Query psy14229
Match_columns 119
No_of_seqs 127 out of 1235
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:42:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4u_A ATP-dependent RNA helic 100.0 2.5E-28 8.7E-33 184.7 11.2 100 5-118 20-119 (270)
2 2xau_A PRE-mRNA-splicing facto 99.9 3.4E-22 1.1E-26 168.5 12.0 101 5-119 491-591 (773)
3 2va8_A SSO2462, SKI2-type heli 98.6 2.8E-07 9.7E-12 76.2 9.8 70 5-74 473-548 (715)
4 2p6r_A Afuhel308 helicase; pro 98.4 1.3E-06 4.4E-11 72.3 9.8 70 5-74 455-528 (702)
5 2zj8_A DNA helicase, putative 98.4 1.5E-06 5E-11 72.2 9.8 70 5-74 456-533 (720)
6 4f92_B U5 small nuclear ribonu 81.0 3.8 0.00013 37.7 6.9 58 5-62 1388-1450(1724)
7 2xgj_A ATP-dependent RNA helic 79.7 3.5 0.00012 35.8 6.1 58 7-64 821-881 (1010)
8 4f92_B U5 small nuclear ribonu 75.9 6.6 0.00023 36.1 6.9 59 5-63 556-620 (1724)
9 3l9o_A ATP-dependent RNA helic 74.3 2.2 7.6E-05 37.4 3.4 57 7-65 919-977 (1108)
10 4a4z_A Antiviral helicase SKI2 71.0 7.1 0.00024 33.8 5.7 43 7-49 804-848 (997)
11 3u5c_T 40S ribosomal protein S 55.8 7 0.00024 26.4 2.3 28 4-31 100-131 (144)
12 2xzm_T RPS19E; ribosome, trans 50.3 10 0.00035 26.0 2.4 29 4-32 103-140 (155)
13 3iz6_S 40S ribosomal protein S 49.3 6.4 0.00022 26.7 1.3 29 4-32 102-134 (146)
14 1q02_A Sequestosome 1; helical 42.7 8.9 0.00031 21.5 1.0 24 3-26 8-31 (52)
15 3im1_A Protein SNU246, PRE-mRN 31.2 23 0.0008 26.3 2.0 46 16-61 1-49 (328)
16 2k9l_A RNA polymerase sigma fa 23.8 35 0.0012 19.9 1.5 25 13-37 36-61 (76)
17 2db2_A KIAA0890 protein; DSRM 20.7 62 0.0021 20.9 2.3 34 6-39 81-117 (119)
18 2kou_A Dicer-like protein 4; A 20.1 49 0.0017 20.6 1.7 20 7-28 73-92 (102)
No 1
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=184.67 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=92.6
Q ss_pred HHHHHHHhhhcCccCCCCCCCHHHHHhhcCCCchhhHHHHHHhhhhchHHHHHHHHHHhcCCCCccccchhhhhhhhchh
Q psy14229 5 DANDELTPLEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRSNE 84 (119)
Q Consensus 5 ~~~A~~~L~~lgald~~~~lT~~G~~~~~lP~~p~lak~Ll~~~~~~c~~~~~~i~a~ls~~~~~F~~~~~~~~~~~~~~ 84 (119)
+.+|++.|+.|||||++|+||++|+.|+.||++|++||||+.|..++|.+++++|+|+||+ ++||+.|.+
T Consensus 20 l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~-~~~f~~p~~--------- 89 (270)
T 3i4u_A 20 LITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSV-QNVFYRPKD--------- 89 (270)
T ss_dssp HHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTS-SCCBCCCGG---------
T ss_pred HHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCC-CccccCCch---------
Confidence 4689999999999999999999999999999999999999999999999999999999997 899999874
Q ss_pred hhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhh
Q psy14229 85 IFVTERRLSYAQRAFAGSRYSDFVAVINAFNMFI 118 (119)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~sDhl~~l~if~~~~ 118 (119)
.+++++++|++|.+ +.|||++++|+|++|.
T Consensus 90 ---~~~~a~~~~~~f~~-~~sD~ltlLn~~~~~~ 119 (270)
T 3i4u_A 90 ---KQALADQKKAKFHQ-TEGDHLTLLAVYNSWK 119 (270)
T ss_dssp ---GHHHHHHHHHTTCB-TTBHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHccC-CCChHHHHHHHHHHHH
Confidence 35567788999986 7999999999999996
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.87 E-value=3.4e-22 Score=168.54 Aligned_cols=101 Identities=26% Similarity=0.467 Sum_probs=92.8
Q ss_pred HHHHHHHhhhcCccCCCCCCCHHHHHhhcCCCchhhHHHHHHhhhhchHHHHHHHHHHhcCCCCccccchhhhhhhhchh
Q psy14229 5 DANDELTPLEMKCLDANDELTPLGKILARLPLEPRLGKMLLLGSIFNCGDALNIVAASASGSNEIFVTERRLSYAQRSNE 84 (119)
Q Consensus 5 ~~~A~~~L~~lgald~~~~lT~~G~~~~~lP~~p~lak~Ll~~~~~~c~~~~~~i~a~ls~~~~~F~~~~~~~~~~~~~~ 84 (119)
+.+|++.|..+||||++|++|++|+.|+.||++|++||||+.+..++|.+++++|+|+||+ +++|+.|.+
T Consensus 491 i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~-~~~f~~~~~--------- 560 (773)
T 2xau_A 491 MMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSV-PNVFIRPTK--------- 560 (773)
T ss_dssp HHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTS-CCCBCCCTT---------
T ss_pred HHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhccc-CCcccCChH---------
Confidence 5689999999999999999999999999999999999999999999999999999999997 899999874
Q ss_pred hhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHhhC
Q psy14229 85 IFVTERRLSYAQRAFAGSRYSDFVAVINAFNMFIV 119 (119)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~sDhl~~l~if~~~~~ 119 (119)
.+++++.+|.+|.+ +.|||++++|+|++|.+
T Consensus 561 ---~~~~~~~~~~~f~~-~~~D~~~~l~~~~~~~~ 591 (773)
T 2xau_A 561 ---DKKRADDAKNIFAH-PDGDHITLLNVYHAFKS 591 (773)
T ss_dssp ---CHHHHHHHHHTTCC-TTBHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhccC-CCCcHHHHHHHHHHHHH
Confidence 25567788999985 78999999999999964
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.57 E-value=2.8e-07 Score=76.25 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHHHhhhcCccCCCC---CCCHHHHHhhcCCCchhhHHHHHHhhhh---chHHHHHHHHHHhcCCCCccccch
Q psy14229 5 DANDELTPLEMKCLDAND---ELTPLGKILARLPLEPRLGKMLLLGSIF---NCGDALNIVAASASGSNEIFVTER 74 (119)
Q Consensus 5 ~~~A~~~L~~lgald~~~---~lT~~G~~~~~lP~~p~lak~Ll~~~~~---~c~~~~~~i~a~ls~~~~~F~~~~ 74 (119)
++.|++.|..+|+|+.++ .+|++|+.|+.+|++|+.+++++.+... .|..+++.++|..+..+++|+.+.
T Consensus 473 ~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~ 548 (715)
T 2va8_A 473 FDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRN 548 (715)
T ss_dssp HHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHH
T ss_pred HHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChH
Confidence 568999999999998764 8999999999999999999999999887 788899998887663367787665
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.41 E-value=1.3e-06 Score=72.32 Aligned_cols=70 Identities=11% Similarity=-0.026 Sum_probs=61.0
Q ss_pred HHHHHHHhhhcCccCCC--CCCCHHHHHhhcCCCchhhHHHHHHhhhh--chHHHHHHHHHHhcCCCCccccch
Q psy14229 5 DANDELTPLEMKCLDAN--DELTPLGKILARLPLEPRLGKMLLLGSIF--NCGDALNIVAASASGSNEIFVTER 74 (119)
Q Consensus 5 ~~~A~~~L~~lgald~~--~~lT~~G~~~~~lP~~p~lak~Ll~~~~~--~c~~~~~~i~a~ls~~~~~F~~~~ 74 (119)
++.|++.|..+|+|+.+ +.+|++|+.++.+|++|+.+++++.+... .|..+++.++++.+..+++++.+.
T Consensus 455 ~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~ 528 (702)
T 2p6r_A 455 LERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKT 528 (702)
T ss_dssp HHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTT
T ss_pred HHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCc
Confidence 57899999999999876 78999999999999999999999999888 888899998887664356777665
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.40 E-value=1.5e-06 Score=72.18 Aligned_cols=70 Identities=16% Similarity=0.034 Sum_probs=61.6
Q ss_pred HHHHHHHhhhcCccC-CCC---CCCHHHHHhhcCCCchhhHHHHHHhhhh----chHHHHHHHHHHhcCCCCccccch
Q psy14229 5 DANDELTPLEMKCLD-AND---ELTPLGKILARLPLEPRLGKMLLLGSIF----NCGDALNIVAASASGSNEIFVTER 74 (119)
Q Consensus 5 ~~~A~~~L~~lgald-~~~---~lT~~G~~~~~lP~~p~lak~Ll~~~~~----~c~~~~~~i~a~ls~~~~~F~~~~ 74 (119)
++.|++.|...|+|+ .++ .+|++|+.|+.+|++|..+++++.+... .|..+++.|+|+.+..+++|+.+.
T Consensus 456 ~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~ 533 (720)
T 2zj8_A 456 IRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKR 533 (720)
T ss_dssp HHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHH
T ss_pred HHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHH
Confidence 568999999999998 655 7999999999999999999999999887 899999999998774467888775
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=80.96 E-value=3.8 Score=37.68 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcCccC--CCC--CCCHHHHHhhcCCCchhhHHHHHHhhhhchH-HHHHHHHHH
Q psy14229 5 DANDELTPLEMKCLD--AND--ELTPLGKILARLPLEPRLGKMLLLGSIFNCG-DALNIVAAS 62 (119)
Q Consensus 5 ~~~A~~~L~~lgald--~~~--~lT~~G~~~~~lP~~p~lak~Ll~~~~~~c~-~~~~~i~a~ 62 (119)
++.+++.|...|+|. +++ ..|++|+.++.+.++|.-++++..+....+. ..++.+.+.
T Consensus 1388 v~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~ 1450 (1724)
T 4f92_B 1388 VEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISN 1450 (1724)
T ss_dssp HHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcC
Confidence 467899999999994 444 4599999999999999999999887655443 345666553
No 7
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=79.74 E-value=3.5 Score=35.81 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHhhhcCccCCCCCCCHHHHHhhcCCC--chhhHHHHHHhhhhch-HHHHHHHHHHhc
Q psy14229 7 NDELTPLEMKCLDANDELTPLGKILARLPL--EPRLGKMLLLGSIFNC-GDALNIVAASAS 64 (119)
Q Consensus 7 ~A~~~L~~lgald~~~~lT~~G~~~~~lP~--~p~lak~Ll~~~~~~c-~~~~~~i~a~ls 64 (119)
+=++.|..+|.||+++.+|..||..+++-- +.-++-+|..+.--+. ..+++.++|++-
T Consensus 821 ~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v 881 (1010)
T 2xgj_A 821 RRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFA 881 (1010)
T ss_dssp HHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeE
Confidence 446789999999998899999999999965 5667777777654332 234555555543
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=75.88 E-value=6.6 Score=36.11 Aligned_cols=59 Identities=12% Similarity=-0.048 Sum_probs=44.6
Q ss_pred HHHHHHHhhhcCccC--CC-C--CCCHHHHHhhcCCCchhhHHHHHHhhhhchH-HHHHHHHHHh
Q psy14229 5 DANDELTPLEMKCLD--AN-D--ELTPLGKILARLPLEPRLGKMLLLGSIFNCG-DALNIVAASA 63 (119)
Q Consensus 5 ~~~A~~~L~~lgald--~~-~--~lT~~G~~~~~lP~~p~lak~Ll~~~~~~c~-~~~~~i~a~l 63 (119)
+..|+..|...|.|. ++ | ..|++||.++++.++|.-.+.+.......+. .+++.+.+..
T Consensus 556 i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s 620 (1724)
T 4f92_B 556 VHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLS 620 (1724)
T ss_dssp HHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCC
Confidence 457888999999984 32 3 5799999999999999999988877655443 3566666643
No 9
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=74.35 E-value=2.2 Score=37.39 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=39.4
Q ss_pred HHHHHhhhcCccCCCCCCCHHHHHhhcCCC--chhhHHHHHHhhhhchHHHHHHHHHHhcC
Q psy14229 7 NDELTPLEMKCLDANDELTPLGKILARLPL--EPRLGKMLLLGSIFNCGDALNIVAASASG 65 (119)
Q Consensus 7 ~A~~~L~~lgald~~~~lT~~G~~~~~lP~--~p~lak~Ll~~~~~~c~~~~~~i~a~ls~ 65 (119)
+=++.|..+|.||.++.+|..||..+++-- +.-++-+|..+.--+ +++ -.+||+||+
T Consensus 919 ~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~~e~~~~~~~~~-l~~-~~~aa~~s~ 977 (1108)
T 3l9o_A 919 RRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNE-LKP-EQAAALLSC 977 (1108)
T ss_dssp HHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTHHHHHHHHHHHCCCS-SCC-THHHHHTCC
T ss_pred HHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccHHHHHHHHHhCcccC-CCH-HHHHHHHhh
Confidence 446789999999998999999999999953 566677776664322 222 345555654
No 10
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=70.99 E-value=7.1 Score=33.80 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=34.6
Q ss_pred HHHHHhhhcCccCCCCCCCHHHHHhhcCCC--chhhHHHHHHhhh
Q psy14229 7 NDELTPLEMKCLDANDELTPLGKILARLPL--EPRLGKMLLLGSI 49 (119)
Q Consensus 7 ~A~~~L~~lgald~~~~lT~~G~~~~~lP~--~p~lak~Ll~~~~ 49 (119)
+=++.|..+|.||+++.+|..||..+++-- +.-++-+|..+.-
T Consensus 804 ~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~te~~~~~~~ 848 (997)
T 4a4z_A 804 KRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFL 848 (997)
T ss_dssp HHHHHHHHTTSBCTTCCBCHHHHHHTTCCSSCHHHHHHHHHSSGG
T ss_pred HHHHHHHHcCCcCCCCcccHHhHHHhhhcCccHHHHHHHHHhCcc
Confidence 446789999999999999999999999965 5566666666643
No 11
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=55.85 E-value=7 Score=26.45 Aligned_cols=28 Identities=4% Similarity=0.032 Sum_probs=23.1
Q ss_pred hHHHHHHHhhhcCccCCC--C--CCCHHHHHh
Q psy14229 4 LDANDELTPLEMKCLDAN--D--ELTPLGKIL 31 (119)
Q Consensus 4 ~~~~A~~~L~~lgald~~--~--~lT~~G~~~ 31 (119)
++..+++.|..+|.+..+ | .||+.|+..
T Consensus 100 iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~ 131 (144)
T 3u5c_T 100 INRKVLQALEKIGIVEISPKGGRRISENGQRD 131 (144)
T ss_dssp HHHHHHHHHHHTTSEECCSSSSCEECHHHHHH
T ss_pred HHHHHHHHHHHCCCeeecCCCCcEECHhHHHH
Confidence 467899999999999754 2 799999975
No 12
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=50.25 E-value=10 Score=25.98 Aligned_cols=29 Identities=14% Similarity=0.007 Sum_probs=22.8
Q ss_pred hHHHHHHHhhhcCccCC--CC-------CCCHHHHHhh
Q psy14229 4 LDANDELTPLEMKCLDA--ND-------ELTPLGKILA 32 (119)
Q Consensus 4 ~~~~A~~~L~~lgald~--~~-------~lT~~G~~~~ 32 (119)
++..+++.|..+|.+.. +| .||+.|+..-
T Consensus 103 iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~L 140 (155)
T 2xzm_T 103 ILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTEL 140 (155)
T ss_dssp HHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHHH
Confidence 46789999999999964 43 5999998753
No 13
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.29 E-value=6.4 Score=26.73 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=23.3
Q ss_pred hHHHHHHHhhhcCccCCC--C--CCCHHHHHhh
Q psy14229 4 LDANDELTPLEMKCLDAN--D--ELTPLGKILA 32 (119)
Q Consensus 4 ~~~~A~~~L~~lgald~~--~--~lT~~G~~~~ 32 (119)
++..+++.|..+|.+..+ | .||+.|+..-
T Consensus 102 iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~L 134 (146)
T 3iz6_S 102 ISRNILQQLQKMGIIDVDPKGGRLITSQGRRDL 134 (146)
T ss_dssp HHHHHHHHHHHHTSEEEETTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEecCCCCcEECHhHHHHH
Confidence 456899999999999653 3 8999999753
No 14
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=42.72 E-value=8.9 Score=21.46 Aligned_cols=24 Identities=21% Similarity=-0.067 Sum_probs=20.1
Q ss_pred hhHHHHHHHhhhcCccCCCCCCCH
Q psy14229 3 CLDANDELTPLEMKCLDANDELTP 26 (119)
Q Consensus 3 ~~~~~A~~~L~~lgald~~~~lT~ 26 (119)
+-+++|+..+..+|.=|+.|-||.
T Consensus 8 ~rl~~al~qMl~MGF~negGWLt~ 31 (52)
T 1q02_A 8 PRLIESLSQMLSMGFSDEGGWLTR 31 (52)
T ss_dssp HHHHHHHHHHHTTTCCCTTSHHHH
T ss_pred hHHHHHHHHHHHcCCCccccHHHH
Confidence 446789999999999998887775
No 15
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=31.17 E-value=23 Score=26.28 Aligned_cols=46 Identities=9% Similarity=-0.051 Sum_probs=32.0
Q ss_pred CccCCCCC--CCHHHHHhhcCCCchhhHHHHHHhhhhc-hHHHHHHHHH
Q psy14229 16 KCLDANDE--LTPLGKILARLPLEPRLGKMLLLGSIFN-CGDALNIVAA 61 (119)
Q Consensus 16 gald~~~~--lT~~G~~~~~lP~~p~lak~Ll~~~~~~-c~~~~~~i~a 61 (119)
|+++++|. -|++|+.++.+=+++.=.+.+.....-. -...++.+.|
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils 49 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLS 49 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhc
Confidence 67777775 4889999999999999999888765443 2334566655
No 16
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=23.78 E-value=35 Score=19.91 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=16.0
Q ss_pred hhcCccCCCCCCC-HHHHHhhcCCCc
Q psy14229 13 LEMKCLDANDELT-PLGKILARLPLE 37 (119)
Q Consensus 13 ~~lgald~~~~lT-~~G~~~~~lP~~ 37 (119)
+.+|.||++|.|+ ++......++++
T Consensus 36 ~iI~~LD~~GYL~~~l~eia~~l~~~ 61 (76)
T 2k9l_A 36 ELLNYLNEKGFLSKSVEEISDVLRCS 61 (76)
T ss_dssp HHHHHCTTSSTTCCCHHHHHHHHTSC
T ss_pred HHHHhcCCCCCCCCCHHHHHHHcCCC
Confidence 4678899999887 444444444443
No 17
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.70 E-value=62 Score=20.95 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=22.5
Q ss_pred HHHHHHhhhcCccCCCCCC-CH--HHHHhhcCCCchh
Q psy14229 6 ANDELTPLEMKCLDANDEL-TP--LGKILARLPLEPR 39 (119)
Q Consensus 6 ~~A~~~L~~lgald~~~~l-T~--~G~~~~~lP~~p~ 39 (119)
+.|.+.|..||.||.+++. |- --....+||.-|.
T Consensus 81 A~AC~kLK~Lgll~p~n~pl~hakY~~~~~~~~~~~~ 117 (119)
T 2db2_A 81 AAACQLFKGWGLLGPRNELFDAAKYRVLADRFGSGPS 117 (119)
T ss_dssp HHHHHHHHHHTSSCTTCCCCCHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHcCccCCCCCcchHHHHHHHHHhcCCCCC
Confidence 3578899999999998764 42 2223346666553
No 18
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=20.13 E-value=49 Score=20.58 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=15.4
Q ss_pred HHHHHhhhcCccCCCCCCCHHH
Q psy14229 7 NDELTPLEMKCLDANDELTPLG 28 (119)
Q Consensus 7 ~A~~~L~~lgald~~~~lT~~G 28 (119)
+|...|+.+|.||+ +|-|.+
T Consensus 73 ~Ac~~L~~~G~Ldd--~LlP~~ 92 (102)
T 2kou_A 73 KAVHELHNLGVLND--FLLPDS 92 (102)
T ss_dssp HHHHHHHHHCSCTT--TSCCHH
T ss_pred HHHHHHHHCCCCcc--ccCCCC
Confidence 58899999999997 454444
Done!