BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14230
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus
          Horikoshii Ot3
 pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus
          Horikoshii Ot3
          Length = 117

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 33 LSAQLNENESVQKELD-LMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAEL 86
          + A LNE +   +E++ L  D ++YK +G ++VK   E+A Q +K++I+ +   L
Sbjct: 32 VQADLNEAKKALEEIETLPDDAQIYKTVGTLIVKTTKEKAVQELKEKIETLEVRL 86


>pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin (gimc)
          Length = 107

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 29 QRQLLSAQLNENESVQKELD-LMKDGEVYKLIGPILVK 65
          Q+Q +  Q+NE +   +EL     D EVYK  G IL++
Sbjct: 23 QKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIR 60


>pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin (gimc)
          Length = 109

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 29 QRQLLSAQLNENESVQKELD-LMKDGEVYKLIGPILVK 65
          Q+Q +  Q+NE +   +EL     D EVYK  G IL++
Sbjct: 22 QKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIR 59


>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
           Mutans Ua159
          Length = 425

 Score = 26.2 bits (56), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 42  SVQKELDLMKDGEVY--KLIG--PILVKQEMEEAKQNVKKRIDYISAELKRHDDT 92
           + +  +D  K G VY   L+G  P     EM+EA  +    ++Y    +++H DT
Sbjct: 111 ATESSVDQSKAGAVYVHSLLGIQPFARSFEMKEACYSATAALNYAKLHVEKHPDT 165


>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a
          Length = 143

 Score = 26.2 bits (56), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 38 NENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88
          NENES ++EL   +DG+ Y  +  +L    +E    +  KR+ +I  +L++
Sbjct: 16 NENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRK 66


>pdb|2LXL|A Chain A, Lip5(mit)2
          Length = 183

 Score = 25.4 bits (54), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 21/30 (70%)

Query: 18 QCQKEYQKVLNQRQLLSAQLNENESVQKEL 47
          +C+K   K+++Q + L  QL +NE++ +E+
Sbjct: 55 ECRKFLSKLMDQLEALKKQLGDNEAITQEI 84


>pdb|2LXM|A Chain A, Lip5-chmp5
          Length = 168

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 21/30 (70%)

Query: 18 QCQKEYQKVLNQRQLLSAQLNENESVQKEL 47
          +C+K   K+++Q + L  QL +NE++ +E+
Sbjct: 55 ECRKFLSKLMDQLEALKKQLGDNEAITQEI 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.128    0.333 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,737,925
Number of Sequences: 62578
Number of extensions: 93204
Number of successful extensions: 336
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 34
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)