BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14230
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03958|PFD6_MOUSE Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1
Length = 127
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGE--VYKL 58
M E +QKKL+ E+ ++Q QK+ K ++ RQ L AQL EN V++EL L+ DG V+KL
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALL-DGSNVVFKL 59
Query: 59 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97
+GP+LVKQE+ EA+ V KR+DYI+AE+KR++ + L+
Sbjct: 60 LGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLE 98
>sp|O15212|PFD6_HUMAN Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1
Length = 129
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGE--VYKL 58
M E +QKKL+ E+ ++Q QK+ K ++ RQ L AQL EN V++EL L+ DG V+KL
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALL-DGSNVVFKL 59
Query: 59 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97
+GP+LVKQE+ EA+ V KR+DYI+AE+KR++ + L+
Sbjct: 60 LGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLE 98
>sp|Q5TJE6|PFD6_CANFA Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1
Length = 129
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGE--VYKL 58
M E +QKKL+ E+ ++Q QK+ K ++ RQ L AQL EN V++EL L+ DG V+KL
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALL-DGSNVVFKL 59
Query: 59 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97
+GP+LVKQE+ EA+ V KR+DYI+AE+KR++ + L+
Sbjct: 60 LGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLE 98
>sp|Q17Q89|PFD6_BOVIN Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1
Length = 129
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGE--VYKL 58
M E +QKKL+ E+ ++Q QK+ K ++ RQ L AQL EN V++EL L+ DG V+KL
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALL-DGSNVVFKL 59
Query: 59 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97
+GP+LVKQE+ EA+ V KR+DYI+AE+KR++ + L+
Sbjct: 60 LGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLE 98
>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770
PE=2 SV=1
Length = 125
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVK 65
KK++ E+ ++ QK K++ QR +L +QLNEN+ V EL+L+ D +VYKL GP+LVK
Sbjct: 10 KKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVYKLFGPVLVK 69
Query: 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97
QE+EE++QNV KRI+YIS ELK D + ++
Sbjct: 70 QELEESRQNVGKRIEYISKELKSSTDALENME 101
>sp|A8Y197|PFD6_CAEBR Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6
PE=3 SV=1
Length = 128
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Query: 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM-KDGEVYKLIGPILVKQ 66
K E E++ K +K+ +K + RQ + +L E+++V+ ELDLM D +VYKL+GP+LV+Q
Sbjct: 6 KFEEEISKLKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQ 65
Query: 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 99
++EEA+ V+KR+++I +E+KR + +I ++ K
Sbjct: 66 DLEEARSTVEKRLEFIESEIKRVEASITDVNKK 98
>sp|P52554|PFD6_CAEEL Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6
PE=2 SV=1
Length = 126
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQ 66
K E E+N + +K+ +K RQ + +L E+++V+ ELDLM+ D +VYKLIG +LV+Q
Sbjct: 6 KFEEEVNKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQ 65
Query: 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 99
++EEA+ V+KR+++I +E KR + +I+ + K
Sbjct: 66 DLEEARSTVEKRLEFIDSETKRVEASISDISKK 98
>sp|Q54M71|PFD6_DICDI Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6
PE=3 SV=1
Length = 140
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIG 60
++++Q +L + F+ + E QK+ R L QLNENE V+KE DL++ + ++YKL G
Sbjct: 15 IQQIQDQLIKARDAFQVHETELQKLSASRSKLLTQLNENEMVKKEFDLLESEAKIYKLNG 74
Query: 61 PILVKQEMEEAKQNVKKRIDYISAELK 87
P+L KQ EEA+ + R+D I+ LK
Sbjct: 75 PVLFKQTKEEAENTITSRLDIINNNLK 101
>sp|O14450|PFD6_SCHPO Probable prefoldin subunit 6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3A11.13 PE=3 SV=1
Length = 114
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD-LMKDGEVYKLIG 60
+EE+ KK +N Q E + + L QL EN +V EL+ + D +YK IG
Sbjct: 1 MEELAKKYQN-------LQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIG 53
Query: 61 PILVKQEMEEAKQNVKKRIDYISAELKR 88
P LVKQ EEAK NVK R+D+I+ E+ R
Sbjct: 54 PTLVKQSHEEAKTNVKTRLDFINKEIAR 81
>sp|P52553|PFD6_YEAST Prefoldin subunit 6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YKE2 PE=1 SV=1
Length = 114
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELD-LMKDGEVYKLIGPILVKQEMEEAKQN 74
++Q Q E ++ + RQ L QL EN+ V +E D L +D VYKL G +L+ E EA+ N
Sbjct: 8 YQQLQNELEEFIVARQKLETQLQENKIVNEEFDQLEEDTPVYKLTGNVLLPVEQSEARTN 67
Query: 75 VKKRIDYISAELKRHDDTI 93
V KR+++I E+ R + I
Sbjct: 68 VDKRLEFIETEITRCEKNI 86
>sp|B1Y973|PFDB_PYRNV Prefoldin subunit beta OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=pfdB PE=3 SV=1
Length = 126
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD-LMKDGEVYKLIGPI 62
++ L++ +N F Q Q + Q VL ++Q A+L E E E++ L +D ++YK +G
Sbjct: 3 QIPPSLQDLVNRFNQAQAQLQSVLLRKQQYEAELKEVEKALAEIEKLPQDAKIYKSVGNF 62
Query: 63 LVKQEMEEAKQNVKKR 78
L+ Q + A Q +K+R
Sbjct: 63 LIPQTKDAALQELKER 78
>sp|Q4JB32|PFDB_SULAC Prefoldin subunit beta OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=pfdB PE=3 SV=1
Length = 125
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKEL-DLMKDGEVYKLI 59
M E + +L+ EL +Q Q++ +V+ +R ++ +QL E V EL L D +YK++
Sbjct: 1 MTERLPPELQTELVKLQQLQEQLNRVIAERSVIDSQLREVNKVLDELKQLPSDTIIYKIV 60
Query: 60 GPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104
G +LVK K NV+K +D L+ T +TK T L
Sbjct: 61 GNLLVKVN----KDNVEKELDDQKTILELRSRTYQNQETKLRTQL 101
>sp|Q9YC11|PFDB_AERPE Prefoldin subunit beta OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pfdB PE=3
SV=1
Length = 123
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD-LMKDGEVYKLI 59
MVE + ++E + + + ++ V+ ++ + A L E ESV KEL+ L +D E+Y+L
Sbjct: 1 MVERLPPEVEAKYTKYLKLRETLSVVMREKATVEAGLAEVESVLKELEGLPEDAELYRLT 60
Query: 60 GPILVKQEMEEAKQNVKKRIDYISAELK 87
G +LVK+ E +++ KR + + +LK
Sbjct: 61 GFVLVKKSKNEVVEDLNKRKEDLELKLK 88
>sp|A4WM72|PFDB_PYRAR Prefoldin subunit beta OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=pfdB PE=3 SV=1
Length = 124
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD-LMKDGEVYKLIGPI 62
++ L++ +N F Q Q + Q VL ++Q A+L E + E++ L D +++K +G
Sbjct: 3 QIPPSLQDMVNRFNQAQAQLQSVLLRKQQYEAELKEVDKAISEIEKLSPDAKIFKNVGNF 62
Query: 63 LVKQEMEEAKQNVKKR 78
LV Q + A Q +K+R
Sbjct: 63 LVPQTRDAALQELKER 78
>sp|A8MB97|PFDB_CALMQ Prefoldin subunit beta OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=pfdB PE=3
SV=1
Length = 121
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD-LMKDGEVYKLI 59
M E+ + N+L+ +Q + + Q VL ++Q +L + EL+ L +D +VYK++
Sbjct: 1 MATEIPPAVRNDLDRLRQLEDQLQAVLLRKQQYEGELRNVDKALNELNKLPQDSKVYKVV 60
Query: 60 GPILVKQEMEEAKQNVKKRIDYISAELK 87
G L+ +EA Q++ +R + + L+
Sbjct: 61 GTFLLSTTRDEAIQDLNQRKELLDLHLQ 88
>sp|Q8I3Y6|PFD6_PLAF7 Probable prefoldin subunit 6 OS=Plasmodium falciparum (isolate
3D7) GN=PFE0595w PE=3 SV=2
Length = 119
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 33 LSAQLNENESVQKELDLMKDGEV-YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDD 91
L Q ENE + +E+ +++D V +KL+G +LVK+E + + +R+ YI+ E++
Sbjct: 30 LITQKVENEMLLEEVKVLEDDSVLHKLVGLVLVKEEKSKCYDTISRRLQYITGEIENRKK 89
Query: 92 TIA 94
I
Sbjct: 90 VIT 92
>sp|Q975H2|PFDB_SULTO Prefoldin subunit beta OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=pfdB PE=3 SV=1
Length = 125
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGE-VYKLI 59
M E + +L+ +L +Q Q + ++L ++ ++ ++L E + +EL + G VYK++
Sbjct: 1 MTERIPPELQTQLVKLQQLQDQLNRLLTEKNVIDSELREVNKILQELSQLPAGTTVYKIV 60
Query: 60 GPILVKQEMEEAKQNVKKRID 80
G +LVK + K+ V+K +D
Sbjct: 61 GNLLVKTD----KETVQKELD 77
>sp|Q8TYC7|PFDB_METKA Prefoldin subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=pfdB PE=3 SV=1
Length = 120
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 26 VLNQRQLLSAQLNENESVQKELD-LMKDGEVYKLIGPIL-------VKQEMEEAKQNVKK 77
++ Q+Q L QL E E KELD + +D +VYK +G +L VK+E+E+ K+ ++
Sbjct: 22 IVAQKQQLELQLREIERALKELDEIEEDTKVYKTVGGLLIEADRDEVKEELEDRKETLEL 81
Query: 78 RIDYISAELKRHDDTIATL 96
R+ + + KR I L
Sbjct: 82 RVKTLEKQEKRLQQQIENL 100
>sp|A0M8T5|CTTB2_FELCA Cortactin-binding protein 2 OS=Felis catus GN=CTTNBP2 PE=3 SV=1
Length = 1658
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPI 62
E QKKLE E + ++E+QK L+A+L E K + LM E +L G +
Sbjct: 133 ESRQKKLEMEKLQLQAVEQEHQK-------LAARLEEERGKNKHVVLMLVKECKQLSGKV 185
Query: 63 L--------VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 99
+ V ++EE K + +SAE +R + A ++ +
Sbjct: 186 IEEAQKLEEVMAKLEEEKTKTSALEEELSAEKRRSTEMEAQMEKQ 230
>sp|B0TX13|GCP_FRAP2 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella philomiragia subsp. philomiragia (strain
ATCC 25017) GN=gcp PE=3 SV=1
Length = 336
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C+K QK N+R ++S ++ N+ ++ +LD++ + Y++ P
Sbjct: 251 LVTKCEKALQKTGNKRLVISGGVSANKLLRSKLDILSKNKGYEIFFP 297
>sp|A6VIN4|PFDB_METM7 Prefoldin subunit beta OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=pfdB PE=3 SV=1
Length = 113
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 29 QRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82
Q+Q QL E E +E++ EV+K+ G IL+K+ E K+ + +R++ +
Sbjct: 27 QKQQFETQLKEMEKAIEEMEKSGSDEVFKMAGGILIKRNKAEVKEELSERVETL 80
>sp|P12755|SKI_HUMAN Ski oncogene OS=Homo sapiens GN=SKI PE=1 SV=1
Length = 728
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 2 VEEVQKKLENELNLFKQCQKEYQKVLN----QRQLLSAQLNENESVQKELDLMKDGEVYK 57
+E +++ LE L+ + +K +V+ Q + LSA L S+ +EL+ ++ + K
Sbjct: 542 LEHLRQALEGGLDTKEAKEKFLHEVVKMRVKQEEKLSAALQAKRSLHQELEFLRVAKKEK 601
Query: 58 LIGPILVKQEMEEAKQNVKKRIDYISAE 85
L +E EAK+N++K I+ + AE
Sbjct: 602 L-------REATEAKRNLRKEIERLRAE 622
>sp|Q9TUG2|SKI_HORSE Ski oncogene OS=Equus caballus GN=SKI PE=2 SV=1
Length = 730
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 2 VEEVQKKLENELNLFKQCQKEYQKVLN----QRQLLSAQLNENESVQKELDLMKDGEVYK 57
+E +++ LE L+ + +K +V+ Q + LSA L S+ +EL+ ++ + K
Sbjct: 544 LEHLRQALEGGLDTKEAKEKFLHEVVKMRVKQEEKLSAALQAKRSLHQELEFLRVAKKEK 603
Query: 58 LIGPILVKQEMEEAKQNVKKRIDYISAE 85
L +E EAK+N++K I+ + AE
Sbjct: 604 L-------REATEAKRNLRKEIERLRAE 624
>sp|A4IWA2|GCP_FRATW Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella tularensis subsp. tularensis (strain
WY96-3418) GN=gcp PE=3 SV=1
Length = 336
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C K QK N R ++S ++ N+ ++ +LDL+ Y++ P
Sbjct: 251 LVSKCAKALQKTKNTRLVISGGVSANKLLRHQLDLLAKNRGYQIFFP 297
>sp|Q5NIC9|GCP_FRATT Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella tularensis subsp. tularensis (strain SCHU
S4 / Schu 4) GN=gcp PE=3 SV=1
Length = 336
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C K QK N R ++S ++ N+ ++ +LDL+ Y++ P
Sbjct: 251 LVSKCAKALQKTKNTRLVISGGVSANKLLRHQLDLLAKNRGYQIFFP 297
>sp|A0Q864|GCP_FRATN Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella tularensis subsp. novicida (strain U112)
GN=gcp PE=3 SV=1
Length = 336
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C K QK N R ++S ++ N+ ++ +LDL+ Y++ P
Sbjct: 251 LVSKCAKALQKTKNTRLVISGGVSANKLLRHQLDLLAKNRGYQIFFP 297
>sp|B2SFD9|GCP_FRATM Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella tularensis subsp. mediasiatica (strain
FSC147) GN=gcp PE=3 SV=1
Length = 336
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C K QK N R ++S ++ N+ ++ +LDL+ Y++ P
Sbjct: 251 LVSKCAKALQKTKNTRLVISGGVSANKLLRHQLDLLAKNRGYQIFFP 297
>sp|Q14JT2|GCP_FRAT1 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella tularensis subsp. tularensis (strain FSC
198) GN=gcp PE=3 SV=1
Length = 336
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C K QK N R ++S ++ N+ ++ +LDL+ Y++ P
Sbjct: 251 LVSKCAKALQKTKNTRLVISGGVSANKLLRHQLDLLAKNRGYQIFFP 297
>sp|A9A852|PFDB_METM6 Prefoldin subunit beta OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=pfdB PE=3 SV=1
Length = 113
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 29 QRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82
Q+Q QL E E +E++ EV+K+ G IL+K+ E K+ + +R++ +
Sbjct: 27 QKQQFETQLKEMEKAIEEMEKSGSEEVFKMAGGILIKRNKAEVKEELSERVETL 80
>sp|Q07E28|CTTB2_NEONE Cortactin-binding protein 2 OS=Neofelis nebulosa GN=CTTNBP2 PE=3
SV=1
Length = 1658
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPI 62
E QKKLE E + ++E+QK L+A+L E K + LM E +L G +
Sbjct: 133 ESRQKKLEMEKLQLQAVEQEHQK-------LAARLEEERGKNKHVVLMLVKECKQLSGKV 185
Query: 63 L--------VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 99
+ V ++EE K + +SAE +R + A ++ +
Sbjct: 186 IEEAQKLEEVMVKLEEEKTKTSALEEELSAEKRRSTEMEAQMEKQ 230
>sp|O58268|PFDB_PYRHO Prefoldin subunit beta OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pfdB PE=1 SV=1
Length = 117
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 33 LSAQLNENESVQKELD-LMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAEL 86
+ A LNE + +E++ L D ++YK +G ++VK E+A Q +K++I+ + L
Sbjct: 32 VQADLNEAKKALEEIETLPDDAQIYKTVGTLIVKTTKEKAVQELKEKIETLEVRL 86
>sp|A6URN3|PFDB_METVS Prefoldin subunit beta OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=pfdB PE=3 SV=1
Length = 113
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 29 QRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82
Q+Q QL E E +E++ EV+K+ G ILVK+ +E K+ + ++++ +
Sbjct: 27 QKQQFETQLKEMEKAVEEMEKSTSDEVFKMAGGILVKRNKDEVKEELSEKMETM 80
>sp|A7NEB6|GCP_FRATF Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella tularensis subsp. holarctica (strain
FTNF002-00 / FTA) GN=gcp PE=3 SV=1
Length = 336
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C K QK N R ++S ++ N+ ++ +LDL+ Y++ P
Sbjct: 251 LVSKCAKALQKTKNTRLVISGGVSANKLLRHQLDLLAKNREYQIFFP 297
>sp|Q0BKC8|GCP_FRATO Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella tularensis subsp. holarctica (strain
OSU18) GN=gcp PE=3 SV=1
Length = 336
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C K QK N R ++S ++ N+ ++ +LDL+ Y++ P
Sbjct: 251 LVSKCAKALQKTKNTRLVISGGVSANKLLRHQLDLLAKNREYQIFFP 297
>sp|Q2A1N0|GCP_FRATH Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella tularensis subsp. holarctica (strain LVS)
GN=gcp PE=3 SV=1
Length = 336
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGP 61
L +C K QK N R ++S ++ N+ ++ +LDL+ Y++ P
Sbjct: 251 LVSKCAKALQKTKNTRLVISGGVSANKLLRHQLDLLAKNREYQIFFP 297
>sp|Q6M0M5|PFDB_METMP Prefoldin subunit beta OS=Methanococcus maripaludis (strain S2 /
LL) GN=pfdB PE=3 SV=1
Length = 113
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 29 QRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82
Q+Q QL E E +E++ EV+K+ G ILVK+ E K+ + ++I+ +
Sbjct: 27 QKQQFETQLKEMEKAIEEMEKSDSEEVFKMAGGILVKRNKAEVKEELSEKIETL 80
>sp|Q9UYJ4|PFDB_PYRAB Prefoldin subunit beta OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=pfdB PE=3 SV=1
Length = 117
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 33 LSAQLNENESVQKELD-LMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAEL 86
+ A LNE + +E++ L D +VYK +G ++VK E+A Q +K++++ + L
Sbjct: 32 VQADLNEAKKALEEIEALPDDAQVYKTVGTLIVKTTKEKALQELKEKVETLEVRL 86
>sp|Q58394|PFDB_METJA Prefoldin subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pfdB PE=3 SV=2
Length = 113
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 30 RQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELK 87
+Q + +L E + +EL+ EVYKL+G + VK++ E+ K+ ++++++ + +K
Sbjct: 28 KQSVETELKECKKALEELEKSSSDEVYKLVGGLFVKRKKEDVKKELEEKVETLELRVK 85
>sp|A4FZU2|PFDB_METM5 Prefoldin subunit beta OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=pfdB PE=3 SV=1
Length = 113
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 29 QRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82
Q+Q QL E E +E++ EV+K+ G IL+K+ E K+ + ++++ +
Sbjct: 27 QKQQFETQLKEMEKAIEEMEKSGSDEVFKMAGGILIKRNKAEVKEELSEKVETL 80
>sp|Q9UXB8|PFDB_SULSO Prefoldin subunit beta OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=pfdB PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI 59
M E++ +++ +L F+Q + + ++L ++ + +L E V +EL ++ D +YK++
Sbjct: 1 MAEKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIV 60
Query: 60 GPILVKQE 67
G +LVK +
Sbjct: 61 GNLLVKSD 68
>sp|C3NED4|PFDB_SULIY Prefoldin subunit beta OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=pfdB PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI 59
M E++ +++ +L F+Q + + ++L ++ + +L E V +EL ++ D +YK++
Sbjct: 1 MAEKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIV 60
Query: 60 GPILVKQE 67
G +LVK +
Sbjct: 61 GNLLVKSD 68
>sp|C3NHB8|PFDB_SULIN Prefoldin subunit beta OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=pfdB PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI 59
M E++ +++ +L F+Q + + ++L ++ + +L E V +EL ++ D +YK++
Sbjct: 1 MAEKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIV 60
Query: 60 GPILVKQE 67
G +LVK +
Sbjct: 61 GNLLVKSD 68
>sp|C3MVG9|PFDB_SULIM Prefoldin subunit beta OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=pfdB PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI 59
M E++ +++ +L F+Q + + ++L ++ + +L E V +EL ++ D +YK++
Sbjct: 1 MAEKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIV 60
Query: 60 GPILVKQE 67
G +LVK +
Sbjct: 61 GNLLVKSD 68
>sp|C3MQ51|PFDB_SULIL Prefoldin subunit beta OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=pfdB PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI 59
M E++ +++ +L F+Q + + ++L ++ + +L E V +EL ++ D +YK++
Sbjct: 1 MAEKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIV 60
Query: 60 GPILVKQE 67
G +LVK +
Sbjct: 61 GNLLVKSD 68
>sp|C4KHE7|PFDB_SULIK Prefoldin subunit beta OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=pfdB PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI 59
M E++ +++ +L F+Q + + ++L ++ + +L E V +EL ++ D +YK++
Sbjct: 1 MAEKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIV 60
Query: 60 GPILVKQE 67
G +LVK +
Sbjct: 61 GNLLVKSD 68
>sp|C3N5R8|PFDB_SULIA Prefoldin subunit beta OS=Sulfolobus islandicus (strain M.16.27)
GN=pfdB PE=3 SV=1
Length = 126
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI 59
M E++ +++ +L F+Q + + ++L ++ + +L E V +EL ++ D +YK++
Sbjct: 1 MAEKLPPEVQAQLAKFQQLKDQLDRLLLEKSTIENELREINKVLEELSVLNADATIYKIV 60
Query: 60 GPILVKQE 67
G +LVK +
Sbjct: 61 GNLLVKSD 68
>sp|Q8U3S3|PFDB_PYRFU Prefoldin subunit beta OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=pfdB PE=3 SV=2
Length = 117
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 33 LSAQLNENESVQKELD-LMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAEL 86
+ A LNE + +E++ L D +YK +G ++VK E+A Q +K++++ + L
Sbjct: 32 VQADLNEAKKALEEIEKLTDDAVIYKTVGTLIVKTTKEKALQELKEKVETLEVRL 86
>sp|Q3ITY6|PFDB_NATPD Prefoldin subunit beta OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=pfdB PE=3 SV=1
Length = 131
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 35 AQLNENESVQKELD-LMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82
QL E+E+ + LD + D ++Y+ +G +L++ + +EA +N+++++D +
Sbjct: 35 TQLRESETALETLDDIEGDTQMYQEVGELLIETDYDEAYENLEEKVDSL 83
>sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif11 PE=2 SV=2
Length = 138
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 38 NENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88
NENE+ ++EL ++G++Y + +L +E A + KR+ +I +L++
Sbjct: 17 NENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRK 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,853,852
Number of Sequences: 539616
Number of extensions: 1288449
Number of successful extensions: 7602
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 7266
Number of HSP's gapped (non-prelim): 620
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)