Query psy14230
Match_columns 110
No_of_seqs 100 out of 445
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:44:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09343 prefoldin subunit bet 100.0 2.3E-27 5E-32 162.5 13.8 108 1-108 1-109 (121)
2 KOG3478|consensus 99.9 4E-27 8.8E-32 157.6 12.5 105 4-108 2-107 (120)
3 TIGR02338 gimC_beta prefoldin, 99.9 7E-27 1.5E-31 157.4 12.7 104 5-108 1-105 (110)
4 COG1382 GimC Prefoldin, chaper 99.9 1E-26 2.2E-31 158.3 12.5 107 2-108 1-108 (119)
5 KOG4098|consensus 99.9 1.3E-24 2.8E-29 149.5 12.2 102 5-106 13-115 (140)
6 cd00632 Prefoldin_beta Prefold 99.9 1.6E-24 3.5E-29 144.7 12.4 100 9-108 1-101 (105)
7 PF01920 Prefoldin_2: Prefoldi 99.9 6.6E-21 1.4E-25 125.7 10.4 99 10-108 1-100 (106)
8 cd00890 Prefoldin Prefoldin is 99.5 2.1E-13 4.6E-18 92.6 9.5 99 10-108 2-125 (129)
9 KOG1760|consensus 99.4 5.4E-12 1.2E-16 86.3 11.1 101 6-107 15-118 (131)
10 PRK03947 prefoldin subunit alp 99.4 1.2E-11 2.6E-16 85.9 10.9 105 4-108 3-132 (140)
11 TIGR00293 prefoldin, archaeal 99.2 1.3E-10 2.8E-15 79.2 10.2 99 10-108 2-124 (126)
12 cd00584 Prefoldin_alpha Prefol 99.1 1.6E-09 3.5E-14 74.1 9.5 99 10-108 2-125 (129)
13 PRK14011 prefoldin subunit alp 98.7 5.5E-07 1.2E-11 63.5 10.6 101 7-107 3-125 (144)
14 COG1730 GIM5 Predicted prefold 98.6 7.4E-07 1.6E-11 62.9 10.1 105 3-107 2-131 (145)
15 PF02996 Prefoldin: Prefoldin 98.0 8.6E-06 1.9E-10 54.6 4.7 88 21-108 3-115 (120)
16 KOG3501|consensus 97.6 0.0036 7.9E-08 42.0 11.3 87 17-103 13-107 (114)
17 COG1382 GimC Prefoldin, chaper 97.5 0.0028 6E-08 43.5 10.3 100 3-103 9-110 (119)
18 PRK01203 prefoldin subunit alp 97.5 0.0034 7.4E-08 43.6 10.5 93 11-104 4-121 (130)
19 cd00632 Prefoldin_beta Prefold 96.8 0.039 8.4E-07 36.4 10.0 102 3-105 2-105 (105)
20 PRK09343 prefoldin subunit bet 96.3 0.11 2.4E-06 35.4 10.3 102 4-106 11-114 (121)
21 TIGR02338 gimC_beta prefoldin, 96.2 0.12 2.7E-06 34.4 9.9 100 3-103 6-107 (110)
22 PF01920 Prefoldin_2: Prefoldi 96.1 0.075 1.6E-06 34.3 8.3 100 4-103 2-102 (106)
23 PRK03947 prefoldin subunit alp 95.7 0.041 8.9E-07 37.9 5.8 94 14-107 6-124 (140)
24 PF13758 Prefoldin_3: Prefoldi 95.6 0.18 4E-06 33.5 8.5 85 16-100 7-98 (99)
25 COG1730 GIM5 Predicted prefold 95.2 0.075 1.6E-06 37.6 6.0 94 14-107 6-124 (145)
26 PF14712 Snapin_Pallidin: Snap 94.8 0.6 1.3E-05 29.7 10.2 49 2-50 9-57 (92)
27 TIGR00293 prefoldin, archaeal 94.6 0.16 3.5E-06 34.2 6.1 89 17-107 2-116 (126)
28 cd00890 Prefoldin Prefoldin is 93.5 1.5 3.2E-05 29.2 10.6 40 65-104 89-128 (129)
29 PRK11637 AmiB activator; Provi 92.0 5.5 0.00012 32.1 12.6 39 69-107 88-126 (428)
30 PF08946 Osmo_CC: Osmosensory 91.9 0.3 6.5E-06 28.0 3.4 37 67-103 2-38 (46)
31 PRK03918 chromosome segregatio 91.3 7.1 0.00015 34.0 12.7 85 17-103 401-485 (880)
32 PRK03918 chromosome segregatio 90.1 8 0.00017 33.6 11.9 26 72-97 309-334 (880)
33 PRK02224 chromosome segregatio 90.0 4.4 9.5E-05 35.4 10.3 90 11-101 409-499 (880)
34 COG1579 Zn-ribbon protein, pos 89.9 7.2 0.00016 29.7 11.4 44 4-47 28-71 (239)
35 PRK11637 AmiB activator; Provi 89.5 8.1 0.00017 31.2 10.9 33 69-101 95-127 (428)
36 PF12718 Tropomyosin_1: Tropom 88.3 6.8 0.00015 27.3 10.8 28 74-101 77-104 (143)
37 PRK00736 hypothetical protein; 88.0 2.3 4.9E-05 26.1 5.3 42 67-108 2-43 (68)
38 KOG3048|consensus 87.7 8.1 0.00018 27.5 11.1 97 6-102 15-133 (153)
39 PRK00295 hypothetical protein; 86.7 3 6.5E-05 25.6 5.3 41 68-108 3-43 (68)
40 PF04102 SlyX: SlyX; InterPro 86.7 2.9 6.2E-05 25.6 5.3 40 68-107 2-41 (69)
41 KOG3313|consensus 86.3 7.2 0.00016 28.6 7.8 91 9-102 42-160 (187)
42 PRK14011 prefoldin subunit alp 86.1 2 4.4E-05 30.2 4.8 93 15-107 4-118 (144)
43 PHA01750 hypothetical protein 86.0 3.8 8.3E-05 25.4 5.4 44 64-107 28-72 (75)
44 PRK04325 hypothetical protein; 85.6 3.5 7.5E-05 25.7 5.2 41 68-108 7-47 (74)
45 PF00261 Tropomyosin: Tropomyo 85.4 13 0.00028 27.7 10.9 38 69-106 182-219 (237)
46 PRK01156 chromosome segregatio 84.9 27 0.00058 30.8 12.2 84 16-102 418-501 (895)
47 PHA02562 46 endonuclease subun 84.8 20 0.00043 29.5 10.8 34 69-102 298-331 (562)
48 COG5293 Predicted ATPase [Gene 83.7 20 0.00044 30.2 10.2 98 10-107 244-365 (591)
49 PRK04406 hypothetical protein; 83.5 4.7 0.0001 25.3 5.2 41 68-108 9-49 (75)
50 KOG0976|consensus 83.5 34 0.00074 31.0 11.9 92 7-101 106-207 (1265)
51 PRK02793 phi X174 lysis protei 83.5 5 0.00011 24.9 5.2 42 67-108 5-46 (72)
52 PRK00888 ftsB cell division pr 83.3 5.3 0.00011 26.5 5.6 56 6-61 33-90 (105)
53 PRK02119 hypothetical protein; 83.1 5.1 0.00011 24.9 5.2 41 68-108 7-47 (73)
54 PF10303 DUF2408: Protein of u 82.5 9.1 0.0002 26.5 6.8 87 3-89 3-124 (134)
55 PF05816 TelA: Toxic anion res 81.5 22 0.00048 27.9 9.5 92 7-98 84-190 (333)
56 PF13118 DUF3972: Protein of u 81.4 5.2 0.00011 27.7 5.2 41 68-108 83-123 (126)
57 cd00584 Prefoldin_alpha Prefol 79.8 15 0.00033 24.5 10.9 38 66-103 90-127 (129)
58 PF13093 FTA4: Kinetochore com 79.4 11 0.00024 28.0 6.8 68 11-93 139-207 (213)
59 KOG0250|consensus 79.0 53 0.0011 30.3 11.8 92 15-107 338-431 (1074)
60 PF15294 Leu_zip: Leucine zipp 78.8 29 0.00063 27.1 12.3 102 5-109 137-240 (278)
61 PF09726 Macoilin: Transmembra 78.7 45 0.00098 29.2 11.9 84 18-107 492-575 (697)
62 KOG0995|consensus 78.0 38 0.00083 29.0 10.2 94 10-108 231-325 (581)
63 smart00150 SPEC Spectrin repea 77.9 13 0.00028 22.5 6.3 67 30-97 30-97 (101)
64 PF03961 DUF342: Protein of un 77.6 37 0.0008 27.7 10.4 78 18-103 331-408 (451)
65 PF11471 Sugarporin_N: Maltopo 77.5 6.6 0.00014 23.6 4.2 34 71-104 26-59 (60)
66 COG1579 Zn-ribbon protein, pos 77.4 30 0.00064 26.4 12.0 98 9-106 40-146 (239)
67 KOG0980|consensus 77.4 38 0.00083 30.6 10.3 42 67-108 463-504 (980)
68 PF08657 DASH_Spc34: DASH comp 77.1 25 0.00053 27.1 8.2 46 11-56 177-223 (259)
69 PRK00846 hypothetical protein; 76.4 13 0.00029 23.5 5.5 44 65-108 8-51 (77)
70 PF13949 ALIX_LYPXL_bnd: ALIX 75.9 26 0.00057 26.4 8.1 103 4-107 6-114 (296)
71 PF09006 Surfac_D-trimer: Lung 75.6 5.1 0.00011 23.0 3.1 43 17-59 2-45 (46)
72 PF10393 Matrilin_ccoil: Trime 75.4 11 0.00023 21.7 4.5 30 64-93 17-46 (47)
73 PF04912 Dynamitin: Dynamitin 75.3 40 0.00088 26.9 11.0 102 5-106 244-358 (388)
74 PRK04778 septation ring format 75.0 50 0.0011 27.9 12.2 101 5-107 315-427 (569)
75 PRK01203 prefoldin subunit alp 74.9 20 0.00043 24.9 6.6 88 18-107 4-117 (130)
76 KOG3047|consensus 74.7 27 0.00058 24.6 8.7 92 5-96 28-131 (157)
77 PRK02224 chromosome segregatio 74.6 59 0.0013 28.5 11.8 15 83-97 278-292 (880)
78 PF09932 DUF2164: Uncharacteri 74.2 6.6 0.00014 24.7 3.7 37 54-90 38-74 (76)
79 PRK04863 mukB cell division pr 73.5 87 0.0019 30.0 12.6 86 16-106 392-478 (1486)
80 PF12761 End3: Actin cytoskele 73.5 28 0.00062 25.8 7.4 85 18-104 100-194 (195)
81 KOG1655|consensus 73.3 11 0.00023 28.2 5.2 39 66-104 15-53 (218)
82 PHA00489 scaffolding protein 72.1 16 0.00036 24.0 5.2 46 9-63 29-75 (101)
83 PF09738 DUF2051: Double stran 72.0 24 0.00052 27.8 7.1 88 18-105 151-247 (302)
84 KOG0964|consensus 71.6 60 0.0013 30.0 10.1 93 15-107 786-891 (1200)
85 PF04977 DivIC: Septum formati 71.2 19 0.00041 21.6 5.3 12 46-57 64-76 (80)
86 PF08656 DASH_Dad3: DASH compl 70.4 7 0.00015 24.9 3.2 46 6-51 2-47 (78)
87 KOG0933|consensus 70.2 92 0.002 28.8 12.2 46 5-50 682-727 (1174)
88 PF13815 Dzip-like_N: Iguana/D 69.9 30 0.00065 23.1 6.9 76 32-107 24-117 (118)
89 PF08317 Spc7: Spc7 kinetochor 69.2 53 0.0012 25.7 12.9 37 15-51 171-207 (325)
90 PRK09039 hypothetical protein; 69.0 56 0.0012 25.9 12.0 41 5-45 65-105 (343)
91 PF05377 FlaC_arch: Flagella a 68.2 21 0.00045 21.2 4.7 29 75-103 5-33 (55)
92 PRK14127 cell division protein 67.9 23 0.0005 23.8 5.5 41 68-108 28-68 (109)
93 PF00261 Tropomyosin: Tropomyo 67.6 13 0.00029 27.7 4.8 25 20-44 84-108 (237)
94 KOG1029|consensus 67.6 97 0.0021 28.1 12.2 38 68-105 540-577 (1118)
95 KOG0996|consensus 67.3 1.1E+02 0.0024 28.7 11.5 103 7-109 391-504 (1293)
96 COG4550 Predicted membrane pro 66.5 15 0.00033 25.1 4.3 56 28-90 25-84 (120)
97 TIGR00606 rad50 rad50. This fa 66.4 1.1E+02 0.0024 28.5 11.2 16 5-20 914-929 (1311)
98 COG3883 Uncharacterized protei 66.3 19 0.0004 28.0 5.4 34 71-104 39-72 (265)
99 PF13514 AAA_27: AAA domain 66.1 1E+02 0.0022 28.1 10.8 41 63-103 235-275 (1111)
100 PF06698 DUF1192: Protein of u 66.0 20 0.00044 21.5 4.4 29 71-99 22-50 (59)
101 TIGR03185 DNA_S_dndD DNA sulfu 65.6 86 0.0019 26.8 10.3 16 22-37 392-407 (650)
102 PRK01156 chromosome segregatio 65.1 99 0.0021 27.3 12.9 30 21-50 249-278 (895)
103 PF05377 FlaC_arch: Flagella a 64.9 14 0.00029 22.0 3.5 29 72-100 9-37 (55)
104 PF10168 Nup88: Nuclear pore c 64.5 1E+02 0.0022 27.2 12.3 95 5-102 570-664 (717)
105 PF05667 DUF812: Protein of un 63.5 97 0.0021 26.7 11.6 36 70-105 387-422 (594)
106 smart00338 BRLZ basic region l 63.0 29 0.00063 20.5 5.6 40 69-108 25-64 (65)
107 PF15619 Lebercilin: Ciliary p 62.4 59 0.0013 23.8 8.4 29 73-101 121-149 (194)
108 PF12998 ING: Inhibitor of gro 62.0 38 0.00082 21.4 7.3 89 2-101 10-103 (105)
109 TIGR00606 rad50 rad50. This fa 61.9 1.4E+02 0.003 27.9 12.4 35 8-42 830-864 (1311)
110 PF09726 Macoilin: Transmembra 61.5 1.1E+02 0.0025 26.8 11.7 98 9-106 547-658 (697)
111 PRK05771 V-type ATP synthase s 59.7 81 0.0018 26.9 8.6 40 67-106 83-122 (646)
112 PF03148 Tektin: Tektin family 59.4 92 0.002 25.0 10.0 83 18-105 61-151 (384)
113 PF00435 Spectrin: Spectrin re 59.2 37 0.0008 20.4 10.0 70 31-101 34-104 (105)
114 PF08317 Spc7: Spc7 kinetochor 59.2 84 0.0018 24.5 12.1 23 81-103 234-256 (325)
115 PF07047 OPA3: Optic atrophy 3 58.8 46 0.00099 22.8 5.8 51 53-104 82-132 (134)
116 PTZ00464 SNF-7-like protein; P 58.8 37 0.00081 25.3 5.7 39 65-103 13-51 (211)
117 COG3853 TelA Uncharacterized p 58.6 1E+02 0.0022 25.3 9.7 96 2-97 125-236 (386)
118 PF06160 EzrA: Septation ring 58.2 1.1E+02 0.0025 25.8 9.2 75 31-107 347-423 (560)
119 COG2900 SlyX Uncharacterized p 58.0 44 0.00096 20.9 5.2 43 66-108 4-46 (72)
120 smart00787 Spc7 Spc7 kinetocho 56.3 98 0.0021 24.4 12.8 40 12-51 163-202 (312)
121 TIGR03017 EpsF chain length de 56.0 36 0.00078 27.2 5.6 45 62-106 156-200 (444)
122 PRK11519 tyrosine kinase; Prov 54.7 34 0.00073 29.7 5.5 53 54-106 244-296 (719)
123 PRK07353 F0F1 ATP synthase sub 54.6 41 0.00089 22.6 5.0 38 71-108 30-67 (140)
124 PRK09841 cryptic autophosphory 54.6 34 0.00074 29.7 5.6 53 54-106 244-296 (726)
125 PF10368 YkyA: Putative cell-w 54.5 70 0.0015 23.6 6.5 45 52-96 48-98 (204)
126 KOG1003|consensus 53.6 92 0.002 23.3 7.2 67 40-106 111-187 (205)
127 PF03148 Tektin: Tektin family 53.5 1.2E+02 0.0025 24.4 12.2 30 16-45 260-289 (384)
128 PF04912 Dynamitin: Dynamitin 52.9 1.2E+02 0.0025 24.3 9.8 40 7-46 315-354 (388)
129 PRK04778 septation ring format 52.9 88 0.0019 26.4 7.6 75 16-90 100-185 (569)
130 PF04102 SlyX: SlyX; InterPro 52.9 50 0.0011 20.0 5.6 19 84-102 32-50 (69)
131 PF12128 DUF3584: Protein of u 52.7 2E+02 0.0042 26.8 12.4 42 67-108 349-390 (1201)
132 PF02994 Transposase_22: L1 tr 52.6 44 0.00095 26.8 5.6 37 69-105 150-186 (370)
133 TIGR02231 conserved hypothetic 52.5 1.3E+02 0.0029 24.8 11.7 38 6-43 70-107 (525)
134 cd00176 SPEC Spectrin repeats, 52.4 72 0.0016 21.7 6.8 26 73-98 182-207 (213)
135 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.4 71 0.0015 21.6 9.4 19 33-51 47-65 (132)
136 PF02996 Prefoldin: Prefoldin 52.2 40 0.00086 21.9 4.5 34 74-107 74-107 (120)
137 PF08898 DUF1843: Domain of un 51.9 45 0.00097 19.7 4.1 34 2-35 19-52 (53)
138 PF12325 TMF_TATA_bd: TATA ele 51.8 74 0.0016 21.6 11.3 34 72-105 70-103 (120)
139 PF00170 bZIP_1: bZIP transcri 51.8 48 0.001 19.5 5.7 38 69-106 25-62 (64)
140 cd04776 HTH_GnyR Helix-Turn-He 51.8 63 0.0014 21.4 5.5 39 69-107 79-117 (118)
141 PF11932 DUF3450: Protein of u 51.6 99 0.0022 23.1 8.4 45 5-49 47-91 (251)
142 KOG4360|consensus 51.1 1.6E+02 0.0035 25.3 10.9 89 14-107 205-298 (596)
143 smart00787 Spc7 Spc7 kinetocho 50.9 1.2E+02 0.0026 23.9 11.0 26 77-102 232-257 (312)
144 COG2433 Uncharacterized conser 50.9 1.7E+02 0.0037 25.6 11.1 90 11-104 419-508 (652)
145 PF10473 CENP-F_leu_zip: Leuci 50.5 85 0.0018 22.0 10.4 48 4-51 56-103 (140)
146 PF15254 CCDC14: Coiled-coil d 50.4 1.9E+02 0.0042 26.0 10.4 97 5-105 439-543 (861)
147 PF15233 SYCE1: Synaptonemal c 50.3 40 0.00086 23.6 4.3 21 3-23 2-22 (134)
148 PF07989 Microtub_assoc: Micro 50.2 61 0.0013 20.2 6.3 67 37-105 2-71 (75)
149 PF04508 Pox_A_type_inc: Viral 50.0 30 0.00066 16.9 2.7 20 85-104 2-21 (23)
150 TIGR02680 conserved hypothetic 49.8 1.6E+02 0.0035 27.8 9.3 34 9-42 225-258 (1353)
151 PF10186 Atg14: UV radiation r 49.6 1.1E+02 0.0023 22.8 9.8 35 72-106 65-99 (302)
152 PF10779 XhlA: Haemolysin XhlA 49.2 58 0.0013 19.7 5.3 26 78-103 21-46 (71)
153 COG5460 Uncharacterized conser 48.9 69 0.0015 20.4 6.3 36 57-92 44-79 (82)
154 PF06160 EzrA: Septation ring 48.9 1.2E+02 0.0025 25.7 7.7 75 16-90 96-181 (560)
155 KOG2264|consensus 48.7 1.9E+02 0.0041 25.5 9.6 40 11-50 83-122 (907)
156 KOG2196|consensus 48.5 1.3E+02 0.0027 23.3 9.9 34 15-48 121-154 (254)
157 PHA03011 hypothetical protein; 48.3 83 0.0018 21.2 6.0 27 8-34 65-91 (120)
158 cd04769 HTH_MerR2 Helix-Turn-H 48.3 76 0.0017 20.8 5.7 39 67-105 76-114 (116)
159 cd01109 HTH_YyaN Helix-Turn-He 48.2 75 0.0016 20.7 5.7 35 68-102 77-111 (113)
160 PF10458 Val_tRNA-synt_C: Valy 48.2 58 0.0013 19.4 6.8 40 57-96 26-65 (66)
161 PRK10884 SH3 domain-containing 48.1 1.1E+02 0.0024 22.6 9.0 35 72-106 134-168 (206)
162 PF08614 ATG16: Autophagy prot 48.0 71 0.0015 23.0 5.7 34 16-49 76-109 (194)
163 PRK06266 transcription initiat 47.9 17 0.00037 26.2 2.4 30 59-88 142-171 (178)
164 PF04156 IncA: IncA protein; 47.7 97 0.0021 21.8 11.5 18 84-101 165-182 (191)
165 KOG3647|consensus 47.6 1.3E+02 0.0028 23.8 7.2 91 5-99 110-211 (338)
166 PF14193 DUF4315: Domain of un 47.6 42 0.00091 21.5 3.9 28 78-105 2-29 (83)
167 PF10234 Cluap1: Clusterin-ass 47.1 63 0.0014 25.1 5.4 44 64-107 163-206 (267)
168 PF04728 LPP: Lipoprotein leuc 47.0 41 0.00088 20.1 3.5 28 78-105 4-31 (56)
169 PF10018 Med4: Vitamin-D-recep 46.9 48 0.001 23.9 4.6 33 75-107 27-59 (188)
170 PF11945 WASH_WAHD: WAHD domai 46.5 69 0.0015 25.1 5.7 38 68-105 34-71 (297)
171 PF07889 DUF1664: Protein of u 46.0 84 0.0018 21.6 5.4 31 73-103 92-122 (126)
172 COG1196 Smc Chromosome segrega 45.8 2.5E+02 0.0054 25.9 11.8 38 10-47 242-279 (1163)
173 TIGR02231 conserved hypothetic 45.3 1.8E+02 0.0038 24.1 8.5 91 15-107 72-168 (525)
174 KOG1760|consensus 45.3 1E+02 0.0022 21.4 9.7 89 12-100 28-118 (131)
175 PF03962 Mnd1: Mnd1 family; I 45.2 82 0.0018 22.8 5.6 37 68-104 60-96 (188)
176 KOG2577|consensus 45.1 55 0.0012 26.5 5.0 67 39-105 110-179 (354)
177 PF13514 AAA_27: AAA domain 45.1 2.5E+02 0.0054 25.7 11.4 32 71-102 802-833 (1111)
178 KOG1507|consensus 44.7 55 0.0012 26.5 4.9 31 1-31 67-97 (358)
179 PF13758 Prefoldin_3: Prefoldi 44.6 92 0.002 20.7 6.3 71 37-107 11-98 (99)
180 PF02388 FemAB: FemAB family; 44.5 44 0.00096 26.9 4.5 31 62-92 234-264 (406)
181 PF12718 Tropomyosin_1: Tropom 44.4 1.1E+02 0.0023 21.3 11.5 35 16-50 37-71 (143)
182 COG5509 Uncharacterized small 44.4 59 0.0013 19.8 3.9 25 72-96 27-51 (65)
183 PF11285 DUF3086: Protein of u 44.0 77 0.0017 24.7 5.4 35 68-102 2-36 (283)
184 TIGR02977 phageshock_pspA phag 43.9 1.3E+02 0.0028 22.1 11.6 79 10-88 102-184 (219)
185 PF03357 Snf7: Snf7; InterPro 43.8 64 0.0014 22.0 4.7 35 70-104 1-35 (171)
186 PF10498 IFT57: Intra-flagella 42.9 1.4E+02 0.003 24.0 7.0 33 7-39 266-298 (359)
187 PRK00295 hypothetical protein; 42.8 77 0.0017 19.2 5.4 19 30-48 7-25 (68)
188 KOG4674|consensus 42.7 3.5E+02 0.0076 26.8 11.1 93 9-105 1245-1342(1822)
189 TIGR01843 type_I_hlyD type I s 42.4 1.6E+02 0.0035 22.9 9.1 32 72-103 139-170 (423)
190 CHL00019 atpF ATP synthase CF0 42.2 58 0.0013 23.2 4.4 40 69-108 47-86 (184)
191 KOG0161|consensus 42.1 3.6E+02 0.0079 26.8 11.9 100 8-107 993-1113(1930)
192 PF04949 Transcrip_act: Transc 41.8 1.3E+02 0.0028 21.6 9.0 68 24-105 52-119 (159)
193 KOG0250|consensus 41.8 3E+02 0.0064 25.7 11.4 30 72-101 403-432 (1074)
194 PLN02678 seryl-tRNA synthetase 41.7 2E+02 0.0044 23.8 10.6 32 73-104 74-105 (448)
195 PF05524 PEP-utilisers_N: PEP- 41.6 17 0.00037 24.0 1.4 46 59-106 12-57 (123)
196 PF07889 DUF1664: Protein of u 41.3 1.1E+02 0.0024 21.0 5.5 24 77-100 68-91 (126)
197 PRK00736 hypothetical protein; 41.2 82 0.0018 19.1 5.4 21 29-49 6-26 (68)
198 KOG0996|consensus 41.1 3.2E+02 0.0069 25.9 11.9 35 5-39 783-817 (1293)
199 KOG0243|consensus 41.0 3E+02 0.0065 25.6 10.5 78 16-100 436-513 (1041)
200 PF05384 DegS: Sensor protein 40.9 1.3E+02 0.0029 21.4 10.9 47 2-48 8-54 (159)
201 PRK10698 phage shock protein P 40.6 1.5E+02 0.0033 22.0 11.4 93 15-107 107-217 (222)
202 PRK05771 V-type ATP synthase s 40.5 2.3E+02 0.005 24.2 8.4 40 65-104 88-127 (646)
203 PHA01750 hypothetical protein 40.5 90 0.002 19.4 4.9 31 72-102 44-74 (75)
204 PF03962 Mnd1: Mnd1 family; I 40.4 1.4E+02 0.0031 21.6 10.5 35 16-50 64-98 (188)
205 PF10018 Med4: Vitamin-D-recep 40.3 75 0.0016 22.8 4.8 52 52-103 11-62 (188)
206 PF07111 HCR: Alpha helical co 40.2 2.7E+02 0.0058 24.8 8.6 48 60-107 497-544 (739)
207 TIGR01005 eps_transp_fam exopo 40.1 81 0.0018 27.3 5.6 49 58-106 175-223 (754)
208 PF06133 DUF964: Protein of un 40.1 68 0.0015 20.4 4.1 43 7-49 33-76 (108)
209 COG0216 PrfA Protein chain rel 40.0 2E+02 0.0044 23.3 8.9 91 4-101 4-100 (363)
210 PF04816 DUF633: Family of unk 40.0 46 0.001 24.5 3.6 35 56-90 151-185 (205)
211 PF07195 FliD_C: Flagellar hoo 40.0 53 0.0012 24.4 4.0 33 75-107 191-223 (239)
212 PF06305 DUF1049: Protein of u 39.9 55 0.0012 19.1 3.4 22 82-103 46-67 (68)
213 PF14193 DUF4315: Domain of un 39.9 72 0.0016 20.4 4.1 37 15-51 2-38 (83)
214 PF15070 GOLGA2L5: Putative go 39.6 2.5E+02 0.0055 24.3 12.6 70 11-85 33-102 (617)
215 KOG1655|consensus 39.6 58 0.0013 24.4 4.0 37 72-108 14-50 (218)
216 KOG0804|consensus 39.2 2.4E+02 0.0051 23.9 11.2 21 83-103 427-447 (493)
217 PRK09173 F0F1 ATP synthase sub 38.9 1.1E+02 0.0023 21.1 5.3 39 70-108 26-64 (159)
218 PF08227 DASH_Hsk3: DASH compl 38.8 75 0.0016 18.0 3.8 24 15-38 3-26 (45)
219 PRK07352 F0F1 ATP synthase sub 38.8 92 0.002 21.9 5.0 38 71-108 44-81 (174)
220 PF05010 TACC: Transforming ac 38.5 1.6E+02 0.0036 21.8 12.0 81 23-107 25-106 (207)
221 PF02388 FemAB: FemAB family; 38.4 2.1E+02 0.0046 23.0 8.0 34 74-107 270-303 (406)
222 PRK04863 mukB cell division pr 38.3 3.8E+02 0.0082 25.9 13.4 40 9-48 1008-1047(1486)
223 PF08912 Rho_Binding: Rho Bind 38.2 99 0.0021 19.2 4.5 29 76-104 2-30 (69)
224 COG2919 Septum formation initi 38.1 1.2E+02 0.0026 20.2 5.5 52 10-61 60-113 (117)
225 PRK14127 cell division protein 38.0 1.2E+02 0.0027 20.3 6.6 41 5-45 28-68 (109)
226 COG4372 Uncharacterized protei 37.8 2.4E+02 0.0052 23.5 11.4 40 9-48 139-178 (499)
227 TIGR03007 pepcterm_ChnLen poly 37.8 59 0.0013 26.5 4.3 49 58-106 142-190 (498)
228 PRK09973 putative outer membra 37.2 1.1E+02 0.0025 19.6 6.4 53 7-59 24-83 (85)
229 cd01107 HTH_BmrR Helix-Turn-He 37.1 1.2E+02 0.0025 19.7 5.7 32 69-100 74-105 (108)
230 PRK15365 type III secretion sy 37.0 1.3E+02 0.0028 20.1 10.5 81 13-95 8-91 (107)
231 KOG4674|consensus 36.4 4.4E+02 0.0096 26.2 11.6 46 64-109 945-990 (1822)
232 PRK13455 F0F1 ATP synthase sub 36.3 81 0.0017 22.4 4.4 38 71-108 52-89 (184)
233 PF06156 DUF972: Protein of un 36.1 1.3E+02 0.0028 20.0 7.3 47 3-49 11-57 (107)
234 PRK02793 phi X174 lysis protei 36.1 1E+02 0.0023 18.9 5.4 23 27-49 7-29 (72)
235 PRK14475 F0F1 ATP synthase sub 36.1 84 0.0018 22.0 4.4 40 69-108 33-72 (167)
236 COG2433 Uncharacterized conser 35.9 3E+02 0.0065 24.1 9.9 30 78-107 475-504 (652)
237 PRK05431 seryl-tRNA synthetase 35.9 2.4E+02 0.0052 23.0 10.6 29 75-103 71-99 (425)
238 PRK02119 hypothetical protein; 35.6 1.1E+02 0.0023 18.9 5.4 25 25-49 6-30 (73)
239 PF15397 DUF4618: Domain of un 35.4 2.1E+02 0.0045 22.1 8.6 32 70-101 74-105 (258)
240 PRK15365 type III secretion sy 35.4 1.4E+02 0.003 20.0 7.3 75 9-92 21-95 (107)
241 CHL00118 atpG ATP synthase CF0 35.4 1.2E+02 0.0026 21.0 5.0 37 71-107 47-83 (156)
242 PRK06231 F0F1 ATP synthase sub 35.2 85 0.0018 23.0 4.4 40 69-108 71-110 (205)
243 PF06810 Phage_GP20: Phage min 35.0 1.1E+02 0.0025 21.5 4.9 17 75-91 32-48 (155)
244 PRK08032 fliD flagellar cappin 34.9 59 0.0013 26.8 3.8 33 75-107 404-436 (462)
245 PF02403 Seryl_tRNA_N: Seryl-t 34.5 1.3E+02 0.0027 19.3 10.8 33 72-104 69-101 (108)
246 PF05064 Nsp1_C: Nsp1-like C-t 34.3 1.2E+02 0.0027 20.1 4.8 42 8-49 58-99 (116)
247 PF06386 GvpL_GvpF: Gas vesicl 34.2 1.1E+02 0.0023 22.8 4.9 56 33-91 58-113 (249)
248 COG3883 Uncharacterized protei 34.2 2.2E+02 0.0048 22.1 12.2 27 77-103 169-195 (265)
249 PRK04406 hypothetical protein; 34.2 1.2E+02 0.0025 18.9 5.4 24 26-49 9-32 (75)
250 COG0172 SerS Seryl-tRNA synthe 33.8 2.8E+02 0.006 23.1 8.2 74 28-104 29-102 (429)
251 PF02994 Transposase_22: L1 tr 33.8 1.3E+02 0.0028 24.1 5.6 37 70-106 144-180 (370)
252 PF05565 Sipho_Gp157: Siphovir 33.5 1.7E+02 0.0037 20.5 8.0 39 69-107 46-84 (162)
253 PTZ00007 (NAP-L) nucleosome as 33.2 1E+02 0.0023 24.7 4.9 29 1-29 31-59 (337)
254 PRK04325 hypothetical protein; 33.1 1.2E+02 0.0026 18.7 5.4 24 26-49 7-30 (74)
255 PF04065 Not3: Not1 N-terminal 33.1 2.2E+02 0.0047 21.6 9.5 92 7-98 45-150 (233)
256 PRK13453 F0F1 ATP synthase sub 33.0 1E+02 0.0022 21.8 4.4 40 69-108 41-80 (173)
257 PRK09039 hypothetical protein; 32.9 2.5E+02 0.0054 22.2 10.3 31 14-44 130-160 (343)
258 KOG0933|consensus 32.8 4.2E+02 0.0091 24.9 11.5 43 7-49 808-850 (1174)
259 COG1315 Uncharacterized conser 32.7 3.2E+02 0.0069 23.4 8.1 74 12-93 408-484 (543)
260 PRK09174 F0F1 ATP synthase sub 32.7 1.3E+02 0.0028 22.1 5.1 38 70-107 77-114 (204)
261 PF15205 PLAC9: Placenta-speci 32.5 1.3E+02 0.0028 18.8 4.8 35 64-98 23-57 (74)
262 PF03670 UPF0184: Uncharacteri 32.5 1.4E+02 0.003 19.2 4.7 32 72-103 28-59 (83)
263 TIGR00414 serS seryl-tRNA synt 32.5 2.7E+02 0.006 22.6 10.7 32 72-103 71-102 (418)
264 COG1675 TFA1 Transcription ini 32.4 49 0.0011 24.1 2.7 37 54-91 134-170 (176)
265 PF14662 CCDC155: Coiled-coil 32.3 2.1E+02 0.0046 21.2 11.1 26 26-51 48-73 (193)
266 KOG4571|consensus 32.1 1.4E+02 0.003 23.6 5.2 42 66-107 244-285 (294)
267 PF11068 YlqD: YlqD protein; 32.0 1.7E+02 0.0037 20.1 5.4 40 62-101 12-51 (131)
268 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.9 1.6E+02 0.0035 19.8 10.9 30 69-98 90-119 (132)
269 PF08826 DMPK_coil: DMPK coile 31.7 1.2E+02 0.0026 18.2 7.4 32 8-39 5-36 (61)
270 PF06810 Phage_GP20: Phage min 31.7 1.8E+02 0.004 20.4 8.4 36 15-50 14-49 (155)
271 PHA02047 phage lambda Rz1-like 31.7 1.6E+02 0.0034 19.6 7.1 59 5-66 39-97 (101)
272 PF07544 Med9: RNA polymerase 31.5 82 0.0018 19.8 3.3 24 65-88 23-46 (83)
273 PRK13454 F0F1 ATP synthase sub 31.1 1.6E+02 0.0034 21.1 5.1 38 70-107 55-92 (181)
274 PF04977 DivIC: Septum formati 30.9 1.2E+02 0.0026 17.9 5.7 36 12-47 15-50 (80)
275 PF13166 AAA_13: AAA domain 30.8 3.4E+02 0.0073 23.1 9.4 22 80-101 427-448 (712)
276 PF07240 Turandot: Stress-indu 29.9 1.3E+02 0.0028 19.4 4.1 62 8-69 11-74 (85)
277 PRK13182 racA polar chromosome 29.7 1.2E+02 0.0026 21.8 4.4 27 70-96 85-111 (175)
278 COG4026 Uncharacterized protei 29.6 2.7E+02 0.0058 21.5 9.8 34 74-107 174-207 (290)
279 PF05103 DivIVA: DivIVA protei 29.6 1.7E+02 0.0036 19.2 5.0 36 68-103 23-58 (131)
280 cd04787 HTH_HMRTR_unk Helix-Tu 29.5 1.8E+02 0.0039 19.5 5.6 36 69-104 78-113 (133)
281 PRK06798 fliD flagellar cappin 29.4 65 0.0014 26.5 3.2 31 76-106 378-408 (440)
282 PF09278 MerR-DNA-bind: MerR, 29.4 1.2E+02 0.0025 17.4 5.1 30 67-96 33-62 (65)
283 PTZ00464 SNF-7-like protein; P 29.3 87 0.0019 23.3 3.7 37 71-107 12-48 (211)
284 KOG2196|consensus 29.3 2.7E+02 0.0059 21.5 11.6 75 17-103 130-204 (254)
285 PRK14160 heat shock protein Gr 29.2 1.3E+02 0.0029 22.5 4.6 29 77-105 54-82 (211)
286 PRK08475 F0F1 ATP synthase sub 28.8 1.3E+02 0.0029 21.1 4.4 38 70-107 46-83 (167)
287 KOG2911|consensus 28.8 3.5E+02 0.0075 22.6 9.7 70 18-96 237-306 (439)
288 PF06717 DUF1202: Protein of u 28.6 1.7E+02 0.0038 23.1 5.2 37 69-105 144-180 (308)
289 KOG3129|consensus 28.6 1.2E+02 0.0027 23.0 4.3 29 18-46 18-46 (231)
290 PRK13461 F0F1 ATP synthase sub 28.3 2E+02 0.0044 19.7 5.4 38 70-107 29-66 (159)
291 PF06428 Sec2p: GDP/GTP exchan 28.3 55 0.0012 21.6 2.2 36 72-107 46-81 (100)
292 PHA02096 hypothetical protein 28.2 51 0.0011 21.4 1.9 37 52-88 19-55 (103)
293 PRK14158 heat shock protein Gr 28.2 1.9E+02 0.0041 21.3 5.2 40 68-107 38-77 (194)
294 PF15619 Lebercilin: Ciliary p 28.1 2.4E+02 0.0052 20.6 11.6 21 5-25 59-79 (194)
295 TIGR01144 ATP_synt_b ATP synth 27.9 1.9E+02 0.0042 19.4 5.4 37 71-107 20-56 (147)
296 TIGR03752 conj_TIGR03752 integ 27.6 3.8E+02 0.0082 22.6 11.3 84 7-103 59-142 (472)
297 PF12329 TMF_DNA_bd: TATA elem 27.5 1.5E+02 0.0034 18.2 5.5 39 69-107 32-70 (74)
298 PF03993 DUF349: Domain of Unk 27.5 1.4E+02 0.003 17.6 5.0 9 54-62 64-72 (77)
299 cd04776 HTH_GnyR Helix-Turn-He 27.1 1.9E+02 0.0041 19.1 4.8 31 75-105 78-108 (118)
300 PF14182 YgaB: YgaB-like prote 27.0 1.7E+02 0.0038 18.6 7.7 64 16-103 2-66 (79)
301 PF13600 DUF4140: N-terminal d 27.0 1.7E+02 0.0037 18.5 5.3 35 68-102 68-102 (104)
302 PRK13922 rod shape-determining 26.8 2.8E+02 0.006 20.8 6.3 41 10-50 72-112 (276)
303 PF05531 NPV_P10: Nucleopolyhe 26.7 1.7E+02 0.0037 18.4 4.3 24 75-98 40-63 (75)
304 COG0419 SbcC ATPase involved i 26.6 4.7E+02 0.01 23.4 11.5 46 6-51 528-575 (908)
305 PRK14143 heat shock protein Gr 26.6 2E+02 0.0043 21.8 5.2 40 68-107 65-104 (238)
306 PF12128 DUF3584: Protein of u 26.6 5.3E+02 0.011 24.0 12.0 52 56-107 878-929 (1201)
307 PRK13169 DNA replication intia 26.4 2.1E+02 0.0045 19.2 7.3 45 3-47 11-55 (110)
308 PF03920 TLE_N: Groucho/TLE N- 26.3 1.3E+02 0.0028 21.1 3.8 37 5-41 21-57 (135)
309 PRK13922 rod shape-determining 26.1 2.2E+02 0.0049 21.3 5.5 40 11-50 66-105 (276)
310 PF10975 DUF2802: Protein of u 26.1 1.6E+02 0.0035 17.9 4.0 46 28-74 5-53 (70)
311 PRK10884 SH3 domain-containing 26.0 2.7E+02 0.006 20.5 10.8 23 74-96 143-165 (206)
312 PF15458 NTR2: Nineteen comple 25.8 2.3E+02 0.005 21.5 5.5 32 68-99 206-237 (254)
313 PRK14471 F0F1 ATP synthase sub 25.8 1.6E+02 0.0035 20.3 4.4 37 71-107 33-69 (164)
314 PF11853 DUF3373: Protein of u 25.7 1E+02 0.0022 26.0 3.7 23 78-100 32-54 (489)
315 TIGR02047 CadR-PbrR Cd(II)/Pb( 25.6 2.1E+02 0.0046 19.1 5.7 37 67-103 76-112 (127)
316 PF09403 FadA: Adhesion protei 25.6 2.3E+02 0.0049 19.5 12.0 43 15-57 46-88 (126)
317 COG4942 Membrane-bound metallo 25.4 4E+02 0.0086 22.2 7.2 48 2-49 47-94 (420)
318 KOG3501|consensus 25.3 2.2E+02 0.0048 19.2 11.3 80 19-98 22-109 (114)
319 KOG0994|consensus 25.3 2.2E+02 0.0049 27.2 6.0 29 77-105 1267-1295(1758)
320 PF04111 APG6: Autophagy prote 25.1 3.4E+02 0.0073 21.3 12.0 29 77-105 106-134 (314)
321 PRK06664 fliD flagellar hook-a 25.1 92 0.002 27.2 3.5 33 75-107 598-630 (661)
322 PRK13676 hypothetical protein; 25.0 2E+02 0.0044 18.7 5.6 21 7-27 36-56 (114)
323 PF07439 DUF1515: Protein of u 24.8 1.9E+02 0.0041 19.6 4.3 41 20-60 39-80 (112)
324 PRK07737 fliD flagellar cappin 24.7 93 0.002 26.0 3.4 31 77-107 441-471 (501)
325 cd04770 HTH_HMRTR Helix-Turn-H 24.6 2.1E+02 0.0045 18.7 5.7 36 68-103 77-112 (123)
326 KOG3478|consensus 24.5 2.4E+02 0.0051 19.3 11.0 96 8-104 13-110 (120)
327 KOG4552|consensus 24.5 2.4E+02 0.0052 21.5 5.2 47 52-98 56-102 (272)
328 TIGR01010 BexC_CtrB_KpsE polys 24.3 1.4E+02 0.0031 23.3 4.3 31 76-106 169-199 (362)
329 PF09036 Bcr-Abl_Oligo: Bcr-Ab 24.1 1.9E+02 0.0042 18.3 4.0 24 80-103 29-52 (79)
330 PF04156 IncA: IncA protein; 24.0 2.6E+02 0.0057 19.6 10.3 30 16-45 83-112 (191)
331 TIGR02833 spore_III_AB stage I 24.0 2E+02 0.0044 20.4 4.6 51 45-95 98-149 (170)
332 PRK08307 stage III sporulation 23.9 1.9E+02 0.0041 20.5 4.5 51 45-95 99-150 (171)
333 TIGR01242 26Sp45 26S proteasom 23.9 1.7E+02 0.0038 22.8 4.7 34 71-104 7-40 (364)
334 PRK11530 hypothetical protein; 23.7 2.1E+02 0.0046 21.0 4.6 33 6-38 23-55 (183)
335 PF05667 DUF812: Protein of un 23.7 4.8E+02 0.01 22.5 12.2 39 10-51 443-481 (594)
336 COG0216 PrfA Protein chain rel 23.7 4E+02 0.0088 21.7 7.9 25 70-94 76-100 (363)
337 PRK14624 hypothetical protein; 23.7 1.3E+02 0.0027 20.4 3.3 17 9-25 8-24 (115)
338 TIGR00570 cdk7 CDK-activating 23.6 3.8E+02 0.0082 21.3 7.0 69 17-89 72-140 (309)
339 TIGR03321 alt_F1F0_F0_B altern 23.6 1.7E+02 0.0037 21.8 4.4 37 71-107 30-66 (246)
340 PRK09173 F0F1 ATP synthase sub 23.5 2.5E+02 0.0055 19.2 6.1 50 56-105 19-68 (159)
341 PRK13182 racA polar chromosome 23.5 2.7E+02 0.0058 20.1 5.2 34 74-107 82-115 (175)
342 KOG0963|consensus 23.1 5.2E+02 0.011 22.7 10.5 49 9-57 116-164 (629)
343 KOG0804|consensus 22.9 4.7E+02 0.01 22.1 10.7 32 77-108 414-445 (493)
344 cd04786 HTH_MerR-like_sg7 Heli 22.8 2.5E+02 0.0054 19.0 5.7 39 67-105 75-113 (131)
345 PF06825 HSBP1: Heat shock fac 22.8 83 0.0018 18.5 2.0 21 76-96 27-47 (54)
346 PTZ00446 vacuolar sorting prot 22.7 3.2E+02 0.0069 20.1 5.7 34 67-100 24-57 (191)
347 PRK10722 hypothetical protein; 22.7 3.2E+02 0.0069 21.1 5.7 44 8-51 159-206 (247)
348 PF07195 FliD_C: Flagellar hoo 22.7 2.3E+02 0.0049 20.9 4.9 33 69-101 192-224 (239)
349 PF05478 Prominin: Prominin; 22.6 5.5E+02 0.012 22.8 12.2 93 11-105 177-274 (806)
350 KOG0161|consensus 22.6 8E+02 0.017 24.7 12.2 91 5-97 1496-1589(1930)
351 PRK14472 F0F1 ATP synthase sub 22.5 2.8E+02 0.0061 19.4 5.5 40 69-108 41-80 (175)
352 PRK14148 heat shock protein Gr 22.5 2.9E+02 0.0064 20.3 5.3 35 72-106 42-76 (195)
353 PRK13729 conjugal transfer pil 22.5 1.9E+02 0.0042 24.4 4.8 10 74-83 80-89 (475)
354 TIGR00373 conserved hypothetic 22.5 46 0.00099 23.4 1.0 24 59-82 134-157 (158)
355 PRK10803 tol-pal system protei 22.5 2.2E+02 0.0048 21.6 4.8 31 74-104 58-88 (263)
356 PF06518 DUF1104: Protein of u 22.3 2E+02 0.0043 18.7 3.9 39 52-91 8-47 (93)
357 PF12210 Hrs_helical: Hepatocy 22.2 2.4E+02 0.0053 18.6 6.0 35 9-43 55-89 (96)
358 PRK14151 heat shock protein Gr 22.1 2E+02 0.0044 20.7 4.4 37 70-106 20-56 (176)
359 PF12958 DUF3847: Protein of u 22.1 1.7E+02 0.0037 18.8 3.5 20 77-96 15-34 (86)
360 cd07605 I-BAR_IMD Inverse (I)- 22.0 3.5E+02 0.0075 20.3 9.5 59 1-65 14-72 (223)
361 PF12126 DUF3583: Protein of u 21.9 4.2E+02 0.0091 21.2 8.4 8 59-66 89-96 (324)
362 cd00176 SPEC Spectrin repeats, 21.9 2.6E+02 0.0056 18.8 6.9 15 9-23 35-49 (213)
363 PRK14154 heat shock protein Gr 21.8 2.2E+02 0.0047 21.3 4.6 32 75-106 57-88 (208)
364 PRK14473 F0F1 ATP synthase sub 21.7 2.8E+02 0.0061 19.1 5.4 40 69-108 31-70 (164)
365 COG1792 MreC Cell shape-determ 21.5 3.5E+02 0.0075 20.9 5.8 43 9-51 68-110 (284)
366 PF15397 DUF4618: Domain of un 21.5 3.2E+02 0.0068 21.2 5.5 55 54-108 48-105 (258)
367 PF08286 Spc24: Spc24 subunit 21.3 42 0.00092 22.3 0.6 56 10-66 9-76 (118)
368 PRK00888 ftsB cell division pr 21.3 2.5E+02 0.0054 18.4 5.2 34 72-105 29-62 (105)
369 PF04799 Fzo_mitofusin: fzo-li 21.3 3.3E+02 0.0071 19.8 5.2 24 67-90 117-140 (171)
370 PF09548 Spore_III_AB: Stage I 21.2 2.6E+02 0.0055 19.7 4.7 48 48-95 101-149 (170)
371 PF07061 Swi5: Swi5; InterPro 21.1 1.8E+02 0.0039 18.4 3.5 26 74-99 4-29 (83)
372 smart00435 TOPEUc DNA Topoisom 20.5 4.9E+02 0.011 21.4 9.3 32 20-51 276-307 (391)
373 PRK08724 fliD flagellar cappin 20.5 1.6E+02 0.0035 25.9 4.1 23 4-26 490-512 (673)
374 PRK14163 heat shock protein Gr 20.5 2.3E+02 0.0049 21.3 4.4 43 65-107 35-77 (214)
375 PRK12765 flagellar capping pro 20.4 1.3E+02 0.0028 25.8 3.5 33 75-107 530-562 (595)
376 cd04785 HTH_CadR-PbrR-like Hel 20.3 2.7E+02 0.0059 18.4 5.7 37 67-103 76-112 (126)
377 KOG0639|consensus 20.2 2.7E+02 0.0059 24.2 5.2 37 5-41 21-57 (705)
378 cd01108 HTH_CueR Helix-Turn-He 20.1 2.8E+02 0.006 18.4 5.7 37 67-103 76-112 (127)
379 TIGR01242 26Sp45 26S proteasom 20.0 3.5E+02 0.0076 21.1 5.7 35 74-108 3-37 (364)
No 1
>PRK09343 prefoldin subunit beta; Provisional
Probab=99.95 E-value=2.3e-27 Score=162.51 Aligned_cols=108 Identities=20% Similarity=0.386 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhH
Q psy14230 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRI 79 (110)
Q Consensus 1 m~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~ 79 (110)
|+.+|||++|+.+++|+.++++++.+..+++.++.+++|++.|++||+.++ |++|||+|||+||++|+++|+.+|++|+
T Consensus 1 ~~~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~ 80 (121)
T PRK09343 1 MAENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERK 80 (121)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 80 DYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 80 e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
++|+.++++++++...+++++.+++..|.
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988775
No 2
>KOG3478|consensus
Probab=99.95 E-value=4e-27 Score=157.57 Aligned_cols=105 Identities=46% Similarity=0.688 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHH
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i 82 (110)
.++..++..++.|++||..+.+....|+.+++++.||+.|++||+.++ |++|||++|||||+++.+||..+|.+|++||
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 83 SAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 83 ~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+++++|++.++.+.++++.+.+..++
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v~ 107 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAVI 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988765
No 3
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.95 E-value=7e-27 Score=157.44 Aligned_cols=104 Identities=29% Similarity=0.398 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYIS 83 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~ 83 (110)
|||++|+.+++|++++++++.+.++++.++.+++||+.|++||+.++ |++|||+||||||++|+++|.++|++|+++|+
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE 80 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 84 AELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 84 ~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
..++++++++..+.+++.+++..|.
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875
No 4
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-26 Score=158.32 Aligned_cols=107 Identities=29% Similarity=0.421 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHH
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRID 80 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e 80 (110)
|.++||++|+.+++|++|+++++.+..++++++++++|++.|++||+.++ |++|||.||++||+.++++|+..|++|+|
T Consensus 1 ~~~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E 80 (119)
T COG1382 1 MEQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKE 80 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 81 YISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+|+.++++|+++...+++++.+++..|.
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875
No 5
>KOG4098|consensus
Probab=99.92 E-value=1.3e-24 Score=149.47 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYIS 83 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~ 83 (110)
-|+.-+..+++|+.++++++.+.+.+..|+.+++||..|+++|+.+| +++||||||||||++|+.+++|.|..+.++|+
T Consensus 13 ~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~ 92 (140)
T KOG4098|consen 13 EPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIE 92 (140)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHH
Confidence 46778899999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcch
Q psy14230 84 AELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 84 ~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
..++.+..++..+.+++++|++.
T Consensus 93 ~~i~~l~~qL~~k~kElnkfk~~ 115 (140)
T KOG4098|consen 93 KVIKKLTDQLVQKGKELNKFKKD 115 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999864
No 6
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.92 E-value=1.6e-24 Score=144.70 Aligned_cols=100 Identities=37% Similarity=0.524 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELK 87 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~ 87 (110)
+|+.+.+|+.|+.+++.+.++++.++++++||++|++||+.++ |++||++||+|||+.|+++|.+.|+.++++|+.+++
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhc
Q psy14230 88 RHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 88 ~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+++++++.+++++.+++..|+
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875
No 7
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.85 E-value=6.6e-21 Score=125.74 Aligned_cols=99 Identities=29% Similarity=0.413 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
|+.+++|+.++.++..+.+++..++.++++++.|++||+.++ |++||++||++||+.|++++.+.|+.+++.++.+++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhc
Q psy14230 89 HDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 89 l~~~~~~~~~~l~e~k~~l~ 108 (110)
+++.+..+.+++.++++.|.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998874
No 8
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.50 E-value=2.1e-13 Score=92.56 Aligned_cols=99 Identities=23% Similarity=0.347 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------------------------CchhHHhhc-chhH
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK------------------------DGEVYKLIG-PILV 64 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~------------------------d~~~yKlVG-~vLV 64 (110)
++....|++++.+++.+.+.+.++...+.|++.++++|+.++ +.+||..|| |++|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence 567889999999999999999999999999999999999985 357899999 9999
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+.+.++|.+.+++|+++++++++.+++.+..+..++..++..+.
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764
No 9
>KOG1760|consensus
Probab=99.41 E-value=5.4e-12 Score=86.32 Aligned_cols=101 Identities=10% Similarity=0.310 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-C--chhHHhhcchhHhccHHHHHHHHHHhHHHH
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-D--GEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d--~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i 82 (110)
.-+-|+.||+|.++.++...+...+.....++..++.|.+|++.+| | .++|+ ||.||+..+.+.+...|+...+.+
T Consensus 15 t~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~-vGdvF~~~~~~~~~~~LEe~ke~l 93 (131)
T KOG1760|consen 15 TFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFK-VGDVFIHVKLDKLQDQLEEKKETL 93 (131)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcccccccee-hhhhheeccHHHHHHHHHHHHHHH
Confidence 4457999999999999999999999999999999999999999999 8 68899 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 83 SAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 83 ~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.++++.++.........|.+++..|
T Consensus 94 ~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 94 EKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876
No 10
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.36 E-value=1.2e-11 Score=85.91 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CchhHHhhc-------------------
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK----DGEVYKLIG------------------- 60 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~----d~~~yKlVG------------------- 60 (110)
...|+++.....|++++.+++.+.+++..+...+.++..++++|+.++ +..+|..+|
T Consensus 3 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~l 82 (140)
T PRK03947 3 ESEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSL 82 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEc
Confidence 346789999999999999999999999999999999999999998775 224444455
Q ss_pred --chhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 61 --PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 61 --~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
|++|+.|.++|.+.+++|++.+++.++.+.+.+..+.++++.+...+.
T Consensus 83 G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 83 GAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887764
No 11
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.24 E-value=1.3e-10 Score=79.22 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhh-----------------------cchhHh
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI-----------------------GPILVK 65 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlV-----------------------G~vLV~ 65 (110)
++...+|++++++++.+.+++..+...+.+++.+++.|+.++ +..+..+| +|++|+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 567888999999999999999999999999999999999998 75677777 889999
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.|.++|.+.+++|++.+++.++.+++.+..+.+++..+...+.
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887764
No 12
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.07 E-value=1.6e-09 Score=74.08 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------------------------CchhHHhhcchhH
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-------------------------DGEVYKLIGPILV 64 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-------------------------d~~~yKlVG~vLV 64 (110)
+.....+++++.+++.+..++..+...+.|+..+++.|+.+. +++|+.+-+|++|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence 456778899999999999999999999999999999888773 5689998899999
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+.+.++|.+.+++|++.+++.++.+++.+..+..+++.+...+.
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887664
No 13
>PRK14011 prefoldin subunit alpha; Provisional
Probab=98.65 E-value=5.5e-07 Score=63.50 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhH--------------------Hhhc-chhH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVY--------------------KLIG-PILV 64 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~y--------------------KlVG-~vLV 64 (110)
.++|+.+..++.++++.+.+...+..+..-.+++..+++.|+.++ +..+. =-|| |++|
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence 568999999999999999999999999999999999999998886 53222 2233 5677
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+.|.++|+..++.|+++|++..+.+...++++...++++...|
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999888655
No 14
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=7.4e-07 Score=62.93 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-Cc---hhHHhhc------------------
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DG---EVYKLIG------------------ 60 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~---~~yKlVG------------------ 60 (110)
....+++++..++++.++.+++.+.+++..+..-++|...++++|+.+. .. .+.=-||
T Consensus 2 ~~~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~ 81 (145)
T COG1730 2 AQTQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVS 81 (145)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEE
Confidence 4457789999999999999999999999999999999999999999987 33 1111133
Q ss_pred ---chhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 61 ---PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 61 ---~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
|+-|+.|.++|.+.+++|++.|++.+..++..+.++...+..+...+
T Consensus 82 iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 82 IGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred cCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455688999999999999999999999999999999888776554
No 15
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=98.04 E-value=8.6e-06 Score=54.58 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----C--------------------chhHHhhc-chhHhccHHHHHHHH
Q psy14230 21 KEYQKVLNQRQLLSAQLNENESVQKELDLMK----D--------------------GEVYKLIG-PILVKQEMEEAKQNV 75 (110)
Q Consensus 21 ~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~----d--------------------~~~yKlVG-~vLV~~~~~ea~~~l 75 (110)
++++.+..++..+.....|+..+.+.|+.+. + .+||=.|| +++|+.|.++|...+
T Consensus 3 ~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l 82 (120)
T PF02996_consen 3 EELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFL 82 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHH
Confidence 3455666666666666666666666666542 1 22222233 567777999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 76 KKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
++|++.++..++.+...+..+..++..+...+.
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988776653
No 16
>KOG3501|consensus
Probab=97.58 E-value=0.0036 Score=42.03 Aligned_cols=87 Identities=11% Similarity=0.234 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhH-------HHHHHHHHH
Q psy14230 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRI-------DYISAELKR 88 (110)
Q Consensus 17 q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~-------e~i~~~i~~ 88 (110)
..-|+++....-++.++.-.+.-...+..|+..+- +..+|..||.-|+..|+.-+...++..+ +.|++.-.-
T Consensus 13 ~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~IeaLqkkK~Y 92 (114)
T KOG3501|consen 13 VDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIEALQKKKTY 92 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34556666677788888888888888889998888 8899999999999998865555555433 333344444
Q ss_pred HHHHHHHHHHHHHhh
Q psy14230 89 HDDTIATLDTKQDTH 103 (110)
Q Consensus 89 l~~~~~~~~~~l~e~ 103 (110)
+++...+.+.-++++
T Consensus 93 lEk~v~eaE~nLrel 107 (114)
T KOG3501|consen 93 LEKTVSEAEQNLREL 107 (114)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 17
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0028 Score=43.48 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C-CchhHHhhcchhHhccHHHHHHHHHHhHH
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM-K-DGEVYKLIGPILVKQEMEEAKQNVKKRID 80 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l-~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e 80 (110)
++.=.++|+..++++.+-.+.+.+..++...+.=++|++.+-+.=..- . +..+|+ +---=+...+++-++.++.|+.
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk-~~k~~~~~eL~er~E~Le~ri~ 87 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVK-VSKEEAVDELEERKETLELRIK 87 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999999999999999999999887764333 3 778888 4555667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 81 YISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.|+++.+++..++++++.++...
T Consensus 88 tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 18
>PRK01203 prefoldin subunit alpha; Provisional
Probab=97.46 E-value=0.0034 Score=43.63 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---C---------------------chhHHhhc-chhHh
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK---D---------------------GEVYKLIG-PILVK 65 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~---d---------------------~~~yKlVG-~vLV~ 65 (110)
..+.+|+-++++.+.+.+++..+..-.+++...++.|+.++ + .++-- || |++|+
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVd-IGTGy~VE 82 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVP-IGSGVYIA 82 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEE-cCCCeEEE
Confidence 45778899999999999999999999999999999987752 2 12222 33 57778
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.+.+++.+.|+++++.|+.-+.......+.++..+.++-
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877777777777776653
No 19
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=96.77 E-value=0.039 Score=36.41 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHhhcchhHhccHHHHHHHHHHhHH
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK--DGEVYKLIGPILVKQEMEEAKQNVKKRID 80 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~--d~~~yKlVG~vLV~~~~~ea~~~l~~r~e 80 (110)
+++..++|..-.+++.+.++.+.+..++.....=+.|...+-+.=.-.- +++.++ .---=+.-.+++-.+.++.+++
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~-~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVK-QEKEEARTELKERLETIELRIK 80 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888999999999999999999998888887743332222 332222 3333344567888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 81 YISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.+++.++.+.+++.++..++.++++
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988763
No 20
>PRK09343 prefoldin subunit beta; Provisional
Probab=96.34 E-value=0.11 Score=35.36 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHhhcchhHhccHHHHHHHHHHhHHH
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK--DGEVYKLIGPILVKQEMEEAKQNVKKRIDY 81 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~--d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~ 81 (110)
+.-..+|..-.+++.+..+.+.+..++...+.=+.|.+.+-+.-.--. +++..+ .--.=+..++.+-.+.++.+++.
T Consensus 11 ~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~-qd~~e~~~~l~~r~E~ie~~ik~ 89 (121)
T PRK09343 11 AQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVK-VDKTKVEKELKERKELLELRSRT 89 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhh-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888999999999999999999999999998876655555 444444 55556677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 82 ISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 82 i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
+++..+.+.+++.+++.++.++-..
T Consensus 90 lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 90 LEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887543
No 21
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=96.23 E-value=0.12 Score=34.36 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHhhcchhHhccHHHHHHHHHHhHH
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK--DGEVYKLIGPILVKQEMEEAKQNVKKRID 80 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~--d~~~yKlVG~vLV~~~~~ea~~~l~~r~e 80 (110)
+++...+|..-.+++.+..+.+.+..++...+.=+.|.+.+-+.-.-.. +++..+ -.-.=+..++.+-.+.++.+++
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~-~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVK-TDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhhe-ecHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777778888888888888888888888888887755444443 444333 3333345677888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 81 YISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+++.++.+.+++.+++.+++++
T Consensus 85 ~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 85 TLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888765
No 22
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=96.13 E-value=0.075 Score=34.31 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHH
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i 82 (110)
.+..+++..-.+|+.+..++..+..++..+..-+.|.+.+-++-...- =..||=....-=+.....+-...++..++.+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999998844433 2345544666667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14230 83 SAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 83 ~~~i~~l~~~~~~~~~~l~e~ 103 (110)
++.++.+.+++.++.+.+.+.
T Consensus 82 ~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765
No 23
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=95.68 E-value=0.041 Score=37.89 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHH---hhcchhHhccH-----------HHHH------
Q psy14230 14 NLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYK---LIGPILVKQEM-----------EEAK------ 72 (110)
Q Consensus 14 ~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yK---lVG~vLV~~~~-----------~ea~------ 72 (110)
..+++++.+++.+...+..+..++......+.++...- .=.-++ --++++|+.+. +.+.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g 85 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAG 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCC
Confidence 45667777777777777777777777777777776653 212222 12345555431 2221
Q ss_pred ----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 73 ----QNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 73 ----~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..++.-++++++.++.+++.+..+.+.+..+++.+
T Consensus 86 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 124 (140)
T PRK03947 86 YSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRI 124 (140)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26677777777777777777777777777766654
No 24
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=95.64 E-value=0.18 Score=33.50 Aligned_cols=85 Identities=14% Similarity=0.323 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCC-Cc-hhHHhhcc-hhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLL----SAQLNENESVQKELDLMK-DG-EVYKLIGP-ILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~l----e~q~~E~~~v~eeL~~l~-d~-~~yKlVG~-vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
++.--.+|..|-..+..+ ...-.+.-.+-.++..-- +. .|=-++|. ..+.++++.++..|..|++|+...+..
T Consensus 7 Wq~w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~t 86 (99)
T PF13758_consen 7 WQTWEAEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIET 86 (99)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 223334444555555433 33 33333443 677899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14230 89 HDDTIATLDTKQ 100 (110)
Q Consensus 89 l~~~~~~~~~~l 100 (110)
+++++..-+.++
T Consensus 87 leKql~~aE~kl 98 (99)
T PF13758_consen 87 LEKQLEAAENKL 98 (99)
T ss_pred HHHHHHHHHHhc
Confidence 999999888765
No 25
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.075 Score=37.59 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhc---chhHhccHH--------------------
Q psy14230 14 NLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIG---PILVKQEME-------------------- 69 (110)
Q Consensus 14 ~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG---~vLV~~~~~-------------------- 69 (110)
...+++..+++-+.+++..|..++...+..+.|+...- .=.-++..| .+||+...+
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg 85 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSG 85 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCc
Confidence 35678889999999999999999999999999999887 668888899 799998431
Q ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 -EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 -ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
-|....+.-+++|.++++.+++.+.+++..+.++-..+
T Consensus 86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~ 124 (145)
T COG1730 86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRI 124 (145)
T ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999998876554
No 26
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=94.82 E-value=0.6 Score=29.73 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
++.+.|.+...-..+..+...+..+...+..+...+.++..+..--+.+
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~ 57 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPF 57 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4567888999999999999999999988888888887777665433333
No 27
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=94.59 E-value=0.16 Score=34.17 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhh-----cchhHhccH--------HHHH-----------
Q psy14230 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLI-----GPILVKQEM--------EEAK----------- 72 (110)
Q Consensus 17 q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlV-----G~vLV~~~~--------~ea~----------- 72 (110)
+++..+++.+..++..+..++.+....+.++...- .+...+ .++||+.+. .+..
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~--~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~ 79 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAI--ETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY 79 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Confidence 56788888888999999999999999999887763 222323 335664422 1111
Q ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 73 --QNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 73 --~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..++.-++++++.++.+++++..+.+.+..+++.+
T Consensus 80 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 116 (126)
T TIGR00293 80 VEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRA 116 (126)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999988887654
No 28
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=93.48 E-value=1.5 Score=29.15 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=35.5
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
....++.+..++++++.+++.++.+..++..+...++...
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677889999999999999999999999999999888754
No 29
>PRK11637 AmiB activator; Provisional
Probab=92.03 E-value=5.5 Score=32.14 Aligned_cols=39 Identities=10% Similarity=0.282 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
...+..++..+..++.+++.++.++.++++++...++.+
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666555443
No 30
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=91.94 E-value=0.3 Score=28.01 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
|..||++.|..--+.|+..++.++.+|.+++++-+.+
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998875543
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=91.33 E-value=7.1 Score=33.95 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 17 q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
..+...+..+...+..+...+.+.+..+++|.... .+|=. -|.-|-+.-..++.......++.++.++..+...+..+
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~-~~Cp~-c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l 478 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAK-GKCPV-CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKL 478 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCC-CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666667777777777766543 22211 34444444455666667777777777777777666666
Q ss_pred HHHHHhh
Q psy14230 97 DTKQDTH 103 (110)
Q Consensus 97 ~~~l~e~ 103 (110)
.+++..+
T Consensus 479 ~~~~~~~ 485 (880)
T PRK03918 479 RKELREL 485 (880)
T ss_pred HHHHHHH
Confidence 6555443
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=90.09 E-value=8 Score=33.64 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~ 97 (110)
...+..++..+..++..+...+.+++
T Consensus 309 ~~~l~~~~~~l~~~~~~l~~~l~~~e 334 (880)
T PRK03918 309 LREIEKRLSRLEEEINGIEERIKELE 334 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=89.99 E-value=4.4 Score=35.37 Aligned_cols=90 Identities=14% Similarity=0.274 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHH
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRH 89 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l 89 (110)
..-..+..++..+..+...+..+.+.+..+...++++..+= +.+|+- -|.-|-..+..+....+...+..+...++.+
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~-C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l 487 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE-CGQPVEGSPHVETIEEDRERVEELEAELEDL 487 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCCcCCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 33345677788888888888888999999999999988533 556643 4444444444444444444455554455555
Q ss_pred HHHHHHHHHHHH
Q psy14230 90 DDTIATLDTKQD 101 (110)
Q Consensus 90 ~~~~~~~~~~l~ 101 (110)
+..+.++.++..
T Consensus 488 e~~l~~~~~~~e 499 (880)
T PRK02224 488 EEEVEEVEERLE 499 (880)
T ss_pred HHHHHHHHHHHH
Confidence 544444444444
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.91 E-value=7.2 Score=29.74 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKEL 47 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL 47 (110)
+.|..+....+.+..++..+..+......++.+..-++.=+.++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEI 71 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555444444433333
No 35
>PRK11637 AmiB activator; Provisional
Probab=89.53 E-value=8.1 Score=31.21 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
...+..++.+++.++.+|..++..+....+.+.
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544443
No 36
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.29 E-value=6.8 Score=27.33 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
.+..|+..|+.+++..++.+.....++.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 37
>PRK00736 hypothetical protein; Provisional
Probab=88.01 E-value=2.3 Score=26.14 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
|.++.+..|+.++.|.+..++.|++.+..-++++..++..+.
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888888888888888888877777766553
No 38
>KOG3048|consensus
Probab=87.70 E-value=8.1 Score=27.50 Aligned_cols=97 Identities=16% Similarity=0.280 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-Cc--------hhH------------Hhhc-chh
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DG--------EVY------------KLIG-PIL 63 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~--------~~y------------KlVG-~vL 63 (110)
|+++-...++|.+=-.-++.-.+.+.-......|+-.+++.+..-. +. ..| ==|| |-+
T Consensus 15 leQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYy 94 (153)
T KOG3048|consen 15 LEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYY 94 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceeccccceeEeccCceE
Confidence 4556666655554333333333444555556666666666665543 31 122 1133 457
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
|+.|.++|+...++++++|.++++.++.-+++...-...
T Consensus 95 VEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~ 133 (153)
T KOG3048|consen 95 VEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRAS 133 (153)
T ss_pred EeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999988877654443
No 39
>PRK00295 hypothetical protein; Provisional
Probab=86.75 E-value=3 Score=25.60 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.++.+..|+.++.|.+..++.|++.+..-++++..++..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~ 43 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMA 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888877777766553
No 40
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.75 E-value=2.9 Score=25.61 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.++.+..|+.++.|.+..++.|+..+..-+.++..++..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777776666554
No 41
>KOG3313|consensus
Probab=86.30 E-value=7.2 Score=28.62 Aligned_cols=91 Identities=19% Similarity=0.338 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----C----------------------chhHHhhc-
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-----D----------------------GEVYKLIG- 60 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-----d----------------------~~~yKlVG- 60 (110)
+|..+.+|.-+. .++.+++..+.+.+-+.+.-++=+..+- + .+||=.+|
T Consensus 42 ~~E~~~kYkfme---~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGA 118 (187)
T KOG3313|consen 42 LQERYGKYKFME---ASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGA 118 (187)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecc
Confidence 455555555444 3456777777777777776665443321 1 23333444
Q ss_pred chhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 61 PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 61 ~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
+|+++-+.+||...|++++....+.++.++..+.=+..++..
T Consensus 119 nVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTT 160 (187)
T KOG3313|consen 119 NVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTT 160 (187)
T ss_pred eeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcee
Confidence 688888999999999999999999999988887776666543
No 42
>PRK14011 prefoldin subunit alpha; Provisional
Probab=86.10 E-value=2 Score=30.21 Aligned_cols=93 Identities=16% Similarity=0.077 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-hhHHhhcchhHhccH-----------H----------HHH
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDG-EVYKLIGPILVKQEM-----------E----------EAK 72 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~-~~yKlVG~vLV~~~~-----------~----------ea~ 72 (110)
+++++...++.+..+.+.|..+++-++.+..++...-++ .-..-=.++||+.+- + -+.
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VE 83 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLE 83 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEE
Confidence 456677777777788888888888888877777543211 011112455555522 1 244
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.+++.-++|+++.++.+++....+...++++...+
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~ 118 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEI 118 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888888877776654
No 43
>PHA01750 hypothetical protein
Probab=85.99 E-value=3.8 Score=25.44 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=33.8
Q ss_pred HhccHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 64 VKQEME-EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 64 V~~~~~-ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+++... -+.+.+...++.+..+++.+.....+++.+..+++.++
T Consensus 28 IKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 28 IKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345544 44556778889999999999988888888888887765
No 44
>PRK04325 hypothetical protein; Provisional
Probab=85.56 E-value=3.5 Score=25.75 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
..+.+..|+.++.|.+..|+.|++.+..-++++..++..+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~ 47 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR 47 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888889999998888888888888888887776653
No 45
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=85.44 E-value=13 Score=27.71 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=25.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
.+-+...+.|.++.+..+..|+..+..++..+..++..
T Consensus 182 ~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 182 EEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777777777777777766654
No 46
>PRK01156 chromosome segregation protein; Provisional
Probab=84.89 E-value=27 Score=30.77 Aligned_cols=84 Identities=7% Similarity=0.071 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 95 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~ 95 (110)
+..+.....++.+.+..+...+.+...+..+|. . ..+|=.-.+|.= .--..+........++.++.+++.+++.+..
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~-~~~Cp~c~~~~~-~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~ 494 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSRNMEMLN-G-QSVCPVCGTTLG-EEKSNHIINHYNEKKSRLEEKIREIEIEVKD 494 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-CCCCCCCCCcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555554444 2 122322111111 2223444555555555666666655555555
Q ss_pred HHHHHHh
Q psy14230 96 LDTKQDT 102 (110)
Q Consensus 96 ~~~~l~e 102 (110)
+.+++..
T Consensus 495 l~~~~~~ 501 (895)
T PRK01156 495 IDEKIVD 501 (895)
T ss_pred HHHHHHH
Confidence 5544443
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.80 E-value=20 Score=29.46 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
......++.++..|+.+++.++..+.+++....+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~ 331 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE 331 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777778888888887777777755554443
No 48
>COG5293 Predicted ATPase [General function prediction only]
Probab=83.71 E-value=20 Score=30.24 Aligned_cols=98 Identities=18% Similarity=0.312 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH-hccCCC--chhHHhhcch---hHhccHH
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNE--------------NESVQKE-LDLMKD--GEVYKLIGPI---LVKQEME 69 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E--------------~~~v~ee-L~~l~d--~~~yKlVG~v---LV~~~~~ 69 (110)
+.-++.|...-+++.++.+....+..+..| .+.-+.+ ...-+| .++|--||.. .|+++.+
T Consensus 244 ~~tln~f~~~a~~y~e~ee~vn~v~~~I~e~~n~~i~~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e 323 (591)
T COG5293 244 QATLNTFDFHAQDYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFE 323 (591)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHH
Confidence 334455555555555555555555555555 2333333 122123 2889888855 4777777
Q ss_pred HHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 EAKQ----NVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 ea~~----~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
++.. .++.|-+|+..+|.+++.-+++...+++++.+..
T Consensus 324 ~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~r 365 (591)
T COG5293 324 HVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRR 365 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7754 5678999999999999999988888888776543
No 49
>PRK04406 hypothetical protein; Provisional
Probab=83.47 E-value=4.7 Score=25.26 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.++.+..|+.++.|.+..|+.|++.+..-++++..++..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888877776654
No 50
>KOG0976|consensus
Probab=83.47 E-value=34 Score=30.99 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CC-C-chhHHhhcchhHhccHHHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL--------MK-D-GEVYKLIGPILVKQEMEEAKQNVK 76 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~--------l~-d-~~~yKlVG~vLV~~~~~ea~~~l~ 76 (110)
.++-...+..+.+..+.+.+..-++.+++++.|++.-++++.. +. . ..||+ ||..|- ++-+++..++
T Consensus 106 sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~-~~~~L~--nk~~~lt~~~ 182 (1265)
T KOG0976|consen 106 SQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFM-IGEDLH--DKNEELNEFN 182 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH-HHHHHh--hhhhHHhHHH
Confidence 3455566777788888889999999999999988877765532 22 2 36777 888774 3445555555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
........+..+.+++...+-+++.
T Consensus 183 ~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 183 MEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544
No 51
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.46 E-value=5 Score=24.89 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+.++.+..|+.++.|.+..++.|++.+..-++++..++..+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888877777766553
No 52
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.26 E-value=5.3 Score=26.51 Aligned_cols=56 Identities=11% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCC-CchhHHhhcc
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENE-SVQKELDLMK-DGEVYKLIGP 61 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~-~v~eeL~~l~-d~~~yKlVG~ 61 (110)
..++...-.+...++++-..|..++..|.+...-.+ .+-++|.... |.++|+++.|
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy~~~~~ 90 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFYRIVPD 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEEEeCCC
Confidence 344444555555555555666666666655322222 4667788888 8899987766
No 53
>PRK02119 hypothetical protein; Provisional
Probab=83.11 E-value=5.1 Score=24.93 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.++.+..|+.++.|.+..++.|+..+..-++++..++..+.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888877777766553
No 54
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=82.45 E-value=9.1 Score=26.52 Aligned_cols=87 Identities=17% Similarity=0.268 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH-HHhccCC-C---------------
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVL-------------NQRQLLSAQLNENESVQ-KELDLMK-D--------------- 52 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~-------------~~~~~le~q~~E~~~v~-eeL~~l~-d--------------- 52 (110)
++|||.++-..++.-.++..+..+. +.+..+..++++.+.-. ..=+-.+ |
T Consensus 3 e~i~~~L~pi~ekLisIrR~L~~~~t~~k~~~~~~~~~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~gQ~~l~~L 82 (134)
T PF10303_consen 3 EPISPELQPIYEKLISIRRSLLSLNTRSKFSDSSEESSSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPGGQAVLNGL 82 (134)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcchHHHHHHH
Confidence 4678888888888888888887764 55566666666666555 2211112 1
Q ss_pred -chhHHhhcchhHhcc----HHHHHHHHHHhHHHHHHHHHHH
Q psy14230 53 -GEVYKLIGPILVKQE----MEEAKQNVKKRIDYISAELKRH 89 (110)
Q Consensus 53 -~~~yKlVG~vLV~~~----~~ea~~~l~~r~e~i~~~i~~l 89 (110)
+.||.+++.++.... +++....+=.++-.|...+++|
T Consensus 83 Ld~C~~li~dl~~~~~~~~~~~~~l~~iY~~L~~ik~~LE~L 124 (134)
T PF10303_consen 83 LDDCFDLIEDLLERKGEEIEVDPSLQPIYDQLIDIKNTLENL 124 (134)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 468888888888765 4556666666676777666665
No 55
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=81.51 E-value=22 Score=27.92 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-Cc----hhHHhhcchhHhccHHHHHHHHHHh---
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DG----EVYKLIGPILVKQEMEEAKQNVKKR--- 78 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~----~~yKlVG~vLV~~~~~ea~~~l~~r--- 78 (110)
..++....+|+....++..+...+..-...+......++.+-.-. +. ..|=..|..+...=..++.|.+..+
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~ 163 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEG 163 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcccc
Confidence 468889999999999999999999999999988888888876654 32 4555566666665555555555443
Q ss_pred -------HHHHHHHHHHHHHHHHHHHH
Q psy14230 79 -------IDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 79 -------~e~i~~~i~~l~~~~~~~~~ 98 (110)
+..++.-+.++++.+.++.-
T Consensus 164 d~~~~q~~~~~~~~l~~leqRi~DL~~ 190 (333)
T PF05816_consen 164 DQMDAQELADLEQALFRLEQRIQDLQL 190 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665544
No 56
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=81.38 E-value=5.2 Score=27.69 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
++|.+..++..-.|+...+-+++..+++-.+-+.-++..|.
T Consensus 83 KdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 83 KDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57888888888889999999998888888888877777664
No 57
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.84 E-value=15 Score=24.48 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
...+.....++++++.+++.+..+..++..+...++..
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666777777777777777776666666543
No 58
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=79.37 E-value=11 Score=28.03 Aligned_cols=68 Identities=25% Similarity=0.297 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHH
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRH 89 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l 89 (110)
....+|..+..++..+..+++.+...+..+.....-|+..+ +.. .|-|=|| .|=..|..+++++
T Consensus 139 e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~---~IQ~NLv------------tr~g~l~~El~rm 203 (213)
T PF13093_consen 139 EEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQE---NIQPNLV------------TRDGELEAELERM 203 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcc---ccccccC------------CCCchHHHHHHHH
Confidence 46688999999999999999999999999999999999888 555 3555555 3444455555555
Q ss_pred HHHH
Q psy14230 90 DDTI 93 (110)
Q Consensus 90 ~~~~ 93 (110)
.--+
T Consensus 204 R~Ll 207 (213)
T PF13093_consen 204 RMLL 207 (213)
T ss_pred HHHH
Confidence 4433
No 59
>KOG0250|consensus
Probab=79.03 E-value=53 Score=30.27 Aligned_cols=92 Identities=12% Similarity=0.207 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhH--hccHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILV--KQEMEEAKQNVKKRIDYISAELKRHDDT 92 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV--~~~~~ea~~~l~~r~e~i~~~i~~l~~~ 92 (110)
++..+++.+..+.+...+++.+.++...-+.++..- ...|=|.||..=- ..++..-.+.+++.++.|+.+++.++.+
T Consensus 338 Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~-~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~ 416 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKE-VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ 416 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333321 2233344444321 2234444555666666666777666666
Q ss_pred HHHHHHHHHhhcchh
Q psy14230 93 IATLDTKQDTHLPIT 107 (110)
Q Consensus 93 ~~~~~~~l~e~k~~l 107 (110)
+..+..+.++++..+
T Consensus 417 ~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 417 INSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665543
No 60
>PF15294 Leu_zip: Leucine zipper
Probab=78.77 E-value=29 Score=27.09 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchh--HhccHHHHHHHHHHhHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPIL--VKQEMEEAKQNVKKRIDYI 82 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vL--V~~~~~ea~~~l~~r~e~i 82 (110)
++.+.+..-+++..++.+.......+..++.++.+...+....... ...+++ +.-+ .+..+.-++..+++.+...
T Consensus 137 Lq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k-~~~~~~--~q~l~dLE~k~a~lK~e~ek~~~d~ 213 (278)
T PF15294_consen 137 LQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGK-KDLSFK--AQDLSDLENKMAALKSELEKALQDK 213 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccc--ccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555666666666666666544333321 111233 1222 3344455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhcc
Q psy14230 83 SAELKRHDDTIATLDTKQDTHLPITSL 109 (110)
Q Consensus 83 ~~~i~~l~~~~~~~~~~l~e~k~~l~~ 109 (110)
+...+.++..+..+-.++-..+..|.+
T Consensus 214 ~~~~k~L~e~L~~~KhelL~~QeqL~~ 240 (278)
T PF15294_consen 214 ESQQKALEETLQSCKHELLRVQEQLSL 240 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhc
Confidence 667777777777666666555555443
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.68 E-value=45 Score=29.21 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~ 97 (110)
.|..++.....+|..+|.|+.+-.....+=+ ..--|.++.. ..+..|+-+.+..|...++.++++|...++..+
T Consensus 492 ~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee----~~aar~~~~~--~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 492 QLEKRLAEERRQRASLEKQLQEERKARKEEE----EKAARALAQA--QATRQECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----Hhhhhccccc--hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555544433211 1222222222 224447777888898999999999998888888
Q ss_pred HHHHhhcchh
Q psy14230 98 TKQDTHLPIT 107 (110)
Q Consensus 98 ~~l~e~k~~l 107 (110)
+++..+...+
T Consensus 566 e~~~~~e~~~ 575 (697)
T PF09726_consen 566 EQIRELESEL 575 (697)
T ss_pred HHHHHHHHHH
Confidence 8887776544
No 62
>KOG0995|consensus
Probab=78.04 E-value=38 Score=29.05 Aligned_cols=94 Identities=14% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
+...+++..++....++..++...+..-.-.+..-+.-..+. |-.-|+..=. ......+...+.++.+..+++.
T Consensus 231 ~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~-----~~~~k~~~~~~~l~~l~~Eie~ 305 (581)
T KOG0995|consen 231 TSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVS-----QMKSKKQHMEKKLEMLKSEIEE 305 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333333333333344 4444442211 1123334444455555555555
Q ss_pred HHHHHHHHHHHHHhhcchhc
Q psy14230 89 HDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 89 l~~~~~~~~~~l~e~k~~l~ 108 (110)
.+.+++.++++..+++..|.
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 63
>smart00150 SPEC Spectrin repeats.
Probab=77.93 E-value=13 Score=22.49 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14230 30 RQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 30 ~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~ 97 (110)
...++..+.+|+....++.... .-.-..-.|.-|+.....++ +.+..+++.|...-+.+.....+-.
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~-~~i~~~~~~l~~~w~~l~~~~~~r~ 97 (101)
T smart00150 30 LESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDA-EEIEERLEELNERWEELKELAEERR 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666665554 32222336777776644433 5566666666655555555444433
No 64
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=77.61 E-value=37 Score=27.66 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~ 97 (110)
.+..+++.+..++..+..++.+++..+..+.... ..++ ...........+......+..++..+..++..+.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~--~~~~------~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLK--KQGK------LPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cccc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666655555532 1111 1123445566667777777788888888888888
Q ss_pred HHHHhh
Q psy14230 98 TKQDTH 103 (110)
Q Consensus 98 ~~l~e~ 103 (110)
+.+...
T Consensus 403 ~~l~~~ 408 (451)
T PF03961_consen 403 EELERS 408 (451)
T ss_pred HHHHhh
Confidence 777765
No 65
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=77.48 E-value=6.6 Score=23.64 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
+..+|+.|++.++.++...+...+..+.+...++
T Consensus 26 ~~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 26 APLTIEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446888888888888888888888888777654
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.36 E-value=30 Score=26.43 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCC-CchhHHhhcchhHhc-----cHHHHHHHHHHhH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD---LMK-DGEVYKLIGPILVKQ-----EMEEAKQNVKKRI 79 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~---~l~-d~~~yKlVG~vLV~~-----~~~ea~~~l~~r~ 79 (110)
+...-..|..++..+..+-.+..++++++.+...=++..+ ..- |.+-|+-.++-+-.. +..+-...+..++
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554443322221 222 556666555433221 3344444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 80 DYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 80 e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
+.++++++.+...+..++..+.+.+..
T Consensus 120 ~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 120 EKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554443
No 67
>KOG0980|consensus
Probab=77.35 E-value=38 Score=30.63 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
++++...+++..++.+..+..+.+.+..+..+.+..++..+.
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777777776666666554
No 68
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=77.12 E-value=25 Score=27.08 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhH
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVY 56 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~y 56 (110)
....+|.+|+++++.+...+..+++.+.+.+.-++-+..-. +..-+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~ 223 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSD 223 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 45678889999999999999999999999999998887766 55444
No 69
>PRK00846 hypothetical protein; Provisional
Probab=76.41 E-value=13 Score=23.52 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=33.0
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
..+..+.+..|+.++.|-+..|+.|+..+...+..+..++..+.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888877777777766553
No 70
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=75.88 E-value=26 Score=26.36 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHH
Q psy14230 4 EVQKKLENELNLFKQ------CQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKK 77 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~------lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~ 77 (110)
.+||.+-..+..+.. +...++.+..-.....+.+.+....+++-..- |..+-...|+-.-..+-+.+-..+-.
T Consensus 6 ~lP~~l~~~~~~v~~~~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~e-d~~~r~~~g~~W~r~~S~~~~~~l~~ 84 (296)
T PF13949_consen 6 GLPPSLLEKSEEVRSEGGIEKLEESLQELPELSQEVRSILDEIEEMLDEEERE-DEQLRAKYGERWTRPPSSELNASLRK 84 (296)
T ss_dssp S--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSTTTCGSS-HHHHCHHHHH
T ss_pred CCChHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcCCCcHhhHHHHHH
Confidence 478888877777664 55555555555566666666666666555543 33444445776666677778888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.+..+..-+......-..+..++..+...|
T Consensus 85 ~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l 114 (296)
T PF13949_consen 85 ELQKYREYLEQASESDSQLRSKLESIEENL 114 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888888888888877777777777776654
No 71
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=75.55 E-value=5.1 Score=23.01 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhh
Q psy14230 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLI 59 (110)
Q Consensus 17 q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlV 59 (110)
..|+++...+..+.+.|++..+-++.|.-=-+--. +.++||.-
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~VG~Kifkt~ 45 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRSVGEKIFKTA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhhhhhhhccC
Confidence 45788888999999999999988888864434444 55666643
No 72
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=75.39 E-value=11 Score=21.71 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=22.5
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTI 93 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~ 93 (110)
+...+..++..|..+++.++++++.++.++
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344567778888888888888888887764
No 73
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=75.30 E-value=40 Score=26.94 Aligned_cols=102 Identities=10% Similarity=0.116 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHH
Q psy14230 5 VQKKLENELNLFKQCQ-KEYQKVLNQRQLLSAQLNENESVQKEL-DLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDY 81 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq-~~l~~l~~~~~~le~q~~E~~~v~eeL-~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~ 81 (110)
|-|.++..-.+..-|. ..+..+....+.|-.++.......... ...+ +.+|=.+-+-+=.=.....++|.|-.|+..
T Consensus 244 l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~t 323 (388)
T PF04912_consen 244 LLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKT 323 (388)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3344444444444342 244555555555555554444443333 2333 433322111111111233444444444444
Q ss_pred HH----------HHHHHHHHHHHHHHHHHHhhcch
Q psy14230 82 IS----------AELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 82 i~----------~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
|. ..+..++....++...+..|...
T Consensus 324 L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~ 358 (388)
T PF04912_consen 324 LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEEL 358 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33444444445555555444443
No 74
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.05 E-value=50 Score=27.87 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcc-CC-CchhHHhhcchhHhccHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQ----------RQLLSAQLNENESVQKELDL-MK-DGEVYKLIGPILVKQEMEEAK 72 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~----------~~~le~q~~E~~~v~eeL~~-l~-d~~~yKlVG~vLV~~~~~ea~ 72 (110)
++..+...-.+...+..++..+... ...++.++++.....+++.. +. ....|..+-.-+- +..+-+
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le--el~e~l 392 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE--EILKQL 392 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH--HHHHHH
Confidence 4444555555555566666655555 55566666666555553332 23 3455663332221 223344
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..+++....+...+..+.+...+...++..|+..+
T Consensus 393 eeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 393 EEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555443
No 75
>PRK01203 prefoldin subunit alpha; Provisional
Probab=74.94 E-value=20 Score=24.90 Aligned_cols=88 Identities=10% Similarity=0.133 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhh-----cchhHhccH-----------H----------HH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLI-----GPILVKQEM-----------E----------EA 71 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlV-----G~vLV~~~~-----------~----------ea 71 (110)
.+-.+++-+.+++..|..+++-...+..++... -.+.+-. +++||+.+- + -+
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~--ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~V 81 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQT--ISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYI 81 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEE
Confidence 467889999999999999999999999998542 1222111 345665522 2 24
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
...++.++++|+++++.+++-+.++...++.+.+.+
T Consensus 82 EK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~ 117 (130)
T PRK01203 82 AEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQY 117 (130)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778999999999999999999999998877654
No 76
>KOG3047|consensus
Probab=74.73 E-value=27 Score=24.60 Aligned_cols=92 Identities=9% Similarity=0.201 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhccCC-CchhHHhhcchhHhccHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQK-----------ELDLMK-DGEVYKLIGPILVKQEMEEAK 72 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~e-----------eL~~l~-d~~~yKlVG~vLV~~~~~ea~ 72 (110)
|.|.+-.....|..++.++.+...-+-..+.-+++.-.-++ .+.--| ..++-++-.+++++.+..+|+
T Consensus 28 ih~di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAi 107 (157)
T KOG3047|consen 28 IHPDIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAI 107 (157)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHH
Confidence 56667777777777777777666555555444443221111 112223 345667667899999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
..++.+.+.+..-.+++.+.--.+
T Consensus 108 Kf~DRK~dlLkel~ekLqKdsmki 131 (157)
T KOG3047|consen 108 KFCDRKMDLLKELMEKLQKDSMKI 131 (157)
T ss_pred HHHHHhHHHHHHHHHHHHHhHHHH
Confidence 999999998888887777654443
No 77
>PRK02224 chromosome segregation protein; Provisional
Probab=74.65 E-value=59 Score=28.49 Aligned_cols=15 Identities=13% Similarity=0.415 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy14230 83 SAELKRHDDTIATLD 97 (110)
Q Consensus 83 ~~~i~~l~~~~~~~~ 97 (110)
...+..+...+..++
T Consensus 278 ~~~i~~~~~~~~~le 292 (880)
T PRK02224 278 AEEVRDLRERLEELE 292 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 78
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=74.22 E-value=6.6 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=32.7
Q ss_pred hhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHH
Q psy14230 54 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 90 (110)
Q Consensus 54 ~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~ 90 (110)
=+-+-+||.+.-+-+.+|...+..|++.|...+=.++
T Consensus 38 F~~~elGp~~YNqgv~DA~~~~~~r~~~l~~~ly~lE 74 (76)
T PF09932_consen 38 FFIEELGPHFYNQGVQDAQAVLEERMEDLEEELYELE 74 (76)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 4667799999999999999999999999998876665
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.54 E-value=87 Score=29.96 Aligned_cols=86 Identities=9% Similarity=0.137 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhc-chhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIA 94 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG-~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~ 94 (110)
+..++.++..+......+..++..+...+..++.. =.+.| |-|-..+...-..+...+++..+.++..++.++.
T Consensus 392 LeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~-----~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~ 466 (1486)
T PRK04863 392 VDELKSQLADYQQALDVQQTRAIQYQQAVQALERA-----KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLS 466 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444332 12233 3444445566666666777777777777777777
Q ss_pred HHHHHHHhhcch
Q psy14230 95 TLDTKQDTHLPI 106 (110)
Q Consensus 95 ~~~~~l~e~k~~ 106 (110)
.....+..+...
T Consensus 467 ~lea~leql~~~ 478 (1486)
T PRK04863 467 VAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 777777666554
No 80
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=73.51 E-value=28 Score=25.80 Aligned_cols=85 Identities=7% Similarity=0.171 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhccC-C-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNE--------NESVQKELDLM-K-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELK 87 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E--------~~~v~eeL~~l-~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~ 87 (110)
+|+.+|..|...+..++..... ...|..||+.| + -..-++-.+. =....+.-+..|...++.|+.++.
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~--~~~~~~~~l~~v~~Dl~~ie~QV~ 177 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE--GRSKSGKNLKSVREDLDTIEEQVD 177 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4666666666666666655544 24455555443 2 3333332311 111222334556777888888888
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy14230 88 RHDDTIATLDTKQDTHL 104 (110)
Q Consensus 88 ~l~~~~~~~~~~l~e~k 104 (110)
.|+.-+.....+++.++
T Consensus 178 ~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 178 GLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888888888888775
No 81
>KOG1655|consensus
Probab=73.28 E-value=11 Score=28.25 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.+..+|...+++|-+.|+..|++|+.++-.+..+|...+
T Consensus 15 psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R 53 (218)
T KOG1655|consen 15 PSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTR 53 (218)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999999988887764
No 82
>PHA00489 scaffolding protein
Probab=72.14 E-value=16 Score=23.96 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchh
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPIL 63 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vL 63 (110)
+|+.-..|.....++.++....+.+..+....- - ++++||.|||.=
T Consensus 29 Lqqlr~~ygSf~sEy~elT~a~eKl~aek~DLi---------vsNskLFrqlg~tk 75 (101)
T PHA00489 29 LQQLRESYGSFHSEYEELTEALEKLTAEKEDLI---------VSNSKLFRQLGPTK 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---------hhhHHHHHHcCCcc
Confidence 455555666666666666666666555544321 2 679999999863
No 83
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.97 E-value=24 Score=27.79 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCC-CchhH--HhhcchhHhccHHHHHHH-----HHHhHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKE-LDLMK-DGEVY--KLIGPILVKQEMEEAKQN-----VKKRIDYISAELKR 88 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~ee-L~~l~-d~~~y--KlVG~vLV~~~~~ea~~~-----l~~r~e~i~~~i~~ 88 (110)
.|+.++..+..++.+...-+.+|..|+-. -.+.+ +..+- -.-|+++|.+.-..+++. |+-|+..+-.+-+.
T Consensus 151 ~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~ 230 (302)
T PF09738_consen 151 SLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEE 230 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHH
Confidence 33344444444444444444455555543 22222 11111 035777777766655554 46678888888888
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy14230 89 HDDTIATLDTKQDTHLP 105 (110)
Q Consensus 89 l~~~~~~~~~~l~e~k~ 105 (110)
|..++..+..++.+.+.
T Consensus 231 L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 231 LLEQVRKLKLQLEERQS 247 (302)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888766543
No 84
>KOG0964|consensus
Probab=71.58 E-value=60 Score=29.96 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccH-------------HHHHHHHHHhHHH
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEM-------------EEAKQNVKKRIDY 81 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~-------------~ea~~~l~~r~e~ 81 (110)
....|+.+..++..+..++..+--+...-...|+..-.+++|+-+|++.....- .--+..++.+++.
T Consensus 786 ~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~ 865 (1200)
T KOG0964|consen 786 RLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEA 865 (1200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 344455555555555555555544545555555442267888888888665421 1223344566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 82 ISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 82 i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.-.+++.+...+.++...+.+.+..+
T Consensus 866 ~~~el~~l~~~i~~~~a~~~~~~~~l 891 (1200)
T KOG0964|consen 866 AILELKTLQDSIDKKKAEIKEIKKEL 891 (1200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655544
No 85
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.15 E-value=19 Score=21.59 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=5.1
Q ss_pred HhccCC-CchhHH
Q psy14230 46 ELDLMK-DGEVYK 57 (110)
Q Consensus 46 eL~~l~-d~~~yK 57 (110)
.+.... |..+|+
T Consensus 64 ~lgm~~~~E~v~~ 76 (80)
T PF04977_consen 64 KLGMVKPGEIVFK 76 (80)
T ss_pred HcCCcCCCCEEEe
Confidence 344444 444444
No 86
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=70.35 E-value=7 Score=24.86 Aligned_cols=46 Identities=9% Similarity=0.136 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
.|--++.+.+|++|-..+..+...+..+.+--.-...+++.|..++
T Consensus 2 spLEq~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE 47 (78)
T PF08656_consen 2 SPLEQEVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELE 47 (78)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 4667889999999999999999999999555555567888887775
No 87
>KOG0933|consensus
Probab=70.21 E-value=92 Score=28.85 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
++++++..-..+..+..+++.+..+-+....-.++++..+-+|..+
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~ 727 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALL 727 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444444444444444443
No 88
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=69.89 E-value=30 Score=23.09 Aligned_cols=76 Identities=5% Similarity=0.192 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhccCC-Cc-hhHHhhcchhHhc----------------cHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14230 32 LLSAQLNENESVQKELDLMK-DG-EVYKLIGPILVKQ----------------EMEEAKQNVKKRIDYISAELKRHDDTI 93 (110)
Q Consensus 32 ~le~q~~E~~~v~eeL~~l~-d~-~~yKlVG~vLV~~----------------~~~ea~~~l~~r~e~i~~~i~~l~~~~ 93 (110)
.-+.+..-.+..+..+.-.+ ++ .|...+.|.+++. -.......++.++.....+.+++...+
T Consensus 24 ~~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 24 VRELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HhccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666665 43 4444455555554 235556666777777777777777777
Q ss_pred HHHHHHHHhhcchh
Q psy14230 94 ATLDTKQDTHLPIT 107 (110)
Q Consensus 94 ~~~~~~l~e~k~~l 107 (110)
+...+++..++..+
T Consensus 104 ~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 104 KKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777766543
No 89
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.15 E-value=53 Score=25.67 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
.-+.+..-+..+......|..++.....+..++...|
T Consensus 171 ~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D 207 (325)
T PF08317_consen 171 QLEQLDELLPKLRERKAELEEELENLKQLVEEIESCD 207 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 3334444455555556666666666666666655554
No 90
>PRK09039 hypothetical protein; Validated
Probab=69.03 E-value=56 Score=25.91 Aligned_cols=41 Identities=10% Similarity=-0.016 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQK 45 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~e 45 (110)
+|..+.-.-..-..++..+..+..++..++....+.+....
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34334434444445555555555555555555555544444
No 91
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.16 E-value=21 Score=21.24 Aligned_cols=29 Identities=3% Similarity=0.138 Sum_probs=13.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+++++..++..+..+.++.+++.+.++++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 92
>PRK14127 cell division protein GpsB; Provisional
Probab=67.88 E-value=23 Score=23.82 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+++=+..|....+.+..++.+|..++..+..++.+++..+.
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44445555567777778888888888888888888776553
No 93
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=67.63 E-value=13 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 20 QKEYQKVLNQRQLLSAQLNENESVQ 44 (110)
Q Consensus 20 q~~l~~l~~~~~~le~q~~E~~~v~ 44 (110)
..+.......+..++.++.+.....
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ 108 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRA 108 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444333333
No 94
>KOG1029|consensus
Probab=67.62 E-value=97 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
++.+...|+..++.|+++..+--.++.-+..++.+++.
T Consensus 540 ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~ 577 (1118)
T KOG1029|consen 540 KELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKE 577 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45555666666666666665555555555555555544
No 95
>KOG0996|consensus
Probab=67.28 E-value=1.1e+02 Score=28.71 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-Cch-----hHHhhcc---hhH--hccHHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGE-----VYKLIGP---ILV--KQEMEEAKQNV 75 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~-----~yKlVG~---vLV--~~~~~ea~~~l 75 (110)
...+..=.++-++++.+..+.+.+..++.++.+...-..+++.++ +.. |-.=|-. .+. ..+.++....+
T Consensus 391 ~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l 470 (1293)
T KOG0996|consen 391 KKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSL 470 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555567778888899999999999999999999999998 532 2211111 111 12557777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhcc
Q psy14230 76 KKRIDYISAELKRHDDTIATLDTKQDTHLPITSL 109 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~~ 109 (110)
+.+-+.+..++..+++.+.....++.+.+..+..
T Consensus 471 ~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~v 504 (1293)
T KOG0996|consen 471 KQETEGIREEIEKLEKELMPLLKQVNEARSELDV 504 (1293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888777777766543
No 96
>COG4550 Predicted membrane protein [Function unknown]
Probab=66.45 E-value=15 Score=25.12 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHH
Q psy14230 28 NQRQLLSAQLNENESVQ---KELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 90 (110)
Q Consensus 28 ~~~~~le~q~~E~~~v~---eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~ 90 (110)
.--++.++++++|..|. ++++.+. .++-|+. -++.+|..-.+.++..|+.+|+.+-
T Consensus 25 ~~fq~aE~qin~n~~v~~~~~~iK~lQKeAVn~q~-------y~K~eAlkqses~i~~le~ei~~~P 84 (120)
T COG4550 25 KFFQQAEAQINANQKVKTKVDEIKKLQKEAVNLQH-------YDKEEALKQSESKIDELEAEIDHLP 84 (120)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHH-------hhHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55677888999888775 5666666 7777774 4688999999999999999988653
No 97
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.43 E-value=1.1e+02 Score=28.46 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQ 20 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq 20 (110)
+.|.+......|.+++
T Consensus 914 ~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 914 LETFLEKDQQEKEELI 929 (1311)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444444444444333
No 98
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.31 E-value=19 Score=27.98 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=14.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.+..+......|+.+|++++.++.++..+..+.+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~ 72 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ 72 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 99
>PF13514 AAA_27: AAA domain
Probab=66.15 E-value=1e+02 Score=28.14 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=30.2
Q ss_pred hHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 63 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 63 LV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.++.+-.+-...+..++..+..++..+...+..+..++..+
T Consensus 235 ~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l 275 (1111)
T PF13514_consen 235 DFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDAL 275 (1111)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666777777777788888888888888877777654
No 100
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=65.96 E-value=20 Score=21.55 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTK 99 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~ 99 (110)
.+..|+.|+..|+.+|.|++..+.....-
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999988876653
No 101
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.57 E-value=86 Score=26.79 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14230 22 EYQKVLNQRQLLSAQL 37 (110)
Q Consensus 22 ~l~~l~~~~~~le~q~ 37 (110)
+...+..++..++.++
T Consensus 392 ~~~~~~~~~~~~e~el 407 (650)
T TIGR03185 392 AKSQLLKELRELEEEL 407 (650)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444333
No 102
>PRK01156 chromosome segregation protein; Provisional
Probab=65.05 E-value=99 Score=27.27 Aligned_cols=30 Identities=3% Similarity=-0.041 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 21 KEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 21 ~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
..+..+..++..++..+.+++.-.+++..+
T Consensus 249 ~~~~~~e~~i~ele~~l~el~~~~~el~~~ 278 (895)
T PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKEL 278 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455444444444444443
No 103
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=64.88 E-value=14 Score=22.05 Aligned_cols=29 Identities=7% Similarity=0.254 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQ 100 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l 100 (110)
.+.++..+..++++.+.+.+.+.++++-+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554444
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.55 E-value=1e+02 Score=27.17 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISA 84 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~ 84 (110)
+..+.+.++.+.++++++...+...-..|...+.+.....+.|..= =..+.+.++..+= ...+|.....+.++.+..
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R-~~~vl~~l~~~~P--~LS~AEr~~~~EL~~~~~ 646 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR-VDRVLQLLNSQLP--VLSEAEREFKKELERMKD 646 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCC--CCCHHHHHHHHHHHHHHH
Confidence 3444555666666666666666655555565555555555555430 0123333432111 123333444445555555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14230 85 ELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 85 ~i~~l~~~~~~~~~~l~e 102 (110)
++..+...++++..+++.
T Consensus 647 ~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 647 QLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555544
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=63.54 E-value=97 Score=26.67 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+..+.-+.+++.|+.-++.-...+..+..+.+.++.
T Consensus 387 ~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 387 ELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRA 422 (594)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555555555444443
No 106
>smart00338 BRLZ basic region leucin zipper.
Probab=63.03 E-value=29 Score=20.46 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
..-...|+.++..++.+...|..++..+..++..++..+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778889999999999999999999998888876653
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.43 E-value=59 Score=23.82 Aligned_cols=29 Identities=10% Similarity=0.458 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
..+..+++.++..+..-+..++.+++++.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 108
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=62.00 E-value=38 Score=21.41 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-C--chhHHhhcchhHhccHHHHHHHHH
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL--MK-D--GEVYKLIGPILVKQEMEEAKQNVK 76 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~--l~-d--~~~yKlVG~vLV~~~~~ea~~~l~ 76 (110)
+.++|++++..+.....+-.+.+.+..++...-... +..... ++ + ...++ -+......+....+
T Consensus 10 ~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-----~I~~~~~~~~~l~d 78 (105)
T PF12998_consen 10 LENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKF------IKNHGSPSLSPEKRRELLK-----EIQEEYERALELSD 78 (105)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTCTTS--S-HHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH------HhhcccccCChHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 578999999999888888888665554443322211 111111 11 1 12222 23345566777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
.++.-...-.+.+++.+..++..+.
T Consensus 79 eKv~lA~~~~d~v~~hi~rLD~dl~ 103 (105)
T PF12998_consen 79 EKVALAQQAYDLVDRHIRRLDQDLK 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777766554
No 109
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.87 E-value=1.4e+02 Score=27.89 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENES 42 (110)
Q Consensus 8 ~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~ 42 (110)
.+...-..+..+...+..+......+..+++++..
T Consensus 830 ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ 864 (1311)
T TIGR00606 830 EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444433
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=61.48 E-value=1.1e+02 Score=26.78 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhccCC--Cc-hhHHhhcchhHhccHHHHHHH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNE-----------NESVQKELDLMK--DG-EVYKLIGPILVKQEMEEAKQN 74 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E-----------~~~v~eeL~~l~--d~-~~yKlVG~vLV~~~~~ea~~~ 74 (110)
.++.-.++.+|+.++..-..+...++.+..+ .+..+.+|.-+- .. -=..|-+..=||+|+--|+..
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~ 626 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGD 626 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4555566777777777777777777776643 333333343332 11 223456777788888889999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
....+|-+...+..=+++|.++..++.++-.+
T Consensus 627 akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 627 AKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99899999999998888888888888877554
No 111
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.73 E-value=81 Score=26.94 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
+.+++.+..+...+.+..++..+.+++.+++.+++++++.
T Consensus 83 ~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 83 SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555544433
No 112
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=59.39 E-value=92 Score=25.02 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhH--------hccHHHHHHHHHHhHHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILV--------KQEMEEAKQNVKKRIDYISAELKRH 89 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV--------~~~~~ea~~~l~~r~e~i~~~i~~l 89 (110)
.|...+..+...+..|...+...+.+++.+.. ++.....+|. ....|+|-..|-+-++.|.+-...|
T Consensus 61 eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~-----pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL 135 (384)
T PF03148_consen 61 ELERELEELDEEIDLLEEEKRRLEKALEALRK-----PLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLL 135 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45555666666777777777777777766663 2333333333 2235778888888888888888888
Q ss_pred HHHHHHHHHHHHhhcc
Q psy14230 90 DDTIATLDTKQDTHLP 105 (110)
Q Consensus 90 ~~~~~~~~~~l~e~k~ 105 (110)
...+....+++..++.
T Consensus 136 ~~~l~~~~eQl~~lr~ 151 (384)
T PF03148_consen 136 QRTLEQAEEQLRLLRA 151 (384)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888776554
No 113
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=59.25 E-value=37 Score=20.39 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 31 QLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 31 ~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
..++..+..++....++.... .-.-..-.|..|+... ....+.+..++..|...-..+...+.+-...+.
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445555556666666666554 3222233777884444 444477777777777777777777776666554
No 114
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.23 E-value=84 Score=24.54 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 81 YISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.++.++..++..+.++..+..++
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 115
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=58.82 E-value=46 Score=22.83 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=23.1
Q ss_pred chhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 53 GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 53 ~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
..+|- ||..++=-..--.-..=.++-+....+++.++.++.++..++++.+
T Consensus 82 ~fiF~-Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 82 AFIFS-VAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45676 5444443322222222223334444555555555555555555443
No 116
>PTZ00464 SNF-7-like protein; Provisional
Probab=58.77 E-value=37 Score=25.26 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=31.0
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+.+..++...+..|++.+.+.+++++.++....+.+...
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347889999999999999999998888777776666433
No 117
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=58.56 E-value=1e+02 Score=25.27 Aligned_cols=96 Identities=9% Similarity=0.153 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-Cc----hhHHhhcchhHhccHHHHHHHHH
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DG----EVYKLIGPILVKQEMEEAKQNVK 76 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~----~~yKlVG~vLV~~~~~ea~~~l~ 76 (110)
.+..-..+|+...+||....++..+...+..-++.+......++++-.-. +. ..|=..|....+.=..+..|.+.
T Consensus 125 f~r~~~siqe~~~kYQt~~~~id~I~~~l~k~kd~L~~dn~~Le~l~~~n~~~~~~L~~yI~agel~~eel~~~i~~~~~ 204 (386)
T COG3853 125 FGRSKSSIQEIFSKYQTIGAQIDRIIESLSKGKDELTRDNKMLELLYEKNREYFEHLEKYIAAGELKDEELETEIIPELK 204 (386)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455679999999999999999999999999999999999999887654 33 34444455444432223333333
Q ss_pred H-----------hHHHHHHHHHHHHHHHHHHH
Q psy14230 77 K-----------RIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 77 ~-----------r~e~i~~~i~~l~~~~~~~~ 97 (110)
. .+..+..-+++|+..+.++.
T Consensus 205 ~ka~~~~q~~v~~v~~~~~~~~~L~qRv~Dl~ 236 (386)
T COG3853 205 TKAESGNQMDVQQVNELTLFINRLEQRVYDLL 236 (386)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23444455555666555554
No 118
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.19 E-value=1.1e+02 Score=25.75 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhccC-C-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 31 QLLSAQLNENESVQKELDLM-K-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 31 ~~le~q~~E~~~v~eeL~~l-~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..+..+++......+.+... . ...+|..|..-|-+ ..+....++.....+...+.++.+......+++..++..|
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~--~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEE--IEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544444444332 3 55777766555533 3344455555555555555555555555555555555444
No 119
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.02 E-value=44 Score=20.94 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.+.+..+..|+-|+.|=+..|+.|+..+.+...-+..++..+.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr 46 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR 46 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888887777776664
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.27 E-value=98 Score=24.37 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 12 ELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 12 ~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
....-+.++.=+-.+......|..+++....+.++++.-|
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d 202 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD 202 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 3333444444455556666667777777777777776665
No 121
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=56.01 E-value=36 Score=27.20 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=34.0
Q ss_pred hhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 62 ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 62 vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
+++....+.-........+||+.++..+.+++...+.++..++..
T Consensus 156 ~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 156 AYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555566778899999999999999999999988764
No 122
>PRK11519 tyrosine kinase; Provisional
Probab=54.68 E-value=34 Score=29.69 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=45.0
Q ss_pred hhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 54 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 54 ~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
.+-..+..+++....+.......+-++||+.++..+..++...+.++++++..
T Consensus 244 ~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 244 DILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777888888888888888899999999999999999999999998764
No 123
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=54.63 E-value=41 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=26.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+...+++|-+.|.+.++..++...+....+.++...|.
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~ 67 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLA 67 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777776666666666665543
No 124
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=54.61 E-value=34 Score=29.68 Aligned_cols=53 Identities=8% Similarity=0.184 Sum_probs=44.3
Q ss_pred hhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 54 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 54 ~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
.+-..+..+.+..+.+.-.....+-++||+.++..+..++...+.++++++.+
T Consensus 244 ~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 244 RILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444677778888888888888899999999999999999999999998864
No 125
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=54.48 E-value=70 Score=23.55 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=32.6
Q ss_pred CchhHHhh---cc---hhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 52 DGEVYKLI---GP---ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 52 d~~~yKlV---G~---vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
...+|.-| |. --|....++|..+++.|-+.|..+-+.+++...++
T Consensus 48 ~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~ 98 (204)
T PF10368_consen 48 EQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEF 98 (204)
T ss_dssp HHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666 53 45566778999999999999998888777665544
No 126
>KOG1003|consensus
Probab=53.58 E-value=92 Score=23.28 Aligned_cols=67 Identities=10% Similarity=0.238 Sum_probs=40.4
Q ss_pred HHHHHHHhccCC-CchhHHhhcchhHhc---------cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 40 NESVQKELDLMK-DGEVYKLIGPILVKQ---------EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 40 ~~~v~eeL~~l~-d~~~yKlVG~vLV~~---------~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
+..+.+++..++ +-.+|.....-+... +..+-++.-+.|-+|.+..+..|++.+.+++.++...+.+
T Consensus 111 ~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 111 SEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 345666677776 666666333333332 2233444445677778888888888887777777665543
No 127
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=53.46 E-value=1.2e+02 Score=24.42 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQK 45 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~e 45 (110)
.+.|+.++.++..++..++..+...+.++.
T Consensus 260 k~~Le~ql~~~~~ei~~~e~~i~~L~~ai~ 289 (384)
T PF03148_consen 260 KNELEWQLKKTLQEIAEMEKNIEDLEKAIR 289 (384)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 128
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=52.92 E-value=1.2e+02 Score=24.29 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKE 46 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~ee 46 (110)
|.+=..+..++.|+.+.......+..++........-++.
T Consensus 315 P~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~ 354 (388)
T PF04912_consen 315 PSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKK 354 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777666666555533
No 129
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=52.89 E-value=88 Score=26.40 Aligned_cols=75 Identities=13% Similarity=0.278 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-C--------chhHHhhcchhHhc--cHHHHHHHHHHhHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-D--------GEVYKLIGPILVKQ--EMEEAKQNVKKRIDYISA 84 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d--------~~~yKlVG~vLV~~--~~~ea~~~l~~r~e~i~~ 84 (110)
|-.-+..+..+.+.+...+.+.......+++|...+ + ...|+-+.-.|... +-+.|.+.|+++++.|+.
T Consensus 100 f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~ 179 (569)
T PRK04778 100 FRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEE 179 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 445666777777777777777777777777777665 3 24455555555544 357888888888877776
Q ss_pred HHHHHH
Q psy14230 85 ELKRHD 90 (110)
Q Consensus 85 ~i~~l~ 90 (110)
.....+
T Consensus 180 ~f~~f~ 185 (569)
T PRK04778 180 EFSQFV 185 (569)
T ss_pred HHHHHH
Confidence 665443
No 130
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.88 E-value=50 Score=20.00 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy14230 84 AELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 84 ~~i~~l~~~~~~~~~~l~e 102 (110)
.+|+++..++..+..++.+
T Consensus 32 ~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 32 RQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 131
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.67 E-value=2e+02 Score=26.75 Aligned_cols=42 Identities=5% Similarity=0.079 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
-.-+..|.+..+++.+...+..+..++.+++.+.+..+.+|.
T Consensus 349 ~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~ 390 (1201)
T PF12128_consen 349 ARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLE 390 (1201)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888899999999999999999999998888877664
No 132
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=52.61 E-value=44 Score=26.81 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
++-+..++.+++.++..+..+++.+..+..++.++..
T Consensus 150 Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 150 EERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555443
No 133
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.52 E-value=1.3e+02 Score=24.84 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESV 43 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v 43 (110)
++.+...-.+..+++.++..+..++..++.++.-.+..
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666444433
No 134
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=52.44 E-value=72 Score=21.67 Aligned_cols=26 Identities=0% Similarity=0.156 Sum_probs=10.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
..+..+++.|...-..+...+.+...
T Consensus 182 ~~~~~~l~~l~~~~~~l~~~~~~~~~ 207 (213)
T cd00176 182 EEIEEKLEELNERWEELLELAEERQK 207 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 135
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.43 E-value=71 Score=21.61 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhccCC
Q psy14230 33 LSAQLNENESVQKELDLMK 51 (110)
Q Consensus 33 le~q~~E~~~v~eeL~~l~ 51 (110)
++.++.-|-.+.++|..+.
T Consensus 47 YE~El~~Ha~~~~~L~~lr 65 (132)
T PF07926_consen 47 YERELVKHAEDIKELQQLR 65 (132)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3444455555555555553
No 136
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=52.16 E-value=40 Score=21.90 Aligned_cols=34 Identities=9% Similarity=0.318 Sum_probs=23.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.++.=.+++.++++.+++.+..+.+++..++..+
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~ 107 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQI 107 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777777666554
No 137
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=51.92 E-value=45 Score=19.69 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSA 35 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~ 35 (110)
|+.+-.+-++.++.+..+..-+..+..++.++|.
T Consensus 19 MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 19 MKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 4556666777888888888888888888877764
No 138
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.80 E-value=74 Score=21.64 Aligned_cols=34 Identities=0% Similarity=0.087 Sum_probs=16.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.+.+...+..++.+-..+=.-+.++.++.++++.
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~ 103 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRA 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3444444444444444444444445555555443
No 139
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.80 E-value=48 Score=19.46 Aligned_cols=38 Identities=5% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
..-...|+.++..++.+...|...+..+..+...++..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778888888888888888888888887777654
No 140
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=51.79 E-value=63 Score=21.45 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.+....+..++..+..++..++..+..+...+..+.+.+
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 79 EKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777777777777777777776665543
No 141
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.61 E-value=99 Score=23.06 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
+..+-+....+|.++..+...+.....+++......+..+.+|+.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666655555555555443
No 142
>KOG4360|consensus
Probab=51.08 E-value=1.6e+02 Score=25.30 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 14 NLFKQCQKEYQKV----LNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 14 ~~~q~lq~~l~~l----~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
.+....+.+...+ .++-.++-.+..|+...+..|-.++ ..+-.+ .=+-..++-+.....+.+.++.+.+.
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~-----~Ekeel~~~Lq~~~da~~ql~aE~~E 279 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLR-----HEKEELDEHLQAYKDAQRQLTAELEE 279 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444433 3333344444555666666655554 333222 11223455566667788888899999
Q ss_pred HHHHHHHHHHHHHhhcchh
Q psy14230 89 HDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 89 l~~~~~~~~~~l~e~k~~l 107 (110)
++.++.++...+.+....|
T Consensus 280 leDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 280 LEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988887777665544
No 143
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=50.93 E-value=1.2e+02 Score=23.85 Aligned_cols=26 Identities=8% Similarity=0.239 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
.++..++..|+....+..++..++++
T Consensus 232 ~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 232 EELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 144
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.89 E-value=1.7e+02 Score=25.57 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHH
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 90 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~ 90 (110)
........+....+.+..+.+.|+..+.+.+.-++.|+.-=++--.+. =.+.-.+--....+.+++.|+.++..-.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~----~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV----RDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666655554443102212221 1222233334556666666677776666
Q ss_pred HHHHHHHHHHHhhc
Q psy14230 91 DTIATLDTKQDTHL 104 (110)
Q Consensus 91 ~~~~~~~~~l~e~k 104 (110)
..+..+..+++.++
T Consensus 495 ~~ve~L~~~l~~l~ 508 (652)
T COG2433 495 KRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777666665
No 145
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=50.53 E-value=85 Score=21.98 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
.+..+++......++|...+..+.+.+..+...+.+...=..+|+...
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666666666666666666654
No 146
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=50.42 E-value=1.9e+02 Score=26.04 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CchhHHhhcchhHhccHHHHHHHHHH--
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-----DGEVYKLIGPILVKQEMEEAKQNVKK-- 77 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-----d~~~yKlVG~vLV~~~~~ea~~~l~~-- 77 (110)
++.++++-......||..-.++ +..++.+..||....+.+..-| ....|- +-..=|+.++++|+.+++.
T Consensus 439 Lq~ql~es~k~~e~lq~kneel---lk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d-~e~~rik~ev~eal~~~k~~q 514 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEEL---LKVIENQKEENKRLRKMFQEKDQELLENKQQFD-IETTRIKIEVEEALVNVKSLQ 514 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3444555444444444444443 4567888899988888766443 246666 7777888999999887763
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 78 -RIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 78 -r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+++.-+++-.-|.-.+...+.++..+++
T Consensus 515 ~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 515 FKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred hhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 5566555555555555555555554443
No 147
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=50.26 E-value=40 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14230 3 EEVQKKLENELNLFKQCQKEY 23 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l 23 (110)
+++.|.+...|++.+.+|+--
T Consensus 2 gsLeP~iE~LInrInelQQaK 22 (134)
T PF15233_consen 2 GSLEPQIEDLINRINELQQAK 22 (134)
T ss_pred CCccchHHHHHHHHHHHHHHH
Confidence 567899999999999988833
No 148
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=50.18 E-value=61 Score=20.18 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhccCC-Cc--hhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 37 LNENESVQKELDLMK-DG--EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 37 ~~E~~~v~eeL~~l~-d~--~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+.|.+..++.|.+-. |= +||-+ -.-|=+...+.....++.+++ +..++.++...++++.+.+.+...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fL-ee~l~~~~~~~~~~~~keNie-LKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFL-EERLQKLGPESIEELLKENIE-LKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655 53 56663 333334444444444444444 555555555555555555554443
No 149
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=50.01 E-value=30 Score=16.94 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy14230 85 ELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 85 ~i~~l~~~~~~~~~~l~e~k 104 (110)
+++++...|.+++.++.+.+
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666543
No 150
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=49.81 E-value=1.6e+02 Score=27.79 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENES 42 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~ 42 (110)
++..+..|.+++..+..+...+..|..=...+..
T Consensus 225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~ 258 (1353)
T TIGR02680 225 VADALEQLDEYRDELERLEALERALRNFLQRYRR 258 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666555555544444433
No 151
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.58 E-value=1.1e+02 Score=22.79 Aligned_cols=35 Identities=9% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
......|+..|...++.+.+.+....+++.+++..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 152
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=49.25 E-value=58 Score=19.71 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
++..++......+..++...+.+.++
T Consensus 21 ~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 21 RIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 153
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=48.92 E-value=69 Score=20.45 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=31.9
Q ss_pred HhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14230 57 KLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDT 92 (110)
Q Consensus 57 KlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~ 92 (110)
.-.||++.-|-..+|...+..+++.++..+--+++-
T Consensus 44 ~elGpyfYNQGi~da~a~i~ekl~d~te~l~~LEkp 79 (82)
T COG5460 44 GELGPYFYNQGIKDARAVIEEKLADMTEELFALEKP 79 (82)
T ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 348999999999999999999999999998887753
No 154
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.88 E-value=1.2e+02 Score=25.74 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-C--------chhHHhhcchhHhc--cHHHHHHHHHHhHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-D--------GEVYKLIGPILVKQ--EMEEAKQNVKKRIDYISA 84 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d--------~~~yKlVG~vLV~~--~~~ea~~~l~~r~e~i~~ 84 (110)
|-..+..+..+...+..++.+.......+++|...+ . ...|+-+.-.|... +.+.+.+.|+++++.|+.
T Consensus 96 f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~ 175 (560)
T PF06160_consen 96 FKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEE 175 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHH
Confidence 335555666666666666666666666666666554 2 24566666555555 356777777777777766
Q ss_pred HHHHHH
Q psy14230 85 ELKRHD 90 (110)
Q Consensus 85 ~i~~l~ 90 (110)
.....+
T Consensus 176 ~F~~f~ 181 (560)
T PF06160_consen 176 EFSEFE 181 (560)
T ss_pred HHHHHH
Confidence 655543
No 155
>KOG2264|consensus
Probab=48.70 E-value=1.9e+02 Score=25.48 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
++..-......++.++..+|+.|.+++.+++.+++|++..
T Consensus 83 e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 83 EQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334445566788889999999999999999999988764
No 156
>KOG2196|consensus
Probab=48.52 E-value=1.3e+02 Score=23.32 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD 48 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~ 48 (110)
+..........|...+.=+.++.+|++..+..|+
T Consensus 121 e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE 154 (254)
T KOG2196|consen 121 EVVKVKLDQKRLDQELEFILSQQQELEDLLDPLE 154 (254)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555555555555444
No 157
>PHA03011 hypothetical protein; Provisional
Probab=48.35 E-value=83 Score=21.19 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 8 KLENELNLFKQCQKEYQKVLNQRQLLS 34 (110)
Q Consensus 8 ~~Q~~i~~~q~lq~~l~~l~~~~~~le 34 (110)
.+.+.+.+|+.|.++++.+...+..++
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~ 91 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLE 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 158
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=48.30 E-value=76 Score=20.79 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+.+.+...+..+.+.+..++..+......+...+..++.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 76 PWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446677888888888888888888888888877776654
No 159
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=48.21 E-value=75 Score=20.66 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
.++....+..++..|+.++..++..+..+...+.-
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (113)
T cd01109 77 IPERLELLEEHREELEEQIAELQETLAYLDYKIDY 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777777666665543
No 160
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=48.20 E-value=58 Score=19.39 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=32.8
Q ss_pred HhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 57 KLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 57 KlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
|+-.|-|+..-+.+++..-..+++.+..++.++...+..+
T Consensus 26 kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 26 KLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456788899999999999999999999999998888765
No 161
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.14 E-value=1.1e+02 Score=22.62 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
...|+.+-..+..++..+..+...++.+...++..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356666666666666666666666666655544
No 162
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.03 E-value=71 Score=22.99 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
.-.++.++..+...+..+..++......+.+++.
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~ 109 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEK 109 (194)
T ss_dssp ----------------------------------
T ss_pred cccccccccccccccccccccccccccccchhhh
Confidence 3344555555555555555555554444444433
No 163
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=47.87 E-value=17 Score=26.24 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.9
Q ss_pred hcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 59 IGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 59 VG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
=|+.|+..|-.+....++++++.|++++..
T Consensus 142 Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~~ 171 (178)
T PRK06266 142 CGEMLEEYDNSELIKELKEQIKELEEELKL 171 (178)
T ss_pred CCCCCeecccHHHHHHHHHHHHHHHHHhcc
Confidence 688999999999999999999998887763
No 164
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.65 E-value=97 Score=21.82 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14230 84 AELKRHDDTIATLDTKQD 101 (110)
Q Consensus 84 ~~i~~l~~~~~~~~~~l~ 101 (110)
.+..++......+...+.
T Consensus 165 ~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 165 SQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 165
>KOG3647|consensus
Probab=47.64 E-value=1.3e+02 Score=23.81 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHH---
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQ----LNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVK--- 76 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q----~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~--- 76 (110)
+...+|++..+.++...++.++.+....|++. +.|++..-.=|+.+- =++||=- =++..-++......
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~Md----EyE~~EeeLqkly~~Y~ 185 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMD----EYEDCEEELQKLYQRYF 185 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH----HHHHHHHHHHHHHHHHH
Confidence 34456777777777777777776666555443 334555555555554 4677640 01111122222211
Q ss_pred ---HhHHHHHHHHHHHHHHHHHHHHH
Q psy14230 77 ---KRIDYISAELKRHDDTIATLDTK 99 (110)
Q Consensus 77 ---~r~e~i~~~i~~l~~~~~~~~~~ 99 (110)
.++.||+.+++-.-+.....+++
T Consensus 186 l~f~nl~yL~~qldd~~rse~~rqee 211 (338)
T KOG3647|consen 186 LRFHNLDYLKSQLDDRTRSEPIRQEE 211 (338)
T ss_pred HHHhhHHHHHHHHHHHhhhhHHHHHH
Confidence 25566666666555544444443
No 166
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=47.56 E-value=42 Score=21.45 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+++.|.++|.....++.+.+.++.++..
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666544
No 167
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.06 E-value=63 Score=25.08 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=29.9
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
|+..+..++..+..+++.++..+.++......++.+++..+..|
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777777777777777777666666666655544
No 168
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.02 E-value=41 Score=20.06 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+++.|+..+..|..++..+...+..++.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554443
No 169
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.94 E-value=48 Score=23.87 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+..++..|..++..++.++.++.+.+.+.+..|
T Consensus 27 ~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 27 NQARIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666665554
No 170
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=46.46 E-value=69 Score=25.13 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.+++-..+..|++....++..++..+..++.+++.++.
T Consensus 34 ~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 34 SNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46667778888888888888888888888888887764
No 171
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.95 E-value=84 Score=21.63 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=17.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
..+...++.|...++.+..-+..++.++..+
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666666555544
No 172
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=45.77 E-value=2.5e+02 Score=25.95 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKEL 47 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL 47 (110)
...-..+..+...+..+...+...+..+.+++.-+.++
T Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~ 279 (1163)
T COG1196 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL 279 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333333333
No 173
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.34 E-value=1.8e+02 Score=24.14 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchh--Hh---ccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPIL--VK---QEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vL--V~---~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
....++.++..+..++..+.+++.-.+..+.-|+.+. ... ..+++-+ -. .+..+....+..++..+..++-.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLT--EPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666666665555543 110 1111100 01 12334444444555555555555
Q ss_pred HHHHHHHHHHHHHhhcchh
Q psy14230 89 HDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 89 l~~~~~~~~~~l~e~k~~l 107 (110)
++..+.++++++..++..|
T Consensus 150 ~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 150 AERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 174
>KOG1760|consensus
Probab=45.34 E-value=1e+02 Score=21.41 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHH
Q psy14230 12 ELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK--DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRH 89 (110)
Q Consensus 12 ~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~--d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l 89 (110)
...+--.+...+.....++.-|+.-.+|+..+-++=..++ =.-||-.+..-=+.--.++.++++.+.++.++.+.++.
T Consensus 28 l~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I 107 (131)
T KOG1760|consen 28 LNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESI 107 (131)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777788888888888999999999988855666 33455555555555567888888999999999999888
Q ss_pred HHHHHHHHHHH
Q psy14230 90 DDTIATLDTKQ 100 (110)
Q Consensus 90 ~~~~~~~~~~l 100 (110)
...+.++.+-+
T Consensus 108 ~~~m~~LK~~L 118 (131)
T KOG1760|consen 108 SARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 175
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.20 E-value=82 Score=22.85 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
+.++......+++.+.++++.+...+.++..++...+
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777888888888888888888888888877664
No 176
>KOG2577|consensus
Probab=45.11 E-value=55 Score=26.47 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=49.7
Q ss_pred HHHHHHHHhccCC--CchhHHhhcchhHh-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 39 ENESVQKELDLMK--DGEVYKLIGPILVK-QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 39 E~~~v~eeL~~l~--d~~~yKlVG~vLV~-~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.+..|++-|..++ .-.--+++|+-+-. .+..+-...++.+++.+..+-+.|+..+..++..+..+.+
T Consensus 110 DITNVLEGI~LIeKksKN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lte 179 (354)
T KOG2577|consen 110 DITNVLEGIGLIEKKSKNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTE 179 (354)
T ss_pred ehhhhhhcccceeeccccceeeecCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777777777 33555667777776 5667777778888888888888888888888888776543
No 177
>PF13514 AAA_27: AAA domain
Probab=45.08 E-value=2.5e+02 Score=25.75 Aligned_cols=32 Identities=9% Similarity=0.423 Sum_probs=14.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
....+..+++.++.++..+...+.....++..
T Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 802 ERERLQEQLEELEEELEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 178
>KOG1507|consensus
Probab=44.70 E-value=55 Score=26.47 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQ 31 (110)
Q Consensus 1 m~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~ 31 (110)
|++++||.+++.|..+..||.+.-++.++-.
T Consensus 67 ~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~ 97 (358)
T KOG1507|consen 67 MVENLPPAVKNRVLALKNLQLECDEIEAKFQ 97 (358)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999988876544
No 179
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=44.56 E-value=92 Score=20.66 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhccCC---C--c----hhHHhhcchhHhcc-HHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14230 37 LNENESVQKELDLMK---D--G----EVYKLIGPILVKQE-MEEAK-------QNVKKRIDYISAELKRHDDTIATLDTK 99 (110)
Q Consensus 37 ~~E~~~v~eeL~~l~---d--~----~~yKlVG~vLV~~~-~~ea~-------~~l~~r~e~i~~~i~~l~~~~~~~~~~ 99 (110)
--|++...+|+..++ | . .|-+=.||.||... ..+.. ..-..=++.|..+++-+.+.+..++++
T Consensus 11 ~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKq 90 (99)
T PF13758_consen 11 EAEYEGLKEEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQ 90 (99)
T ss_pred HHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888882 2 1 34444556665442 22222 223456789999999999999999999
Q ss_pred HHhhcchh
Q psy14230 100 QDTHLPIT 107 (110)
Q Consensus 100 l~e~k~~l 107 (110)
+...-.++
T Consensus 91 l~~aE~kl 98 (99)
T PF13758_consen 91 LEAAENKL 98 (99)
T ss_pred HHHHHHhc
Confidence 98776554
No 180
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=44.49 E-value=44 Score=26.92 Aligned_cols=31 Identities=10% Similarity=0.349 Sum_probs=23.4
Q ss_pred hhHhccHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14230 62 ILVKQEMEEAKQNVKKRIDYISAELKRHDDT 92 (110)
Q Consensus 62 vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~ 92 (110)
++...+.++.+..++.+++.++++++.++..
T Consensus 234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887777766654
No 181
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.43 E-value=1.1e+02 Score=21.30 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
+..|+...+.+-..+..++..+.++...+++-...
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~ 71 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR 71 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444445555555555555555554443
No 182
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=44.37 E-value=59 Score=19.79 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=19.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
+..++.|+..+..+|.+++.+...+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457888999999999988877654
No 183
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=44.01 E-value=77 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
+.+++..|+.|...+..+++.|+..-..++++|..
T Consensus 2 v~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrt 36 (283)
T PF11285_consen 2 VQEALKELEQRKQALQIEIEQLERRRERIEKEMRT 36 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35788889999999999999999998888888864
No 184
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.89 E-value=1.3e+02 Score=22.11 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHH---HHHHHHhHHHHHHH
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEA---KQNVKKRIDYISAE 85 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea---~~~l~~r~e~i~~~ 85 (110)
...-.+|..++.....+..++..|+..+.+...-..+|.-=- .+.--..+...+-..+.+.+ ...++.+++.++..
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~ 181 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQ 181 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555666666666665555555443322 22222233334433444433 33355566555554
Q ss_pred HHH
Q psy14230 86 LKR 88 (110)
Q Consensus 86 i~~ 88 (110)
-+.
T Consensus 182 aea 184 (219)
T TIGR02977 182 AES 184 (219)
T ss_pred HHH
Confidence 433
No 185
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=43.83 E-value=64 Score=21.98 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
|+...|......|.+++.+++..+..+..++.++.
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~ 35 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAI 35 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666677777777777766666665543
No 186
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.92 E-value=1.4e+02 Score=24.04 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNE 39 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E 39 (110)
.++...+.+|...+.++.++..+..+...-.++
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~ 298 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSE 298 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444555555555555554444444443333
No 187
>PRK00295 hypothetical protein; Provisional
Probab=42.77 E-value=77 Score=19.24 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q psy14230 30 RQLLSAQLNENESVQKELD 48 (110)
Q Consensus 30 ~~~le~q~~E~~~v~eeL~ 48 (110)
+..|+..+.-.+..+++|+
T Consensus 7 i~~LE~kla~qE~tie~Ln 25 (68)
T PRK00295 7 VTELESRQAFQDDTIQALN 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444
No 188
>KOG4674|consensus
Probab=42.71 E-value=3.5e+02 Score=26.81 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhc----cHHHHHHHHHHhHHHHH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQ----EMEEAKQNVKKRIDYIS 83 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~----~~~ea~~~l~~r~e~i~ 83 (110)
+++....++.++..+..+...+.++.+++. ...-+++.+. +..-||.=-+-|+.+ ++.+ ...+...+..++
T Consensus 1245 ~qEl~~~i~kl~~el~plq~~l~el~~e~~---~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~-~~kL~~ei~~Lk 1320 (1822)
T KOG4674|consen 1245 IQELRDKIEKLNFELAPLQNELKELKAELQ---EKVAELKKLEEENDRWKQRNQDLLEKYKDSDKND-YEKLKSEISRLK 1320 (1822)
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHH
Confidence 455555555555555555555555555544 4456677777 776676555555554 2222 333444667777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy14230 84 AELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 84 ~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.++...++.++++.+++..++.
T Consensus 1321 ~el~~ke~~~~el~~~~~~~q~ 1342 (1822)
T KOG4674|consen 1321 EELEEKENLIAELKKELNRLQE 1342 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777663
No 189
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=42.39 E-value=1.6e+02 Score=22.87 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
...+..++..+..++..+..++...+.++...
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~ 170 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQAL 170 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 190
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=42.23 E-value=58 Score=23.20 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.=+...+++|.+.|...+...+....+....+.+++..|.
T Consensus 47 kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~ 86 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLR 86 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888888888888887777777777776654
No 191
>KOG0161|consensus
Probab=42.10 E-value=3.6e+02 Score=26.85 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--C-CchhHHhhcchhHhccH----------------
Q psy14230 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM--K-DGEVYKLIGPILVKQEM---------------- 68 (110)
Q Consensus 8 ~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l--~-d~~~yKlVG~vLV~~~~---------------- 68 (110)
.++.....++....+...+......++.++.+.+..++.=+.. + +...=|+.|.....++.
T Consensus 993 ~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~ 1072 (1930)
T KOG0161|consen 993 RIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLK 1072 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666667777777666666554443 2 34566666666433321
Q ss_pred --HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 69 --EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 69 --~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..=...+..+++.....+..+.+++.+++..+.++...+
T Consensus 1073 kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1073 KKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222334444555555555555555555555554443
No 192
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=41.83 E-value=1.3e+02 Score=21.58 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 24 QKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 24 ~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+.+..++..++..-..+....++|+.+.| +. -..+..|-++++.+..+++.+-...+..++++.++
T Consensus 52 ekVq~~LgrveEetkrLa~ireeLE~l~d-P~-------------RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykea 117 (159)
T PF04949_consen 52 EKVQAQLGRVEEETKRLAEIREELEVLAD-PM-------------RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEA 117 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhcc-ch-------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34556666666666666677777775532 22 23556777888888888888877777777776665
Q ss_pred cc
Q psy14230 104 LP 105 (110)
Q Consensus 104 k~ 105 (110)
..
T Consensus 118 le 119 (159)
T PF04949_consen 118 LE 119 (159)
T ss_pred HH
Confidence 43
No 193
>KOG0250|consensus
Probab=41.76 E-value=3e+02 Score=25.70 Aligned_cols=30 Identities=10% Similarity=0.326 Sum_probs=14.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
.+.|+..++.++.++.+|...+.++.++..
T Consensus 403 ~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 403 LEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 194
>PLN02678 seryl-tRNA synthetase
Probab=41.73 E-value=2e+02 Score=23.83 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
+.+..+...|..+++.++..+..++.++.++-
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777888888888888888777643
No 195
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=41.61 E-value=17 Score=24.01 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=23.7
Q ss_pred hcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 59 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 59 VG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
+|++++-.... ...-....+.++.++.++..-+.....++..+...
T Consensus 12 ~G~~~~~~~~~--~~~~~~~~~~~~~E~~rl~~Al~~~~~eL~~l~~~ 57 (123)
T PF05524_consen 12 IGPAFVLRPPE--PEIPERHIDDIEAEIERLEQALEKAREELEQLAER 57 (123)
T ss_dssp EEEEEE-----------TTB-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccc--CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666555444 11112223566777777777777777777766654
No 196
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=41.31 E-value=1.1e+02 Score=21.02 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=8.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQ 100 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l 100 (110)
.|++.+...++....-.+.+.++.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 197
>PRK00736 hypothetical protein; Provisional
Probab=41.21 E-value=82 Score=19.12 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q psy14230 29 QRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 29 ~~~~le~q~~E~~~v~eeL~~ 49 (110)
.+..|+..+.-.+..+++|+.
T Consensus 6 Ri~~LE~klafqe~tie~Ln~ 26 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSD 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 198
>KOG0996|consensus
Probab=41.14 E-value=3.2e+02 Score=25.92 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNE 39 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E 39 (110)
+...++.....|.+++.+++.+......+.....+
T Consensus 783 le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~ 817 (1293)
T KOG0996|consen 783 LERALSKMSDKARQHQEQLHELEERVRKLRERIPE 817 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34445555555555555554444444444333333
No 199
>KOG0243|consensus
Probab=40.99 E-value=3e+02 Score=25.58 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 95 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~ 95 (110)
|.+...++++...++.+++.++...+.-+..+.. +| .+-.++...+.+-+..++.++..-..++.++...+.+
T Consensus 436 y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e-----~~--~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~ 508 (1041)
T KOG0243|consen 436 YTQEEKEKKEMAEQIEELEEELENLEKQLKDLTE-----LY--MNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQ 508 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555555554444444332 33 3444455555555555555555555555555555555
Q ss_pred HHHHH
Q psy14230 96 LDTKQ 100 (110)
Q Consensus 96 ~~~~l 100 (110)
....+
T Consensus 509 ~~~~l 513 (1041)
T KOG0243|consen 509 AKATL 513 (1041)
T ss_pred HHHHH
Confidence 55543
No 200
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=40.87 E-value=1.3e+02 Score=21.42 Aligned_cols=47 Identities=13% Similarity=0.326 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD 48 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~ 48 (110)
+..|...-.+...-+...+.++..+...+..+..+..+.=.--+.|+
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666677777777777666666665555433333333
No 201
>PRK10698 phage shock protein PspA; Provisional
Probab=40.60 E-value=1.5e+02 Score=22.00 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHH---HHHhHHHHHHHHHH--
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQN---VKKRIDYISAELKR-- 88 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~---l~~r~e~i~~~i~~-- 88 (110)
+|.........+...+..|+..+.+...=.++|.-=- -+.--+-|..++-..+.+.+... ++.+++.++.+.+.
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~ 186 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHG 186 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhh
Confidence 3334444444444444444444444444444443222 22222223333333333333333 55555555555433
Q ss_pred ------HHHHHHH------HHHHHHhhcchh
Q psy14230 89 ------HDDTIAT------LDTKQDTHLPIT 107 (110)
Q Consensus 89 ------l~~~~~~------~~~~l~e~k~~l 107 (110)
++.++.. ++.++..+|..+
T Consensus 187 ~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 187 FGKQKSLDQQFAELKADDEISEQLAALKAKM 217 (222)
T ss_pred ccCCCCHHHHHHHhhccchHHHHHHHHHHHh
Confidence 3333333 556666666543
No 202
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=40.51 E-value=2.3e+02 Score=24.19 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=29.7
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
..+.++....+..++..+..++..++.++++++++...+.
T Consensus 88 ~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 88 IKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666677777888888888888888888887776554
No 203
>PHA01750 hypothetical protein
Probab=40.50 E-value=90 Score=19.38 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
+.++...++.+...++.++.++.++.+++..
T Consensus 44 LdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 44 LDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3455566666667777777777777766543
No 204
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.38 E-value=1.4e+02 Score=21.61 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
.+.++..+..+...+..+...+.+...-+++....
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666666666666666666666665443
No 205
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.30 E-value=75 Score=22.83 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=37.4
Q ss_pred CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 52 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 52 d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
|..+++.+..+=.++....-+..|.+.++.+...+..+-+.+.++...+...
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666677777777777777777777777777777777654
No 206
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=40.15 E-value=2.7e+02 Score=24.83 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=27.1
Q ss_pred cchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 60 GPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 60 G~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+..||.+.+++|.+..+.....+......|+..+...++.+..+...+
T Consensus 497 Sa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL 544 (739)
T PF07111_consen 497 SARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQL 544 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666655555555555555555544433
No 207
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.14 E-value=81 Score=27.28 Aligned_cols=49 Identities=6% Similarity=0.095 Sum_probs=36.2
Q ss_pred hhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 58 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 58 lVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
.++.+++....+........-.+||..++..+.+++.+.+.++++++.+
T Consensus 175 ~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 175 AIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566678899999999999999999999888764
No 208
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=40.06 E-value=68 Score=20.44 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLL-SAQLNENESVQKELDL 49 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~l-e~q~~E~~~v~eeL~~ 49 (110)
|.++..+..|+.++.+++.....=... .....+...+..+|..
T Consensus 33 ~e~~~l~~~f~~~q~~~~~~q~~g~~~~~e~~~~l~~~~~~l~~ 76 (108)
T PF06133_consen 33 PEAQKLIEEFQKLQQELQNAQMYGKEPPKEEIEELQELQEELMQ 76 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHc
Confidence 668888888888888886654332222 3444444444444443
No 209
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=40.03 E-value=2e+02 Score=23.33 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHH-----
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKK----- 77 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~----- 77 (110)
.+-..+.....+|..|...+..-. +-+...++..+..|...+. =..+|+-. .-+..+..++...+..
T Consensus 4 ~~~~kl~~~~~r~~el~~~L~~p~-----v~~d~~~~~~lske~a~l~~iv~~~~~~--~~~~~~l~~a~~~l~~~~D~e 76 (363)
T COG0216 4 SLLEKLESLLERYEELEALLSDPE-----VISDPDEYRKLSKEYAELEPIVEKYREY--KKAQEDLEDAKEMLAEEKDPE 76 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcc-----cccCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCHH
Confidence 344556666666666665554331 1122222223333333222 12233311 1122234444444442
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
-.+..+.++..++..+..+++++.
T Consensus 77 m~ema~~Ei~~~~~~~~~le~~L~ 100 (363)
T COG0216 77 MREMAEEEIKELEAKIEELEEELK 100 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455666666666666666664
No 210
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=39.98 E-value=46 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHH
Q psy14230 56 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 90 (110)
Q Consensus 56 yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~ 90 (110)
+-.+||+|......-....+..++..++.-++++.
T Consensus 151 ~~~~G~~l~~~~~~~~~~~l~~~~~~~~~i~~~l~ 185 (205)
T PF04816_consen 151 ELEFGPVLLEKKDPLLKEYLQRKLRKLKRILQQLE 185 (205)
T ss_dssp HHHH-HHHHHHT-HHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHhCHHHHhccCHHHHHHHHHHHHHHHHHHHhcc
Confidence 33599999999999999999998888888777766
No 211
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=39.96 E-value=53 Score=24.35 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+..+...+..+++++++++..++.++..+...+
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l 223 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEERLESKEERL 223 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666655443
No 212
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.94 E-value=55 Score=19.10 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy14230 82 ISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 82 i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
...++.+++++++.++++++++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777777777776654
No 213
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=39.86 E-value=72 Score=20.38 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
++.++...+.+...++..+...+.+.+.-..|+++++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~E 38 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLE 38 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777777777776654
No 214
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.58 E-value=2.5e+02 Score=24.31 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHH
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAE 85 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~ 85 (110)
+...+...|..+........+.|+.++.+...-+.+... ... -.||.-+.....+-...|.++++.+..+
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~--~~~---pa~pse~E~~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP--PEP---PAGPSEVEQQLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--ccc---cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443332222111 111 1466666654444444444444444433
No 215
>KOG1655|consensus
Probab=39.57 E-value=58 Score=24.43 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
-+.|..-+..+.++-.+++++|..+..++..++..|.
T Consensus 14 ~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~ 50 (218)
T KOG1655|consen 14 PPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIK 50 (218)
T ss_pred ChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888888888888888877663
No 216
>KOG0804|consensus
Probab=39.23 E-value=2.4e+02 Score=23.85 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14230 83 SAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 83 ~~~i~~l~~~~~~~~~~l~e~ 103 (110)
...+...+.+|.++++++.++
T Consensus 427 ~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 334444444555555554443
No 217
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=38.91 E-value=1.1e+02 Score=21.15 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=28.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
=+...+++|.+.|.+.+...+....+....+.+++..|.
T Consensus 26 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~ 64 (159)
T PRK09173 26 MIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRK 64 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888887777777777766666553
No 218
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=38.82 E-value=75 Score=18.01 Aligned_cols=24 Identities=4% Similarity=0.034 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLN 38 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~ 38 (110)
+|..|..++..|.+.+..++..++
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~ 26 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLE 26 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 466666666666666666555543
No 219
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=38.80 E-value=92 Score=21.91 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=26.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+...+++|.+.|...+...++.-.+.+..+.+++..|.
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~ 81 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLA 81 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777776666666666655543
No 220
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=38.53 E-value=1.6e+02 Score=21.84 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhcc-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 23 YQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQE-MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 23 l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~-~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
...+......+.....+...+.++++.. |+.++|..=-... ...-+..+-...+.+...+.++++.+.++-++..
T Consensus 25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~----i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 25 EQELKKKYEELHKENQEMRKIMEEYEKT----IAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYE 100 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444455555555555555555555543 6666655321111 1222333445555566666666666666666666
Q ss_pred hhcchh
Q psy14230 102 THLPIT 107 (110)
Q Consensus 102 e~k~~l 107 (110)
.++.++
T Consensus 101 k~K~vi 106 (207)
T PF05010_consen 101 KQKEVI 106 (207)
T ss_pred HHHHHH
Confidence 555544
No 221
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=38.37 E-value=2.1e+02 Score=23.03 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=21.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..++++..++.++.++++.+.++.+=+.+....+
T Consensus 270 k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~ 303 (406)
T PF02388_consen 270 KKKNKLKELEEQLASLEKRIEEAEELIAEYGDEI 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEE
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3455666677777777777777776666555543
No 222
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.28 E-value=3.8e+02 Score=25.91 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD 48 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~ 48 (110)
+++.-.+|+++++.+..+.+.+..+...+.|.+.-+.+|-
T Consensus 1008 l~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 1008 LRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444445555555555555555555555555555555443
No 223
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=38.17 E-value=99 Score=19.19 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=15.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 76 KKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.+.++.+..+.+.+..+++..+.++...+
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~~k 30 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQKLK 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555656655555555554443
No 224
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=38.11 E-value=1.2e+02 Score=20.18 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCC-CchhHHhhcc
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNE-NESVQKELDLMK-DGEVYKLIGP 61 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E-~~~v~eeL~~l~-d~~~yKlVG~ 61 (110)
...-.++..|...-..+..+...|.+...- -+.+-.++-... |.++|+++++
T Consensus 60 ~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~~~~gEi~f~i~~~ 113 (117)
T COG2919 60 AAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGMSKPGEIFFRLVKP 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCCCCCEEEEeccc
Confidence 333444444444444444444444444110 123445555555 6677776654
No 225
>PRK14127 cell division protein GpsB; Provisional
Probab=37.99 E-value=1.2e+02 Score=20.27 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQK 45 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~e 45 (110)
+..-++..+..|..+..+...+..+...++..+.++..-..
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34457778888888888888888888888888888776443
No 226
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=37.84 E-value=2.4e+02 Score=23.54 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD 48 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~ 48 (110)
+-..-.+|+.+++++-.+..++.+++.++.-.-.-.++|.
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567888888888888888888888776655555554
No 227
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.80 E-value=59 Score=26.46 Aligned_cols=49 Identities=10% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 58 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 58 lVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
.+..+++.............-.+|++.++..++.++.+.+.++.+++.+
T Consensus 142 ~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 142 TLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 228
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=37.23 E-value=1.1e+02 Score=19.64 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCC--Cc-hhHHhh
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLS----AQLNENESVQKELDLMK--DG-EVYKLI 59 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le----~q~~E~~~v~eeL~~l~--d~-~~yKlV 59 (110)
|++.+.-.+.+.|+.+...+.+..+.+. .=+.|-..+-+=|.+.| |. .|.|+-
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~~~~~~~~~~~ 83 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMY 83 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3455555555555555555544444433 34467778887788777 54 566653
No 229
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=37.07 E-value=1.2e+02 Score=19.67 Aligned_cols=32 Identities=13% Similarity=0.363 Sum_probs=22.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQ 100 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l 100 (110)
+++...+..+++.|+.++..+......+...+
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777776666665544
No 230
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=36.96 E-value=1.3e+02 Score=20.12 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-Cc--hhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHH
Q psy14230 13 LNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DG--EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRH 89 (110)
Q Consensus 13 i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~--~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l 89 (110)
..+|..|+++|..|.+....+..=..+...++.|=..-| ++ +.+++ ..+++.-..-+...-.+-+..|+...+.|
T Consensus 8 ~~~l~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rL--d~aFP~G~~~~~qE~~k~m~~i~~~FKQL 85 (107)
T PRK15365 8 FSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESIL--HNLFPQGVAGVNQEAEKDLKKIVSLFKQL 85 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHCcchhhHHhHHHHHHHHHHHHHHHHH
Confidence 446777777777777777777776666666666655555 43 44442 33344433333333333344444444444
Q ss_pred HHHHHH
Q psy14230 90 DDTIAT 95 (110)
Q Consensus 90 ~~~~~~ 95 (110)
+.+++.
T Consensus 86 Et~LKn 91 (107)
T PRK15365 86 EVRLKQ 91 (107)
T ss_pred HHHHHh
Confidence 444443
No 231
>KOG4674|consensus
Probab=36.35 E-value=4.4e+02 Score=26.15 Aligned_cols=46 Identities=15% Similarity=0.367 Sum_probs=37.7
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhcc
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITSL 109 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~~ 109 (110)
++...++....++.+++.....+-+++..+.++.+++..++..+++
T Consensus 945 ~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 945 VKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446788888888999999999999999999999888888876654
No 232
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=36.28 E-value=81 Score=22.42 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=29.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+...+++|.+.|.+.++..++...+.++.+.+++..+.
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~ 89 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQR 89 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888877777766654
No 233
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.08 E-value=1.3e+02 Score=19.97 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
..+..++.....++..|+.++..+..+-..|..+-......+.++..
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667788888888888888888888888888887777777777755
No 234
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.05 E-value=1e+02 Score=18.85 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 27 LNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 27 ~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
...+..|+..+.--+..+++|+.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~ 29 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNV 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443
No 235
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=36.05 E-value=84 Score=22.05 Aligned_cols=40 Identities=10% Similarity=-0.030 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.=+...+++|.+.|...++..++.-.+.+....+++..|.
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~ 72 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAERE 72 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888888888888888877777777777776654
No 236
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.94 E-value=3e+02 Score=24.12 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.+.....+|.+|++.+.+..+...+++.+|
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444443
No 237
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.85 E-value=2.4e+02 Score=22.98 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+..+...|..+++.+++++..++.++.+.
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777777777777654
No 238
>PRK02119 hypothetical protein; Provisional
Probab=35.63 E-value=1.1e+02 Score=18.88 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 25 KVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 25 ~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
.+...+..|+..+.--+..+++|+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~ 30 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQ 30 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665554
No 239
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.44 E-value=2.1e+02 Score=22.13 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
+..+..+.++..|..++..++..|....+++.
T Consensus 74 e~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 74 EWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555555554444
No 240
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=35.39 E-value=1.4e+02 Score=19.99 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
+..-+.+|.++|++...+.+++..-...-+|...-++.+ |- =|-.=|.++...-...|...-..|+.+++.
T Consensus 21 L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~a--------FP-~G~~~~~qE~~k~m~~i~~~FKQLEt~LKn 91 (107)
T PRK15365 21 LNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNL--------FP-QGVAGVNQEAEKDLKKIVSLFKQLEVRLKQ 91 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------Cc-chhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666666555566666666655555555433 32 354556777777777788888888888888
Q ss_pred HHHH
Q psy14230 89 HDDT 92 (110)
Q Consensus 89 l~~~ 92 (110)
++.+
T Consensus 92 lnt~ 95 (107)
T PRK15365 92 LNAQ 95 (107)
T ss_pred cCCC
Confidence 7654
No 241
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=35.38 E-value=1.2e+02 Score=20.98 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
....++.|.+.|...++..++.-.+.+....+++..+
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L 83 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQEL 83 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777777666666666666666665555544
No 242
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=35.17 E-value=85 Score=23.01 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=28.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+=....++.|.++|.+.++..++.-.+.+..+.+++..+.
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~ 110 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHE 110 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366677778888888877777777777777666666553
No 243
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.99 E-value=1.1e+02 Score=21.46 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=6.5
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy14230 75 VKKRIDYISAELKRHDD 91 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~ 91 (110)
++..+....++|+.|.+
T Consensus 32 ~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333333333333
No 244
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=34.85 E-value=59 Score=26.77 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+..|.+.+..+++++++++..++.++..+.+.+
T Consensus 404 l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl 436 (462)
T PRK08032 404 IKTATDGVNKTLKKLTKQYNAVSDSIDATIARY 436 (462)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777777777666544
No 245
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.52 E-value=1.3e+02 Score=19.31 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.+.+..+...|..+++.++.++..++.++..+-
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777888888888888887776653
No 246
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=34.31 E-value=1.2e+02 Score=20.10 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 8 ~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
++.........+......+...+.-++.+..|.+..++.++.
T Consensus 58 ~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~ 99 (116)
T PF05064_consen 58 KISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEK 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777778888888888888888887766654
No 247
>PF06386 GvpL_GvpF: Gas vesicle synthesis protein GvpL/GvpF; InterPro: IPR009430 Gas vesicles provide cells with buoyancy, enabling them to remain at the water surface. These organelles are generally synthesized by halophilic archaea and cyanobacteria, as well as some other prokaryotes. A cluster of 12-14 gvp genes (gvpMLKJIHGFEDACNO)is responsible for gas vesicle synthesis in Halobacterium sp. []. GvpF and GvpL are essential for gas vesicle formation and display sequence similarity to one another, both containing predicted coiled-coil domains that are often involved in self-oligomerisation; and are structural components of the vesicle [].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=34.23 E-value=1.1e+02 Score=22.80 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14230 33 LSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDD 91 (110)
Q Consensus 33 le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~ 91 (110)
+......|..|++++.....-.++| .|.++ .+.+++...|..+-+.+...+.++..
T Consensus 58 l~~~a~~H~~Vle~l~~~~tvLP~r-FGtv~--~~~~~l~~~L~~~~~~~~~~L~~l~g 113 (249)
T PF06386_consen 58 LERWALAHQRVLEALMEQGTVLPMR-FGTVF--SSEEELRELLAENYDEFRAALDRLEG 113 (249)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeeee-Ccccc--CCHHHHHHHHHHhHHHHHHHHHHcCC
Confidence 6667789999999999864567888 89888 77889999999999999988888764
No 248
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.21 E-value=2.2e+02 Score=22.09 Aligned_cols=27 Identities=7% Similarity=0.292 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+.++.+..-...++.+...++.+..++
T Consensus 169 ~~~e~l~al~~e~e~~~~~L~~qk~e~ 195 (265)
T COG3883 169 DKLETLVALQNELETQLNSLNSQKAEK 195 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 249
>PRK04406 hypothetical protein; Provisional
Probab=34.19 E-value=1.2e+02 Score=18.86 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 26 VLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 26 l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
+...+..|+..+.--+..+++|+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~ 32 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELND 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666655554
No 250
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.85 E-value=2.8e+02 Score=23.07 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 28 NQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 28 ~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
..+-.++.+...+..-.++|... -..+=|.||-++.+... ..+.+......|..+++.++..+.+++.+++++-
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~-rn~~sk~ig~~~~~~~~--~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAE-RNELSKEIGRALKRGED--DAEELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33334444444443333333321 22444557755554333 4556667777788888888888888888876653
No 251
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.78 E-value=1.3e+02 Score=24.09 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
.-+..++.|+..++..+..+...++.+++.+..+...
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~k 180 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDK 180 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555554443
No 252
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=33.50 E-value=1.7e+02 Score=20.53 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.-+..+++...+.+..+++++...-+..+.+...++.-|
T Consensus 46 ~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL 84 (162)
T PF05565_consen 46 AKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYL 84 (162)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888888888888888887777776654
No 253
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=33.24 E-value=1e+02 Score=24.65 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQ 29 (110)
Q Consensus 1 m~~~~~~~~Q~~i~~~q~lq~~l~~l~~~ 29 (110)
+++.+|+.++..+..++.+|.++..+..+
T Consensus 31 ~i~~Lp~~~~~rv~aL~~lQ~e~~~le~e 59 (337)
T PTZ00007 31 KLSHLTDEQRETLKKLQLLQKEFDDLEVE 59 (337)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999888776
No 254
>PRK04325 hypothetical protein; Provisional
Probab=33.14 E-value=1.2e+02 Score=18.68 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 26 VLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 26 l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
+...+..|+..+.-.+..+++|+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~ 30 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNA 30 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666655554
No 255
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.10 E-value=2.2e+02 Score=21.62 Aligned_cols=92 Identities=16% Similarity=0.313 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCC-C--chhHHhhcchhHh------ccHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLN-----QRQLLSAQLNENESVQKELDLMK-D--GEVYKLIGPILVK------QEMEEAK 72 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~-----~~~~le~q~~E~~~v~eeL~~l~-d--~~~yKlVG~vLV~------~~~~ea~ 72 (110)
..+--.|.++|+++.++..-.+ -+..|..-..-.+..++-++.++ . .+-|--.|-..-. ..+.++.
T Consensus 45 ~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~ 124 (233)
T PF04065_consen 45 ADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEAR 124 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHH
Confidence 3455677788888877755433 11222222222233333344444 3 3666666633211 2245666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
.-|..-++.|..+++.++..+..+..
T Consensus 125 ~wl~~~Id~L~~QiE~~E~E~E~L~~ 150 (233)
T PF04065_consen 125 DWLKDSIDELNRQIEQLEAEIESLSS 150 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66776677777666666666665543
No 256
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=32.98 E-value=1e+02 Score=21.81 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.-+...++.|-+.|...++..++...+.+....+++..|.
T Consensus 41 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~ 80 (173)
T PRK13453 41 GPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLK 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677788888888888777777777777666666553
No 257
>PRK09039 hypothetical protein; Validated
Probab=32.86 E-value=2.5e+02 Score=22.25 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 14 NLFKQCQKEYQKVLNQRQLLSAQLNENESVQ 44 (110)
Q Consensus 14 ~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~ 44 (110)
..|...+.+...|.+++..|..++...+..+
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433333333
No 258
>KOG0933|consensus
Probab=32.85 E-value=4.2e+02 Score=24.85 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
+......+.|+.++-+...+...+.-.+.++..++.-++.|+.
T Consensus 808 ~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~ 850 (1174)
T KOG0933|consen 808 KELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKS 850 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777777766666654
No 259
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=32.73 E-value=3.2e+02 Score=23.44 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-CC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 12 ELNLFKQCQKEYQKVLNQRQLLSAQLNENESV-QKELDL-MK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 12 ~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v-~eeL~~-l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
.+..|++|.++++......+.|...+.....+ ++..++ +. |...+. ..+..++-++...++.++.+++.
T Consensus 408 ~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~~~~--------~~vnn~ki~l~~~ieki~~~l~~ 479 (543)
T COG1315 408 IVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKESLL--------TAVNNTKITLRNSIEKIKAELEG 479 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcHHHH--------HhhhhhhccHHHHHHHHHHHHHH
Confidence 46678888888888888888888777777776 221111 12 222221 23445555555555556655555
Q ss_pred HHHHH
Q psy14230 89 HDDTI 93 (110)
Q Consensus 89 l~~~~ 93 (110)
++..+
T Consensus 480 lqe~l 484 (543)
T COG1315 480 LQEEL 484 (543)
T ss_pred HHHHH
Confidence 55443
No 260
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.67 E-value=1.3e+02 Score=22.08 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=25.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
-+...|++|.+.|...++..++.-.+.++...++...|
T Consensus 77 pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L 114 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQEL 114 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777776666666666665554
No 261
>PF15205 PLAC9: Placenta-specific protein 9
Probab=32.51 E-value=1.3e+02 Score=18.79 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=26.5
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
|+.-.+=+.+.+++.+|.++.+++.|=..+.++..
T Consensus 23 v~~RLdviEe~veKTVEhLeaEvk~LLg~leelaw 57 (74)
T PF15205_consen 23 VHSRLDVIEETVEKTVEHLEAEVKGLLGLLEELAW 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445667778888888999999888888877653
No 262
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=32.49 E-value=1.4e+02 Score=19.19 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=19.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
...|+..++.|...++.|+.+-..+..++.++
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35566666666666666666666665555543
No 263
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.48 E-value=2.7e+02 Score=22.61 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=23.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
...+..+...|..+++.++.++..++.++.+.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888888888888877664
No 264
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=32.37 E-value=49 Score=24.09 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=28.6
Q ss_pred hhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14230 54 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDD 91 (110)
Q Consensus 54 ~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~ 91 (110)
.|=+ =|..|+..|.++....+..+++.|..++.+..+
T Consensus 134 ~Cp~-Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~~ 170 (176)
T COG1675 134 TCPK-CGEDLEEYDSSEEIEELESELDELEEELERNDK 170 (176)
T ss_pred CCCC-CCchhhhccchHHHHHHHHHHHHHHHHHhcccc
Confidence 3444 688888888888888888888888888776554
No 265
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.30 E-value=2.1e+02 Score=21.22 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 26 VLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 26 l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
+..+..-+.--+...+.|-+||+.+.
T Consensus 48 L~~q~~s~Qqal~~aK~l~eEledLk 73 (193)
T PF14662_consen 48 LRKQLKSLQQALQKAKALEEELEDLK 73 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555554
No 266
>KOG4571|consensus
Probab=32.13 E-value=1.4e+02 Score=23.63 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+-+....+++...++.++++-+.|..+...++++|+-+|+-|
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777888888888888888888888888877654
No 267
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=31.96 E-value=1.7e+02 Score=20.13 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=30.7
Q ss_pred hhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 62 ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 62 vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
++-+..++++...+...+..++.++..|+-+.+...++..
T Consensus 12 ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 12 IVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp E--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445577888889999999999888888888887777654
No 268
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.87 E-value=1.6e+02 Score=19.80 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
+......+.+...+++++..+...+.++..
T Consensus 90 ~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 90 EESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 269
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.69 E-value=1.2e+02 Score=18.22 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNE 39 (110)
Q Consensus 8 ~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E 39 (110)
.++..|..=|.++.++.++.+....++..+.+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqe 36 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQE 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 270
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.67 E-value=1.8e+02 Score=20.37 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
.|...+.++..+..++..+..++.+.+.-++.|+.-
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~ 49 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS 49 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345577888888889999999999999888888874
No 271
>PHA02047 phage lambda Rz1-like protein
Probab=31.66 E-value=1.6e+02 Score=19.59 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhc
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQ 66 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~ 66 (110)
+-.++...-.+|..+|++..++..+ -+.+-+|...+++.=..-.|+++=--|+..|.++
T Consensus 39 la~qLE~a~~r~~~~Q~~V~~l~~k---ae~~t~Ei~~aL~~n~~WaD~PVPpaV~~~Lck~ 97 (101)
T PHA02047 39 QTARLEALEVRYATLQRHVQAVEAR---TNTQRQEVDRALDQNRPWADRPVPPAVVDSLCKR 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCcccCCCChHHHHHHHHH
Confidence 3444555555666666666666555 4555566666665544433665555577777665
No 272
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.46 E-value=82 Score=19.76 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=12.0
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
..+++.+...|..|+......+..
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~ 46 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRE 46 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555444444
No 273
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=31.15 E-value=1.6e+02 Score=21.08 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
-+...+++|.+.|...++..+..-.+.+....++...|
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L 92 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKAL 92 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777776666666666555555555554444
No 274
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.92 E-value=1.2e+02 Score=17.93 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 12 ELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKEL 47 (110)
Q Consensus 12 ~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL 47 (110)
.+..+.+++.++..+..++..+..+..+.+.-++.|
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777666666666555555444444
No 275
>PF13166 AAA_13: AAA domain
Probab=30.83 E-value=3.4e+02 Score=23.12 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14230 80 DYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 80 e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
..+...++.+...+..+.+++.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~i~ 448 (712)
T PF13166_consen 427 NSLEKKLKKAKEEIKKIEKEIK 448 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 276
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=29.92 E-value=1.3e+02 Score=19.38 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHhhcchhHhccHH
Q psy14230 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK--DGEVYKLIGPILVKQEME 69 (110)
Q Consensus 8 ~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~--d~~~yKlVG~vLV~~~~~ 69 (110)
.++..|.=|.++-.++.--...+.+++..+++|..-..-+.-++ +....++||.++.+.-..
T Consensus 11 ni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~lVDGvPaQGG~~~~i~~~~i~~~a~~ 74 (85)
T PF07240_consen 11 NIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENNLVDGVPAQGGFWGKIVKKIISPAAKS 74 (85)
T ss_pred hHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhhcccCcCCCCCchHHHHHHHHHHHHHH
Confidence 47788888888888877777889999999999988777677777 556667777777765443
No 277
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.66 E-value=1.2e+02 Score=21.84 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
+....++.+.+.+..+++.++..+..+
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~k 111 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQK 111 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 278
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.57 E-value=2.7e+02 Score=21.55 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=15.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.++.....++...+++...+.++.+++.++-..+
T Consensus 174 ~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 174 RLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 3333344444444444445555555555554443
No 279
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=29.55 E-value=1.7e+02 Score=19.15 Aligned_cols=36 Identities=8% Similarity=0.236 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+++-+..|...++.+..++..+..++..+..++..+
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344444444444555555555555444444444443
No 280
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=29.49 E-value=1.8e+02 Score=19.52 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=26.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.+....+..+++.++.++..+......+...+..|.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (133)
T cd04787 78 PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQWQ 113 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888877777777776653
No 281
>PRK06798 fliD flagellar capping protein; Validated
Probab=29.43 E-value=65 Score=26.48 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=19.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 76 KKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
..|.+.|+.+++++++++.+++.+++...+.
T Consensus 378 ~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~ 408 (440)
T PRK06798 378 GERSKSIDNRVSKLDLKITDIDTQNKQKQDN 408 (440)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777777766666666555444
No 282
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=29.38 E-value=1.2e+02 Score=17.37 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
+..++...+..+++.|..++..+..-...+
T Consensus 33 ~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 33 PCADRRALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777666544443
No 283
>PTZ00464 SNF-7-like protein; Provisional
Probab=29.29 E-value=87 Score=23.29 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..+++...+..+..+++.+++++..++.++..+++.+
T Consensus 12 p~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 12 PKPTLEDASKRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777777766554
No 284
>KOG2196|consensus
Probab=29.28 E-value=2.7e+02 Score=21.53 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 17 q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
++|.+.++-+.++.+.|+.-+.+++.-.+.+.- .+| -...+.-....-...+.|..+++++..-++.+
T Consensus 130 krLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g----~~~--------~~~~D~eR~qty~~a~nidsqLk~l~~dL~~i 197 (254)
T KOG2196|consen 130 KRLDQELEFILSQQQELEDLLDPLETKLELQSG----HTY--------LSRADVEREQTYKMAENIDSQLKRLSEDLKQI 197 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----chh--------hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 466677777777777777777777776665222 011 11122222233344455555555555555555
Q ss_pred HHHHHhh
Q psy14230 97 DTKQDTH 103 (110)
Q Consensus 97 ~~~l~e~ 103 (110)
-+.|+..
T Consensus 198 i~~lN~~ 204 (254)
T KOG2196|consen 198 IKSLNTM 204 (254)
T ss_pred HHHHHhc
Confidence 5555543
No 285
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.25 E-value=1.3e+02 Score=22.46 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
..+..+..++..++..+..+.+++.+++.
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd 82 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKD 82 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 286
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=28.81 E-value=1.3e+02 Score=21.14 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
=....+++|-+.|...++..++...+.+....+.+..|
T Consensus 46 Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L 83 (167)
T PRK08475 46 PLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKL 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776666666666665554
No 287
>KOG2911|consensus
Probab=28.75 E-value=3.5e+02 Score=22.63 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
.|++-...|..++..|+.+.+.++... +.++| -|+-=+-.+.-.++..++++++-....+.+++.-+..+
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~--------r~~~k-~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~I 306 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKL--------RQALK-EGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQI 306 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456666777778888888887777766 67788 78877777778888888888877777777666555444
No 288
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=28.59 E-value=1.7e+02 Score=23.14 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+.....-+..+..++++++.|++++...++++..+..
T Consensus 144 ed~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWg 180 (308)
T PF06717_consen 144 EDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWG 180 (308)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444444556666777777777777777777766543
No 289
>KOG3129|consensus
Probab=28.56 E-value=1.2e+02 Score=22.98 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKE 46 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~ee 46 (110)
....++.+|..++.+++++++++..|++.
T Consensus 18 ~~~~~~~eLm~~K~eiE~qin~~~~vL~~ 46 (231)
T KOG3129|consen 18 NTKSELKELMDKKTEIETQINELVEVLEN 46 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677889999999999999999999953
No 290
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=28.32 E-value=2e+02 Score=19.75 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
-+...+++|.+.|.+.++..+..-.+..+...+++..|
T Consensus 29 pi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l 66 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNEREL 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777666666666666665554
No 291
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.30 E-value=55 Score=21.59 Aligned_cols=36 Identities=8% Similarity=0.276 Sum_probs=19.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
...++.+...++++++..+..+..++.++..++.++
T Consensus 46 ~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 46 RAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566655555555555555555555443
No 292
>PHA02096 hypothetical protein
Probab=28.24 E-value=51 Score=21.37 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=30.3
Q ss_pred CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 52 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 52 d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
|..+|-..|+|+++-+-++|..++.+-.+.|..=++.
T Consensus 19 ~gnl~g~~~gv~fh~swe~a~~~~~~ak~~i~eylkg 55 (103)
T PHA02096 19 SGNLHGAFGGVMFHDSWEEADVSLKNAKKSIEEYLKG 55 (103)
T ss_pred cCcccccccceEEeccHHHhhhHHHHHHHHHHHHhcc
Confidence 4567888999999999999999999888877765543
No 293
>PRK14158 heat shock protein GrpE; Provisional
Probab=28.19 E-value=1.9e+02 Score=21.28 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.++....++.+++.++.++..+..++..+...+..++...
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~ 77 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRV 77 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888888888888888887777776653
No 294
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.10 E-value=2.4e+02 Score=20.59 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQK 25 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~ 25 (110)
+|.-++..-++...|+.++..
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~ 79 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 343333333333334333333
No 295
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=27.94 E-value=1.9e+02 Score=19.40 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+...++.|-+.|.+.++..+..-.+......++...|
T Consensus 20 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l 56 (147)
T TIGR01144 20 LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVIL 56 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666655555555444
No 296
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.55 E-value=3.8e+02 Score=22.65 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAEL 86 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i 86 (110)
+.+-..+.++++++.+++.+..+-..|..+ |+....--.. +=++ | ...+.-+...+....+.+..++
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~e---N~~L~~r~~~----id~~-i-----~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAE---NERLQKREQS----IDQQ-I-----QQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhh----HHHH-H-----HHHHHhhhHHHHHHHHHHHHHH
Confidence 346778889999999998887776665544 3333322222 2222 2 2223334456666777777777
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy14230 87 KRHDDTIATLDTKQDTH 103 (110)
Q Consensus 87 ~~l~~~~~~~~~~l~e~ 103 (110)
..+...+.+++.++..+
T Consensus 126 ~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 126 QQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 78888888887777543
No 297
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.52 E-value=1.5e+02 Score=18.16 Aligned_cols=39 Identities=8% Similarity=0.220 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
...+..|.......+..+..+.+.+.+...++..++..+
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555566666666666666666666655544
No 298
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=27.48 E-value=1.4e+02 Score=17.61 Aligned_cols=9 Identities=44% Similarity=0.947 Sum_probs=5.2
Q ss_pred hhHHhhcch
Q psy14230 54 EVYKLIGPI 62 (110)
Q Consensus 54 ~~yKlVG~v 62 (110)
.-|+-||+|
T Consensus 64 ~~Wk~iG~v 72 (77)
T PF03993_consen 64 QEWKEIGPV 72 (77)
T ss_pred HHHHHcCCC
Confidence 456666654
No 299
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.07 E-value=1.9e+02 Score=19.08 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+..+++.+...+..++.++.+++.-+..+..
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 78 LEKMLEKIEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544443
No 300
>PF14182 YgaB: YgaB-like protein
Probab=27.02 E-value=1.7e+02 Score=18.59 Aligned_cols=64 Identities=16% Similarity=0.349 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIA 94 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~ 94 (110)
|.+|=.+.-+...++=-|.+++.-+.-+-.+|..+. ++ .+.+|..+|.+..+.++
T Consensus 2 F~~LV~eQm~tMD~LL~LQsElERCqeIE~eL~~l~~ea------------------------~l~~i~~EI~~mkk~Lk 57 (79)
T PF14182_consen 2 FDKLVSEQMKTMDKLLFLQSELERCQEIEKELKELEREA------------------------ELHSIQEEISQMKKELK 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------hHHHHHHHHHHHHHHHH
Confidence 445555555555556666666666666665555554 33 33445566666666666
Q ss_pred HHHHHHHhh
Q psy14230 95 TLDTKQDTH 103 (110)
Q Consensus 95 ~~~~~l~e~ 103 (110)
++++-+..-
T Consensus 58 ~Iq~~Fe~Q 66 (79)
T PF14182_consen 58 EIQRVFEKQ 66 (79)
T ss_pred HHHHHHHHH
Confidence 666555443
No 301
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.01 E-value=1.7e+02 Score=18.51 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
.......++.+++.++.++..+...+.-...++.=
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666665555543
No 302
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.76 E-value=2.8e+02 Score=20.82 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
.....+...|+.+...+..+..++..-..|++...+-|...
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444555555555556566665555556665555555443
No 303
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.74 E-value=1.7e+02 Score=18.39 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=13.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
++++++.+..++..++.++.+.+.
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666655555544
No 304
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.61 E-value=4.7e+02 Score=23.40 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCC
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQ--RQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~--~~~le~q~~E~~~v~eeL~~l~ 51 (110)
.+.+...+..+.+...++..+..+ ...+..++..++....+|....
T Consensus 528 ~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~~le~~~~~l~~~~ 575 (908)
T COG0419 528 KEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELL 575 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666555555 4555555555555555555544
No 305
>PRK14143 heat shock protein GrpE; Provisional
Probab=26.58 E-value=2e+02 Score=21.85 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..+....++.+++.++.+++.+..++-.+...+..+++..
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888888888888888888888887777654
No 306
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=26.58 E-value=5.3e+02 Score=24.02 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=31.2
Q ss_pred HHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 56 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 56 yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+..++++.+..+..++...+..++..+..-+........++.+.+..++..+
T Consensus 878 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l 929 (1201)
T PF12128_consen 878 LEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKKAVERFKGVL 929 (1201)
T ss_pred HhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334666666666666666666666666666666666666666665555443
No 307
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.39 E-value=2.1e+02 Score=19.22 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKEL 47 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL 47 (110)
..+..++.....++..|+..+..+..+-..|..+-.-....+.++
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777888888888888888888888887777777777766
No 308
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=26.27 E-value=1.3e+02 Score=21.08 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENE 41 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~ 41 (110)
+.+....+-.+|+-|+.+++.+......+-+++.|..
T Consensus 21 ~~es~drIKeEf~~lqaq~hslk~E~eKla~EK~emq 57 (135)
T PF03920_consen 21 TSESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQ 57 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHH
Confidence 5666777778888888888888777777766666544
No 309
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.13 E-value=2.2e+02 Score=21.31 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
..+..|.++.++...|..+...+..+..+++....|.+.+
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L 105 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRLQELEQLEAENARL 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777888888888888888777777776665
No 310
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=26.09 E-value=1.6e+02 Score=17.93 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhc--cHHHHHHH
Q psy14230 28 NQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQ--EMEEAKQN 74 (110)
Q Consensus 28 ~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~--~~~ea~~~ 74 (110)
.++..++..+.....=+++++.-| +.+.|. =---||.. |.+|....
T Consensus 5 ~~l~~l~~~l~~l~~~~~~~~~~d~~~~~Y~-~A~klv~~Ga~~~el~~~ 53 (70)
T PF10975_consen 5 QRLAELEQQLKQLEDQQEELEQRDPDSPLYS-QAIKLVRQGASVEELMEE 53 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcchHH-HHHHHHHcCCCHHHHHHH
Confidence 444555555566666666667778 888886 33334444 44444443
No 311
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.98 E-value=2.7e+02 Score=20.53 Aligned_cols=23 Identities=4% Similarity=0.085 Sum_probs=9.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 74 NVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
.+...++.+..+++.++.+..++
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443333
No 312
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=25.81 E-value=2.3e+02 Score=21.50 Aligned_cols=32 Identities=6% Similarity=0.298 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTK 99 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~ 99 (110)
+.++...|...+..++.....+..++..+.++
T Consensus 206 L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E 237 (254)
T PF15458_consen 206 LSECLERLRESLSSLEDSKSQLQQQLESLEKE 237 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444444444444444333
No 313
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=25.81 E-value=1.6e+02 Score=20.34 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=23.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+...+++|-+.|.+.++..++.-.+.+....++...|
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l 69 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLL 69 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777666666666665555555444
No 314
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.67 E-value=1e+02 Score=26.04 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQ 100 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l 100 (110)
+++.|+++++.|+++..++.+++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 55555555555555554444443
No 315
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=25.64 E-value=2.1e+02 Score=19.07 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+.+++...+..+++.++.++..+......+......+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (127)
T TIGR02047 76 SCSDVNALLDEHISHVRARIIKLQALIEQLVDLRGRC 112 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777788888888877777777766554433
No 316
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=25.61 E-value=2.3e+02 Score=19.46 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHH
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYK 57 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yK 57 (110)
+|++.++.-..+...+..+.....+.+.-+..|....+.+.||
T Consensus 46 r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk 88 (126)
T PF09403_consen 46 RYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHH
Confidence 3444444444444444444444444444444444433455565
No 317
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.44 E-value=4e+02 Score=22.17 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
+......+...-.++++|+.++..+...+..++.++.+...-+++++.
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~ 94 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
No 318
>KOG3501|consensus
Probab=25.27 E-value=2.2e+02 Score=19.22 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHh------hcchhHhc-cHHHHHHHHHHhHHHHHHHHHHHH
Q psy14230 19 CQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKL------IGPILVKQ-EMEEAKQNVKKRIDYISAELKRHD 90 (110)
Q Consensus 19 lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKl------VG~vLV~~-~~~ea~~~l~~r~e~i~~~i~~l~ 90 (110)
.--+...+...+...+--..|+..+.+|=..-. =...|=+ .|...-+. +..+.++.|.+..+|+++.....+
T Consensus 22 ~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE 101 (114)
T KOG3501|consen 22 IMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAE 101 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777777777778888888764433 2233332 12222222 568899999999999999999999
Q ss_pred HHHHHHHH
Q psy14230 91 DTIATLDT 98 (110)
Q Consensus 91 ~~~~~~~~ 98 (110)
..+.++-.
T Consensus 102 ~nLrellq 109 (114)
T KOG3501|consen 102 QNLRELLQ 109 (114)
T ss_pred HHHHHHHH
Confidence 88877643
No 319
>KOG0994|consensus
Probab=25.26 E-value=2.2e+02 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+.++.|+.+...+...++++.+++..++.
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777777777777777777777766654
No 320
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.14 E-value=3.4e+02 Score=21.26 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
..+-....+..++..++.-...++..+++
T Consensus 106 ~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 106 LELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555443
No 321
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=25.11 E-value=92 Score=27.16 Aligned_cols=33 Identities=6% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+..|.+.|..+++++++++.+++.+++.+.+.+
T Consensus 598 i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl 630 (661)
T PRK06664 598 IYNKVKGLDERIADNNKKIEEYEKKLESKERKL 630 (661)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777888888888887777777766554
No 322
>PRK13676 hypothetical protein; Provisional
Probab=24.99 E-value=2e+02 Score=18.68 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVL 27 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~ 27 (110)
|..+..+..|+..|.+++...
T Consensus 36 ~~a~~li~~F~~~q~~~~~~q 56 (114)
T PRK13676 36 EEAKKLFDEFRALQLEIQQKQ 56 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888886554
No 323
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.76 E-value=1.9e+02 Score=19.59 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhc
Q psy14230 20 QKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIG 60 (110)
Q Consensus 20 q~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG 60 (110)
..++.++......+|+...-.+.-..|.+..- |-+-||+.|
T Consensus 39 hrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~rwklmG 80 (112)
T PF07439_consen 39 HRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVKRWKLMG 80 (112)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHHHHHHhc
Confidence 34455666666666766666666677777777 667777655
No 324
>PRK07737 fliD flagellar capping protein; Validated
Probab=24.68 E-value=93 Score=26.00 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.|.+.|..+++++++++..++.+|+.+.+.+
T Consensus 441 ~~~~~l~~~i~~l~~~i~~~~~rl~~~e~ry 471 (501)
T PRK07737 441 NQQFAIGKDLNQIETQIDRFQDRLKQIEDRY 471 (501)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777766655543
No 325
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.63 E-value=2.1e+02 Score=18.67 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.++....+..+++.|+.++..+......+..-+..+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (123)
T cd04770 77 CAEVRALLEEKLAEVEAKIAELQALRAELAGLLSAC 112 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777788877777777766666555443
No 326
>KOG3478|consensus
Probab=24.54 E-value=2.4e+02 Score=19.29 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHH
Q psy14230 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK--DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAE 85 (110)
Q Consensus 8 ~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~--d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~ 85 (110)
..|+.-.....+-...+++..+++.-..=+.|.+.+-..=.--. +.+.-| ..--=.+.+++..++.++..+.-.+..
T Consensus 13 kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvk-qel~EAr~nV~kRlefI~~Eikr~e~~ 91 (120)
T KOG3478|consen 13 KYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVK-QELEEARTNVGKRLEFISKEIKRLENQ 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555554433322222 333333 333334455666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q psy14230 86 LKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 86 i~~l~~~~~~~~~~l~e~k 104 (110)
+...++........+-.++
T Consensus 92 i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 92 IRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666655555555444443
No 327
>KOG4552|consensus
Probab=24.49 E-value=2.4e+02 Score=21.55 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=28.0
Q ss_pred CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 52 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 52 d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
|...-++.--+.=.+...++...|+..+|.-...|..|++.+++++-
T Consensus 56 d~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~ 102 (272)
T KOG4552|consen 56 DDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEV 102 (272)
T ss_pred cHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333334344444556666677777777777777777777666654
No 328
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.29 E-value=1.4e+02 Score=23.27 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=25.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 76 KKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
....+|++.++..+..++.+.+.++.+++..
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466789999999999999999988888764
No 329
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=24.09 E-value=1.9e+02 Score=18.26 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 80 DYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 80 e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
..|+.+++++...|..++.++++-
T Consensus 29 gd~e~eLerCK~sirrLeqevnkE 52 (79)
T PF09036_consen 29 GDIEQELERCKASIRRLEQEVNKE 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888887753
No 330
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.00 E-value=2.6e+02 Score=19.57 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQK 45 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~e 45 (110)
....++++..+..++.+++....++..-+.
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 331
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=23.97 E-value=2e+02 Score=20.37 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=38.0
Q ss_pred HHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14230 45 KELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 95 (110)
Q Consensus 45 eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~ 95 (110)
.+...-+ |..+++..|..|=..|.+.-...++--++.++.+++........
T Consensus 98 ~~~~L~~~d~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L~~~~~~a~~~~~k 149 (170)
T TIGR02833 98 KQTALQKSEKEILLQFGKTLGESDREGQQKHINLTLEHLERQLTEAEDEQKK 149 (170)
T ss_pred hccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445 77899999999999999988888887777777777666554443
No 332
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=23.94 E-value=1.9e+02 Score=20.51 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=38.3
Q ss_pred HHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14230 45 KELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 95 (110)
Q Consensus 45 eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~ 95 (110)
.....-+ |..+++..|..|=..|.+.-...++--++.++.+++........
T Consensus 99 ~~~~L~~~d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~~~~~~a~~~~~k 150 (171)
T PRK08307 99 KNTALKKEDIEILLQFGKTLGQSDREGQQKHIRLALEHLEREEEEAEEEQKK 150 (171)
T ss_pred hccCCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445 77899999999999999988888887777777777666655443
No 333
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=23.85 E-value=1.7e+02 Score=22.81 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
....++.++..+..+.+.+++++..+.+++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666777777777776666666666554
No 334
>PRK11530 hypothetical protein; Provisional
Probab=23.74 E-value=2.1e+02 Score=21.02 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLN 38 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~ 38 (110)
++++.+.-++..+|+++++.+..+-..++-|-.
T Consensus 23 q~ev~ql~~~vs~LNqem~~Lt~qa~aleqQn~ 55 (183)
T PRK11530 23 QSEVRQMHNSVSTLNQEMTQLTQQAVAIEQQNR 55 (183)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888999999998888888776643
No 335
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.71 E-value=4.8e+02 Score=22.54 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
+..+.+.+.++.+...+...+..-+..... ...+++.++
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~q---L~~e~e~~~ 481 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQ---LVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCC
Confidence 334445555555555555555544444333 334566666
No 336
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.70 E-value=4e+02 Score=21.67 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIA 94 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~ 94 (110)
|..+..+..+..++..+..+++.++
T Consensus 76 em~ema~~Ei~~~~~~~~~le~~L~ 100 (363)
T COG0216 76 EMREMAEEEIKELEAKIEELEEELK 100 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544
No 337
>PRK14624 hypothetical protein; Provisional
Probab=23.68 E-value=1.3e+02 Score=20.41 Aligned_cols=17 Identities=6% Similarity=0.247 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14230 9 LENELNLFKQCQKEYQK 25 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~ 25 (110)
++....+.+++|.++++
T Consensus 8 m~~~mkqAq~mQ~km~~ 24 (115)
T PRK14624 8 MSEALSNMGNIREKMEE 24 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 338
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.60 E-value=3.8e+02 Score=21.30 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHH
Q psy14230 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRH 89 (110)
Q Consensus 17 q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l 89 (110)
-.++.+..++-.++..=-..+.++++-+++++.+ ||.++-++=|..+.......=..+...|.....+.
T Consensus 72 V~iRkrv~~i~Nk~e~dF~~l~~yNdYLE~vEdi----i~nL~~~~d~~~te~~l~~y~~~n~~~I~~n~~~~ 140 (309)
T TIGR00570 72 VDIRKRVLKIYNKREEDFPSLREYNDYLEEVEDI----VYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKS 140 (309)
T ss_pred HHHHHHHHHHHccchhccCCHHHHHHHHHHHHHH----HHHhhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456666666666555555788899999888876 99999998777766666555555566665444433
No 339
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=23.58 E-value=1.7e+02 Score=21.79 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+...+++|-+.|...++..++...+......+++..+
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 66 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADTKKREAEQERREYEEKN 66 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777766666666666655554
No 340
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=23.53 E-value=2.5e+02 Score=19.24 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=29.0
Q ss_pred HHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 56 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 56 yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
|++.+|-.|..-.++-...+...++..+......+....+.+.++.+.+.
T Consensus 19 ~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ 68 (159)
T PRK09173 19 VYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEK 68 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344456666666666666666666666666666666665543
No 341
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.46 E-value=2.7e+02 Score=20.08 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=22.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
++..|++.++.....+..++++++..++.+-+.+
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~v 115 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDV 115 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456677777777777777777777666655443
No 342
>KOG0963|consensus
Probab=23.10 E-value=5.2e+02 Score=22.69 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYK 57 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yK 57 (110)
++....+-..+..++.++...+..++.+........+.+....+..|-+
T Consensus 116 ~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ 164 (629)
T KOG0963|consen 116 QQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIF 164 (629)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 3344555667777788888888888887777777777777765333333
No 343
>KOG0804|consensus
Probab=22.91 E-value=4.7e+02 Score=22.14 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
-....+++..++..+.....++++.++++.|+
T Consensus 414 vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 414 VWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677777777777777777654
No 344
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=22.82 E-value=2.5e+02 Score=18.96 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+.+++...+..+++.|..+++.+......+...+..+..
T Consensus 75 ~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~~ 113 (131)
T cd04786 75 QHDELLAALERKVADIEALEARLAQNKAQLLVLIDLIES 113 (131)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446777788888888888888888777777766665543
No 345
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=22.81 E-value=83 Score=18.52 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=8.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q psy14230 76 KKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~ 96 (110)
-.|++.+..+|+.|++.+.++
T Consensus 27 ~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 27 LGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444443
No 346
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=22.74 E-value=3.2e+02 Score=20.10 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQ 100 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l 100 (110)
++..|+-.|...++.|++....++.++.......
T Consensus 24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~A 57 (191)
T PTZ00446 24 EIYKAILKNREAIDALEKKQVQVEKKIKQLEIEA 57 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777777776655543
No 347
>PRK10722 hypothetical protein; Provisional
Probab=22.73 E-value=3.2e+02 Score=21.07 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 8 KLENELNLFKQC----QKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 8 ~~Q~~i~~~q~l----q~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
++...-.+|++| -.++..+..+...+..+++....=+|-|..++
T Consensus 159 ~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIE 206 (247)
T PRK10722 159 ALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIE 206 (247)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666789999 77888899999999999988888888776654
No 348
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=22.72 E-value=2.3e+02 Score=20.94 Aligned_cols=33 Identities=3% Similarity=0.236 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
.-....+..++..+..+++.++.++...+..+.
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~ 224 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLR 224 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666665555443
No 349
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.62 E-value=5.5e+02 Score=22.78 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHH---hHHHHHHH
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQ-LNEN-ESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKK---RIDYISAE 85 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q-~~E~-~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~---r~e~i~~~ 85 (110)
..-.-++.++.=+.....++..+-.+ .++. +.|...|+.. +..++.-|...+ +.+...+...+.. .+..+...
T Consensus 177 ~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~-~~~lg~~i~~~l-~~~~~~~L~~i~~l~~~~~~~~~~ 254 (806)
T PF05478_consen 177 TVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSSDLDNI-GSLLGGDIQDQL-GSNVYPALDSILDLAQAMQETKEL 254 (806)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666 5554 4556666554 233333222222 1222222222222 44444444
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy14230 86 LKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 86 i~~l~~~~~~~~~~l~e~k~ 105 (110)
+.+++....++.....+++.
T Consensus 255 L~~v~~~~~~L~~~~~qL~~ 274 (806)
T PF05478_consen 255 LQNVNSSLKDLQEYQSQLRD 274 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 350
>KOG0161|consensus
Probab=22.57 E-value=8e+02 Score=24.67 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CchhHHhhcchhHhccHHHHHHHHHHhHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK---DGEVYKLIGPILVKQEMEEAKQNVKKRIDY 81 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~---d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~ 81 (110)
+...+......-......++++...+..++.++.|....++|++.-. +.+.+|+-+.+. +-..++...+..+-+.
T Consensus 1496 l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~--~~r~e~er~l~ek~Ee 1573 (1930)
T KOG0161|consen 1496 LSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQ--QLRSEIERRLQEKDEE 1573 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH--HHHHHHHHHHHhhhHH
Confidence 34445555555666677777777888888899999999999988842 667777443322 2233333444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14230 82 ISAELKRHDDTIATLD 97 (110)
Q Consensus 82 i~~~i~~l~~~~~~~~ 97 (110)
++..-..+...+..++
T Consensus 1574 ~E~~rk~~~~~i~~~q 1589 (1930)
T KOG0161|consen 1574 IEELRKNLQRQLESLQ 1589 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 351
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=22.55 E-value=2.8e+02 Score=19.41 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.=+...+++|.+.|...+...++...+.+....+++..+.
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~ 80 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLA 80 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677788888888888777777777776666665553
No 352
>PRK14148 heat shock protein GrpE; Provisional
Probab=22.54 E-value=2.9e+02 Score=20.30 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=20.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
...++.+++.++.+++.+...+..+...+..+++.
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR 76 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKR 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666555543
No 353
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.51 E-value=1.9e+02 Score=24.36 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=4.2
Q ss_pred HHHHhHHHHH
Q psy14230 74 NVKKRIDYIS 83 (110)
Q Consensus 74 ~l~~r~e~i~ 83 (110)
.++++++.++
T Consensus 80 ELEKqLaaLr 89 (475)
T PRK13729 80 QMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 354
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=22.47 E-value=46 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.2
Q ss_pred hcchhHhccHHHHHHHHHHhHHHH
Q psy14230 59 IGPILVKQEMEEAKQNVKKRIDYI 82 (110)
Q Consensus 59 VG~vLV~~~~~ea~~~l~~r~e~i 82 (110)
=|+.|+..|..+.+..++++++.|
T Consensus 134 Cg~~L~~~dn~~~i~~l~~~i~~l 157 (158)
T TIGR00373 134 CGAMLDYLDNSEAIEKLEEQIKFL 157 (158)
T ss_pred CCCEeeeccCHHHHHHHHHHHHhh
Confidence 588888888899888888888776
No 355
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.46 E-value=2.2e+02 Score=21.60 Aligned_cols=31 Identities=3% Similarity=0.124 Sum_probs=18.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.+..+++.+..++.+|..++++..-+++.++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4455666666666666666666666655544
No 356
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=22.30 E-value=2e+02 Score=18.72 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=28.0
Q ss_pred CchhHHhhcchhHhccHHHHHHHHHHhHHHHHH-HHHHHHH
Q psy14230 52 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISA-ELKRHDD 91 (110)
Q Consensus 52 d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~-~i~~l~~ 91 (110)
|.-+++++|.| -..+..+..-.|.+|+..+.. +-+....
T Consensus 8 n~EL~kmaG~v-~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~ 47 (93)
T PF06518_consen 8 NEELIKMAGKV-DPKDVPDYKMEIHKRLKKMKEKEAKDFKK 47 (93)
T ss_dssp HHHHHHTTTTS--GGGHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred hHHHHHHHCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55789989988 888899999999998887766 3333333
No 357
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=22.21 E-value=2.4e+02 Score=18.58 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESV 43 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v 43 (110)
.++.-..|..||..+..+...+..|.+-..||..=
T Consensus 55 ~ee~R~~~E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 55 QEEKRVYYEGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888888888888888888887643
No 358
>PRK14151 heat shock protein GrpE; Provisional
Probab=22.06 E-value=2e+02 Score=20.70 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
++...++.+++.++.+++.+...+-.+...++.+++.
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR 56 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRR 56 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777777766654
No 359
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=22.05 E-value=1.7e+02 Score=18.82 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q psy14230 77 KRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~ 96 (110)
..++..+..++.++.+.+.+
T Consensus 15 ~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 15 KKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 360
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=22.02 E-value=3.5e+02 Score=20.28 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHh
Q psy14230 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVK 65 (110)
Q Consensus 1 m~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~ 65 (110)
|+.+.+|-+.+.|..=..+...++.+...-..+-+-+.-.-..-. +...=|-||.+|..
T Consensus 14 ~~~~~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~------~s~~sk~lG~~L~~ 72 (223)
T cd07605 14 IKEQFNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELAS------QSRGSQELGEALKQ 72 (223)
T ss_pred HHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCCcchHHHHHHHH
Confidence 455577888889988888888888887776666555543333221 22233567777744
No 361
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=21.92 E-value=4.2e+02 Score=21.18 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=6.4
Q ss_pred hcchhHhc
Q psy14230 59 IGPILVKQ 66 (110)
Q Consensus 59 VG~vLV~~ 66 (110)
.|+.||++
T Consensus 89 ~G~~LVek 96 (324)
T PF12126_consen 89 TGGALVEK 96 (324)
T ss_pred hHHHHHHH
Confidence 68888877
No 362
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=21.89 E-value=2.6e+02 Score=18.79 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy14230 9 LENELNLFKQCQKEY 23 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l 23 (110)
++..+.+|+.++..+
T Consensus 35 ~~~~l~~~~~~~~e~ 49 (213)
T cd00176 35 VEALLKKHEALEAEL 49 (213)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 363
>PRK14154 heat shock protein GrpE; Provisional
Probab=21.82 E-value=2.2e+02 Score=21.27 Aligned_cols=32 Identities=3% Similarity=0.056 Sum_probs=17.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
++.+++.++.+++.+...+..+...++.+++.
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR 88 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR 88 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555543
No 364
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=21.67 E-value=2.8e+02 Score=19.11 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.=....++.|-+.|.+.+...++.-.+.+....++...|.
T Consensus 31 kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~ 70 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELA 70 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777777777777777777777766666665553
No 365
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=21.50 E-value=3.5e+02 Score=20.88 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
.+....+.+.|+.++..+......++.-.+||....+.|..-.
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3444555566777777777777777777777777777776655
No 366
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=21.47 E-value=3.2e+02 Score=21.16 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=41.9
Q ss_pred hhHHhhcchhHhc---cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 54 EVYKLIGPILVKQ---EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 54 ~~yKlVG~vLV~~---~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
-+|+.+-.+|=.. .+..|...|..--+..+..+..|..++..+..++...++.+.
T Consensus 48 ~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 48 DIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455444444333 357888889988899999999999999999999988877653
No 367
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=21.32 E-value=42 Score=22.30 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc---CC-Cc-----hhHHhhcchhHhc
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKE---LDL---MK-DG-----EVYKLIGPILVKQ 66 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~ee---L~~---l~-d~-----~~yKlVG~vLV~~ 66 (110)
.......+.+...+..+.+++..+..++.+.+.-..+ ... -. |+ ++||.+| +-+..
T Consensus 9 ~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~~~~~~~~~~~~~d~~vlklkLYrsLG-I~~e~ 76 (118)
T PF08286_consen 9 FRLAKELSDLESELESLQSELEELKEELEELEEQEVEGEEVDEDTTEEIDSNVLKLKLYRSLG-IELEY 76 (118)
T ss_dssp ----------------------------------HT------CCCCCHHCCCHHHHHHHHHCC-EEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCcccchHHHHHHHHHhCc-EEEEe
Confidence 3344444555555555555555555555555544444 111 11 32 7899999 55544
No 368
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.32 E-value=2.5e+02 Score=18.37 Aligned_cols=34 Identities=9% Similarity=-0.065 Sum_probs=18.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
...+..+++.++.+++.++..-..+..++..++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444555555555555555555555555555543
No 369
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.26 E-value=3.3e+02 Score=19.80 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHH
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHD 90 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~ 90 (110)
.++.+...++..+..++.++.+++
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le 140 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLE 140 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555554
No 370
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.15 E-value=2.6e+02 Score=19.66 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=36.2
Q ss_pred ccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14230 48 DLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 95 (110)
Q Consensus 48 ~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~ 95 (110)
..-+ |..+++-.|..|-..|.++-...++--++.++.+++...+....
T Consensus 101 ~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a~~~~~~ 149 (170)
T PF09548_consen 101 ALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEAREEAKK 149 (170)
T ss_pred CCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344 77889999999999999988888887777777766666555443
No 371
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=21.14 E-value=1.8e+02 Score=18.41 Aligned_cols=26 Identities=12% Similarity=0.397 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTK 99 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~ 99 (110)
.+..++..|..+...++.++.++..+
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~ 29 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAE 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555555444
No 372
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=20.53 E-value=4.9e+02 Score=21.43 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy14230 20 QKEYQKVLNQRQLLSAQLNENESVQKELDLMK 51 (110)
Q Consensus 20 q~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~ 51 (110)
..+++++..++..+..++.+.+..+..++..+
T Consensus 276 ~~~m~k~~~ki~~~~~~~~~~~~~~~~~~~~~ 307 (391)
T smart00435 276 EKSMEKLQEKIKALKYQLKRLKKMILLFEMIS 307 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 35566777777777777777777776666543
No 373
>PRK08724 fliD flagellar capping protein; Validated
Probab=20.48 E-value=1.6e+02 Score=25.88 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKV 26 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l 26 (110)
.+...++..|..|+.+...+..+
T Consensus 490 aik~aIk~FVdaYN~Li~~i~~l 512 (673)
T PRK08724 490 SVRNDIEQFVAAYNQFYQTSKAL 512 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567888888888888766554
No 374
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.48 E-value=2.3e+02 Score=21.30 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=32.1
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
....+.....++.+++.+..+++.+...+..+..+++.+++..
T Consensus 35 ~~~~~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~ 77 (214)
T PRK14163 35 PAGDAAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRV 77 (214)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444567788888888888888888888888888877654
No 375
>PRK12765 flagellar capping protein; Provisional
Probab=20.36 E-value=1.3e+02 Score=25.81 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
|..|.+.|...++++++++..++.+|..+...+
T Consensus 530 l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~ 562 (595)
T PRK12765 530 LTKYDESLTNEIKSLTTSKESTQELIDTKYETM 562 (595)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777777777777765544
No 376
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.35 E-value=2.7e+02 Score=18.41 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+..++...+..+++.|+.++..+......+...+..+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (126)
T cd04785 76 SCAEADAIARAHLADVRARIADLRRLEAELKRMVAAC 112 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456677778888888888888777777766655443
No 377
>KOG0639|consensus
Probab=20.18 E-value=2.7e+02 Score=24.16 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENE 41 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~ 41 (110)
+...+..+-.+|+-|+.+++.+......|-.++.|..
T Consensus 21 ~~etldRIKdEfqflqaqyhslkleceKlA~EKteMq 57 (705)
T KOG0639|consen 21 ILETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQ 57 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4566777778888888888887766666666655543
No 378
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=20.06 E-value=2.8e+02 Score=18.40 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+..++...+..+++.|..++..+......+...+..+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~~~ 112 (127)
T cd01108 76 ASADVKALALEHIAELERKIAELQAMRRTLQQLADSC 112 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456667788888888888887777777766655543
No 379
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=20.04 E-value=3.5e+02 Score=21.10 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=28.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
.+..+.+.+..+++.+..+...+++++..+++.|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIE 37 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888889999888888888888887763
Done!