RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14229
         (119 letters)



>d2fuja1 d.38.1.1 (A:5-122) Hypothetical protein XCC1147
          {Xanthomonas campestris pv. campestris [TaxId: 340]}
          Length = 118

 Score = 23.9 bits (51), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 29 KILARLPLEPRLGKMLLLGSIFN 51
          KILAR+P+  R   M  +G + N
Sbjct: 1  KILARVPISVRWRDMDSMGHVNN 23


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score = 24.0 bits (51), Expect = 6.3
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 4    LDANDELTPLEMKCLDANDELTPLGKILARLPLEPRL---------GKMLLLGSIFNCGD 54
            L+    L+  ++  L    E   + ++  R PL  +          G  L +    + G+
Sbjct: 1159 LEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGE 1218

Query: 55   ALNIVAA 61
            A+ IVAA
Sbjct: 1219 AVGIVAA 1225


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 404,993
Number of extensions: 15986
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)