Query psy1423
Match_columns 125
No_of_seqs 104 out of 404
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:43:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjt_A Transcription elongatio 99.9 2.6E-24 9E-29 153.0 5.4 86 24-109 4-92 (103)
2 1pqv_S STP-alpha, transcriptio 99.7 3.8E-17 1.3E-21 133.7 9.1 75 31-108 3-81 (309)
3 2xpp_A IWS1, ECU08_0440; trans 98.1 3.6E-06 1.2E-10 62.7 5.6 59 45-103 79-138 (145)
4 3nfq_A Transcription factor IW 97.9 1.1E-05 3.8E-10 61.6 5.0 59 45-103 94-153 (170)
5 2b4j_C PC4 and SFRS1 interacti 96.6 0.0068 2.3E-07 42.5 6.7 62 43-104 22-84 (98)
6 1z9e_A PC4 and SFRS1 interacti 96.0 0.011 3.7E-07 43.2 5.1 62 43-104 22-84 (127)
7 1nwd_B GAD, glutamate decarbox 48.9 11 0.00038 20.3 2.0 15 93-107 12-26 (28)
8 3zyq_A Hepatocyte growth facto 46.6 30 0.001 26.2 4.9 68 31-104 43-121 (226)
9 1x5b_A Signal transducing adap 44.5 59 0.002 23.4 6.0 68 31-104 50-128 (163)
10 1juq_A ADP-ribosylation factor 37.7 46 0.0016 24.2 4.6 21 84-104 111-131 (171)
11 1dvp_A HRS, hepatocyte growth 34.9 56 0.0019 24.2 4.7 69 30-104 39-118 (220)
12 3g2s_A C-terminal fragment of 30.2 91 0.0031 22.2 5.0 72 30-104 45-129 (149)
13 3ldz_A STAM-1, signal transduc 29.8 1.4E+02 0.0048 20.7 6.4 69 30-105 39-118 (140)
14 3ebb_A Phospholipase A2-activa 29.6 1.6E+02 0.0055 23.1 6.8 65 32-96 232-301 (304)
15 1mhq_A ADP-ribosylation factor 27.6 1.4E+02 0.0048 21.1 5.6 70 31-104 36-119 (148)
16 4ard_A Capsid protein P27; vir 24.8 58 0.002 23.0 3.0 41 60-101 76-116 (116)
17 3tpo_A Importin subunit alpha- 23.9 1.3E+02 0.0045 24.3 5.5 61 38-99 425-495 (529)
18 2v4x_A JSRV capsid, capsid pro 22.6 71 0.0024 23.2 3.2 45 60-105 89-133 (140)
19 1elk_A Target of MYB1; superhe 21.6 1.9E+02 0.0065 20.4 5.4 70 31-104 51-133 (157)
No 1
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.90 E-value=2.6e-24 Score=152.99 Aligned_cols=86 Identities=36% Similarity=0.511 Sum_probs=77.7
Q ss_pred cccccCchHHHHh---hhHhhcCCCCHHHHHHHHHHHhcCcCCHHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHHHH
Q psy1423 24 IGSAMLTKKKRTS---GDNKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWK 100 (125)
Q Consensus 24 ~g~~m~~~~El~~---~lek~~~~~~~~~il~~L~~L~~~~iT~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kWK 100 (125)
-||+|+.++||++ .|+++.+..+++.++++|++|+.++||.|+|++|+||++||+||||++|++|+.+|+.||++||
T Consensus 4 ~~~~M~~e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK 83 (103)
T 1wjt_A 4 GSSGMGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 83 (103)
T ss_dssp SCCSSCSHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 3678998888877 7888777777889999999999999999999999999999999999899999999999999999
Q ss_pred HhhhhhhcC
Q psy1423 101 KFIRPYVWR 109 (125)
Q Consensus 101 k~v~~~~~s 109 (125)
++|..+...
T Consensus 84 ~~v~~~~~~ 92 (103)
T 1wjt_A 84 RLLDSPRTT 92 (103)
T ss_dssp HHTCCSCCC
T ss_pred HHHHHhccc
Confidence 999876543
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.70 E-value=3.8e-17 Score=133.69 Aligned_cols=75 Identities=25% Similarity=0.397 Sum_probs=66.7
Q ss_pred hHHHHh---hhHhhcCCCCHHHHHHHHHHH-hcCcCCHHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHHHHHhhhhh
Q psy1423 31 KKKRTS---GDNKLTGLVRQEQALDLLKAL-QTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPY 106 (125)
Q Consensus 31 ~~El~~---~lek~~~~~~~~~il~~L~~L-~~~~iT~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kWKk~v~~~ 106 (125)
++||.+ .|++ ...+.+.++++|++| +.++||.|+|++|+||++||+|||| ++++|+.+|+.||++||++|..+
T Consensus 3 ~~el~~~~~~L~k--~~~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh-~~~~v~~~Ak~Li~~WK~~v~~~ 79 (309)
T 1pqv_S 3 SKEVLVHVKNLEK--NKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKS-TNVEISKLVKKMISSWKDAINKN 79 (309)
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHh
Confidence 566666 6666 456788999999999 9999999999999999999999999 99999999999999999999765
Q ss_pred hc
Q psy1423 107 VW 108 (125)
Q Consensus 107 ~~ 108 (125)
..
T Consensus 80 ~~ 81 (309)
T 1pqv_S 80 KR 81 (309)
T ss_pred cc
Confidence 43
No 3
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=98.12 E-value=3.6e-06 Score=62.70 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHhcCcCCHHHhhcccchhhhhhhhcCC-CcHHHHHHHHHHHHHHHHhh
Q psy1423 45 VRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSS-KDDEVINLAKTLIKNWKKFI 103 (125)
Q Consensus 45 ~~~~~il~~L~~L~~~~iT~elL~~T~IGk~VnkLRKhs-~d~~I~~lAk~LV~kWKk~v 103 (125)
.+..---.+|+-|..+||+.|.|++++||++|.-+.||. ..++++++|+.||.+|..-+
T Consensus 79 P~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi 138 (145)
T 2xpp_A 79 PNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEV 138 (145)
T ss_dssp CCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHH
Confidence 455566788999999999999999999999999999983 55789999999999998876
No 4
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.92 E-value=1.1e-05 Score=61.60 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHhcCcCCHHHhhcccchhhhhhhhcCC-CcHHHHHHHHHHHHHHHHhh
Q psy1423 45 VRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSS-KDDEVINLAKTLIKNWKKFI 103 (125)
Q Consensus 45 ~~~~~il~~L~~L~~~~iT~elL~~T~IGk~VnkLRKhs-~d~~I~~lAk~LV~kWKk~v 103 (125)
.+..---.+|+-|..+||+.+.|++++||++|.-+.||. ..++++++|..||.+|..-+
T Consensus 94 P~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI 153 (170)
T 3nfq_A 94 PSFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPI 153 (170)
T ss_dssp CCHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHH
Confidence 445555788888999999999999999999999999983 55889999999999996655
No 5
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=96.59 E-value=0.0068 Score=42.46 Aligned_cols=62 Identities=13% Similarity=0.283 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHhcCcCCHHHh-hcccchhhhhhhhcCCCcHHHHHHHHHHHHHHHHhhh
Q psy1423 43 GLVRQEQALDLLKALQTLNIDLNIL-TKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104 (125)
Q Consensus 43 ~~~~~~~il~~L~~L~~~~iT~elL-~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kWKk~v~ 104 (125)
...+...++++|.+|.++++|.-+| +-+.+--++.++|+.-.+..|.+.|..|+.+.|.++.
T Consensus 22 ~~~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~kfK~~f~ 84 (98)
T 2b4j_C 22 DNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (98)
T ss_dssp TSCCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999855 5678888999999987889999999999999999985
No 6
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=95.97 E-value=0.011 Score=43.24 Aligned_cols=62 Identities=13% Similarity=0.283 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHhcCcCCHHHhh-cccchhhhhhhhcCCCcHHHHHHHHHHHHHHHHhhh
Q psy1423 43 GLVRQEQALDLLKALQTLNIDLNILT-KTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104 (125)
Q Consensus 43 ~~~~~~~il~~L~~L~~~~iT~elL~-~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kWKk~v~ 104 (125)
...+...|+++|..|..+++|.-+|+ -+.+--++.+||+.-.+..|.+.|..|+.+.|.++.
T Consensus 22 ~~~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~kFK~lf~ 84 (127)
T 1z9e_A 22 DNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (127)
T ss_dssp GGCCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999998554 678888999999987778999999999999999995
No 7
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=48.85 E-value=11 Score=20.25 Aligned_cols=15 Identities=33% Similarity=0.694 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhhhh
Q psy1423 93 KTLIKNWKKFIRPYV 107 (125)
Q Consensus 93 k~LV~kWKk~v~~~~ 107 (125)
-.+|..||++|++..
T Consensus 12 lemitawkkfveekk 26 (28)
T 1nwd_B 12 LEMITAWKKFVEEKK 26 (28)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhh
Confidence 478999999997654
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.56 E-value=30 Score=26.16 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=44.0
Q ss_pred hHHHHhhhHhhcCCCCHHHHHHHHHHHhcC-----------cCCHHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHHH
Q psy1423 31 KKKRTSGDNKLTGLVRQEQALDLLKALQTL-----------NIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99 (125)
Q Consensus 31 ~~El~~~lek~~~~~~~~~il~~L~~L~~~-----------~iT~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kW 99 (125)
..+..+.|.|-+...++...+-+|.-|+.+ ..+.+.|.. +-+.+ .++ .+..|+..+..||..|
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~--l~~l~---~~~-~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEE--LKDLL---KRQ-VEVNVRNKILYLIQAW 116 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHH--HHHHH---HHC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHH--HHHHh---ccC-CCHHHHHHHHHHHHHH
Confidence 566667666666667777666666655532 234455432 22223 334 6789999999999999
Q ss_pred HHhhh
Q psy1423 100 KKFIR 104 (125)
Q Consensus 100 Kk~v~ 104 (125)
...+.
T Consensus 117 ~~~f~ 121 (226)
T 3zyq_A 117 AHAFR 121 (226)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 98874
No 9
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=44.46 E-value=59 Score=23.38 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=39.5
Q ss_pred hHHHHhhhHhhcCCCCHHHHHHHHHHHhcCc-----------CCHHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHHH
Q psy1423 31 KKKRTSGDNKLTGLVRQEQALDLLKALQTLN-----------IDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99 (125)
Q Consensus 31 ~~El~~~lek~~~~~~~~~il~~L~~L~~~~-----------iT~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kW 99 (125)
..+..+.|.+-+...++...+-+|.-|+.+. .+.+.|.+ +-+.+ .+. .++.|+..+..||..|
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~e--l~~l~---~~~-~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATE--VRAVI---KNK-AHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHH--HHHHH---HTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH--HHHHH---ccC-CCHHHHHHHHHHHHHH
Confidence 3455555555555555665555555555322 22334432 11222 222 4689999999999999
Q ss_pred HHhhh
Q psy1423 100 KKFIR 104 (125)
Q Consensus 100 Kk~v~ 104 (125)
...+.
T Consensus 124 ~~~f~ 128 (163)
T 1x5b_A 124 SEEFQ 128 (163)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99875
No 10
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=37.73 E-value=46 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=18.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhh
Q psy1423 84 KDDEVINLAKTLIKNWKKFIR 104 (125)
Q Consensus 84 ~d~~I~~lAk~LV~kWKk~v~ 104 (125)
.+..|+..+..||..|...+.
T Consensus 111 ~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 111 VSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp SCHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHcC
Confidence 458999999999999998774
No 11
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.91 E-value=56 Score=24.25 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=41.3
Q ss_pred chHHHHhhhHhhcCCCCHHHHHHHHHHHhcCc-----------CCHHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHH
Q psy1423 30 TKKKRTSGDNKLTGLVRQEQALDLLKALQTLN-----------IDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98 (125)
Q Consensus 30 ~~~El~~~lek~~~~~~~~~il~~L~~L~~~~-----------iT~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~k 98 (125)
...|..+.|.+-+...++...+-+|.-|+.+. .+.+.|.+ +-+.+ .+. ++.+|++.+..|+..
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~--l~~l~---~~~-~~~~Vk~kil~li~~ 112 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEM--FSSFL---EST-PHENVRQKMLELVQT 112 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHH--HHHHH---HHC-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHH--HHHHh---cCC-CcHHHHHHHHHHHHH
Confidence 35566666666555566666666665555321 22233322 11122 223 568999999999999
Q ss_pred HHHhhh
Q psy1423 99 WKKFIR 104 (125)
Q Consensus 99 WKk~v~ 104 (125)
|...+.
T Consensus 113 W~~~f~ 118 (220)
T 1dvp_A 113 WAYAFR 118 (220)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 998764
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=30.18 E-value=91 Score=22.20 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=43.0
Q ss_pred chHHHHhhhHhhcCCCCHHHHHHHHHHHhcC-----------cCCHHHhhcccchhhhhhh--hcCCCcHHHHHHHHHHH
Q psy1423 30 TKKKRTSGDNKLTGLVRQEQALDLLKALQTL-----------NIDLNILTKTHIGMTVNNL--RKSSKDDEVINLAKTLI 96 (125)
Q Consensus 30 ~~~El~~~lek~~~~~~~~~il~~L~~L~~~-----------~iT~elL~~T~IGk~VnkL--RKhs~d~~I~~lAk~LV 96 (125)
...+..+.|.+-+...++...+-+|.-|+.+ .-+.+.|.+ +-+.+.+= -.+ .+..|+.....||
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~e--L~kl~~~k~~~~~-~~~~Vk~kil~li 121 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNE--LIKVVSPKYLGSR-TSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHH--HHHHHCTTTTGGG-SCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH--HHHHHcccccCCC-CCHHHHHHHHHHH
Confidence 3556666666666666777666666555532 224444443 22222110 012 5689999999999
Q ss_pred HHHHHhhh
Q psy1423 97 KNWKKFIR 104 (125)
Q Consensus 97 ~kWKk~v~ 104 (125)
..|...+.
T Consensus 122 ~~W~~~f~ 129 (149)
T 3g2s_A 122 YSWTVGLP 129 (149)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHhC
Confidence 99998874
No 13
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=29.83 E-value=1.4e+02 Score=20.70 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=42.2
Q ss_pred chHHHHhhhHhhcCCCCHHHHHHHHHHHhcC-----------cCCHHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHH
Q psy1423 30 TKKKRTSGDNKLTGLVRQEQALDLLKALQTL-----------NIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98 (125)
Q Consensus 30 ~~~El~~~lek~~~~~~~~~il~~L~~L~~~-----------~iT~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~k 98 (125)
...+..+.|.|-+...++...+.+|.-|+.+ .-+.+.|.+ +-+.++ + .++.|+.....|+..
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~e--l~~l~~---~--~~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE--VSNVLN---K--GHPKVCEKLKALMVE 111 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHH--HHHHHH---H--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH--HHHHhc---c--CCHHHHHHHHHHHHH
Confidence 3566667666666656666665555555422 123444443 112222 2 457999999999999
Q ss_pred HHHhhhh
Q psy1423 99 WKKFIRP 105 (125)
Q Consensus 99 WKk~v~~ 105 (125)
|...+..
T Consensus 112 W~~~f~~ 118 (140)
T 3ldz_A 112 WTDEFKN 118 (140)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 9998753
No 14
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=29.57 E-value=1.6e+02 Score=23.14 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=43.7
Q ss_pred HHHHhhhHhhcC-CCCHHHHHHHHHHHhcCc-CCH---HHhhcccchhhhhhhhcCCCcHHHHHHHHHHH
Q psy1423 32 KKRTSGDNKLTG-LVRQEQALDLLKALQTLN-IDL---NILTKTHIGMTVNNLRKSSKDDEVINLAKTLI 96 (125)
Q Consensus 32 ~El~~~lek~~~-~~~~~~il~~L~~L~~~~-iT~---elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV 96 (125)
+.+...+.++.. ..+.|.+..+|-.|..+- ..- ++++.-+++..|+++++.+..+.|+..|+.|+
T Consensus 232 ~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 232 AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345555555543 467788888888877632 233 45566677788888888766777888887765
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=27.61 E-value=1.4e+02 Score=21.05 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=41.9
Q ss_pred hHHHHhhhHhhcCCCCHHHHHHHHHHHhcCc-----------CCHHHhhcccchhhhhhhhcC---CCcHHHHHHHHHHH
Q psy1423 31 KKKRTSGDNKLTGLVRQEQALDLLKALQTLN-----------IDLNILTKTHIGMTVNNLRKS---SKDDEVINLAKTLI 96 (125)
Q Consensus 31 ~~El~~~lek~~~~~~~~~il~~L~~L~~~~-----------iT~elL~~T~IGk~VnkLRKh---s~d~~I~~lAk~LV 96 (125)
..+..+.|.+-+...++...+-+|.-|+.+. -+.+.|.+ +-+.+.+ |+ ..+..|+..+..||
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~e--L~kl~~~--k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNE--LIKVLSP--KYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH--HHHTTCC--STTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH--HHHHHcc--ccCCCCCCHHHHHHHHHHH
Confidence 4566666666666677777766666666321 12333332 1111110 11 14689999999999
Q ss_pred HHHHHhhh
Q psy1423 97 KNWKKFIR 104 (125)
Q Consensus 97 ~kWKk~v~ 104 (125)
..|...+.
T Consensus 112 ~~W~~~f~ 119 (148)
T 1mhq_A 112 FSWTVWFP 119 (148)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHcC
Confidence 99998874
No 16
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=24.84 E-value=58 Score=22.97 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=32.5
Q ss_pred CcCCHHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHHHHH
Q psy1423 60 LNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKK 101 (125)
Q Consensus 60 ~~iT~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kWKk 101 (125)
..+|.|.|..++-=-.+...-.. +......++..-++.|++
T Consensus 76 ~~it~d~LtG~G~ya~~~~Q~~y-~~~ayeQI~~~AikAW~k 116 (116)
T 4ard_A 76 NGWDFDMLTGSGNYSSTDAQMQY-DPGLFAQIQAAATKAWRK 116 (116)
T ss_pred CCccHHHHhCCCcccchHHHHcC-CHHHHHHHHHHHHHHhcC
Confidence 47999999877765555555665 888889999999999985
No 17
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=23.92 E-value=1.3e+02 Score=24.35 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=38.6
Q ss_pred hHhhcCCCCHHHHHHHHHHHhcCc-------CC---HHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHHH
Q psy1423 38 DNKLTGLVRQEQALDLLKALQTLN-------ID---LNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99 (125)
Q Consensus 38 lek~~~~~~~~~il~~L~~L~~~~-------iT---~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kW 99 (125)
|-.++...+.+-+..+|..|..+- -+ ..++.+.+.=..+..|-.| +|++|.+.|-.|+.++
T Consensus 425 L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~-~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 425 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH-ENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGC-SSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 444455566666656666555421 11 1234444444567777778 8999999999999986
No 18
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=22.62 E-value=71 Score=23.19 Aligned_cols=45 Identities=7% Similarity=0.102 Sum_probs=36.6
Q ss_pred CcCCHHHhhcccchhhhhhhhcCCCcHHHHHHHHHHHHHHHHhhhh
Q psy1423 60 LNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105 (125)
Q Consensus 60 ~~iT~elL~~T~IGk~VnkLRKhs~d~~I~~lAk~LV~kWKk~v~~ 105 (125)
.+-|.|.|..++-.-..+...+. +...+...+..-++.||++-..
T Consensus 89 ~~~t~d~L~G~g~~~~~~~Q~~~-~~~~l~qi~~~Al~AWr~l~~~ 133 (140)
T 2v4x_A 89 IQTSYEMLIGEGPYQATDTQLNF-LPGAYAQISNAARQAWKRLPSL 133 (140)
T ss_dssp CSCCHHHHHTCGGGCSGGGSSSS-CTTHHHHHHHHHHHHHHTCC--
T ss_pred CCCCHHHHcCCCCCCChHHHHcC-CHHHHHHHHHHHHHHHHhCCCc
Confidence 45599999999888777777665 7789999999999999998644
No 19
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.63 E-value=1.9e+02 Score=20.41 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=39.6
Q ss_pred hHHHHhhhHhhcC-CCCHHHHHHHHHHHhcC-----------cCCHHHhhcccchhhhhhhh-cCCCcHHHHHHHHHHHH
Q psy1423 31 KKKRTSGDNKLTG-LVRQEQALDLLKALQTL-----------NIDLNILTKTHIGMTVNNLR-KSSKDDEVINLAKTLIK 97 (125)
Q Consensus 31 ~~El~~~lek~~~-~~~~~~il~~L~~L~~~-----------~iT~elL~~T~IGk~VnkLR-Khs~d~~I~~lAk~LV~ 97 (125)
..+..+.|.+-+. ..++...+-+|.-|+.+ ..+.+.|.+.- |.-+. +..++..|++.+..||.
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~L----vk~~~~k~~~~~~Vk~kil~li~ 126 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVL----VRTILPKNNPPTIVHDKVLNLIQ 126 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHT----HHHHSTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHH----HHHhccCCCCcHHHHHHHHHHHH
Confidence 4455555555554 45666555555555521 22334443311 11121 22245789999999999
Q ss_pred HHHHhhh
Q psy1423 98 NWKKFIR 104 (125)
Q Consensus 98 kWKk~v~ 104 (125)
.|...+.
T Consensus 127 ~W~~~f~ 133 (157)
T 1elk_A 127 SWADAFR 133 (157)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9999874
Done!