F
Sbjct: 60 GLERLE----VDADRVPDFNKLNEKLMAATGWKIVAVPGLIPDDVFF------------- 102
Query: 286 KAASESKEAESAIQTAALVLRMQHTGFTLRPAAGLLTARDFLASLAFRVFQSTQYVRHTK 345
L R F + ++R
Sbjct: 103 ---------------------------------EHLANRRFPVT---------WWLREPH 120
Query: 346 TPFHTVEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGAS-DEEIEKLSTVYWFTVEFG 404
+ EPD H+L GH+PLL +P FA + + G + A + L+ +YW+TVEFG
Sbjct: 121 QLDYLQEPDVFHDLFGHVPLLINPVFADYLEAYGKGGVKAKALGALPMLARLYWYTVEFG 180
Query: 405 LCKENGEVKAYGAGLLSSYGELLHAI-SDKPEHRVFDPISTAVQPYQDQEYQPIYFVAES 463
L ++ YGAG+LSS E ++ + S P FD + Y+ +Q YFV +S
Sbjct: 181 LINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQKTYFVIDS 240
Query: 464 FEDAKEKFRRWVSTMSRPYEVRFNPYTQRVEVLDC 498
F+ + + + ++ ++
Sbjct: 241 FKQLFDATAPDFAPLYL--QLADAQPWGAGDIAPD 273
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 30.6 bits (69), Expect = 0.10
Identities = 17/84 (20%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 38 KAASESKEAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSKMAGIQFDV 97
+ S ++ + +L+ ++E + +LA++L+ E + H+E+R S++ +++
Sbjct: 2 QETSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEF 61
Query: 98 LVKVDMTRRDLL-NLIRSLRQSSS 120
+D + +L ++I+SLR
Sbjct: 62 FTYLDKRTKPVLGSIIKSLRNDIG 85
>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein
{Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
Length = 359
Score = 29.2 bits (65), Expect = 1.2
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 45 EAESAIQTAALVLRMREGMSSLARILKTIEVFKGTVVHLETRVSK-----------MAGI 93
E + A +T + + EG S+ + F+G+VV++ S M G
Sbjct: 77 EVDIANETKDRRIAVGEGSLSVGDFSHSFS-FEGSVVNMYYYRSDAVRRNIPNPIYMQGR 135
Query: 94 QF-DVLVKVDMTRRDLLNLIRSLRQSSSLGGINLLTENNISVKGPWF 139
QF D+L+KV + DL++ +QS S GG N ++ WF
Sbjct: 136 QFHDILMKVPLDNNDLVDTWEGFQQSISGGGANF----GDWIREFWF 178
>d2a29a1 d.220.1.1 (A:316-451) Potassium-transporting ATPase B
chain, KdpB {Escherichia coli [TaxId: 562]}
Length = 136
Score = 27.7 bits (61), Expect = 1.9
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 268 ARDFLANQGLTEEEVILEKAASESKEAESAIQTAALVLRMQHTGFTLRPAAGL 320
A +F+ QG+ E+ + + A S E+ + ++L Q R L
Sbjct: 4 ASEFIPAQGVDEKTL-ADAAQLASLADETPEGRSIVILAKQRFNLRERDVQSL 55
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
[TaxId: 562]}
Length = 417
Score = 28.4 bits (62), Expect = 2.6
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 369 PSFAQFSQEIGLASLGASDEEIEKL 393
P + + + L LG SD+EI +
Sbjct: 387 PLLGEHTAAV-LQELGYSDDEIAAM 410
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
formigenes [TaxId: 847]}
Length = 427
Score = 28.0 bits (61), Expect = 2.9
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 369 PSFAQFSQEIGLASLGASDEEIEKL 393
P + + E+ L LG D +I++L
Sbjct: 398 PLLGEHTDEV-LKELGLDDAKIKEL 421
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine
CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Length = 402
Score = 28.1 bits (61), Expect = 3.0
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 369 PSFAQFSQEIGLASLGASDEEIEKL 393
PS + I L ++G S+ +I++L
Sbjct: 369 PSHGMDTAAI-LKNIGYSENDIQEL 392
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding
protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 25.5 bits (56), Expect = 3.3
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 242 PQLEEMSNFLKKHTGFTLRPAAGLLTARDFLANQ 275
P+ +++ +LK H +T+ + + D L +
Sbjct: 24 PKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSS 57
>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 27.0 bits (60), Expect = 4.5
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 370 SFAQFSQEIGLASLGASDEEIEKLSTVYWFTVEFGLCKENGEVKAYGAGLLSS 422
S+ S + GL S ++ E+LS++ V N GAG++ +
Sbjct: 150 SYCSLSNQGGLVHPQTSVQDQEELSSL--LQVPLVAGTVNRGSSVVGAGMVVN 200
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 26.1 bits (56), Expect = 5.1
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 8/87 (9%)
Query: 397 YWFTV---EFGLCKENGEVKAYGAGLLSSYGELLHAISDKPEHRVFDPISTAVQPYQDQE 453
YWF + K++ E + + + + + Q ++
Sbjct: 24 YWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLR-DVEKGFMSSKHIFALFNTEQRNVYKD 82
Query: 454 YQPIYFVAESFEDAKEKFRRWVSTMSR 480
Y+ + E+ E+ W ++ R
Sbjct: 83 YRQLELACETQEEVDS----WKASFLR 105
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 95
Score = 25.9 bits (57), Expect = 5.2
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 412 VKAYGAGLLSSYGELLHAISDKPEHRV---FDPISTAVQPYQDQEYQPI 457
+ +GA L+ G + V F + A+ Y EYQ
Sbjct: 29 FERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAA 77
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus
(Peniophora sp. SG) [TaxId: 204723]}
Length = 198
Score = 26.9 bits (59), Expect = 5.7
Identities = 12/60 (20%), Positives = 15/60 (25%), Gaps = 12/60 (20%)
Query: 188 GDPIPHIDYTDSEYATWKAVFNTVLDLMPKHFCQEYKDVFAMLQAEGIFTPERIPQLEEM 247
P P D+ T D+ M G F P +PQ E
Sbjct: 142 NMPQPTFDFRFPAGRT----------SKEAEDMMT--DMCVMSAKIGGFLPGSLPQFMEP 189
>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId:
9606]}
Length = 98
Score = 25.2 bits (55), Expect = 9.4
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 169 DQVYRQRRKDIAEIAFKYNGDPIPHIDYTDSEYATWKAVFN 209
+V + +DI KY + + E + N
Sbjct: 35 QKVKQASMEDIPGRGHKY------RLKFAVEEIIQKQVKVN 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.382
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,917,064
Number of extensions: 91088
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 23
Length of query: 532
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 442
Effective length of database: 1,171,896
Effective search space: 517978032
Effective search space used: 517978032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)