BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14229
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P24785|MLE_DROME Dosage compensation regulator OS=Drosophila melanogaster GN=mle
PE=2 SV=2
Length = 1293
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 13/104 (12%)
Query: 14 EMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTE 73
EM+CLDANDELTPLG++LARLP+EPRLGKM++LG++F C D + I+A+ +S +E+F +
Sbjct: 842 EMRCLDANDELTPLGRLLARLPIEPRLGKMMVLGAVFGCADLMAIMASYSSTFSEVFSLD 901
Query: 74 RRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMF 117
+ +RRL+ Q+A +G++ SD VA+I A M+
Sbjct: 902 -------------IGQRRLANHQKALSGTKCSDHVAMIVASQMW 932
>sp|Q68FK8|DHX9_XENLA ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9
PE=2 SV=1
Length = 1262
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/106 (48%), Positives = 69/106 (65%), Gaps = 16/106 (15%)
Query: 9 ELTPLEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNE 68
E T E+ LD+NDELTPLG+ILA+LP+EPRLGKM+++G IF GDAL ++A A+ E
Sbjct: 835 EHTLRELDALDSNDELTPLGRILAKLPIEPRLGKMMIIGCIFYVGDALCTISA-ATCFPE 893
Query: 69 IFVTERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
F++E RRL Y R FAG+R+SD VA+++ F
Sbjct: 894 PFISE---------------GRRLGYVHRNFAGNRFSDHVALLSVF 924
>sp|Q5R874|DHX9_PONAB ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1
Length = 1269
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 67/106 (63%), Gaps = 16/106 (15%)
Query: 9 ELTPLEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNE 68
E T E+ LDANDELTPLG+ILA+LP+EPR GKM+++G IF GDA+ +AA A+ E
Sbjct: 833 EHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAA-ATCFPE 891
Query: 69 IFVTERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
F+ E +RL Y R FAG+R+SD VA+++ F
Sbjct: 892 PFINE---------------GKRLGYIHRNFAGNRFSDHVALLSVF 922
>sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4
Length = 1270
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 67/106 (63%), Gaps = 16/106 (15%)
Query: 9 ELTPLEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNE 68
E T E+ LDANDELTPLG+ILA+LP+EPR GKM+++G IF GDA+ +AA A+ E
Sbjct: 833 EHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAA-ATCFPE 891
Query: 69 IFVTERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
F+ E +RL Y R FAG+R+SD VA+++ F
Sbjct: 892 PFINE---------------GKRLGYIHRNFAGNRFSDHVALLSVF 922
>sp|Q28141|DHX9_BOVIN ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1
Length = 1287
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 16/106 (15%)
Query: 9 ELTPLEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNE 68
E T E+ LDANDELTPLG+ILA+LP+EPR GKM+++G IF GDA+ ++A A+ E
Sbjct: 830 EHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTISA-ATCFPE 888
Query: 69 IFVTERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
F++E +RL Y R FAG+R+SD VA+++ F
Sbjct: 889 PFISE---------------GKRLGYIHRNFAGNRFSDHVALLSVF 919
>sp|O70133|DHX9_MOUSE ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2
Length = 1380
Score = 92.4 bits (228), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 16/106 (15%)
Query: 9 ELTPLEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNE 68
E T E+ LDANDELTPLG+ILA+LP+EPR GKM+++G IF GDA+ ++A A+ E
Sbjct: 835 EHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISA-ATCFPE 893
Query: 69 IFVTERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
F++E +RL Y R FAG+R+SD VA+++ F
Sbjct: 894 PFISE---------------GKRLGYIHRNFAGNRFSDHVALLSVF 924
>sp|Q22307|DHX9_CAEEL Probable ATP-dependent RNA helicase A OS=Caenorhabditis elegans
GN=rha-1 PE=2 SV=3
Length = 1301
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTER 74
M LD N ELT LGK+LAR+P+EP + K+L+LG+ G + VA++ S E+
Sbjct: 848 MGALDRNLELTSLGKMLARMPIEPVIAKVLILGTALGAGSVMCDVASAMSFPTPFVPREK 907
Query: 75 RLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMF 117
S RLS QR FAG+++SD VA+++ +
Sbjct: 908 HHS-------------RLSGTQRKFAGNKFSDHVAIVSVIQGY 937
>sp|Q8VHK9|DHX36_MOUSE Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36
PE=2 SV=2
Length = 1001
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 13 LEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVT 72
+E+ LD +ELTPLG LARLP+EP +GKM+L G++F C D + +AAS S + +
Sbjct: 668 MELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIP 727
Query: 73 --ERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
+ +++ A+R + A SD + V+NAF
Sbjct: 728 LGKEKIADARR---------------KELAKETRSDHLTVVNAF 756
>sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36
PE=1 SV=2
Length = 1008
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 13 LEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVT 72
+E+ LD +ELTPLG LARLP+EP +GKM+L G++F C D + +AAS S + +
Sbjct: 675 MELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIP 734
Query: 73 --ERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
+ +++ A+R + A SD + V+NAF
Sbjct: 735 LGKEKIADARR---------------KELAKDTRSDHLTVVNAF 763
>sp|Q8NDG6|TDRD9_HUMAN Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9
PE=2 SV=3
Length = 1382
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
ELT LG++LA+LP+ +LGK+++LG +F C D I+AA+ S N F R
Sbjct: 590 ELTFLGRVLAQLPVNQQLGKLIVLGHVFGCLDECLIIAAALSLKN-FFAMPFRQHLDGYR 648
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMF 117
N++ F+GS SD +A++ AF +
Sbjct: 649 NKV------------NFSGSSKSDCIALVEAFKTW 671
>sp|Q3MHU3|TDRD9_RAT Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus
GN=Tdrd9 PE=2 SV=3
Length = 1384
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
ELT LG++LA+LP+ +LGK+++LG +F C D I+AA+ S N F R
Sbjct: 592 ELTFLGRVLAQLPVSQQLGKLIVLGHVFGCLDECLIIAAALSLKN-FFTMPFRQHLDGYR 650
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
N++ F+GS SD +A++ AF
Sbjct: 651 NKVH------------FSGSSRSDCLALVEAF 670
>sp|Q14BI7|TDRD9_MOUSE Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9
PE=1 SV=3
Length = 1383
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
ELT LG++LA+LP+ +LGK+++LG +F C D I+AA+ S N F R
Sbjct: 591 ELTFLGRVLAQLPVSQQLGKLVVLGHVFGCLDECLIIAAALSLKN-FFTMPFRQHLDGYR 649
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
N++ F+GS SD +A++ AF
Sbjct: 650 NKVH------------FSGSSRSDCLALVEAF 669
>sp|B8A4F4|TDRD9_DANRE Putative ATP-dependent RNA helicase TDRD9 OS=Danio rerio GN=tdrd9
PE=2 SV=1
Length = 1342
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
+LT LG++LA+LP++ +LGK+++LG +F C + I+AAS S + + + RS
Sbjct: 547 DLTFLGRVLAQLPVDLQLGKLIVLGHVFGCLEECLIIAASLSLKSFFAMPSLQQLAGYRS 606
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
+LS+AQ SDF+A +NAF
Sbjct: 607 --------KLSFAQNV-----PSDFIAYVNAF 625
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 16/102 (15%)
Query: 14 EMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGD-ALNIVAASASGSNEIFVT 72
++ L +++LTPLG LA LP++ R+GK++LLGSIF C D AL I A+ A S +
Sbjct: 1044 DLGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPW 1103
Query: 73 ERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
+++ Q+ E AFA SD++A++ A+
Sbjct: 1104 DKKEEANQKKLEF------------AFAN---SDYLALLCAY 1130
>sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34
PE=2 SV=2
Length = 1145
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 38/51 (74%)
Query: 14 EMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASAS 64
E LD+++ LTP+G +LA+LP++ +GKML+LGS+F+ + + +AA+ S
Sbjct: 565 EQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALS 615
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 16/102 (15%)
Query: 14 EMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGD-ALNIVAASASGSNEIFVT 72
++ L ++ LTPLG LA LP++ R+GK++L GSIF C D AL I A+ A S +
Sbjct: 1042 DLGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKSPFVSPW 1101
Query: 73 ERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
+++ Q+ E AFA SD++A++ A+
Sbjct: 1102 DKKEEANQKKLEF------------AFAN---SDYLALLQAY 1128
>sp|O60114|YG65_SCHPO Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15C4.05 PE=3 SV=1
Length = 1428
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 14 EMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDAL-NIVAASASGS------ 66
++ L N++LT LGK L++LP++ LGK+L+LG + C DA +IVA GS
Sbjct: 1093 QVGALSENEKLTKLGKFLSQLPVDANLGKILVLGCFYKCVDAASSIVAMLTIGSPFRKSV 1152
Query: 67 -NEIFVTERRLSYAQRS 82
NE + RLS+A+ +
Sbjct: 1153 DNEFSANKARLSFAKEN 1169
>sp|A3KMI0|DHX29_XENLA ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1
Length = 1362
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 17 CLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVT 72
C + +LTPLG+ LA LP+ ++GKML+ G+IF C DA+ +AA+ + + FVT
Sbjct: 1054 CELSQPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDAVATLAATMTEKSP-FVT 1108
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 14/101 (13%)
Query: 18 LDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLS 77
LD+++ LTP+G +LA+LP++ +GKML+LGS+F+ + + +AA+ S V
Sbjct: 567 LDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALS------VQSPFTR 620
Query: 78 YAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMFI 118
AQ S E R L Q D + N FN ++
Sbjct: 621 SAQSSPECAAARRPLESDQ--------GDPFTLFNVFNAWV 653
>sp|B4NBB0|SPNE_DROWI Probable ATP-dependent RNA helicase spindle-E OS=Drosophila
willistoni GN=spn-E PE=3 SV=1
Length = 1432
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 18 LDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASAS 64
++ + +LTP G I+ RLPL+ RL +++LLG +FNC D ++AA S
Sbjct: 567 VELDGDLTPWGSIMTRLPLDIRLSRLVLLGYVFNCLDEAIVMAAGLS 613
>sp|B4JT42|SPNE_DROGR Probable ATP-dependent RNA helicase spindle-E OS=Drosophila
grimshawi GN=spn-E PE=3 SV=1
Length = 1434
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
+LT G I++R PL+ RL ++++LG IFNC D I+AA S ++++ +R QR+
Sbjct: 573 DLTYWGTIMSRFPLDVRLSRLIILGYIFNCLDEAIIIAAGMS-VRSLYLSGQR----QRT 627
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMFI 118
++ F + FA SD V + +++
Sbjct: 628 SDAF-------WMHYIFADGSGSDLVGFWRVYKIYV 656
>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus
GN=Ythdc2 PE=2 SV=1
Length = 1445
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTER 74
+ +DA ++LT LG LA LP+EP LGKM+L + C D + +A + + + FV
Sbjct: 831 IDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLA-YRDPFVLPT 889
Query: 75 RLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
+ S +R ++ F +SD +A++ AF
Sbjct: 890 QAS----------QKRAAMLCRKRFTAGTFSDHMALLRAF 919
>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1
Length = 671
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 15 MKCLDAND---ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFV 71
+K +DA D +LT LG LA LP+EP LGKM+L + C D + +A + + + FV
Sbjct: 54 LKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLA-YRDPFV 112
Query: 72 TERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
+ S +R ++ F +SD +A++ AF
Sbjct: 113 LPTQAS----------QKRAAMLCRKRFTAGAFSDHMALLRAF 145
>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens
GN=YTHDC2 PE=1 SV=2
Length = 1430
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 15 MKCLDAND---ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFV 71
+K +DA D +LT LG LA LP+EP LGKM+L + C D + +A + + + FV
Sbjct: 813 LKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLA-YRDPFV 871
Query: 72 TERRLSYAQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
+ S +R ++ F +SD +A++ AF
Sbjct: 872 LPTQAS----------QKRAAMLCRKRFTAGAFSDHMALLRAF 904
>sp|B4LX81|SPNE_DROVI Probable ATP-dependent RNA helicase spindle-E OS=Drosophila virilis
GN=spn-E PE=3 SV=1
Length = 1433
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 12/96 (12%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
+LT G I++R PL+ RL ++++LG +FNC + + ++AA + +++T +R ++
Sbjct: 573 DLTYWGTIMSRFPLDVRLSRLIILGYVFNCLEEVIVIAAGMT-VRSLYLTGKR----RQV 627
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMFI 118
N+ F + FA SD VA+ + +++
Sbjct: 628 NDAF-------WMHYIFADGSGSDMVAIWRVYRIYL 656
>sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2
Length = 1369
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAA 61
+LTPLG+ LA LP+ ++GKML+ G+IF C D + +AA
Sbjct: 1065 KLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAA 1103
>sp|Q16JS8|SPNE_AEDAE Probable ATP-dependent RNA helicase spindle-E OS=Aedes aegypti
GN=spn-E PE=3 SV=1
Length = 1374
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 19/94 (20%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
+LT +G+I+A+LPL+ R+ K+++LG IF+ + I+AA G NE
Sbjct: 494 DLTYMGRIMAKLPLDLRISKLIILGYIFSVLEESIIIAA---GMNE-------------- 536
Query: 83 NEIFVTERRL-SYAQRAF-AGSRYSDFVAVINAF 114
IF+ + + Y+Q+ + A SD +A++NA+
Sbjct: 537 KNIFLNQNSVRGYSQKMYWADGSGSDGIAILNAY 570
>sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1
Length = 1365
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 17 CLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAA 61
C +LTPLG+ LA LP+ ++GKML+ G+IF C + + +AA
Sbjct: 1058 CEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAA 1102
>sp|B4K5R2|SPNE_DROMO Probable ATP-dependent RNA helicase spindle-E OS=Drosophila
mojavensis GN=spn-E PE=3 SV=1
Length = 1431
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 19 DANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSY 78
+ + +L+ GKI+++ PL+ RL ++++LG +FNC D ++AA + ++VT R
Sbjct: 569 ELDGDLSFWGKIMSKFPLDVRLSRLIILGYVFNCLDEAIVIAAGMT-VRSLYVTGSR--- 624
Query: 79 AQRSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMFI 118
+ NE F + FA SD + + + +++
Sbjct: 625 -GQMNEAF-------WMHYIFADGSGSDMIGIWRVYRIYL 656
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
+LTPLG+ L++LP++PRL +M+L C I+ ++ S + ER + Q S
Sbjct: 485 KLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDP---RERPMDKQQAS 541
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAFN 115
+E RR + SDF+A +N +N
Sbjct: 542 DE---KHRRFH--------DKESDFLAFVNLWN 563
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 8 DELTPLEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSN 67
D L LE K D LTP+G+ +A PLEPR K +LL S F+C + + + + S +
Sbjct: 467 DLLGALEHK--DDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEILTIVSLLSVDS 524
Query: 68 EIFVTERRLSYAQRSNEIFVT 88
++ R Q + F++
Sbjct: 525 VLYNPPARRDEVQSVRKKFIS 545
>sp|Q7QCW2|SPNE_ANOGA Probable ATP-dependent RNA helicase spindle-E OS=Anopheles gambiae
GN=spn-E PE=3 SV=5
Length = 1463
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 15/93 (16%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
++T LG I++ LPL+ L K+++LG +F+ + ++AA + N IF R + +
Sbjct: 578 DITYLGNIMSTLPLDIHLAKLVVLGYVFSVLEEAIVIAAGMNVKN-IFCQLRTIEALR-- 634
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAFN 115
+R FA SD +A++NA+N
Sbjct: 635 ------------VKRHFANGSASDGIAILNAYN 655
>sp|B0XDC4|SPNE_CULQU Probable ATP-dependent RNA helicase spindle-E OS=Culex
quinquefasciatus GN=spn-E PE=3 SV=1
Length = 1396
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 17/93 (18%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
+LT LG+I+++LPL+ R+ K+++LG IF+ + + A + N IF+ + +
Sbjct: 515 DLTYLGRIMSKLPLDIRISKLIMLGYIFSVMEEAVTIGAGMNVKN-IFLNQNSVK----- 568
Query: 83 NEIFVTERRLSYAQRAF-AGSRYSDFVAVINAF 114
+Y+Q+ + A SD +A++NA+
Sbjct: 569 ----------TYSQKMYWADGSGSDAIAILNAY 591
>sp|P0C7L7|YUM14_USTMA Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=UM04112 PE=3 SV=1
Length = 1567
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 24 LTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRSN 83
LT LGK LA+LPL+ RL K+L++G+IF C + + AS +F T + +R
Sbjct: 1228 LTSLGKHLAQLPLDLRLAKLLIMGTIFGCLGPM-LTVASIMSCKPLFNT----PFEKREE 1282
Query: 84 EIFVTERRLSYAQRAFAGSRYSDFVAVINAF 114
++ R S+A AG R SD +A AF
Sbjct: 1283 ---ASKARASFAA---AGCR-SDLLADAAAF 1306
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIF 70
ELT G+ +A LP++P L KM+L ++C + + VAA S +N IF
Sbjct: 811 ELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIF 858
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIF 70
ELT G+ +A LP++P L KM+L ++C + + VAA S +N IF
Sbjct: 807 ELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIF 854
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIF 70
ELT G+ +A LP++P L KM+L ++C + + VAA S +N IF
Sbjct: 810 ELTTSGRKMAELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIF 857
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTER 74
+ CLD LTPLG++ ++ PL+P L ML+ F C + + A S N +
Sbjct: 501 LACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTK 560
Query: 75 RLSYAQRSNEIF 86
A + IF
Sbjct: 561 DKKRADDAKNIF 572
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTER 74
+ LD LT G+I++ PL+P++ KML++ FNC + + V+A S N FV R
Sbjct: 477 LGALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPN-CFVRPR 535
Query: 75 RLSYA 79
A
Sbjct: 536 EAQKA 540
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFV 71
+ CLD N +LTPLG+ + PL+P L ML+ F C + + + A S N +FV
Sbjct: 483 LNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVLSLTALLSVPN-VFV 538
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSN 67
+ LD +LT +G I++ PL+P+L KML++ + +C + + +AA S N
Sbjct: 473 LGALDDEGQLTEIGSIMSEFPLDPQLSKMLIVSAERSCSNEILTIAAMLSAPN 525
>sp|B4PRJ9|SPNE_DROYA Probable ATP-dependent RNA helicase spindle-E OS=Drosophila yakuba
GN=spn-E PE=3 SV=1
Length = 1436
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
++T G I++RLPL+PRL ++++LG +FN + I+AA S ++V E S + R+
Sbjct: 571 DVTYWGTIMSRLPLDPRLSRLIILGYVFNLLEEAIIMAAGLSMRG-LYVHEGSSSRSTRA 629
Query: 83 N-EIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMFI 118
+ F + FA SD VA+ + ++
Sbjct: 630 QFDSF-------WMHYIFADGSGSDLVAIWRVYLTYL 659
>sp|Q5ZI74|DHX30_CHICK Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30
PE=2 SV=1
Length = 1231
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4 LDANDELTPL--EMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAA 61
+ A DE L E+ LD + LT LGK LA++ +PRL K ++L SI+ C L ++ +
Sbjct: 888 IKAVDEAVILLQEIGVLDQREALTTLGKRLAQISTDPRLAKAIVLASIYRCLHPLLVIVS 947
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTER 74
+ LD +LTP+G+ + PL+P L KML++ + C D + + + S F +
Sbjct: 840 LGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSMLSVPAIFFRPKG 899
Query: 75 RLSYAQRSNEIF 86
R A E F
Sbjct: 900 REEEADAKKEKF 911
>sp|B3P3W1|SPNE_DROER Probable ATP-dependent RNA helicase spindle-E OS=Drosophila erecta
GN=spn-E PE=3 SV=1
Length = 1432
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRS 82
++T G I++RLPL+ RL ++++LG +FN + I+AA S ++V E R + S
Sbjct: 571 DITYWGTIMSRLPLDTRLSRLIILGYVFNLLEEAIIIAAGLSMRG-LYVNEGRRTQGADS 629
Query: 83 NEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMFI 118
+ FA SD VA+ + ++
Sbjct: 630 ----------FWMHYIFADGSGSDLVAIWRVYLTYL 655
>sp|Q5R607|DHX30_PONAB Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30
PE=2 SV=1
Length = 1194
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 4 LDANDELTPL--EMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAA 61
+ A DE L E+ LD + LT LG+ LA + EPRL K ++L +IF C L +V +
Sbjct: 845 IKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTEPRLAKAIVLAAIFRCLHPLLVVVS 904
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 24 LTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRSN 83
LT +G+ LA+LP++PRL KM+L F C + I+ ++ S + ER Q S+
Sbjct: 492 LTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDP---RERPQEKQQASD 548
Query: 84 EIFVTERRLSYAQRAFAGSRYSDFVAVIN 112
E R FA + SDF+A +N
Sbjct: 549 E----------KHRRFADKK-SDFLAFLN 566
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 20/106 (18%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTER 74
++ ++ + ELT LG ++A PL+P+L KML+ + NC SNEI
Sbjct: 490 LQAINDDGELTELGSLMAEFPLDPQLAKMLITSTELNC-------------SNEILSITA 536
Query: 75 RLSYAQ---RSNEIFVTERRLSYAQRAFAGSRYSDFVAVINAFNMF 117
LS Q R NE+ TE + A+ A D + ++N ++ F
Sbjct: 537 MLSVPQCWVRPNEM-RTEADEAKARFAHID---GDHLTLLNVYHSF 578
>sp|Q296Q5|SPNE_DROPS Probable ATP-dependent RNA helicase spindle-E OS=Drosophila
pseudoobscura pseudoobscura GN=spn-E PE=3 SV=2
Length = 1433
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 23 ELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRL 76
++T G I+++LPL+ RL ++++LG IFN D I+AA + IFV RL
Sbjct: 573 DITYWGTIMSKLPLDTRLSRLIILGYIFNLLDEAIIIAAGLT-VRGIFVDSTRL 625
>sp|Q9HDY4|YK16_SCHPO Putative ATP-dependent RNA helicase PB1A10.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAPB1A10.06c PE=3 SV=1
Length = 1183
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 15 MKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTER 74
+ +D+ LT LG+ ++ PL PR KML++G C + I SA N++FV+++
Sbjct: 859 LGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYV-IALVSALSINQLFVSKQ 917
Query: 75 RLSY 78
L Y
Sbjct: 918 SLLY 921
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,490,194
Number of Sequences: 539616
Number of extensions: 1374237
Number of successful extensions: 3340
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3209
Number of HSP's gapped (non-prelim): 134
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)