BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1423
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/57 (85%), Positives = 54/57 (94%)
Query: 47 QEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
Q+QALDLLKALQTLNI+L+ILTKT IGMTVN LRKSSKDDEVI LAKTLIKNWK+F+
Sbjct: 24 QDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFL 80
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + I L++L T +GM+VN LRK S D+EVI LAK+LIK+WKK +
Sbjct: 25 EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL 80
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + + L++L T +GM+VN LRK S D+EV+ LAK+LIK+WKK +
Sbjct: 25 EGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLL 80
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + I L++L T +GM+VN LRK S D+E+I LAK+LIK+WKK +
Sbjct: 24 EGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL 79
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + I L++L T +GM+VN LRK S D+E+I LAK+LIK+WKK +
Sbjct: 24 EGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL 79
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN LRK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLL 77
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E ALDLLK L + + + +L T IG+ VN +RK D EV++LAK LIKNWK+ +
Sbjct: 24 EGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLL 79
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ + E ALDLLK L + + + +L T IG+ VN +RK D EV++LAK LIKNW
Sbjct: 16 KMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KRLL 79
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ + E ALDLLK L + + + +L T IG+ VN +RK + EV+ LAK LI+NW
Sbjct: 16 KMVARKKTEGALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KQLL 79
>sp|B0UYI1|TEAN2_DANRE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Danio rerio GN=tceanc2
PE=3 SV=1
Length = 210
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 47 QEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPY 106
+E ++ LK L +L T IG TVNNLRK S D E+ +LAK + K+W+ FI +
Sbjct: 55 KENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVYKHWRTFIEEH 114
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYV 107
LD L+ L+ ++++++IL T IG VN LRK S D ++ LAKTLI WK+ + +V
Sbjct: 160 LDSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSD-KIRQLAKTLIAEWKELVDQWV 215
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 43 GLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKF 102
G+ EQ LL L + + + I+ KT+IG+ VN +RK DD V AK +IK+WK
Sbjct: 21 GMESVEQCNKLLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWKNV 80
Query: 103 I 103
+
Sbjct: 81 V 81
>sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a
OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1
Length = 580
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVWRM 110
L+ L+ L+++++ ++IL T IG VN LR+ S D ++ LAKTL WK+ + + M
Sbjct: 129 LESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSD-KISKLAKTLFAEWKRLVDQW---M 184
Query: 111 NLPQDV 116
N P+++
Sbjct: 185 NTPEEM 190
>sp|Q90YL3|MED26_DANRE Mediator of RNA polymerase II transcription subunit 26 OS=Danio
rerio GN=med26 PE=2 SV=2
Length = 589
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
LD++ L+ I L +T +G +N++RK +KD+++ AK L++NW+K I P
Sbjct: 32 LDVITNLEKYPITKEALEETRLGKLINDVRKKTKDEDLAKRAKKLLRNWQKLIEP 86
>sp|O95402|MED26_HUMAN Mediator of RNA polymerase II transcription subunit 26 OS=Homo
sapiens GN=MED26 PE=1 SV=2
Length = 600
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
L+++ +L+ I L +T +G +N++RK +K++E+ AK L+++W+K I P
Sbjct: 32 LEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEP 86
>sp|Q7TN02|MED26_MOUSE Mediator of RNA polymerase II transcription subunit 26 OS=Mus
musculus GN=Med26 PE=2 SV=1
Length = 588
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
L+++ +L+ I L +T +G +N++RK +K++E+ AK L+++W+K I P
Sbjct: 32 LEVISSLERYPITKEALEETRLGKLINDVRKKTKNEELAKRAKRLLRSWQKLIEP 86
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 47 QEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPY 106
+E ++LL+ L+ ++I L +T IG VN +RK ++ V LAK L+K WK+ + +
Sbjct: 141 EESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNN-VRRLAKQLVKKWKETVDEW 199
Query: 107 VWRMNLPQDV 116
V + N P D+
Sbjct: 200 V-KFNQPGDL 208
>sp|A5PK23|MED26_BOVIN Mediator of RNA polymerase II transcription subunit 26 OS=Bos
taurus GN=MED26 PE=2 SV=1
Length = 599
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 52 DLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
+++ +L+ I L +T +G +N++RK +K++E+ AK L+++W+K I P
Sbjct: 33 EVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEP 86
>sp|Q90YY5|MED26_XENLA Mediator of RNA polymerase II transcription subunit 26 OS=Xenopus
laevis GN=med26 PE=2 SV=1
Length = 597
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVWRM 110
L+++ +L+ I L +T +G +N++RK + ++++ AK L++NW+K I P
Sbjct: 32 LEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEDLAKRAKKLLRNWQKLIEPVTQNE 91
Query: 111 NL 112
L
Sbjct: 92 QL 93
>sp|Q96MN5|TEAN2_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Homo sapiens GN=TCEANC2
PE=1 SV=1
Length = 208
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 52 DLLKALQTLNIDL---NILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKF 102
+L++ALQ L + +L T IG TVN +RK S D EV +LA+ + WK F
Sbjct: 58 NLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHS-DSEVASLAREVYTEWKTF 110
>sp|Q8R2M0|TEAN2_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Mus musculus GN=Tceanc2
PE=2 SV=2
Length = 207
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 52 DLLKALQTLNIDL---NILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVW 108
+L+ ALQ L + +L T IG VN +R+ S D EV LAK + WK FI ++
Sbjct: 57 NLVAALQELKKKMPSREVLRSTRIGHAVNKMRRHS-DPEVAGLAKEVYTEWKTFIEKHLD 115
Query: 109 RMNL 112
R ++
Sbjct: 116 RPSI 119
>sp|A5PKE4|TEAN2_BOVIN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Bos taurus GN=TCEANC2
PE=2 SV=1
Length = 208
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 52 DLLKALQTLNIDL---NILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVW 108
+L++AL+ L + +L T IG TVN +R+ S D EV LA+ + W+ FI +V
Sbjct: 58 NLVEALRELKKKIPSREVLKSTKIGHTVNKMRQHS-DSEVACLAREVYTEWRTFIEKHVN 116
Query: 109 RMNL 112
R ++
Sbjct: 117 RPSI 120
>sp|Q5XIC7|TEAN2_RAT Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Rattus norvegicus
GN=Tceanc2 PE=2 SV=1
Length = 207
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 52 DLLKALQTLNIDL---NILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVW 108
+L+ ALQ L + +L T IG VN +R+ S D EV LAK + WK FI ++
Sbjct: 57 NLVAALQELKKKIPSREVLRSTRIGHAVNKVRRHS-DPEVAGLAKEVYTEWKTFIENHLD 115
Query: 109 RMNL 112
R ++
Sbjct: 116 RPSI 119
>sp|Q9VCP0|ELOA1_DROME Transcription elongation factor B polypeptide 3 OS=Drosophila
melanogaster GN=EloA PE=1 SV=1
Length = 643
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 47 QEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
+++ L + L L I L +T IG TVN LRK S EV AKTL+ WK +
Sbjct: 25 EQRLLHCITKLFNLPIKFEHLQETGIGKTVNALRKIS--GEVGVAAKTLVTKWKAMV 79
>sp|Q29CV2|MED26_DROPS Mediator of RNA polymerase II transcription subunit 26
OS=Drosophila pseudoobscura pseudoobscura GN=MED26 PE=3
SV=2
Length = 1602
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 44 LVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
+V + L ++ AL+ I L T + +N LR+ +K++ + AK+L+K W++ +
Sbjct: 23 VVNMDAVLSVICALEGTTITKEQLEATRLAKYINQLRRRTKNEHLARRAKSLLKMWREMV 82
>sp|Q6GLQ4|PP1RA_XENLA Serine/threonine-protein phosphatase 1 regulatory subunit 10
OS=Xenopus laevis GN=ppp1r10 PE=2 SV=1
Length = 819
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 53 LLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104
+L LQ L + ++ L + + V L KSS+D+E+ LA L+ +W IR
Sbjct: 94 ILLTLQHLPLTVDHLKQNNTAKLVKQLSKSSEDEELRKLAGILVNDWMAVIR 145
>sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypeptide 3 OS=Homo sapiens
GN=TCEB3 PE=1 SV=2
Length = 798
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 62 IDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
I ++IL +T +G TVN+LRK + V + A+ L+ WKK +
Sbjct: 64 ITVDILAETGVGKTVNSLRKH---EHVGSFARDLVAQWKKLV 102
>sp|B3PI82|GCST_CELJU Aminomethyltransferase OS=Cellvibrio japonicus (strain Ueda107)
GN=gcvT PE=3 SV=1
Length = 371
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 13 WSKTRRPK-RNLIGSAMLTKKKRTSGDNKLTGLVRQEQALDLLKALQTLNI 62
W+ +P+ RN IG A LT +K +KL GLV +E+ +L+A Q ++I
Sbjct: 257 WTIAWQPEARNFIGRAALTAEKSAGQRHKLVGLVLRERG--VLRAEQLVHI 305
>sp|O85066|LEUD_BUCAP 3-isopropylmalate dehydratase small subunit OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=leuD PE=3 SV=1
Length = 207
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 6 SLRDSALWSKTRRPKRNLIGSAMLTKKKRTSGDNKLTGLVRQEQALDLLKALQTLNIDLN 65
S R+ A+WS + +I S+ S +NKL +V + + +D L L I L+
Sbjct: 83 SSREHAVWSLLDYGFKVIIASSFSDIFYSNSFNNKLLLIVLENEDIDYLFDLVNTKIGLS 142
Query: 66 I-LTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
++ H +TV+NL + D+ L L+ NW
Sbjct: 143 FNVSLIHKKITVDNLDIPFQIDDFQRLC--LVNNW 175
>sp|Q24498|RY44_DROME Ryanodine receptor 44F OS=Drosophila melanogaster GN=Rya-r44F PE=1
SV=3
Length = 5127
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 6 SLRDSALWSKTRRPKRNLIGSAMLTKKKRTSGDNKLTGLVRQEQALDLLKALQTLNIDLN 65
SL D+ L + R K + MLTK +R + + L L Q Q LLK L+ L +D++
Sbjct: 2671 SLLDATLHTVYRLSK-----NRMLTKGQREAVSDFLVALTSQMQPAMLLKLLRKLTVDVS 2725
Query: 66 ILTK 69
L++
Sbjct: 2726 KLSE 2729
>sp|O55000|PP1RA_RAT Serine/threonine-protein phosphatase 1 regulatory subunit 10
OS=Rattus norvegicus GN=Ppp1r10 PE=1 SV=1
Length = 872
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 67 LTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104
L + + V L KSS+D+E+ LA L+ +W IR
Sbjct: 108 LKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIR 145
>sp|B4U7T2|QUEA_HYDS0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=queA PE=3
SV=1
Length = 343
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 52 DLLKALQT-LNID---LNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKK 101
+LL+ L+ +NID L++ T +TV N+ + D+E I ++++LIKN KK
Sbjct: 189 ELLEKLKKKVNIDFVTLHVSYGTFKPVTVQNIEEHKVDEEYIEVSESLIKNIKK 242
>sp|Q7YR38|PP1RA_PANTR Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Pan
troglodytes GN=PPP1R10 PE=3 SV=1
Length = 940
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 67 LTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104
L + + V L KSS+D+E+ LA L+ +W IR
Sbjct: 108 LKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIR 145
>sp|Q767K9|PP1RA_PIG Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Sus
scrofa GN=PPP1R10 PE=2 SV=1
Length = 925
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 67 LTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104
L + + V L KSS+D+E+ LA L+ +W IR
Sbjct: 108 LKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIR 145
>sp|Q80W00|PP1RA_MOUSE Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Mus
musculus GN=Ppp1r10 PE=1 SV=1
Length = 888
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 67 LTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104
L + + V L KSS+D+E+ LA L+ +W IR
Sbjct: 108 LKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIR 145
>sp|Q5TM61|PP1RA_MACMU Serine/threonine-protein phosphatase 1 regulatory subunit 10
OS=Macaca mulatta GN=PPP1R10 PE=3 SV=1
Length = 940
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 67 LTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104
L + + V L KSS+D+E+ LA L+ +W IR
Sbjct: 108 LKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIR 145
>sp|Q96QC0|PP1RA_HUMAN Serine/threonine-protein phosphatase 1 regulatory subunit 10
OS=Homo sapiens GN=PPP1R10 PE=1 SV=1
Length = 940
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 67 LTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104
L + + V L KSS+D+E+ LA L+ +W IR
Sbjct: 108 LKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIR 145
>sp|P57513|DCDA_BUCAI Diaminopimelate decarboxylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=lysA PE=3 SV=1
Length = 415
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 30 TKKKRTSGDNKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLR 80
+KK T G+N G+ EQA+ ++K + I L++ HIG VN L
Sbjct: 150 SKKTNTGGENSKHGIWHPEQAIPIIKKYKLKLIGLHM----HIGSGVNYLH 196
>sp|O59725|FCJ1_SCHPO Formation of crista junctions protein C3E7.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC3E7.05c PE=3 SV=1
Length = 550
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIK 97
+D+ L LN D+ + + VN L++++KDDE+ LA +I+
Sbjct: 372 VDVSNTLDDLNKDMRFHKLSEVRQHVNTLKEATKDDELAALASRVIE 418
>sp|B0S2Q1|GLMM_FINM2 Phosphoglucosamine mutase OS=Finegoldia magna (strain ATCC 29328)
GN=glmM PE=3 SV=1
Length = 449
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 35 TSGDNKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNN-LRKSSKDDEVIN 90
T+GD L+ + E A+ + L +N + + + VNN +K KDDEVIN
Sbjct: 336 TTGDGILSAIKLAEIAVKSKQKLSEMNNLMTSFPQVLVNAKVNNEYKKVYKDDEVIN 392
>sp|Q9V4F9|MED26_DROME Mediator of RNA polymerase II transcription subunit 26
OS=Drosophila melanogaster GN=MED26 PE=1 SV=2
Length = 1483
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 44 LVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
+V + L ++ AL+ I L T + +N LR+ +K++ + AK+L+K W++ +
Sbjct: 23 VVNMDAVLCVICALEGTTITKEQLEATRLAKYINQLRRRTKNEHLARRAKSLLKKWREMV 82
>sp|O94494|SIM4_SCHPO Centromere protein sim4 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sim4 PE=1 SV=1
Length = 277
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 5 MSLRDSALWSKTRRPKRNLIGSAMLTKKKRTSGDNK-----LTGLVRQEQALDLLKALQT 59
M R + +RR K+++I SA++ +K+R +++ L G + E A LL+ Q
Sbjct: 136 MGERQKQQAAMSRRGKKSIIHSAIIQEKERYEKESQELFTFLDGFL-DEHAPSLLEGAQA 194
Query: 60 LNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVWRMN 111
+ID N K + N+ K +E + + L+ N PY+ N
Sbjct: 195 -SIDKNRPGKNQPSLNFENISKKDLTEEFKQVIENLMNNSIIPGSPYIEVKN 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,927,249
Number of Sequences: 539616
Number of extensions: 1400591
Number of successful extensions: 4250
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 4204
Number of HSP's gapped (non-prelim): 75
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)