Your job contains 1 sequence.
>psy1423
MAEPMSLRDSALWSKTRRPKRNLIGSAMLTKKKRTSGDNKLTGLVRQEQALDLLKALQTL
NIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVWRMNLPQDVVKRR
ELGMS
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1423
(125 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 243 1.3e-20 1
UNIPROTKB|Q86VL0 - symbol:TCEA2 "TCEA2 protein" species:9... 158 1.3e-11 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 159 3.0e-11 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 157 3.1e-11 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 158 3.4e-11 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 158 3.4e-11 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 158 3.5e-11 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 156 5.7e-11 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 156 5.7e-11 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 156 5.7e-11 1
UNIPROTKB|E5RIS7 - symbol:TCEA1 "Transcription elongation... 152 5.8e-11 1
UNIPROTKB|E5RJ93 - symbol:TCEA1 "Transcription elongation... 152 5.8e-11 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 156 6.3e-11 1
UNIPROTKB|Q5JRI8 - symbol:TCEA2 "Transcription elongation... 151 7.4e-11 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 158 7.8e-11 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 151 9.0e-11 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 154 9.8e-11 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 152 1.3e-10 1
UNIPROTKB|Q5DR83 - symbol:TCEA3 "Rhabdomyosarcoma antigen... 148 1.5e-10 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 152 1.6e-10 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 152 1.6e-10 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 152 1.6e-10 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 152 1.6e-10 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 152 1.6e-10 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 151 1.7e-10 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 151 2.3e-10 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 148 3.3e-10 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 150 4.1e-10 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 149 5.2e-10 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 148 6.7e-10 1
UNIPROTKB|E2R638 - symbol:TCEA3 "Uncharacterized protein"... 141 8.4e-10 1
UNIPROTKB|F6X6Y7 - symbol:TCEA3 "Uncharacterized protein"... 141 1.9e-09 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 141 2.8e-09 1
UNIPROTKB|J9P902 - symbol:TCEA3 "Uncharacterized protein"... 135 3.6e-09 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 141 3.9e-09 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 134 2.3e-08 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 134 2.3e-08 1
ZFIN|ZDB-GENE-070705-486 - symbol:tceanc2 "transcription ... 117 4.5e-07 1
UNIPROTKB|F1NWL1 - symbol:LOC421892 "Uncharacterized prot... 123 8.7e-07 1
UNIPROTKB|F1LV22 - symbol:F1LV22 "Uncharacterized protein... 115 1.8e-06 1
TAIR|locus:2156814 - symbol:AT5G05140 species:3702 "Arabi... 118 1.9e-06 1
UNIPROTKB|I3LP05 - symbol:TCEA3 "Uncharacterized protein"... 109 2.1e-06 1
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 115 2.2e-06 1
UNIPROTKB|F1S9W1 - symbol:MED26 "Uncharacterized protein"... 113 1.0e-05 1
ZFIN|ZDB-GENE-040426-2005 - symbol:crsp7 "cofactor requir... 112 1.3e-05 1
TAIR|locus:2178173 - symbol:AT5G09850 species:3702 "Arabi... 108 1.6e-05 1
UNIPROTKB|A6QPU3 - symbol:TCEB3 "Uncharacterized protein"... 103 3.3e-05 1
RGD|1309524 - symbol:Med26 "mediator complex subunit 26" ... 105 7.2e-05 1
MGI|MGI:1917875 - symbol:Med26 "mediator complex subunit ... 105 7.4e-05 1
UNIPROTKB|F1PN09 - symbol:MED26 "Uncharacterized protein"... 105 7.5e-05 1
UNIPROTKB|O95402 - symbol:MED26 "Mediator of RNA polymera... 105 7.6e-05 1
UNIPROTKB|Q90YY5 - symbol:med26 "Mediator of RNA polymera... 104 9.6e-05 1
UNIPROTKB|F1PHL5 - symbol:TCEB3 "Uncharacterized protein"... 104 0.00013 1
UNIPROTKB|G3N2S6 - symbol:TCEB3 "Uncharacterized protein"... 103 0.00018 1
UNIPROTKB|A5PK23 - symbol:MED26 "Mediator of RNA polymera... 101 0.00020 1
RGD|3827 - symbol:Tceb3 "transcription elongation factor ... 102 0.00022 1
UNIPROTKB|Q66HK4 - symbol:Tceb3 "Transcription elongation... 102 0.00022 1
UNIPROTKB|F1P1E3 - symbol:TCEB3 "Uncharacterized protein"... 102 0.00022 1
UNIPROTKB|Q14241 - symbol:TCEB3 "Transcription elongation... 101 0.00029 1
UNIPROTKB|Q96MN5 - symbol:TCEANC2 "Transcription elongati... 92 0.00033 1
UNIPROTKB|I3LKH0 - symbol:TCEANC2 "Uncharacterized protei... 92 0.00033 1
MGI|MGI:1913776 - symbol:Tceanc2 "transcription elongatio... 91 0.00042 1
MGI|MGI:1351315 - symbol:Tceb3 "transcription elongation ... 98 0.00058 1
TAIR|locus:2097925 - symbol:AT3G48060 species:3702 "Arabi... 101 0.00065 1
TAIR|locus:2097915 - symbol:SUO "'shuttle' in chinese" sp... 101 0.00065 1
UNIPROTKB|I3LRU2 - symbol:TCEB3 "Uncharacterized protein"... 97 0.00078 1
UNIPROTKB|F5H5K4 - symbol:PPP1R10 "Serine/threonine-prote... 91 0.00095 1
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 49/57 (85%), Positives = 54/57 (94%)
Query: 47 QEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
Q+QALDLLKALQTLNI+L+ILTKT IGMTVN LRKSSKDDEVI LAKTLIKNWK+F+
Sbjct: 24 QDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFL 80
>UNIPROTKB|Q86VL0 [details] [associations]
symbol:TCEA2 "TCEA2 protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 SMART:SM00509 GO:GO:0005634 GO:GO:0005813
EMBL:CH471077 GO:GO:0003677 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803 KO:K03145
CTD:6919 RefSeq:NP_003186.1 UniGene:Hs.505004 UniGene:Hs.736326
DNASU:6919 GeneID:6919 KEGG:hsa:6919 HGNC:HGNC:11614
GenomeRNAi:6919 NextBio:27067 IPI:IPI00384330 EMBL:BC050623
SMR:Q86VL0 MINT:MINT-1379539 STRING:Q86VL0 Ensembl:ENST00000395053
Uniprot:Q86VL0
Length = 242
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + I L++L T +GM+VN LRK S D+EVI LAK+LIK+WKK +
Sbjct: 25 EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL 80
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 159 (61.0 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 39 NKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98
+K+ + A+DLLK L+++ + L++L T IGM+VN LRK S D+EVI LAK+LIK+
Sbjct: 41 DKMVAKKSADGAMDLLKELKSMPMTLDLLQSTRIGMSVNALRKQSSDEEVIALAKSLIKS 100
Query: 99 WKKFI 103
WKK +
Sbjct: 101 WKKLL 105
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 157 (60.3 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + + L++L T +GM+VN LRK S D+EVI LAK+LIK+WKK +
Sbjct: 1 EGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL 56
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 158 (60.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + I L++L T +GM+VN LRK S D+EVI LAK+LIK+WKK +
Sbjct: 25 EGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL 80
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 158 (60.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + + L++L T +GM+VN LRK S D+EV+ LAK+LIK+WKK +
Sbjct: 25 EGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLL 80
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 158 (60.7 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
E A+DLL+ L+ + + L++L T +GM+VN LRK S D+EV+ LAK+LIK+WKK +
Sbjct: 25 EGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLL 80
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 156 (60.0 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 39 NKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98
+K+ E A+DLL+ L+ + I L++L T +GM+VN LRK S D+E+I LAK+LIK+
Sbjct: 15 DKMVTRKNAEGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKS 74
Query: 99 WKKFI 103
WKK +
Sbjct: 75 WKKLL 79
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 156 (60.0 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 39 NKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98
+K+ E A+DLL+ L+ + I L++L T +GM+VN LRK S D+E+I LAK+LIK+
Sbjct: 15 DKMVTRKNAEGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKS 74
Query: 99 WKKFI 103
WKK +
Sbjct: 75 WKKLL 79
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 156 (60.0 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 39 NKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98
+K+ E A+DLL+ L+ + I L++L T +GM+VN LRK S D+E+I LAK+LIK+
Sbjct: 15 DKMVTRKNAEGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKS 74
Query: 99 WKKFI 103
WKK +
Sbjct: 75 WKKLL 79
>UNIPROTKB|E5RIS7 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00975678
ProteinModelPortal:E5RIS7 SMR:E5RIS7 PRIDE:E5RIS7
Ensembl:ENST00000520534 ArrayExpress:E5RIS7 Bgee:E5RIS7
Uniprot:E5RIS7
Length = 111
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>UNIPROTKB|E5RJ93 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00974396
ProteinModelPortal:E5RJ93 SMR:E5RJ93 Ensembl:ENST00000518784
ArrayExpress:E5RJ93 Bgee:E5RJ93 Uniprot:E5RJ93
Length = 90
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 156 (60.0 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S DDEV +LAK+LIK+WKK +
Sbjct: 28 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDDEVTSLAKSLIKSWKKLL 81
>UNIPROTKB|Q5JRI8 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL590548 EMBL:AL355803 UniGene:Hs.505004
UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00384330 SMR:Q5JRI8
STRING:Q5JRI8 Ensembl:ENST00000415602 UCSC:uc010gku.2
Uniprot:Q5JRI8
Length = 82
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 29/53 (54%), Positives = 41/53 (77%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
+DLL+ L+ + I L++L T +GM+VN LRK S D+EVI LAK+LIK+WKK +
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL 53
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 158 (60.7 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 39 NKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98
+K+ + ALDLL+ L+ N+ L +L T IGM+VN +RK D++V+NLAK LIKN
Sbjct: 15 DKMVSRNNMDGALDLLRELKDFNMTLKLLQDTRIGMSVNGIRKHCTDEDVVNLAKILIKN 74
Query: 99 WKKFI 103
WK+ +
Sbjct: 75 WKRLL 79
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 151 (58.2 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 29/53 (54%), Positives = 41/53 (77%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
+DLL+ L+ + I L++L T +GM+VN LRK S D+EVI LAK+LIK+WKK +
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL 53
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 154 (59.3 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN LRK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLL 77
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 152 (58.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 3 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 56
>UNIPROTKB|Q5DR83 [details] [associations]
symbol:TCEA3 "Rhabdomyosarcoma antigen MU-RMS-40.22"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AL357134 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL109936 UniGene:Hs.446354 HGNC:HGNC:11615
ChiTaRS:TCEA3 EMBL:AY540752 IPI:IPI01012612
ProteinModelPortal:Q5DR83 SMR:Q5DR83 STRING:Q5DR83
Ensembl:ENST00000374601 UCSC:uc010ody.1 ArrayExpress:Q5DR83
Bgee:Q5DR83 Uniprot:Q5DR83
Length = 154
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 33/88 (37%), Positives = 49/88 (55%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ E ALDLLK L + + + +L T IG+ VN +RK D EV++LAK LIKNW
Sbjct: 16 KMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 75
Query: 100 KKFIR---PYVWRMNLPQDVVKRRELGM 124
K+ + P ++ K++E G+
Sbjct: 76 KRLLDSPGPPKGEKGEEREKAKKKEKGL 103
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 152 (58.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 152 (58.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 152 (58.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 152 (58.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 152 (58.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 24 ALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 151 (58.2 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 3 ALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 56
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 151 (58.2 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 50 ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
ALDLLK L+ + + L +L T IGM+VN +RK S D+EV +LAK+LIK+WKK +
Sbjct: 28 ALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 81
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 148 (57.2 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
+DLL+ L+ + I L++L T +GM+VN LRK S D+E+I LAK+LIK+WKK +
Sbjct: 1 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL 53
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 150 (57.9 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 33/87 (37%), Positives = 51/87 (58%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ + E ALDLLK L + + + +L T IG+ VN +RK D EV++LAK LIKNW
Sbjct: 16 KMVARKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 75
Query: 100 KKFI-RPYVWRMNLP-QDVVKRRELGM 124
K+ + P + ++ K++E G+
Sbjct: 76 KRLLDSPRTTKGEREAREKAKKKEKGL 102
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 149 (57.5 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ + E ALDLLK L + + + +L T IG+ VN +RK D EV++LAK LIKNW
Sbjct: 16 KMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KRLL 79
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 148 (57.2 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 33/88 (37%), Positives = 49/88 (55%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ E ALDLLK L + + + +L T IG+ VN +RK D EV++LAK LIKNW
Sbjct: 16 KMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 75
Query: 100 KKFIR---PYVWRMNLPQDVVKRRELGM 124
K+ + P ++ K++E G+
Sbjct: 76 KRLLDSPGPPKGEKGEEREKAKKKEKGL 103
>UNIPROTKB|E2R638 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
Ensembl:ENSCAFT00000003983 Uniprot:E2R638
Length = 154
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ E AL LLK L + + + +L T IG+ VN +RK D EV++LAK LIKNW
Sbjct: 16 KMVARKNSEGALGLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KRLL 79
>UNIPROTKB|F6X6Y7 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 Ensembl:ENSCAFT00000003983
EMBL:AAEX03001757 Uniprot:F6X6Y7
Length = 268
Score = 141 (54.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ E AL LLK L + + + +L T IG+ VN +RK D EV++LAK LIKNW
Sbjct: 16 KMVARKNSEGALGLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KRLL 79
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 141 (54.7 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 40 KLTGLVRQEQ---ALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLI 96
KL +V ++ A+DLL+ L+ + + L L T IGM+VN +RK S D+EV LAK+LI
Sbjct: 13 KLDKMVHKKNTDGAIDLLQELKNMKMSLETLQSTRIGMSVNAVRKQSSDEEVQTLAKSLI 72
Query: 97 KNWKKFI 103
K WKK +
Sbjct: 73 KAWKKLL 79
>UNIPROTKB|J9P902 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000017794 EMBL:AAEX03013427 OMA:PLMERSN
Ensembl:ENSCAFT00000037321 Uniprot:J9P902
Length = 152
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
++ + E ALDLLK L + + + +L T IG+ +N + KS D +V++LAK LIKNW
Sbjct: 16 EMVAIKNMEGALDLLKKLNSCQMPIQLLQTTSIGVAINGVCKSCSDKKVMSLAKVLIKNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KQLL 79
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 141 (54.7 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ E AL LLK L + + + +L T IG+ VN +RK D EV++LAK LIKNW
Sbjct: 16 KMVARKNSEGALGLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KRLL 79
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ + E ALDLLK L + + + +L T IG+ VN +RK + EV+ LAK LI+NW
Sbjct: 16 KMVARKKTEGALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KQLL 79
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
K+ + E ALDLLK L + + + +L T IG+ VN +RK + EV+ LAK LI+NW
Sbjct: 16 KMVARKKTEGALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNW 75
Query: 100 KKFI 103
K+ +
Sbjct: 76 KQLL 79
>ZFIN|ZDB-GENE-070705-486 [details] [associations]
symbol:tceanc2 "transcription elongation factor A
(SII) N-terminal and central domain containing 2" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 PROSITE:PS51321 ZFIN:ZDB-GENE-070705-486
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:CR450845 CTD:127428
eggNOG:NOG309610 HOGENOM:HOG000008018 HOVERGEN:HBG058410
OrthoDB:EOG44QT23 IPI:IPI00805701 RefSeq:XP_696087.1
UniGene:Dr.86550 ProteinModelPortal:B0UYI1
Ensembl:ENSDART00000091497 GeneID:567698 KEGG:dre:567698
GeneTree:ENSGT00390000014384 OMA:REVYTEW NextBio:20888801
Bgee:B0UYI1 Uniprot:B0UYI1
Length = 210
Score = 117 (46.2 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 47 QEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPY 106
+E ++ LK L +L T IG TVNNLRK S D E+ +LAK + K+W+ FI +
Sbjct: 55 KENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVYKHWRTFIEEH 114
>UNIPROTKB|F1NWL1 [details] [associations]
symbol:LOC421892 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881
Pfam:PF08711 PROSITE:PS51319 GO:GO:0016021 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10
SUPFAM:SSF47676 GeneTree:ENSGT00390000002428 EMBL:AADN02002726
EMBL:AADN02002727 IPI:IPI00588307 Ensembl:ENSGALT00000031636
OMA:DHLWGKH Uniprot:F1NWL1
Length = 592
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 33 KRTSGDNKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLA 92
K +GD K+ L +AL+LL Q L+I L+ILT+T IG TVN+ RK + N+A
Sbjct: 15 KHGNGDEKIKIL----KALELL---QDLDISLDILTETGIGKTVNSFRKHATAG---NVA 64
Query: 93 KTLIKNWKKFIRP 105
K+L+K WKK + P
Sbjct: 65 KSLVKKWKKLLPP 77
>UNIPROTKB|F1LV22 [details] [associations]
symbol:F1LV22 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 IPI:IPI00199082
Ensembl:ENSRNOT00000010872 Uniprot:F1LV22
Length = 280
Score = 115 (45.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 52 DLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWK 100
D+ K L+ + + L +L T G +VN + K S D+EVI+LAK+LIK+WK
Sbjct: 29 DMPKELKNICMPLELLQSTRFGKSVNAILKQSTDEEVISLAKSLIKSWK 77
>TAIR|locus:2156814 [details] [associations]
symbol:AT5G05140 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009620 "response to fungus" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=RCA] [GO:0010200
"response to chitin" evidence=RCA] InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 GO:GO:0005634 EMBL:CP002688 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 EMBL:AB018111
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:AY062787 EMBL:AY081599
IPI:IPI00527750 RefSeq:NP_196133.3 UniGene:At.21997
ProteinModelPortal:Q9FHK9 SMR:Q9FHK9 PRIDE:Q9FHK9
EnsemblPlants:AT5G05140.1 GeneID:830396 KEGG:ath:AT5G05140
TAIR:At5g05140 eggNOG:NOG250858 HOGENOM:HOG000241439
InParanoid:Q9FHK9 OMA:FDEMDED PhylomeDB:Q9FHK9
ProtClustDB:CLSN2918616 Genevestigator:Q9FHK9 Uniprot:Q9FHK9
Length = 436
Score = 118 (46.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYV 107
LD L+ L+ ++++++IL T IG VN LRK S D ++ LAKTLI WK+ + +V
Sbjct: 160 LDSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSD-KIRQLAKTLIAEWKELVDQWV 215
>UNIPROTKB|I3LP05 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10
SUPFAM:SSF47676 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000032136 OMA:PLMERSN Uniprot:I3LP05
Length = 124
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 62 IDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
+ + +L T IG+ VN +RK D EV++LAK LI+NWK+ +
Sbjct: 1 MSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIRNWKRLL 42
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 115 (45.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 43 GLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKF 102
G+ EQ LL L + + + I+ KT+IG+ VN +RK DD V AK +IK+WK
Sbjct: 21 GMESVEQCNKLLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWKNV 80
Query: 103 I 103
+
Sbjct: 81 V 81
>UNIPROTKB|F1S9W1 [details] [associations]
symbol:MED26 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319
GO:GO:0003677 GO:GO:0016592 GO:GO:0001104 Gene3D:1.20.930.10
SUPFAM:SSF47676 GeneTree:ENSGT00390000000259 OMA:GPGCKAG
EMBL:CU929691 Ensembl:ENSSSCT00000015141 Uniprot:F1S9W1
Length = 599
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 40 KLTGLVRQEQAL-DLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98
K TG +R A+ +++ +L+ I L +T +G +N++RK +K++E+ AK L+++
Sbjct: 20 KRTGQIRNMVAVQEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRS 79
Query: 99 WKKFIRP 105
W+K I P
Sbjct: 80 WQKLIEP 86
>ZFIN|ZDB-GENE-040426-2005 [details] [associations]
symbol:crsp7 "cofactor required for Sp1
transcriptional activation, subunit 7" species:7955 "Danio rerio"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016592 "mediator complex" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003617 InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319
SMART:SM00509 ZFIN:ZDB-GENE-040426-2005 GO:GO:0003677 GO:GO:0016592
GO:GO:0001104 Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:NOG263228
HOGENOM:HOG000113539 HOVERGEN:HBG051124 KO:K15169 OrthoDB:EOG40S0FB
EMBL:AY034615 EMBL:BC045849 IPI:IPI00498361 RefSeq:NP_998224.1
UniGene:Dr.132787 ProteinModelPortal:Q90YL3 STRING:Q90YL3
GeneID:406332 KEGG:dre:406332 CTD:406332 InParanoid:Q90YL3
NextBio:20817954 ArrayExpress:Q90YL3 Uniprot:Q90YL3
Length = 589
Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
LD++ L+ I L +T +G +N++RK +KD+++ AK L++NW+K I P
Sbjct: 32 LDVITNLEKYPITKEALEETRLGKLINDVRKKTKDEDLAKRAKKLLRNWQKLIEP 86
>TAIR|locus:2178173 [details] [associations]
symbol:AT5G09850 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 GO:GO:0005829
GO:GO:0005634 EMBL:CP002688 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AB016893 GO:GO:0003746 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AY058141 EMBL:AY093710 IPI:IPI00530321
RefSeq:NP_568218.1 UniGene:At.23236 ProteinModelPortal:F4KFC7
SMR:F4KFC7 PRIDE:F4KFC7 EnsemblPlants:AT5G09850.1 GeneID:830845
KEGG:ath:AT5G09850 TAIR:At5g09850 eggNOG:NOG237901
HOGENOM:HOG000243987 InParanoid:Q9FIC1 OMA:NIVERLY Uniprot:F4KFC7
Length = 353
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 47 QEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPY 106
+E ++LL+ L+ ++I L +T IG VN +RK ++ V LAK L+K WK+ + +
Sbjct: 141 EESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNN-VRRLAKQLVKKWKETVDEW 199
Query: 107 VWRMNLPQDV 116
V + N P D+
Sbjct: 200 V-KFNQPGDL 208
>UNIPROTKB|A6QPU3 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003617 InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 SMART:SM00509 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 KO:K15076 Gene3D:1.20.930.10 SUPFAM:SSF47676
eggNOG:NOG114994 GeneTree:ENSGT00390000002428 CTD:6924
OrthoDB:EOG495ZRB EMBL:DAAA02006428 EMBL:BC149490 IPI:IPI00698479
RefSeq:NP_001095803.1 UniGene:Bt.74649 Ensembl:ENSBTAT00000037847
GeneID:784844 KEGG:bta:784844 HOGENOM:HOG000213208
InParanoid:A6QPU3 NextBio:20926931 Uniprot:A6QPU3
Length = 264
Score = 103 (41.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYV 107
++ L LK L L I ++IL +T +G TVN+LRK + V N A+ L+ WKK + P V
Sbjct: 24 KKLLKYLKKLSALPITVDILAETGVGKTVNSLRKH---EHVGNFARDLVAQWKKLV-P-V 78
Query: 108 WRMNLPQD 115
R P++
Sbjct: 79 ERTTEPEE 86
>RGD|1309524 [details] [associations]
symbol:Med26 "mediator complex subunit 26" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016592 "mediator complex" evidence=ISO] InterPro:IPR003617
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 SMART:SM00509
RGD:1309524 GO:GO:0003677 GO:GO:0016592 GO:GO:0001104
Gene3D:1.20.930.10 SUPFAM:SSF47676 GeneTree:ENSGT00390000000259
OrthoDB:EOG40S0FB IPI:IPI00358225 Ensembl:ENSRNOT00000016355
UCSC:RGD:1309524 Uniprot:D4A913
Length = 578
Score = 105 (42.0 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
L+++ +L+ I L +T +G +N++RK +K++E+ AK L+++W+K I P
Sbjct: 22 LEVISSLERYPITKEALEETRLGKLINDVRKKTKNEELAKRAKRLLRSWQKLIEP 76
>MGI|MGI:1917875 [details] [associations]
symbol:Med26 "mediator complex subunit 26" species:10090
"Mus musculus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016592 "mediator complex" evidence=ISO;IDA] InterPro:IPR003617
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 SMART:SM00509
MGI:MGI:1917875 GO:GO:0003677 Reactome:REACT_127416
Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104 Gene3D:1.20.930.10
SUPFAM:SSF47676 CTD:9441 eggNOG:NOG263228
GeneTree:ENSGT00390000000259 HOGENOM:HOG000113539
HOVERGEN:HBG051124 KO:K15169 OMA:GPGCKAG OrthoDB:EOG40S0FB
EMBL:AK017726 EMBL:AK083035 EMBL:BC024555 EMBL:BC054737
IPI:IPI00354323 RefSeq:NP_081761.2 UniGene:Mm.235885
UniGene:Mm.440960 ProteinModelPortal:Q7TN02 SMR:Q7TN02
IntAct:Q7TN02 MINT:MINT-218213 STRING:Q7TN02 PhosphoSite:Q7TN02
PaxDb:Q7TN02 PRIDE:Q7TN02 Ensembl:ENSMUST00000058534 GeneID:70625
KEGG:mmu:70625 UCSC:uc009mgg.2 InParanoid:Q7TN02 NextBio:332002
Bgee:Q7TN02 CleanEx:MM_MED26 Genevestigator:Q7TN02 Uniprot:Q7TN02
Length = 588
Score = 105 (42.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
L+++ +L+ I L +T +G +N++RK +K++E+ AK L+++W+K I P
Sbjct: 32 LEVISSLERYPITKEALEETRLGKLINDVRKKTKNEELAKRAKRLLRSWQKLIEP 86
>UNIPROTKB|F1PN09 [details] [associations]
symbol:MED26 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0003677
GO:GO:0016592 GO:GO:0001104 Gene3D:1.20.930.10 SUPFAM:SSF47676
CTD:9441 GeneTree:ENSGT00390000000259 KO:K15169 OMA:GPGCKAG
EMBL:AAEX03012307 RefSeq:XP_541963.3 Ensembl:ENSCAFT00000024790
GeneID:484847 KEGG:cfa:484847 Uniprot:F1PN09
Length = 599
Score = 105 (42.0 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
L+++ +L+ I L +T +G +N++RK +K++E+ AK L+++W+K I P
Sbjct: 32 LEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEP 86
>UNIPROTKB|O95402 [details] [associations]
symbol:MED26 "Mediator of RNA polymerase II transcription
subunit 26" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016592 "mediator complex" evidence=IDA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 Reactome:REACT_111045
GO:GO:0003677 GO:GO:0003713 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 Gene3D:1.20.930.10 SUPFAM:SSF47676 CTD:9441
eggNOG:NOG263228 HOGENOM:HOG000113539 HOVERGEN:HBG051124 KO:K15169
OMA:GPGCKAG OrthoDB:EOG40S0FB ChiTaRS:MED26 EMBL:AF104253
EMBL:BC110430 EMBL:BC127215 IPI:IPI00294682 IPI:IPI00827801
RefSeq:NP_004822.2 UniGene:Hs.715040 ProteinModelPortal:O95402
SMR:O95402 DIP:DIP-31464N IntAct:O95402 STRING:O95402
PhosphoSite:O95402 PaxDb:O95402 PRIDE:O95402
Ensembl:ENST00000263390 GeneID:9441 KEGG:hsa:9441 UCSC:uc002nen.1
GeneCards:GC19M016685 H-InvDB:HIX0202876 HGNC:HGNC:2376
HPA:HPA044195 MIM:605043 neXtProt:NX_O95402 PharmGKB:PA162395623
InParanoid:O95402 PhylomeDB:O95402 GenomeRNAi:9441 NextBio:35354
PMAP-CutDB:O95402 Bgee:O95402 CleanEx:HS_MED26
Genevestigator:O95402 GermOnline:ENSG00000105085 Uniprot:O95402
Length = 600
Score = 105 (42.0 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
L+++ +L+ I L +T +G +N++RK +K++E+ AK L+++W+K I P
Sbjct: 32 LEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEP 86
>UNIPROTKB|Q90YY5 [details] [associations]
symbol:med26 "Mediator of RNA polymerase II transcription
subunit 26" species:8355 "Xenopus laevis" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0016592 "mediator complex"
evidence=ISS] InterPro:IPR003617 InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 SMART:SM00509 GO:GO:0003677 GO:GO:0016592
GO:GO:0001104 Gene3D:1.20.930.10 SUPFAM:SSF47676 CTD:9441
HOVERGEN:HBG051124 KO:K15169 EMBL:AF395742 EMBL:BC077251
RefSeq:NP_001083898.1 UniGene:Xl.12095 HSSP:P07273
ProteinModelPortal:Q90YY5 GeneID:399180 KEGG:xla:399180
Xenbase:XB-GENE-1001807 Uniprot:Q90YY5
Length = 597
Score = 104 (41.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 18/67 (26%), Positives = 39/67 (58%)
Query: 39 NKLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKN 98
+K + + L+++ +L+ I L +T +G +N++RK + ++++ AK L++N
Sbjct: 20 DKQSNIQNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEDLAKRAKKLLRN 79
Query: 99 WKKFIRP 105
W+K I P
Sbjct: 80 WQKLIEP 86
>UNIPROTKB|F1PHL5 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001810 InterPro:IPR010684
InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711 PROSITE:PS50181
PROSITE:PS51319 GO:GO:0016021 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000002428 OMA:WKVHCHR EMBL:AAEX03001748
Ensembl:ENSCAFT00000020984 Uniprot:F1PHL5
Length = 744
Score = 104 (41.7 bits), Expect = 0.00013, P = 0.00013
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 49 QALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
Q L LK L TL I ++IL +T +G TVN+LRK + V + A+ L+ WKK +
Sbjct: 1 QLLKYLKKLSTLPITVDILAETGVGKTVNSLRKH---EHVGSFARDLVAQWKKLV 52
>UNIPROTKB|G3N2S6 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003617 InterPro:IPR010684
InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711 PROSITE:PS51319
SMART:SM00509 GO:GO:0016021 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000002428 OMA:WKVHCHR EMBL:DAAA02006428
Ensembl:ENSBTAT00000063789 Uniprot:G3N2S6
Length = 803
Score = 103 (41.3 bits), Expect = 0.00018, P = 0.00018
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYV 107
++ L LK L L I ++IL +T +G TVN+LRK + V N A+ L+ WKK + P V
Sbjct: 50 KKLLKYLKKLSALPITVDILAETGVGKTVNSLRKH---EHVGNFARDLVAQWKKLV-P-V 104
Query: 108 WRMNLPQD 115
R P++
Sbjct: 105 ERTTEPEE 112
>UNIPROTKB|A5PK23 [details] [associations]
symbol:MED26 "Mediator of RNA polymerase II transcription
subunit 26" species:9913 "Bos taurus" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=ISS] [GO:0016592
"mediator complex" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003617
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 SMART:SM00509
GO:GO:0003677 GO:GO:0016592 GO:GO:0001104 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:BC142325 IPI:IPI00854424 RefSeq:NP_001092358.1
UniGene:Bt.61520 ProteinModelPortal:A5PK23 STRING:A5PK23
PRIDE:A5PK23 Ensembl:ENSBTAT00000006986 GeneID:506331
KEGG:bta:506331 CTD:9441 eggNOG:NOG263228
GeneTree:ENSGT00390000000259 HOGENOM:HOG000113539
HOVERGEN:HBG051124 InParanoid:A5PK23 KO:K15169 OMA:GPGCKAG
OrthoDB:EOG40S0FB NextBio:20867565 Uniprot:A5PK23
Length = 599
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 17/54 (31%), Positives = 35/54 (64%)
Query: 52 DLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRP 105
+++ +L+ I L +T +G +N++RK +K++E+ AK L+++W+K I P
Sbjct: 33 EVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEP 86
>RGD|3827 [details] [associations]
symbol:Tceb3 "transcription elongation factor B (SIII), polypeptide
3" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding" evidence=TAS]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0008023 "transcription elongation factor
complex" evidence=IDA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 RGD:3827 GO:GO:0016021
GO:GO:0006357 GO:GO:0003690 GO:GO:0006368 GO:GO:0008023
HOGENOM:HOG000059565 HOVERGEN:HBG051467 Gene3D:1.20.930.10
SUPFAM:SSF47676 eggNOG:NOG114994 OrthoDB:EOG495ZRB EMBL:L46816
IPI:IPI00326357 PIR:A57244 UniGene:Rn.37427 ProteinModelPortal:Q63187
STRING:Q63187 PhosphoSite:Q63187 PRIDE:Q63187 UCSC:RGD:3827
InParanoid:Q63187 ArrayExpress:Q63187 Genevestigator:Q63187
GermOnline:ENSRNOG00000010902 Uniprot:Q63187
Length = 773
Score = 102 (41.0 bits), Expect = 0.00022, P = 0.00022
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYV 107
++ L LK L L I ++IL +T +G TVN+ RK ++V N A+ L+ WKK + P V
Sbjct: 24 KKLLKYLKKLSVLPITVDILVETGVGKTVNSFRKH---EQVGNFARDLVAQWKKLV-P-V 78
Query: 108 WRMNLPQD 115
R N +D
Sbjct: 79 ERNNEAED 86
>UNIPROTKB|Q66HK4 [details] [associations]
symbol:Tceb3 "Transcription elongation factor B polypeptide
3" species:10116 "Rattus norvegicus" [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 RGD:3827
GO:GO:0016021 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003746 EMBL:CH473968 HOVERGEN:HBG051467
KO:K15076 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000002428 CTD:6924 UniGene:Rn.37427
EMBL:BC081815 IPI:IPI00851142 RefSeq:NP_058799.2 STRING:Q66HK4
Ensembl:ENSRNOT00000064596 GeneID:25562 KEGG:rno:25562
InParanoid:Q66HK4 NextBio:607153 Genevestigator:Q66HK4
Uniprot:Q66HK4
Length = 773
Score = 102 (41.0 bits), Expect = 0.00022, P = 0.00022
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYV 107
++ L LK L L I ++IL +T +G TVN+ RK ++V N A+ L+ WKK + P V
Sbjct: 24 KKLLKYLKKLSVLPITVDILVETGVGKTVNSFRKH---EQVGNFARDLVAQWKKLV-P-V 78
Query: 108 WRMNLPQD 115
R N +D
Sbjct: 79 ERNNEAED 86
>UNIPROTKB|F1P1E3 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 GO:GO:0016021
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.20.930.10 SUPFAM:SSF47676 GeneTree:ENSGT00390000002428
EMBL:AADN02043724 IPI:IPI00586665 Ensembl:ENSGALT00000034951
OMA:IVENIKH Uniprot:F1P1E3
Length = 779
Score = 102 (41.0 bits), Expect = 0.00022, P = 0.00022
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 40 KLTGLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNW 99
+L G ++ L LK L L I ++IL +T +G TVN+LRK + V + AK L+ W
Sbjct: 15 RLAGSADPKKLLKSLKRLSELPITVDILVETGVGKTVNSLRKH---ELVGDFAKNLVARW 71
Query: 100 KKFI 103
KK +
Sbjct: 72 KKLV 75
>UNIPROTKB|Q14241 [details] [associations]
symbol:TCEB3 "Transcription elongation factor B polypeptide
3" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001810
InterPro:IPR003617 InterPro:IPR010684 InterPro:IPR017923
Pfam:PF06881 Pfam:PF08711 PROSITE:PS50181 PROSITE:PS51319
SMART:SM00509 GO:GO:0016021 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0003677 EMBL:CH471134 GO:GO:0006357
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 GO:GO:0008023
Reactome:REACT_1892 HOGENOM:HOG000059565 HOVERGEN:HBG051467
KO:K15076 Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:NOG114994
OMA:WKVHCHR EMBL:AK313079 EMBL:DA333869 EMBL:AL031295 EMBL:L47345
EMBL:BC002883 EMBL:AF116729 IPI:IPI00941732 PIR:JC4636
RefSeq:NP_003189.2 UniGene:Hs.15535 PDB:4HFX PDBsum:4HFX
ProteinModelPortal:Q14241 SMR:Q14241 IntAct:Q14241
MINT:MINT-1462212 STRING:Q14241 PhosphoSite:Q14241 DMDM:294862430
PaxDb:Q14241 PeptideAtlas:Q14241 PRIDE:Q14241 DNASU:6924
Ensembl:ENST00000418390 GeneID:6924 KEGG:hsa:6924 UCSC:uc001bho.3
CTD:6924 GeneCards:GC01P024069 H-InvDB:HIX0000251 HGNC:HGNC:11620
HPA:HPA005910 MIM:600786 neXtProt:NX_Q14241 PharmGKB:PA36379
InParanoid:Q14241 OrthoDB:EOG495ZRB GenomeRNAi:6924 NextBio:27089
Bgee:Q14241 Genevestigator:Q14241 GermOnline:ENSG00000011007
Uniprot:Q14241
Length = 798
Score = 101 (40.6 bits), Expect = 0.00029, P = 0.00029
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
++ L LK L TL I ++IL +T +G TVN+LRK + V + A+ L+ WKK +
Sbjct: 50 KKLLKYLKKLSTLPITVDILAETGVGKTVNSLRKH---EHVGSFARDLVAQWKKLV 102
>UNIPROTKB|Q96MN5 [details] [associations]
symbol:TCEANC2 "Transcription elongation factor A
N-terminal and central domain-containing protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL353898 CTD:127428 eggNOG:NOG309610
HOVERGEN:HBG058410 OrthoDB:EOG44QT23 EMBL:AK056674 EMBL:AK096488
EMBL:BC035374 IPI:IPI00645722 IPI:IPI00845424 RefSeq:NP_694580.1
UniGene:Hs.558618 HSSP:P23881 ProteinModelPortal:Q96MN5 SMR:Q96MN5
PhosphoSite:Q96MN5 DMDM:74752040 PaxDb:Q96MN5 PRIDE:Q96MN5
DNASU:127428 Ensembl:ENST00000234827 Ensembl:ENST00000371331
GeneID:127428 KEGG:hsa:127428 UCSC:uc001cwt.1 GeneCards:GC01P054520
HGNC:HGNC:26494 HPA:HPA046918 neXtProt:NX_Q96MN5
PharmGKB:PA142672531 InParanoid:Q96MN5 PhylomeDB:Q96MN5
GenomeRNAi:127428 NextBio:82091 Bgee:Q96MN5 CleanEx:HS_C1orf83
Genevestigator:Q96MN5 Uniprot:Q96MN5
Length = 208
Score = 92 (37.4 bits), Expect = 0.00033, P = 0.00033
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 52 DLLKALQTLNIDL---NILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKF 102
+L++ALQ L + +L T IG TVN +RK S D EV +LA+ + WK F
Sbjct: 58 NLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHS-DSEVASLAREVYTEWKTF 110
>UNIPROTKB|I3LKH0 [details] [associations]
symbol:TCEANC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 GeneTree:ENSGT00390000014384 OMA:REVYTEW
EMBL:FP475975 RefSeq:XP_003356504.1 Ensembl:ENSSSCT00000029087
GeneID:100621219 KEGG:ssc:100621219 Uniprot:I3LKH0
Length = 208
Score = 92 (37.4 bits), Expect = 0.00033, P = 0.00033
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 47 QEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPY 106
+E +++L+ L+ +L T IG TVN +R+ S D EV LA+ + W+ FI +
Sbjct: 56 KENLVEVLRELKKKIPSREVLKSTRIGHTVNKMRQHS-DSEVACLAREVYTEWRTFIEEH 114
Query: 107 VWRMNL 112
V R ++
Sbjct: 115 VDRPSI 120
>MGI|MGI:1913776 [details] [associations]
symbol:Tceanc2 "transcription elongation factor A (SII)
N-terminal and central domain containing 2" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR003618
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PROSITE:PS51319
PROSITE:PS51321 MGI:MGI:1913776 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10 SUPFAM:SSF47676
eggNOG:NOG309610 HOVERGEN:HBG058410 OrthoDB:EOG44QT23
GeneTree:ENSGT00390000014384 OMA:REVYTEW HSSP:P23881 EMBL:AK008715
EMBL:AK011991 EMBL:BC028321 IPI:IPI00655212 RefSeq:NP_079893.1
UniGene:Mm.246956 ProteinModelPortal:Q8R2M0 SMR:Q8R2M0
PhosphoSite:Q8R2M0 PRIDE:Q8R2M0 DNASU:66526
Ensembl:ENSMUST00000030362 Ensembl:ENSMUST00000057043
Ensembl:ENSMUST00000058585 GeneID:66526 KEGG:mmu:66526
UCSC:uc008tzh.1 CTD:66526 NextBio:321940 Bgee:Q8R2M0
CleanEx:MM_2210012G02RIK Genevestigator:Q8R2M0 Uniprot:Q8R2M0
Length = 207
Score = 91 (37.1 bits), Expect = 0.00042, P = 0.00042
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 52 DLLKALQTLNIDL---NILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVW 108
+L+ ALQ L + +L T IG VN +R+ S D EV LAK + WK FI ++
Sbjct: 57 NLVAALQELKKKMPSREVLRSTRIGHAVNKMRRHS-DPEVAGLAKEVYTEWKTFIEKHLD 115
Query: 109 RMNL 112
R ++
Sbjct: 116 RPSI 119
>MGI|MGI:1351315 [details] [associations]
symbol:Tceb3 "transcription elongation factor B (SIII),
polypeptide 3" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=ISO]
[GO:0008023 "transcription elongation factor complex" evidence=ISO]
[GO:0016021 "integral to membrane" evidence=IEA] InterPro:IPR001810
InterPro:IPR003617 InterPro:IPR010684 InterPro:IPR017923
Pfam:PF06881 Pfam:PF08711 PROSITE:PS50181 PROSITE:PS51319
SMART:SM00509 MGI:MGI:1351315 GO:GO:0016021 EMBL:CH466552
GO:GO:0003677 GO:GO:0006357 GO:GO:0006368 GO:GO:0008023
EMBL:AL672076 HOGENOM:HOG000059565 HOVERGEN:HBG051467 KO:K15076
Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:NOG114994
GeneTree:ENSGT00390000002428 OMA:WKVHCHR CTD:6924 OrthoDB:EOG495ZRB
EMBL:AB025015 EMBL:AK036592 EMBL:AK145994 EMBL:AK147088
EMBL:BC049885 IPI:IPI00317167 RefSeq:NP_038764.2 UniGene:Mm.27663
ProteinModelPortal:Q8CB77 SMR:Q8CB77 IntAct:Q8CB77 STRING:Q8CB77
PhosphoSite:Q8CB77 PaxDb:Q8CB77 PRIDE:Q8CB77
Ensembl:ENSMUST00000030427 GeneID:27224 KEGG:mmu:27224
InParanoid:Q3UI38 NextBio:305140 Bgee:Q8CB77 Genevestigator:Q8CB77
GermOnline:ENSMUSG00000028668 Uniprot:Q8CB77
Length = 773
Score = 98 (39.6 bits), Expect = 0.00058, P = 0.00058
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
++ L LK L L I ++IL +T +G TVN+ RK ++V N A+ L+ WKK +
Sbjct: 24 KKLLKYLKKLSILPITVDILVETGVGKTVNSFRKH---EQVGNFARDLVAQWKKLV 76
>TAIR|locus:2097925 [details] [associations]
symbol:AT3G48060 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001025 InterPro:IPR003617
InterPro:IPR017923 Pfam:PF01426 Pfam:PF08711 PROSITE:PS51038
PROSITE:PS51319 SMART:SM00439 SMART:SM00509 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0006351
EMBL:AL049658 Gene3D:1.20.930.10 SUPFAM:SSF47676 UniGene:At.19774
IPI:IPI00534352 PIR:T06677 RefSeq:NP_190389.1 UniGene:At.48751
ProteinModelPortal:Q9SU69 SMR:Q9SU69 STRING:Q9SU69 PaxDb:Q9SU69
PRIDE:Q9SU69 EnsemblPlants:AT3G48060.1 GeneID:823961
KEGG:ath:AT3G48060 TAIR:At3g48060 eggNOG:NOG298939
HOGENOM:HOG000083288 InParanoid:Q9SU69 OMA:TERVECL PhylomeDB:Q9SU69
ProtClustDB:CLSN2684022 Genevestigator:Q9SU69 Uniprot:Q9SU69
Length = 1611
Score = 101 (40.6 bits), Expect = 0.00065, P = 0.00065
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKK 101
L LL+AL L ++LN L +IG +VN+LR S K+ E+ A++L+ WKK
Sbjct: 358 LVLLRALDKLPVNLNALQTCNIGKSVNHLR-SHKNSEIGKKARSLVDTWKK 407
>TAIR|locus:2097915 [details] [associations]
symbol:SUO "'shuttle' in chinese" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0035278 "negative regulation of translation
involved in gene silencing by miRNA" evidence=IDA]
InterPro:IPR001025 InterPro:IPR003617 InterPro:IPR017923
Pfam:PF01426 Pfam:PF08711 PROSITE:PS51038 PROSITE:PS51319
SMART:SM00439 SMART:SM00509 GO:GO:0005634 EMBL:CP002686
GO:GO:0003677 GO:GO:0006351 GO:GO:0000932 GO:GO:0035278
Gene3D:1.20.930.10 SUPFAM:SSF47676 IPI:IPI00524563
RefSeq:NP_190388.2 RefSeq:NP_850669.2 UniGene:At.19774 PRIDE:F4JCS8
EnsemblPlants:AT3G48050.1 EnsemblPlants:AT3G48050.2 GeneID:823960
KEGG:ath:AT3G48050 OMA:DVNTESW ArrayExpress:F4JCS8 Uniprot:F4JCS8
Length = 1613
Score = 101 (40.6 bits), Expect = 0.00065, P = 0.00065
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 51 LDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKK 101
L LL+AL L ++LN L +IG +VN+LR S K+ E+ A++L+ WKK
Sbjct: 358 LVLLRALDKLPVNLNALQTCNIGKSVNHLR-SHKNSEIGKKARSLVDTWKK 407
>UNIPROTKB|I3LRU2 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 GO:GO:0016021
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 KO:K15076
Gene3D:1.20.930.10 SUPFAM:SSF47676 GeneTree:ENSGT00390000002428
OMA:WKVHCHR CTD:6924 EMBL:FP475977 RefSeq:XP_003356245.1
Ensembl:ENSSSCT00000027579 GeneID:100620801 KEGG:ssc:100620801
Uniprot:I3LRU2
Length = 805
Score = 97 (39.2 bits), Expect = 0.00078, P = 0.00078
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 48 EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
++ L LK L L I ++IL +T +G TVN+LRK + V + A+ L+ WKK +
Sbjct: 50 KKLLKYLKKLSALPITIDILAETGVGKTVNSLRKH---EHVGSFARDLVAQWKKLV 102
>UNIPROTKB|F5H5K4 [details] [associations]
symbol:PPP1R10 "Serine/threonine-protein phosphatase 1
regulatory subunit 10" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003617 InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319
SMART:SM00509 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
EMBL:AL662825 EMBL:BX119957 EMBL:CR753328 EMBL:CR759778
EMBL:BX908728 Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:BX248507
HGNC:HGNC:9284 ChiTaRS:PPP1R10 IPI:IPI01014304 SMR:F5H5K4
Ensembl:ENST00000547333 Ensembl:ENST00000548899
Ensembl:ENST00000549281 Ensembl:ENST00000549865
Ensembl:ENST00000551493 Ensembl:ENST00000552146 Uniprot:F5H5K4
Length = 312
Score = 91 (37.1 bits), Expect = 0.00095, P = 0.00095
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 53 LLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYVWRMNL 112
+L LQ L + ++ L + + V L KSS+D+E+ LA L+ +W IR
Sbjct: 94 ILLTLQHLPLTVDHLKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIRSQSSTQPA 153
Query: 113 PQDVVKRRELGMS 125
+D KR++ G S
Sbjct: 154 EKDKKKRKDEGKS 166
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 125 125 0.00091 102 3 11 22 0.38 31
29 0.39 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 67
No. of states in DFA: 548 (58 KB)
Total size of DFA: 121 KB (2079 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.31u 0.11s 13.42t Elapsed: 00:00:01
Total cpu time: 13.32u 0.11s 13.43t Elapsed: 00:00:01
Start: Thu Aug 15 15:02:12 2013 End: Thu Aug 15 15:02:13 2013