RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1423
         (125 letters)



>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein
           3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 103

 Score = 64.5 bits (157), Expect = 2e-15
 Identities = 28/57 (49%), Positives = 38/57 (66%)

Query: 48  EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIR 104
           E ALDLLK L +  + + +L  T IG+ VN +RK   D EV++LAK LIKNWK+ + 
Sbjct: 31  EGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLD 87


>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS
           N-domain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 77

 Score = 52.8 bits (127), Expect = 4e-11
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 48  EQALDLLKALQT-LNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFI 103
              L++L  L         +L +T +G+ VN  +K S + E+  L K +I +WK  I
Sbjct: 21  AAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKK-STNVEISKLVKKMISSWKDAI 76


>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein,
           PSIP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 25.1 bits (55), Expect = 1.2
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 48  EQALDLLKALQTLNIDLNILTK-THIGMTVNNLRKSSKDDEVINLAKTLIKNWKK 101
            + ++ L  L +L + +    K T +  T+  +R+      ++  +  L   +K 
Sbjct: 26  NRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKN 80


>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 460

 Score = 24.9 bits (52), Expect = 3.2
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 37  GDNKLT--GLVRQEQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKT 94
            D  ++          L    +L+ L++  N L    I   V ++R+     E + L   
Sbjct: 377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 436

Query: 95  LI 96
             
Sbjct: 437 YW 438


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
            [TaxId: 274]}
          Length = 1119

 Score = 24.3 bits (52), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 53   LLKALQTLNIDLNILTKT 70
            L+K LQ L +D+  L + 
Sbjct: 1088 LVKELQALALDVQTLDEK 1105


>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 321

 Score = 23.6 bits (51), Expect = 8.4
 Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 4/60 (6%)

Query: 48  EQALDLLKALQTLNIDLNILTKTHIGMTVNNLRKSSKDDEVINLAKTLIKNWKKFIRPYV 107
            ++ D     +     L           V   R+     EV++    ++      I   +
Sbjct: 58  SRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREP----EVLSTMAIIVNKLGGHITAEI 113


>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
           carotovorum [TaxId: 554]}
          Length = 296

 Score = 23.4 bits (49), Expect = 9.8
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 97  KNWKKFIRPYVWRMN-LPQDVVKRRELGMS 125
              K  +R Y   +  LP+D+V R+++G+ 
Sbjct: 213 NEVKNILREYADSLQLLPKDIVWRKKIGIH 242


>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
           {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
          Length = 313

 Score = 23.6 bits (49), Expect = 10.0
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 38  DNKLTGLVRQEQALDLLKALQTLNIDLNILT 68
           +N++ G + Q   L  LK L +LN+  N L 
Sbjct: 253 NNRIYGTLPQG--LTQLKFLHSLNVSFNNLC 281


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,733
Number of extensions: 17544
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 14
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.9 bits)