Query psy14230
Match_columns 110
No_of_seqs 100 out of 445
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:45:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zqm_A Prefoldin beta subunit 99.9 9.4E-27 3.2E-31 155.9 10.0 107 1-108 1-108 (117)
2 1fxk_A Prefoldin; archaeal pro 99.9 1.3E-26 4.4E-31 153.2 9.3 102 7-108 1-103 (107)
3 2zdi_C Prefoldin subunit alpha 99.4 3.5E-13 1.2E-17 93.9 7.3 107 2-108 4-136 (151)
4 1fxk_C Protein (prefoldin); ar 99.1 4.5E-10 1.5E-14 76.3 9.5 101 8-108 2-126 (133)
5 3aei_A Prefoldin beta subunit 98.1 3.6E-05 1.2E-09 48.5 9.3 89 18-106 8-97 (99)
6 1l8d_A DNA double-strand break 96.9 0.031 1.1E-06 36.0 11.6 97 9-107 5-101 (112)
7 1fxk_A Prefoldin; archaeal pro 95.7 0.12 4.2E-06 32.7 8.9 100 3-103 4-105 (107)
8 2zqm_A Prefoldin beta subunit 95.4 0.14 4.8E-06 32.9 8.4 100 4-104 10-111 (117)
9 3na7_A HP0958; flagellar bioge 94.2 1 3.5E-05 32.9 11.5 47 3-49 28-74 (256)
10 2pnv_A Small conductance calci 92.0 0.53 1.8E-05 25.9 5.2 35 69-103 8-42 (43)
11 1go4_E MAD1 (mitotic arrest de 85.6 4.8 0.00016 25.9 7.1 78 14-96 12-94 (100)
12 2yny_A General control protein 84.3 3.1 0.00011 27.0 5.8 52 53-106 54-105 (106)
13 3efg_A Protein SLYX homolog; x 83.8 2.9 9.9E-05 25.5 5.3 44 65-108 9-52 (78)
14 3nmd_A CGMP dependent protein 80.9 6.6 0.00023 23.7 6.0 34 74-107 37-70 (72)
15 1t2k_D Cyclic-AMP-dependent tr 80.9 5.9 0.0002 22.6 5.8 41 68-108 20-60 (61)
16 3ghg_A Fibrinogen alpha chain; 80.7 6.9 0.00024 32.1 7.7 29 5-33 55-83 (562)
17 1m1j_C Fibrinogen gamma chain; 79.0 22 0.00074 28.0 10.4 42 9-50 25-67 (409)
18 2dfs_A Myosin-5A; myosin-V, in 77.6 20 0.00069 31.5 10.2 33 70-102 1016-1048(1080)
19 3mq9_A Bone marrow stromal ant 76.7 24 0.0008 27.2 12.9 30 75-104 441-470 (471)
20 1fxk_C Protein (prefoldin); ar 76.5 13 0.00044 24.1 10.9 38 68-105 93-130 (133)
21 1c1g_A Tropomyosin; contractIl 75.5 16 0.00056 24.8 12.3 25 7-31 6-30 (284)
22 1aq5_A Matrilin-1, CMP, cartil 75.4 7 0.00024 21.7 4.5 30 64-93 17-46 (47)
23 1jnm_A Proto-oncogene C-JUN; B 74.5 9.8 0.00034 21.8 5.8 41 68-108 20-60 (62)
24 1c1g_A Tropomyosin; contractIl 72.3 20 0.00068 24.3 12.4 38 5-42 11-48 (284)
25 2l5g_B Putative uncharacterize 72.2 6.1 0.00021 21.5 3.6 30 76-105 8-37 (42)
26 3uul_A Utrophin; spectrin repe 69.1 17 0.00057 22.2 8.4 72 30-102 35-110 (118)
27 2l5g_B Putative uncharacterize 68.4 5.9 0.0002 21.5 3.0 26 82-107 7-32 (42)
28 2e7s_A RAB guanine nucleotide 68.1 9.1 0.00031 25.8 4.7 37 71-107 97-133 (135)
29 2wt7_A Proto-oncogene protein 67.8 15 0.00051 21.1 5.7 41 68-108 21-61 (63)
30 3oja_B Anopheles plasmodium-re 65.6 48 0.0016 26.1 10.5 26 19-44 461-486 (597)
31 2yko_A LINE-1 ORF1P; RNA-bindi 65.3 16 0.00054 26.8 5.8 42 67-108 10-51 (233)
32 2yny_A General control protein 65.3 12 0.00041 24.2 4.6 45 52-98 60-104 (106)
33 3mtu_E Head morphogenesis prot 64.7 21 0.00073 21.7 5.6 51 53-103 13-63 (77)
34 3uun_A Dystrophin; triple heli 64.5 21 0.00072 21.6 8.8 72 30-102 35-110 (119)
35 3gpv_A Transcriptional regulat 64.2 21 0.00073 23.6 6.0 42 66-107 91-132 (148)
36 3gp4_A Transcriptional regulat 61.0 24 0.00082 23.3 5.7 40 67-106 78-117 (142)
37 1s35_A Beta-I spectrin, spectr 60.6 35 0.0012 22.9 7.0 43 59-101 62-104 (214)
38 3ol1_A Vimentin; structural ge 60.4 31 0.0011 22.2 9.9 89 16-107 22-117 (119)
39 2yy0_A C-MYC-binding protein; 60.1 15 0.00052 20.6 3.9 28 74-101 23-50 (53)
40 3qne_A Seryl-tRNA synthetase, 59.8 66 0.0023 25.8 11.0 30 74-103 75-104 (485)
41 2dq0_A Seryl-tRNA synthetase; 57.1 69 0.0024 25.2 11.4 30 74-103 73-102 (455)
42 3hnw_A Uncharacterized protein 56.5 41 0.0014 22.4 10.6 36 69-104 102-137 (138)
43 2wuj_A Septum site-determining 56.3 17 0.00059 20.5 3.8 30 68-97 25-54 (57)
44 1ci6_A Transcription factor AT 55.9 27 0.00091 20.0 5.7 41 68-108 21-61 (63)
45 1k1f_A Breakpoint cluster regi 55.3 15 0.00052 21.9 3.5 26 78-103 27-52 (72)
46 1gu4_A CAAT/enhancer binding p 54.4 33 0.0011 20.7 5.1 37 72-108 38-74 (78)
47 1hjb_A Ccaat/enhancer binding 53.5 29 0.001 21.4 4.8 36 73-108 39-74 (87)
48 3viq_B Mating-type switching p 53.4 19 0.00065 22.3 3.9 26 74-99 5-30 (85)
49 1q08_A Zn(II)-responsive regul 51.5 37 0.0013 20.3 5.8 39 67-105 36-74 (99)
50 2dq3_A Seryl-tRNA synthetase; 51.1 73 0.0025 24.7 7.9 28 76-103 74-101 (425)
51 3lbx_A Spectrin alpha chain, e 50.8 51 0.0017 21.8 7.7 42 59-101 117-158 (161)
52 2zdi_C Prefoldin subunit alpha 50.7 36 0.0012 22.5 5.3 40 67-106 102-141 (151)
53 3lss_A Seryl-tRNA synthetase; 50.1 97 0.0033 24.8 10.1 28 76-103 109-137 (484)
54 3kin_B Kinesin heavy chain; mo 49.7 37 0.0013 21.8 5.1 31 75-105 87-117 (117)
55 1gmj_A ATPase inhibitor; coile 49.3 44 0.0015 20.6 5.6 27 78-104 52-78 (84)
56 1wlx_A Alpha-actinin 4; three- 49.1 55 0.0019 21.6 8.8 81 7-87 45-126 (129)
57 1wt6_A Myotonin-protein kinase 48.9 44 0.0015 20.5 7.4 43 4-46 14-56 (81)
58 3swy_A Cyclic nucleotide-gated 47.4 34 0.0012 18.7 5.6 36 67-102 2-37 (46)
59 3ol1_A Vimentin; structural ge 47.3 54 0.0018 21.0 9.8 23 62-84 82-104 (119)
60 1l8d_A DNA double-strand break 45.9 51 0.0017 20.4 9.9 95 3-101 6-102 (112)
61 3twe_A Alpha4H; unknown functi 45.9 21 0.00071 17.1 2.5 20 89-108 6-25 (27)
62 3vkg_A Dynein heavy chain, cyt 45.8 1.4E+02 0.0048 29.7 10.0 41 66-106 2010-2050(3245)
63 1wle_A Seryl-tRNA synthetase; 45.1 1.2E+02 0.004 24.3 10.2 32 72-103 118-149 (501)
64 2yy0_A C-MYC-binding protein; 44.6 40 0.0014 18.8 4.9 32 77-108 19-50 (53)
65 1rtm_1 Mannose-binding protein 44.6 30 0.001 22.1 4.1 55 19-76 2-57 (149)
66 2xs1_A Programmed cell death 6 43.9 1E+02 0.0035 25.5 8.0 103 5-108 419-527 (704)
67 3swk_A Vimentin; cytoskeleton, 43.2 54 0.0019 19.9 10.6 33 17-49 3-35 (86)
68 4ioe_A Secreted protein ESXB; 42.6 38 0.0013 19.8 4.1 77 6-97 11-90 (93)
69 1m1j_C Fibrinogen gamma chain; 42.5 52 0.0018 25.8 5.8 28 77-104 105-132 (409)
70 3hh0_A Transcriptional regulat 42.1 71 0.0024 21.0 5.9 39 67-105 77-115 (146)
71 2v4h_A NF-kappa-B essential mo 41.7 69 0.0024 20.7 10.0 47 11-57 28-75 (110)
72 3ghg_A Fibrinogen alpha chain; 41.4 1.5E+02 0.005 24.4 9.7 25 74-98 114-138 (562)
73 3gnl_A Uncharacterized protein 41.3 61 0.0021 23.4 5.6 50 58-107 176-235 (244)
74 3viq_B Mating-type switching p 41.1 33 0.0011 21.2 3.6 29 79-107 3-31 (85)
75 1lrz_A FEMA, factor essential 41.1 28 0.00097 26.7 4.0 28 63-90 240-267 (426)
76 2ap3_A Conserved hypothetical 40.4 50 0.0017 23.5 4.9 31 67-97 67-97 (199)
77 3lec_A NADB-rossmann superfami 40.2 38 0.0013 24.2 4.3 50 58-107 174-227 (230)
78 3oa7_A Head morphogenesis prot 39.7 75 0.0026 22.7 5.7 55 53-107 13-67 (206)
79 3o0z_A RHO-associated protein 39.5 93 0.0032 21.5 12.0 103 5-107 18-127 (168)
80 3zbh_A ESXA; unknown function, 39.1 57 0.002 19.0 6.0 86 1-101 3-94 (99)
81 3rrk_A V-type ATPase 116 kDa s 39.0 67 0.0023 23.8 5.7 33 67-99 223-255 (357)
82 3swf_A CGMP-gated cation chann 38.9 63 0.0022 19.4 5.8 36 67-102 4-39 (74)
83 2z5i_A TM, general control pro 38.9 50 0.0017 18.3 4.5 26 77-102 5-30 (52)
84 3a7p_A Autophagy protein 16; c 38.2 66 0.0023 22.0 5.0 41 57-102 53-93 (152)
85 2aze_B Transcription factor E2 38.1 37 0.0013 21.6 3.6 33 72-104 8-40 (106)
86 2fxo_A Myosin heavy chain, car 38.0 80 0.0027 20.4 13.3 44 64-107 77-120 (129)
87 1t3j_A Mitofusin 1; coiled coi 37.9 73 0.0025 20.1 4.9 26 66-91 43-68 (96)
88 2ocy_A RAB guanine nucleotide 36.8 99 0.0034 21.1 12.1 87 16-108 60-146 (154)
89 3na7_A HP0958; flagellar bioge 36.3 1.2E+02 0.0039 21.7 13.2 30 74-103 94-123 (256)
90 3q0x_A Centriole protein; cent 35.9 68 0.0023 23.2 5.1 40 66-105 160-199 (228)
91 2ykt_A Brain-specific angiogen 35.8 1.2E+02 0.0042 21.9 11.5 57 3-65 25-81 (253)
92 1r8d_A Transcription activator 35.5 46 0.0016 20.5 3.7 30 71-100 76-105 (109)
93 2w6a_A ARF GTPase-activating p 34.5 69 0.0024 18.6 5.6 46 60-105 8-55 (63)
94 3t97_C Nuclear pore glycoprote 34.3 70 0.0024 18.6 5.6 43 7-49 12-54 (64)
95 3nmd_A CGMP dependent protein 34.2 76 0.0026 19.0 7.7 41 7-47 26-66 (72)
96 1nkp_B MAX protein, MYC proto- 33.7 75 0.0026 18.7 5.7 43 65-107 35-77 (83)
97 2wuj_A Septum site-determining 33.0 66 0.0023 17.9 4.8 39 65-107 19-57 (57)
98 1ses_A Seryl-tRNA synthetase; 32.8 1.7E+02 0.0059 22.6 9.2 32 72-103 66-97 (421)
99 3kr9_A SAM-dependent methyltra 32.1 61 0.0021 23.0 4.3 50 58-107 168-221 (225)
100 2xdj_A Uncharacterized protein 32.1 87 0.003 19.0 5.2 34 72-105 22-55 (83)
101 1ik9_A DNA repair protein XRCC 32.0 1.4E+02 0.0046 21.2 7.2 67 18-100 143-209 (213)
102 2ocy_A RAB guanine nucleotide 32.0 1.2E+02 0.0041 20.6 9.3 47 4-50 3-49 (154)
103 1u4q_A Spectrin alpha chain, b 31.5 1.1E+02 0.0039 21.6 5.8 26 82-107 292-317 (322)
104 2ovc_A Potassium voltage-gated 31.2 57 0.0019 16.6 3.7 23 81-103 7-29 (33)
105 2efr_A General control protein 31.0 1.2E+02 0.0041 20.6 5.5 37 69-105 83-119 (155)
106 1ezj_A Nucleocapsid phosphopro 31.0 1.1E+02 0.0036 19.7 6.0 54 42-95 36-91 (115)
107 2wg5_A General control protein 30.6 47 0.0016 21.0 3.2 28 78-105 8-35 (109)
108 3efg_A Protein SLYX homolog; x 29.7 93 0.0032 18.6 5.5 21 28-48 14-34 (78)
109 1xaw_A Occludin; coiled-coil, 29.5 1.3E+02 0.0044 20.2 10.8 80 7-98 52-137 (140)
110 1gmj_A ATPase inhibitor; coile 28.9 1E+02 0.0036 18.9 5.0 26 82-107 49-74 (84)
111 3kqg_A Langerin, C-type lectin 28.7 68 0.0023 21.0 3.9 62 12-76 14-78 (182)
112 2wt7_A Proto-oncogene protein 28.7 84 0.0029 17.7 5.7 24 18-41 34-57 (63)
113 1zxa_A CGMP-dependent protein 28.4 94 0.0032 18.2 5.6 39 70-108 18-56 (67)
114 3qao_A LMO0526 protein, MERR-l 28.3 81 0.0028 22.6 4.5 38 70-107 76-113 (249)
115 1buu_A Protein (mannose-bindin 28.3 77 0.0026 20.7 4.1 51 23-76 25-76 (168)
116 1lwu_C Fibrinogen gamma chain; 28.3 1.4E+02 0.0047 22.6 5.9 31 75-105 24-54 (323)
117 1cxz_B Protein (PKN); protein- 28.2 65 0.0022 19.9 3.4 30 75-104 54-83 (86)
118 1zme_C Proline utilization tra 28.1 78 0.0027 17.5 3.6 20 72-91 46-65 (70)
119 2wt7_B Transcription factor MA 28.0 1.1E+02 0.0038 18.9 5.3 38 70-107 48-85 (90)
120 2pjw_H Uncharacterized protein 27.9 1.1E+02 0.0037 18.8 6.0 36 4-39 46-81 (88)
121 1dh3_A Transcription factor CR 27.7 75 0.0026 17.6 3.4 26 72-97 24-49 (55)
122 2vz4_A Tipal, HTH-type transcr 27.4 64 0.0022 19.8 3.4 31 70-100 74-104 (108)
123 4dci_A Uncharacterized protein 26.9 1.3E+02 0.0045 20.3 5.0 38 64-101 23-60 (150)
124 2dgc_A Protein (GCN4); basic d 26.7 94 0.0032 17.7 4.3 29 78-106 31-59 (63)
125 1aa0_A Fibritin, gpwac E; bact 26.3 1.3E+02 0.0045 19.3 6.0 45 60-104 40-84 (113)
126 1g6u_A Domain swapped dimer; d 25.4 85 0.0029 16.8 4.4 26 79-104 22-47 (48)
127 1q06_A Transcriptional regulat 25.3 1.4E+02 0.0047 19.1 5.8 37 67-103 76-112 (135)
128 3c3f_A Alpha/beta peptide with 25.3 77 0.0026 16.2 3.8 28 16-43 3-30 (34)
129 4etp_A Kinesin-like protein KA 25.2 1E+02 0.0035 23.8 4.8 28 77-104 10-37 (403)
130 3iyn_Q Protein IX, PIX, hexon- 25.2 1.2E+02 0.0042 20.1 4.4 35 69-103 97-131 (140)
131 1r8e_A Multidrug-efflux transp 25.2 1.6E+02 0.0054 20.5 5.6 37 68-104 77-113 (278)
132 4abm_A Charged multivesicular 25.1 1.2E+02 0.004 18.2 5.7 30 67-96 3-32 (79)
133 1lwu_C Fibrinogen gamma chain; 25.0 1.4E+02 0.0048 22.6 5.4 26 73-98 29-54 (323)
134 3sja_C Golgi to ER traffic pro 25.0 91 0.0031 18.2 3.4 28 10-37 28-55 (65)
135 3gpv_A Transcriptional regulat 24.8 1.5E+02 0.0051 19.3 5.8 31 77-107 95-125 (148)
136 1ic2_A Tropomyosin alpha chain 24.6 1.1E+02 0.0039 18.0 11.5 71 15-106 7-77 (81)
137 2aze_B Transcription factor E2 24.4 1.4E+02 0.0047 18.8 4.6 34 75-108 4-37 (106)
138 1go4_E MAD1 (mitotic arrest de 24.3 1.4E+02 0.0048 18.8 5.6 34 69-102 11-44 (100)
139 3trt_A Vimentin; cytoskeleton, 24.3 1.1E+02 0.0037 17.6 5.8 21 83-103 55-75 (77)
140 2ayu_A Nucleosome assembly pro 24.2 94 0.0032 24.4 4.4 29 2-30 85-113 (417)
141 4afl_A P29ING4, inhibitor of g 24.1 1.3E+02 0.0044 18.4 10.4 88 2-98 13-101 (104)
142 2w6b_A RHO guanine nucleotide 23.7 1.1E+02 0.0037 17.4 5.3 42 62-103 2-43 (56)
143 1deq_A Fibrinogen (alpha chain 23.5 2.7E+02 0.0091 21.8 11.5 17 87-103 137-153 (390)
144 3fs3_A Nucleosome assembly pro 23.1 90 0.0031 24.1 4.0 29 2-30 44-72 (359)
145 4e61_A Protein BIM1; EB1-like 23.0 1.5E+02 0.0053 18.9 5.6 31 18-48 8-38 (106)
146 3k29_A Putative uncharacterize 23.0 1.9E+02 0.0064 20.0 5.3 52 54-106 3-56 (169)
147 1cun_A Protein (alpha spectrin 22.9 1.7E+02 0.0057 19.3 6.0 21 84-104 185-205 (213)
148 3dlq_I Interleukin-22; cytokin 22.9 59 0.002 22.0 2.7 56 6-62 84-139 (151)
149 3m9b_A Proteasome-associated A 22.8 1.2E+02 0.0042 22.3 4.5 35 70-104 61-95 (251)
150 3pp5_A BRK1, protein brick1; t 22.3 1.3E+02 0.0046 17.9 3.9 13 75-87 50-62 (73)
151 3mq7_A Bone marrow stromal ant 21.9 1.7E+02 0.006 19.1 10.5 31 76-106 70-100 (121)
152 3s4r_A Vimentin; alpha-helix, 21.7 1.5E+02 0.005 18.2 10.2 38 70-107 56-93 (93)
153 2oqq_A Transcription factor HY 21.7 1.1E+02 0.0036 16.4 5.0 35 73-107 6-40 (42)
154 1gd2_E Transcription factor PA 21.3 1.3E+02 0.0046 17.6 4.4 15 86-100 52-66 (70)
155 2bni_A General control protein 21.3 96 0.0033 15.8 3.4 28 16-43 3-30 (34)
156 1pwb_A SP-D, PSP-D, pulmonary 21.1 1.3E+02 0.0043 19.6 4.1 54 20-76 30-84 (177)
157 4ghu_A TNF receptor-associated 21.0 1.7E+02 0.0057 20.0 4.8 31 74-104 4-34 (198)
158 2zvf_A Alanyl-tRNA synthetase; 20.9 1.6E+02 0.0054 19.3 4.5 29 67-95 29-57 (171)
159 3a7o_A Autophagy protein 16; c 20.7 1.2E+02 0.0041 18.1 3.4 7 59-65 5-11 (75)
160 2yo3_A General control protein 20.5 2.4E+02 0.0081 20.9 5.7 35 69-103 208-242 (268)
161 2oeq_A Protein of unknown func 20.3 65 0.0022 20.4 2.4 21 7-27 39-59 (122)
162 2y3w_A SAS6, spindle assembly 20.1 1.2E+02 0.0042 20.8 3.9 38 63-100 144-181 (182)
No 1
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.94 E-value=9.4e-27 Score=155.86 Aligned_cols=107 Identities=21% Similarity=0.365 Sum_probs=104.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhH
Q psy14230 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRI 79 (110)
Q Consensus 1 m~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~ 79 (110)
|. ++||++|+.+++|++++++++.+.+++..++.++++|+.|++||+.++ |++||++||||||++|+++|.+.|++|+
T Consensus 1 m~-~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~ 79 (117)
T 2zqm_A 1 MQ-NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKI 79 (117)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHH
T ss_pred CC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHH
Confidence 54 899999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 80 DYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 80 e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
++|+..++++++++..+++++.+++..|.
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 2
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.94 E-value=1.3e-26 Score=153.21 Aligned_cols=102 Identities=23% Similarity=0.331 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAE 85 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~ 85 (110)
|++|+.+++|++++++++.+.++++.++.++++|+.|++||+.++ |++||++||||||++|+++|.+.|++|+++|+..
T Consensus 1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~ 80 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR 80 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhc
Q psy14230 86 LKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 86 i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
++++++++..+++++.+++..|.
T Consensus 81 i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.42 E-value=3.5e-13 Score=93.87 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCC--CchhHHhhc----------------
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLL---SAQLNENESVQKELDLMK--DGEVYKLIG---------------- 60 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~l---e~q~~E~~~v~eeL~~l~--d~~~yKlVG---------------- 60 (110)
|+++||++++....+++++.+++.+.+++..+ .+.+.|+..++++|+.++ +..+|..+|
T Consensus 4 m~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~ 83 (151)
T 2zdi_C 4 MAQNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAI 83 (151)
T ss_dssp CCSSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEE
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEE
Confidence 45789999999999999999999999999999 999999999999999996 457888866
Q ss_pred -----chhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 61 -----PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 61 -----~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
|++|+.|.++|...+++|+++++..++.+++.+..+..++......|.
T Consensus 84 v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 84 VSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp EEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999988876653
No 4
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.12 E-value=4.5e-10 Score=76.30 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---C--------------------chhHHhhc-chh
Q psy14230 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK---D--------------------GEVYKLIG-PIL 63 (110)
Q Consensus 8 ~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~---d--------------------~~~yKlVG-~vL 63 (110)
++++....+++++.+++.+..++..+...+.++..+++.|+.++ + .+||-.|| |++
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~ 81 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Confidence 46888999999999999999999999999999999999998865 1 23788899 799
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
|+.|.++|...+++|+++++..++.+++.+..+..++......|.
T Consensus 82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877653
No 5
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=98.12 E-value=3.6e-05 Score=48.53 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
.|+-+++.+..-++.++-...|.+-+--=+..+. ++++||...+.||+.++|+|.+.++...=....+++++.+..+++
T Consensus 8 el~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekei 87 (99)
T 3aei_A 8 ELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEI 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888888888888899 999999999999999999999999987777889999999999999
Q ss_pred HHHHHhhcch
Q psy14230 97 DTKQDTHLPI 106 (110)
Q Consensus 97 ~~~l~e~k~~ 106 (110)
-+++..+..-
T Consensus 88 me~ls~l~~p 97 (99)
T 3aei_A 88 MEELSKLRAP 97 (99)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhhccC
Confidence 9988876543
No 6
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=96.94 E-value=0.031 Score=36.03 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 9 ~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
+...-..+..+...+..+.+.+..+.+++.+...++.+++...+ +|-= -|..+=+....+........+..+..++..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~-~CPv-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~ 82 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKG-KCPV-CGRELTDEHREELLSKYHLDLNNSKNTLAK 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE-ECTT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCC-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444467778888888999999999999999999999977332 2221 244333333345666677777777777777
Q ss_pred HHHHHHHHHHHHHhhcchh
Q psy14230 89 HDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 89 l~~~~~~~~~~l~e~k~~l 107 (110)
+..++..+..++..+...+
T Consensus 83 l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 83 LIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777766665443
No 7
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=95.72 E-value=0.12 Score=32.70 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C-CchhHHhhcchhHhccHHHHHHHHHHhHH
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM-K-DGEVYKLIGPILVKQEMEEAKQNVKKRID 80 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l-~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e 80 (110)
+..-..++..-.+++.+..+++.+..++...+.=+.|.+.+-++=.-- . +.+ |=..---=+...+++..+.++.+++
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~v-fv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNI-LIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTE-EEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHH-HHhccHHHHHHHHHHHHHHHHHHHH
Confidence 445567888899999999999999999999999999999887642211 2 332 2223344455678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 81 YISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+++.++.+.+.+.++...+.+.
T Consensus 83 ~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988753
No 8
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=95.40 E-value=0.14 Score=32.85 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C-CchhHHhhcchhHhccHHHHHHHHHHhHHH
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM-K-DGEVYKLIGPILVKQEMEEAKQNVKKRIDY 81 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l-~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~ 81 (110)
.+-..++..-.+++.+..+++.+..++..++.=+.|.+.+-++=.-. . +. ||=..---=+...+++..+.++..++.
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~-vfv~~~~~ea~~~L~~~~e~ie~~i~~ 88 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGT-LIVKTTKDKAVAELKEKIETLEVRLNA 88 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETT-EEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhH-HHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556888889999999999999999999999999998887542222 2 33 332244444556788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 82 ISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 82 i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
+++.++.+.+.+.++..++.+.-
T Consensus 89 le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 89 LERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888754
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.25 E-value=1 Score=32.90 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
+.+|..+...-..+..++..+..+...+..++.++..++.-++++..
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888888877777777777777666655544
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=92.00 E-value=0.53 Score=25.88 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
-|....+..|.+.++++|.+++.++..+...+..+
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46678888999999999999999998888877643
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=85.65 E-value=4.8 Score=25.85 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC-Cc---hhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHH
Q psy14230 14 NLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL-MK-DG---EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 88 (110)
Q Consensus 14 ~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~-l~-d~---~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~ 88 (110)
.+|..++.++..|...+..|..++..++.=++=... .+ |. +|.+ |..-+...|.......++.+..++++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH-----~~~NPa~~a~~~~~~~~e~Lq~E~er 86 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLH-----MSLNPTSVARQRLREDHSQLQAECER 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEE-----ESSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeee-----ecCChHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888888888888877765432 24 44 4444 22334567777778888888888888
Q ss_pred HHHHHHHH
Q psy14230 89 HDDTIATL 96 (110)
Q Consensus 89 l~~~~~~~ 96 (110)
|...+..+
T Consensus 87 Lr~~v~~l 94 (100)
T 1go4_E 87 LRGLLRAM 94 (100)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 87766544
No 12
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=84.31 E-value=3.1 Score=27.04 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=40.9
Q ss_pred chhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 53 GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 53 ~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
++-|. ||+- .--++++|...|+.++..+...+..+..++..++.++...++.
T Consensus 54 aPtY~-I~g~-~YnnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~~ 105 (106)
T 2yny_A 54 APLYE-VGTG-IYNNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKKL 105 (106)
T ss_dssp CCCEE-ETTE-EESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCeEE-eCCc-eeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566 3321 2347899999999999999999999999999999998877653
No 13
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.80 E-value=2.9 Score=25.52 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=36.4
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
..+.++.+..|+.|+.|.+..|+.|+..+..-+.++..++..+.
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999998888888888877654
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.92 E-value=6.6 Score=23.74 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.-+.+++.+++++...+..|.++..++.+++.++
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3345666666777777777777777777766654
No 15
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.89 E-value=5.9 Score=22.63 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+.+-...++.+.+.++.+-..|...+..+..++..++..|.
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999999999887654
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.74 E-value=6.9 Score=32.07 Aligned_cols=29 Identities=3% Similarity=-0.018 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLL 33 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~l 33 (110)
|-.+-+..-+..+.|+.+|..+...+...
T Consensus 55 LdkqErDltkrINELKnqLEdlsKnsKds 83 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDS 83 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhhchhH
Confidence 33444445555555555555554333333
No 17
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=79.05 E-value=22 Score=28.02 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 9 LENELNLFKQ-CQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 9 ~Q~~i~~~q~-lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
++.-+.+|+. +..+++.|..-+.+++.-.++.......|...
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666665 66666666666666655555555555555443
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.60 E-value=20 Score=31.46 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
+....+...+..++++...|+.++.+++..+.+
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666666666666666665544333
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.73 E-value=24 Score=27.21 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=25.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
-.+|++.++.++..++.++++...++.+++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999988888765
No 20
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=76.54 E-value=13 Score=24.06 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.++-+..++.+++.+++.+..+..++..+...++++..
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777777777777777777777776643
No 21
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=75.48 E-value=16 Score=24.76 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQ 31 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~ 31 (110)
..+...-..+..+..++..+...+.
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~ 30 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKK 30 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 22
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=75.37 E-value=7 Score=21.74 Aligned_cols=30 Identities=10% Similarity=0.390 Sum_probs=23.6
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTI 93 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~ 93 (110)
+...+.+++..|..+++.+.++++.+++++
T Consensus 17 FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 17 FQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445667888888888888888888887765
No 23
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.45 E-value=9.8 Score=21.75 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+.+....++.+++.++.+-..|...+..+..+...++..|.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999887764
No 24
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=72.29 E-value=20 Score=24.31 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENES 42 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~ 42 (110)
+...+......+..+...+..+...+..+...+.+...
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 48 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQK 48 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 25
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=72.18 E-value=6.1 Score=21.47 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 76 KKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
=..++.+..+|...+.+|.++++++.++.+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777766643
No 26
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=69.12 E-value=17 Score=22.15 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCC-Cc-hhHHhhcchhHhcc--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 30 RQLLSAQLNENESVQKELDLMK-DG-EVYKLIGPILVKQE--MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 30 ~~~le~q~~E~~~v~eeL~~l~-d~-~~yKlVG~vLV~~~--~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
...+..++..|+....+|..-. .- .|.. .|.-|+... .++-...|..+++.|..+-+.+.....+-..++.+
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~-~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~ 110 (118)
T 3uul_A 35 VEDVKEQFATHETFMMELSAHQSSVGSVLQ-AGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHD 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666554 22 3333 677777653 24445667778888777777777777666666554
No 27
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=68.39 E-value=5.9 Score=21.53 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 82 ISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 82 i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+=..|++++..|...++++.++++++
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666654
No 28
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.14 E-value=9.1 Score=25.82 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
....++.|.+.+..++..-+.-+..++.++.+++.++
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888888888888888888887765
No 29
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.80 E-value=15 Score=21.09 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+.+-...|..+.+.++.+-..|...+..+..+...|+..|.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999888877653
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.59 E-value=48 Score=26.09 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 19 CQKEYQKVLNQRQLLSAQLNENESVQ 44 (110)
Q Consensus 19 lq~~l~~l~~~~~~le~q~~E~~~v~ 44 (110)
++..++.+.......+..+.....-+
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444443333333
No 31
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=65.30 E-value=16 Score=26.80 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+.++-.+.++.|++.|....+..++.++..+..+.++.+.+.
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357788889999999999999999999999998888877654
No 32
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=65.26 E-value=12 Score=24.24 Aligned_cols=45 Identities=16% Similarity=0.400 Sum_probs=38.4
Q ss_pred CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 52 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 52 d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
...-|.-||.+|- .++..+..+..++..+...+..++.+++.+.+
T Consensus 60 ~g~~YnnVGdAl~--ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 60 GTGIYNNVGSALS--ALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp TTEEESSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999998 57888999999999999999999998887654
No 33
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=64.71 E-value=21 Score=21.75 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=35.3
Q ss_pred chhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 53 GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 53 ~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
...-|+..|-|......++...+...-...++.|+.|+..+.....+-..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i 63 (77)
T 3mtu_E 13 DILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNM 63 (77)
T ss_dssp HHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 356677888888888889998888888888888888887765554444333
No 34
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=64.54 E-value=21 Score=21.61 Aligned_cols=72 Identities=10% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCC-Cc-hhHHhhcchhHhcc--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 30 RQLLSAQLNENESVQKELDLMK-DG-EVYKLIGPILVKQE--MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 30 ~~~le~q~~E~~~v~eeL~~l~-d~-~~yKlVG~vLV~~~--~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
...+..++..|+....+|..-. .- .|.. .|.-|+... -.+..+.|..+++.|...-+.+.....+-..++.+
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~-~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~ 110 (119)
T 3uun_A 35 VEVVKDQFHTHEGYMMDLTAHQGRVGNILQ-LGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHR 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666654 22 3333 677887653 34556778888888888877777777776666654
No 35
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=64.16 E-value=21 Score=23.60 Aligned_cols=42 Identities=5% Similarity=0.027 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.+.+++...+..+++.|..++..+......+...+..++..+
T Consensus 91 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 91 STILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888899999999999988888888888777654
No 36
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=61.03 E-value=24 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
+.+++...+..+++.|..++..+......+...+..+...
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777777777666543
No 37
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=60.64 E-value=35 Score=22.92 Aligned_cols=43 Identities=5% Similarity=0.065 Sum_probs=24.4
Q ss_pred hcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 59 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 59 VG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
.|.-|+........+.|..++..|...-..+......-...+.
T Consensus 62 ~g~~L~~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~ 104 (214)
T 1s35_A 62 SGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLA 104 (214)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555433334566666666666666666655555555544
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=60.42 E-value=31 Score=22.22 Aligned_cols=89 Identities=6% Similarity=0.119 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHH-hhcc--hhHhccHHHH---HHHHHHhHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYK-LIGP--ILVKQEMEEA---KQNVKKRIDYISAELKR 88 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yK-lVG~--vLV~~~~~ea---~~~l~~r~e~i~~~i~~ 88 (110)
...|+.++..+...+..+..++.-...+.+++..== +....| .+.. +-.+.+++++ ...++.+++.+..++.-
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888999999999888888888886422 222111 1222 1223444443 34566677777777766
Q ss_pred HHHHHHHHHHHHHhhcchh
Q psy14230 89 HDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 89 l~~~~~~~~~~l~e~k~~l 107 (110)
+.+-.. +++.+++..|
T Consensus 102 LKk~he---eEl~eLq~qi 117 (119)
T 3ol1_A 102 LKKLHE---EEIQELQAQI 117 (119)
T ss_dssp HHHHHH---HHHHHHHSCC
T ss_pred HHHHHH---HHHHHHHHHh
Confidence 655443 4555555443
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.12 E-value=15 Score=20.60 Aligned_cols=28 Identities=7% Similarity=0.060 Sum_probs=13.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
.|....+.+..++..|..+++++..++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555555555544443
No 40
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=59.75 E-value=66 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+..+...|..+++.++..+.+++.++.++
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888888888777654
No 41
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=57.13 E-value=69 Score=25.21 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+..+...|..+++.++.++.++++++.++
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888888888888877664
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.47 E-value=41 Score=22.35 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
......+.+.++.+..++..++.++..++.++...+
T Consensus 102 ~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~~ 137 (138)
T 3hnw_A 102 QIKAESSAKEIKELKSEINKYQKNIVKLETELNDSK 137 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566667777777777778877777777776543
No 43
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.35 E-value=17 Score=20.48 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~ 97 (110)
+++-+..|...++.+..+...|..++..++
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555544444443
No 44
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=55.88 E-value=27 Score=20.05 Aligned_cols=41 Identities=2% Similarity=0.023 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+.+-.+.+..+.+.++.+-..|..++..++.+..-|+.-|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888888888888899999999888888876553
No 45
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=55.29 E-value=15 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+..|+.+++++...|..++.+++.-
T Consensus 27 ~vgdiEqeLe~Ck~sIrrLE~evn~E 52 (72)
T 1k1f_A 27 SVGDIEQELERAKASIRRLEQEVNQE 52 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678889999999999999888763
No 46
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=54.40 E-value=33 Score=20.74 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
...+..+.++|+.+-..|..++..+..++..++..|.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999887664
No 47
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.49 E-value=29 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
..+..+.++|+.+-..|..++..+..++..++..+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999988877654
No 48
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=53.43 E-value=19 Score=22.34 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTK 99 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~ 99 (110)
.+..++..+..++..+++++.++..+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554443
No 49
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=51.53 E-value=37 Score=20.33 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+..++...+..+++.|..++..+......+...+..+..
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888888888888888888888877766543
No 50
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=51.10 E-value=73 Score=24.74 Aligned_cols=28 Identities=11% Similarity=0.392 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 76 KKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
..+...|..+++.++.++.++++++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777766554
No 51
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=50.83 E-value=51 Score=21.77 Aligned_cols=42 Identities=7% Similarity=-0.097 Sum_probs=23.7
Q ss_pred hcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 59 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 59 VG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
.|.-|+..... +-+.|..|++.|...=+.|..........+.
T Consensus 117 ~g~~Li~~~~~-~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~ 158 (161)
T 3lbx_A 117 TREERFTMGHS-AHEETKAHIEELRHLWDLLLELTLEKGDQLL 158 (161)
T ss_dssp HHHHHSCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655442 3366666666666666666555555554443
No 52
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=50.69 E-value=36 Score=22.49 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
-.+.-+..++.+++.++..+..+..++..+...++++...
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777766544
No 53
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=50.09 E-value=97 Score=24.79 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=21.4
Q ss_pred HHh-HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 76 KKR-IDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 76 ~~r-~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
..+ ...|..+++.++..+.+++.++.++
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 7778888888888888888887754
No 54
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=49.69 E-value=37 Score=21.82 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=24.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+.++.+....+++.+...+..++.++..|+.
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455666777888899999999999998874
No 55
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=49.33 E-value=44 Score=20.63 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.+++-..+|+++++.|....+.+.+++
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666666665554
No 56
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=49.05 E-value=55 Score=21.64 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAE 85 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~ 85 (110)
..++..+..+.++...+.........+-.-..+.+........-. ...+|-.|-+-=+...-+.+...+..|-..|..+
T Consensus 45 eEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~li~~Rd~~Lq~E 124 (129)
T 1wlx_A 45 EEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLEE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888888887777777777777777777776666433 4458887776667777788888888888877766
Q ss_pred HH
Q psy14230 86 LK 87 (110)
Q Consensus 86 i~ 87 (110)
..
T Consensus 125 ~~ 126 (129)
T 1wlx_A 125 QS 126 (129)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.92 E-value=44 Score=20.50 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKE 46 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~ee 46 (110)
+++-.++..|..=+.++.++..+.+....+++++.|.+.-..+
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666666666666666655444333
No 58
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=47.37 E-value=34 Score=18.74 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
|.+|-+..++..++.+.....++=.++...+.++..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKq 37 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQ 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777776654
No 59
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.28 E-value=54 Score=21.04 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=15.9
Q ss_pred hhHhccHHHHHHHHHHhHHHHHH
Q psy14230 62 ILVKQEMEEAKQNVKKRIDYISA 84 (110)
Q Consensus 62 vLV~~~~~ea~~~l~~r~e~i~~ 84 (110)
.|.+.+.+--++.|...+.|+.+
T Consensus 82 ~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 82 SLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888888764
No 60
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.92 E-value=51 Score=20.35 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHhhcchhHhccHHHHHHHHHHhHH
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK--DGEVYKLIGPILVKQEMEEAKQNVKKRID 80 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~--d~~~yKlVG~vLV~~~~~ea~~~l~~r~e 80 (110)
+.+.+.++..-.++..|+.....+.+++..+...+.+++.. =..=| ++.+-.-...-++. ....-...+..++.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~---g~~CPvCgs~l~~~~~~~~i~-~~~~~l~~l~~~i~ 81 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA---KGKCPVCGRELTDEHREELLS-KYHLDLNNSKNTLA 81 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---SEECTTTCCEECHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCCCcCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45667777788888889999999999999999998888664 33344 55443322222232 34445566677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14230 81 YISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~~l~ 101 (110)
.+..++..++..+..+..++.
T Consensus 82 ~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 82 KLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776
No 61
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=45.89 E-value=21 Score=17.06 Aligned_cols=20 Identities=5% Similarity=-0.066 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhcchhc
Q psy14230 89 HDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 89 l~~~~~~~~~~l~e~k~~l~ 108 (110)
+=+.+.++++.+..++++++
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33445556666666666554
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.85 E-value=1.4e+02 Score=29.69 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
.++.+++..++.+++.....+...+..+++++++++.+++.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~ 2050 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEE 2050 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666655556665666666666555555543
No 63
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.15 E-value=1.2e+02 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.067 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+.+..+...|..+++.++....++++++..+
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888764
No 64
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.63 E-value=40 Score=18.79 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
...+.|..+...+..++..+.++.++++.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778889999999999999999999887764
No 65
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=44.60 E-value=30 Score=22.06 Aligned_cols=55 Identities=7% Similarity=0.002 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHH
Q psy14230 19 CQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVK 76 (110)
Q Consensus 19 lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~ 76 (110)
|.+++..|..++.+|+..+.....+.-=-.-.. +..||+++. .+.+-.+|.....
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~~~~~w~~~~~~Cy~~~~---~~~tw~~A~~~C~ 57 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNH---ERMPFSKVKALCS 57 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCEEEEEE---EEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCeEEeCCEEEEEeC---CCCCHHHHHHHHH
Confidence 344555555555555555555554321112223 568998653 3456667766655
No 66
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=43.91 E-value=1e+02 Score=25.45 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----C-CchhHHhhcchhHhccHHHHHHHHHHh
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM-----K-DGEVYKLIGPILVKQEMEEAKQNVKKR 78 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l-----~-d~~~yKlVG~vLV~~~~~ea~~~l~~r 78 (110)
+||.+....+.++.. .....+......+..-...+...++|...+ . |..+=.-.|......+-+.+...+-.+
T Consensus 419 lP~~l~~~~~~i~~~-~g~~~l~~~~~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~w~r~~S~~~~~~l~~~ 497 (704)
T 2xs1_A 419 VPQSILTKSRSVIEQ-GGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAE 497 (704)
T ss_dssp CCHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHH
Confidence 677666666655432 123333333333333333333333332221 1 334444467666666778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 79 IDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 79 ~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+..+..-+..-...-..+.++++.+...|.
T Consensus 498 ~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~ 527 (704)
T 2xs1_A 498 GTNFRTVLDKAVQADGQVKECYQSHRDTIV 527 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999888888888888888887766553
No 67
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.17 E-value=54 Score=19.91 Aligned_cols=33 Identities=6% Similarity=0.129 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 17 q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
+.|+.++..+...+..+..++.-...+.+.+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~ 35 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 35 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888877777776654
No 68
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=42.65 E-value=38 Score=19.75 Aligned_cols=77 Identities=25% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C--CchhHHhhcchhHhccHHHHHHHHHHhHHHH
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM-K--DGEVYKLIGPILVKQEMEEAKQNVKKRIDYI 82 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l-~--d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i 82 (110)
|..+......|.....+++ ..++.....+..|... . .+.-|. ..+ .....+...+...++.|
T Consensus 11 ~e~l~~~A~~~~~~~~~i~----------~~l~~L~~~~~~L~~~W~G~a~~af~---~~~--~~~~~~~~~~~~~L~~i 75 (93)
T 4ioe_A 11 PEELERIAGNFKNAAGEAQ----------SQINRLEGDINSLEGQWAGATQAKFR---GEF--IQSKQAMQQYIPILEGI 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHTTTSSCHHHHHHHH---HHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhcCchhhHHHH---HHH--HHHHHHHHHHHHHHHHH
Confidence 5556666666655554444 4444444444444321 1 122332 111 12223344445555556
Q ss_pred HHHHHHHHHHHHHHH
Q psy14230 83 SAELKRHDDTIATLD 97 (110)
Q Consensus 83 ~~~i~~l~~~~~~~~ 97 (110)
...+.+.-..+.+.+
T Consensus 76 ~~~L~~~A~~~~~~D 90 (93)
T 4ioe_A 76 STDLKRIADKFRNTD 90 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 666665555555443
No 69
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.49 E-value=52 Score=25.80 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.++..++..++..+.+|..+..++.++.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444445555444444443
No 70
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=42.12 E-value=71 Score=20.95 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
+..+....+..+.+.+..++..++..+..++..+..++.
T Consensus 77 ~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 557777888888888888888888888888888776654
No 71
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=41.74 E-value=69 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHH
Q psy14230 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYK 57 (110)
Q Consensus 11 ~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yK 57 (110)
..-.++......+..-...+..+...+.-.+..++++..+. -..||+
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~ 75 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYK 75 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555666777777777 778888
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.36 E-value=1.5e+02 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=9.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
.|+.++.+|+.++.+--..|.-|+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333333333
No 73
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=41.26 E-value=61 Score=23.36 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=34.0
Q ss_pred hhcchhHhccHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHhhcchh
Q psy14230 58 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHD----------DTIATLDTKQDTHLPIT 107 (110)
Q Consensus 58 lVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~----------~~~~~~~~~l~e~k~~l 107 (110)
.+||.|.+..-.-....+...+...+.-++.+. ..+.++.++++.+++++
T Consensus 176 ~~G~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~~~~i~e~~ 235 (244)
T 3gnl_A 176 FFGPCLLKEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIALVEDVL 235 (244)
T ss_dssp HHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 389999998777788888888777777666554 34445555555554443
No 74
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=41.15 E-value=33 Score=21.23 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 79 IDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 79 ~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.+.|+.+++.|+.++..+++++.++...+
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888888888888888876554
No 75
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=41.08 E-value=28 Score=26.66 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=23.1
Q ss_pred hHhccHHHHHHHHHHhHHHHHHHHHHHH
Q psy14230 63 LVKQEMEEAKQNVKKRIDYISAELKRHD 90 (110)
Q Consensus 63 LV~~~~~ea~~~l~~r~e~i~~~i~~l~ 90 (110)
++..+.++.++.++.+++.+.+++..++
T Consensus 240 lA~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T 1lrz_A 240 LAYINFDEYIKELNEERDILNKDLNKAL 267 (426)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556889999999999988888888884
No 76
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=40.43 E-value=50 Score=23.48 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~ 97 (110)
-.++|+.+++.|-+.|..+.+++++..+++.
T Consensus 67 ~adqa~~nv~eRek~l~kEk~si~~s~kef~ 97 (199)
T 2ap3_A 67 AVKDLIKNADDRLKEFEKEEDAIKKSEQDFK 97 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999888887766543
No 77
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=40.24 E-value=38 Score=24.24 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=34.3
Q ss_pred hhcchhHhccHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHhhcchh
Q psy14230 58 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHD----DTIATLDTKQDTHLPIT 107 (110)
Q Consensus 58 lVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~----~~~~~~~~~l~e~k~~l 107 (110)
.+||.|.+....-....+...+...+.-++.+. ....++..++..+++.|
T Consensus 174 ~~G~~l~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~i~e~l 227 (230)
T 3lec_A 174 RFGPFLLSNNTTVFKEKWQNELNKLTFALNSIPNSKMEERAILEDKIQDIKEVL 227 (230)
T ss_dssp HHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHhhcCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 389999988777888888888887777776653 12225556666555544
No 78
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=39.66 E-value=75 Score=22.73 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=40.9
Q ss_pred chhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 53 GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 53 ~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
...-|+..|-|......|+...+.......-.+-..+......+..+..+++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l 67 (206)
T 3oa7_A 13 DILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRF 67 (206)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556778888888888899888887777777777777777777777766666544
No 79
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=39.51 E-value=93 Score=21.54 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CchhHHhhcchhHhc----cHHHHHHHHHH
Q psy14230 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK---DGEVYKLIGPILVKQ----EMEEAKQNVKK 77 (110)
Q Consensus 5 ~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~---d~~~yKlVG~vLV~~----~~~ea~~~l~~ 77 (110)
+...+......-.+++....++....+.++...+|......-|.... +.-++.+=+-.--++ --.+....+..
T Consensus 18 ~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ 97 (168)
T 3o0z_A 18 ANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQA 97 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666555544444322 334444222222222 12455667777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
|+..+..+++++...+.........+.+.|
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl 127 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDML 127 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887777777766666554
No 80
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=39.13 E-value=57 Score=19.02 Aligned_cols=86 Identities=9% Similarity=0.182 Sum_probs=45.8
Q ss_pred ChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CchhHHhhcchhHhccHHHHHHH
Q psy14230 1 MVEEV---QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL-MK--DGEVYKLIGPILVKQEMEEAKQN 74 (110)
Q Consensus 1 m~~~~---~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~-l~--d~~~yKlVG~vLV~~~~~ea~~~ 74 (110)
|++.| |..+......|.....+++.....+. ..+..|.. -. .+.-|. ..+ .........
T Consensus 3 M~~~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~----------~~v~~L~~~W~G~a~~af~---~~~--~~~~~~~~~ 67 (99)
T 3zbh_A 3 MAGVIRLTPEELRGVARQYNVESSNVTELIARLD----------QMSHTLQGIWEGASSEAFI---QQY--QELRPSFEK 67 (99)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHCCSHHHHHHH---HHH--HHHHHHHHH
T ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhccChHHHHHH---HHH--HHHHHHHHH
Confidence 44443 66677777777666655554443333 33333321 11 223343 122 134556666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
+..-+..|...+.+.-..+.+.+.+..
T Consensus 68 ~~~~L~~i~~~L~~~a~~~~~~d~~~a 94 (99)
T 3zbh_A 68 MAVLLNEVGQQLHNSATILEDTDQQIA 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888888877777654
No 81
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=39.00 E-value=67 Score=23.78 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 99 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~ 99 (110)
+..++...++.+++.++.+++.+++.+..+-..
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777776665
No 82
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=38.92 E-value=63 Score=19.44 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
+.++-+..++..++.+...+.++=..+...+.++..
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKq 39 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQ 39 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777666666543
No 83
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=38.90 E-value=50 Score=18.28 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
.|-+|-+..+.++++.|.+++.++-.
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666555543
No 84
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=38.17 E-value=66 Score=21.96 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=16.5
Q ss_pred HhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 57 KLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 57 KlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
+..||-+|..+..+ ...+..++.++..++..+.++...+.+
T Consensus 53 ~~~~~~~vs~~~~~-----~~~I~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 53 GAIGGNIVSHDDAL-----LNTLAILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp ----CHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555554322 223444444444444444444444433
No 85
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.08 E-value=37 Score=21.58 Aligned_cols=33 Identities=6% Similarity=0.064 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
...|+..++.|..+-..|+..+..++..++.+.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555666666666555555443
No 86
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.00 E-value=80 Score=20.36 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=27.3
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
-+.+....+..+..|++..+.....+...-..++.++.++++.|
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777666666666666666666665555543
No 87
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.90 E-value=73 Score=20.06 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDD 91 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~ 91 (110)
..++++...++..+..++++|..++.
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666666666666553
No 88
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.81 E-value=99 Score=21.06 Aligned_cols=87 Identities=13% Similarity=0.197 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 95 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~ 95 (110)
+..|+..+..-...|...+..+...+ .||+.| .+..|- =.+-+|- +-.-....++.|.+.+..++..-+..+..
T Consensus 60 ~~~L~~~l~~E~~~R~~aE~~~~~ie---~ElEeL-TasLFe-EAN~MVa-~ar~~~~~~e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 60 VKRLREDIAKENELRTKAEEEADKLN---KEVEDL-TASLFD-EANNMVA-DARKEKYAIEILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHH---HHHHHH-HHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333 333333 234554 3333332 22445667888999999999999999999
Q ss_pred HHHHHHhhcchhc
Q psy14230 96 LDTKQDTHLPITS 108 (110)
Q Consensus 96 ~~~~l~e~k~~l~ 108 (110)
++.++.+++.++.
T Consensus 134 lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 134 LTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
No 89
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.33 E-value=1.2e+02 Score=21.70 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=12.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+...++++..++..+++.+.++..++..+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 90
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=35.89 E-value=68 Score=23.23 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 66 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 66 ~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.+-+.++..+..|...+.+.+..++..+++++.+.+.++.
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~ 199 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVA 199 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554444444433
No 91
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=35.78 E-value=1.2e+02 Score=21.90 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHh
Q psy14230 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVK 65 (110)
Q Consensus 3 ~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~ 65 (110)
....|-+.+.|..-..+...+..+...-..+-+-+.-.-..-. ..+.. +-||.+|..
T Consensus 25 ~~~~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~-----~s~gs-~elG~~L~~ 81 (253)
T 2ykt_A 25 EQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELAS-----ESQGS-KELGDVLFQ 81 (253)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSSSC-HHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCcch-HHHHHHHHH
Confidence 4467888888888888888888887776666544443333221 11233 778888855
No 92
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=35.52 E-value=46 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 71 AKQNVKKRIDYISAELKRHDDTIATLDTKQ 100 (110)
Q Consensus 71 a~~~l~~r~e~i~~~i~~l~~~~~~~~~~l 100 (110)
....+..+++.+..++..++..+..++..+
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666555555544
No 93
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.46 E-value=69 Score=18.56 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=31.6
Q ss_pred cchhHhc--cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 60 GPILVKQ--EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 60 G~vLV~~--~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
|||=+.- ++..|+.+-+.++..+=+.-.++...+.-+++++..++.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 4444432 556677777788888777777777777777777776654
No 94
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=34.26 E-value=70 Score=18.56 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL 49 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~ 49 (110)
.++........+.....+.+...+.-++++.+|.+..++-++.
T Consensus 12 ekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~ 54 (64)
T 3t97_C 12 EKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEE 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777788888899999999999999999999987765
No 95
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.22 E-value=76 Score=18.97 Aligned_cols=41 Identities=5% Similarity=0.014 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKEL 47 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL 47 (110)
.-++....+.++....+..+...+.+.+..+.+....++-+
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555556666665555555555443
No 96
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.67 E-value=75 Score=18.74 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=23.6
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+.++..++..--.=+.++..+...+...+..+..+...++..|
T Consensus 35 k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 35 KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555545555555555555555555555555555443
No 97
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.96 E-value=66 Score=17.93 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=25.9
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 65 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 65 ~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
--+.++|-..|+ .+...+..+.+...++..++..++.+|
T Consensus 19 GY~~~EVD~FLd----~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 19 GYDEDEVNEFLA----QVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp EEEHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666655554 677888889999999999998887654
No 98
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.77 E-value=1.7e+02 Score=22.61 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+.+..+...|..+++.++.++.++++++..+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888764
No 99
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=32.09 E-value=61 Score=22.96 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=35.0
Q ss_pred hhcchhHhccHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHhhcchh
Q psy14230 58 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHD----DTIATLDTKQDTHLPIT 107 (110)
Q Consensus 58 lVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~----~~~~~~~~~l~e~k~~l 107 (110)
.+||.|.+..-.-....+...+..++.-+..+. ....++..++..+++.|
T Consensus 168 ~~G~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~e~l 221 (225)
T 3kr9_A 168 RFGPFLSKEVSPVFVQKWQKEAEKLEFALGQIPEKNLEERQVLVDKIQAIKEVL 221 (225)
T ss_dssp HHCTTHHHHCCHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 489999998877888888888888777777654 12225666666655544
No 100
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.07 E-value=87 Score=19.00 Aligned_cols=34 Identities=3% Similarity=0.088 Sum_probs=22.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.-.+-.+++.+..++.+|..++++..-+++.++.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4445566777777777777777777766666654
No 101
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.04 E-value=1.4e+02 Score=21.20 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~ 97 (110)
.|..+...+......+.+++.+.-.+.++++. .+|.- =.-.|+.+...|...-++|....++.+
T Consensus 143 ~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~----~L~~K------------F~~lLNeKK~KIR~lq~~Ll~~~~~~~ 206 (213)
T 1ik9_A 143 HLQKENERLLRDWNDVQGRFEKAVSAKEALET----DLYKR------------FILVLNEKKTKIRSLHNKLLNAAQERE 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH------------HHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444555555554444433 35541 223456666666666666666555555
Q ss_pred HHH
Q psy14230 98 TKQ 100 (110)
Q Consensus 98 ~~l 100 (110)
+..
T Consensus 207 ~~~ 209 (213)
T 1ik9_A 207 KDI 209 (213)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
No 102
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.95 E-value=1.2e+02 Score=20.61 Aligned_cols=47 Identities=9% Similarity=0.205 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLM 50 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l 50 (110)
++..++-+.|+.-..|-..+......+.........++...+++..+
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l 49 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTL 49 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888777777766666666666666655544
No 103
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=31.47 E-value=1.1e+02 Score=21.57 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 82 ISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 82 i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
|...+..+......+.....+.+..|
T Consensus 292 i~~~~~~l~~rw~~l~~~~~~R~~~L 317 (322)
T 1u4q_A 292 ITAKMKGLKGKVSDLEKAAAQRKAKL 317 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 104
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=31.16 E-value=57 Score=16.59 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 81 YISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
.+-.++-++++++...+.+++.+
T Consensus 7 Sm~~Rl~kVE~qv~~md~KLd~l 29 (33)
T 2ovc_A 7 SMMGRVVKVEKQVQSIEHKLDLL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777654
No 105
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=31.01 E-value=1.2e+02 Score=20.57 Aligned_cols=37 Identities=8% Similarity=0.244 Sum_probs=24.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.+-....+.|-+|-+..+..|++.+.+++.++...+.
T Consensus 83 ~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke 119 (155)
T 2efr_A 83 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567777777777777777777776665554
No 106
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=30.98 E-value=1.1e+02 Score=19.65 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=34.7
Q ss_pred HHHHHhccCC-CchhHHhhcchh-HhccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14230 42 SVQKELDLMK-DGEVYKLIGPIL-VKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 95 (110)
Q Consensus 42 ~v~eeL~~l~-d~~~yKlVG~vL-V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~ 95 (110)
-|..-|+..+ -..+|-+-|-++ |..+....++.-+..+..|..++.++....+.
T Consensus 36 ~~~~~L~san~a~~~~~l~Gl~i~v~~~~~~kv~en~~~L~QIQ~ei~s~rd~hkR 91 (115)
T 1ezj_A 36 FARRALKSANYAEMTFNVCGLILSAEKSSARKVDENKQLLKQIQESVESFRDIYKR 91 (115)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888 778888555443 33344455555667788888888887744433
No 107
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.60 E-value=47 Score=20.99 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
|...++.+++.+.+++..+.++++.++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556677777777777777777776653
No 108
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.68 E-value=93 Score=18.57 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy14230 28 NQRQLLSAQLNENESVQKELD 48 (110)
Q Consensus 28 ~~~~~le~q~~E~~~v~eeL~ 48 (110)
..+..|+..+.-.+..+++|+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn 34 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELS 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 109
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=29.54 E-value=1.3e+02 Score=20.18 Aligned_cols=80 Identities=15% Similarity=0.279 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchh-----HhccHHHHHHHHHHhHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPIL-----VKQEMEEAKQNVKKRID 80 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vL-----V~~~~~ea~~~l~~r~e 80 (110)
..++....+|..|+.++..+..+..+|..++.. ++ ++.=|+-|-.-- .+.+.+ .-.-+.|-+
T Consensus 52 ~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~----------l~~~s~e~~~i~~EY~r~k~~K~dp~--y~ekK~Rc~ 119 (140)
T 1xaw_A 52 RNFDTGLQEYKSLQSVLDEINKELSRLDKELDD----------YREESEEYMAAADEYNRLKQVKGSAD--YKSKKNHCK 119 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------SCTTSHHHHHHHHHHHHHHHHHTSHH--HHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHH
Confidence 357778888999999999998888888877765 35 555565320000 000110 011123555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14230 81 YISAELKRHDDTIATLDT 98 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~ 98 (110)
+|..-+.-+...|.+.++
T Consensus 120 yL~~KLsHIK~lI~~YD~ 137 (140)
T 1xaw_A 120 QLKSKLSHIKKMVGDYDR 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 666666666666666554
No 110
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.85 E-value=1e+02 Score=18.90 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 82 ISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 82 i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+..+++.-.++|+.++++++.++..|
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888777665
No 111
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.71 E-value=68 Score=20.96 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-CchhHHhhcchhHhccHHHHHHHHH
Q psy14230 12 ELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDL--MK-DGEVYKLIGPILVKQEMEEAKQNVK 76 (110)
Q Consensus 12 ~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~--l~-d~~~yKlVG~vLV~~~~~ea~~~l~ 76 (110)
.+.....|+..++.+.+++..+...+........---. .. +..||+++. .+.+-.+|.....
T Consensus 14 ~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~Cp~gw~~~~~~CY~~~~---~~~tw~~A~~~C~ 78 (182)
T 3kqg_A 14 DLEKASALNTKIRALQGSLENMSKLLKRQNDILQVVSQGWKYFKGNFYYFSL---IPKTWYSAEQFCV 78 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEETTEEEEECS---SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEeCCEEEEEEC---CCCCHHHHHHHHH
Confidence 33444445555555555554444444433332222111 12 457888654 3456677766655
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.70 E-value=84 Score=17.75 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENE 41 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~ 41 (110)
.|..+-..|...+..|..++....
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444433
No 113
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.45 E-value=94 Score=18.25 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+++..=+.++..|+..+..-+..|..+..++..++.++.
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455567777778888888888888888888877653
No 114
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=28.33 E-value=81 Score=22.62 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+....+..+++.|..++.+++..+..++..+..++..+
T Consensus 76 ~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~ 113 (249)
T 3qao_A 76 DKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEI 113 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566777888888888888888888887777665543
No 115
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=28.31 E-value=77 Score=20.67 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHH
Q psy14230 23 YQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVK 76 (110)
Q Consensus 23 l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~ 76 (110)
++.|..++..|+..+.......-=-.-.. ...||+++. .+.+-.+|.....
T Consensus 25 l~~L~~~~~~L~~~l~~l~~~~~~~~~~~~~~~Cy~~~~---~~~tw~~A~~~C~ 76 (168)
T 1buu_A 25 LANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNH---ERMPFSKVKALCS 76 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCEEEEEE---EEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCeEEECCEEEEEeC---CccCHHHHHHHHH
Confidence 34444444444444444333221112223 678998653 3456666666655
No 116
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.28 E-value=1.4e+02 Score=22.63 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLP 105 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~ 105 (110)
.+.++..|+..++.++.+|.+++.++.++..
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544443
No 117
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=28.18 E-value=65 Score=19.87 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
..+..+++..++...+.++.++..++.++-
T Consensus 54 ~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 54 LGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455666677777777777777776653
No 118
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=28.10 E-value=78 Score=17.49 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=10.3
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy14230 72 KQNVKKRIDYISAELKRHDD 91 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~ 91 (110)
+..|+.++..|+..+..+..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 119
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=27.96 E-value=1.1e+02 Score=18.93 Aligned_cols=38 Identities=8% Similarity=0.201 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
+....|+.....+..+++.+......+..++..++.+.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777777777654
No 120
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=27.90 E-value=1.1e+02 Score=18.83 Aligned_cols=36 Identities=6% Similarity=0.098 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNE 39 (110)
Q Consensus 4 ~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E 39 (110)
++.|++-..|.+|.+-+..+-.+..+........++
T Consensus 46 ~lRPkL~~li~kysqKk~eL~~Ln~kl~~a~~~Yd~ 81 (88)
T 2pjw_H 46 PLRPQVTRMLGKYAKEKEDMLSLRQVLANAERSYNQ 81 (88)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888888777766655543
No 121
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.74 E-value=75 Score=17.62 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=12.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14230 72 KQNVKKRIDYISAELKRHDDTIATLD 97 (110)
Q Consensus 72 ~~~l~~r~e~i~~~i~~l~~~~~~~~ 97 (110)
...|+.++..|+.+-..|..++..+.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444443
No 122
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=27.43 E-value=64 Score=19.80 Aligned_cols=31 Identities=10% Similarity=0.349 Sum_probs=17.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQ 100 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l 100 (110)
+....+..+++.|..++..+...+..++..+
T Consensus 74 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 74 DPRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666555544
No 123
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=26.94 E-value=1.3e+02 Score=20.30 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=30.6
Q ss_pred HhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 64 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101 (110)
Q Consensus 64 V~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~ 101 (110)
-+..++++...+...+..++.++..|+-+.+...+++.
T Consensus 23 Te~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 23 TPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999999999999998888887766665
No 124
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.71 E-value=94 Score=17.69 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 78 RIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 78 r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
+++.|+.+++.|...-..+..++..|+..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555443
No 125
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=26.35 E-value=1.3e+02 Score=19.29 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=35.6
Q ss_pred cchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 60 GPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 60 G~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
|....++-.--.+..++..+..+..++..++..+..++.++..++
T Consensus 40 GsTVEERGl~nsVk~~et~i~~~t~~v~t~k~~i~~~e~~vqalq 84 (113)
T 1aa0_A 40 GSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQ 84 (113)
T ss_dssp CSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeccccchhhhccccchhhhheeecccccchhhhhhhhHHHH
Confidence 445556666667788888888888889888888888888888776
No 126
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.41 E-value=85 Score=16.75 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 79 IDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 79 ~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
+..++.++..+++.+.-+..+++.++
T Consensus 22 laaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455666666666666666655543
No 127
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.30 E-value=1.4e+02 Score=19.11 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+..++...+..+++.|..++..+......+..-+..+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMRDQLLALANAC 112 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777777666655543
No 128
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.30 E-value=77 Score=16.19 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESV 43 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v 43 (110)
.++|.....++......|+++..-....
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4566667777777777777766655443
No 129
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.22 E-value=1e+02 Score=23.77 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
..++.++.+...++..+++++.++.++.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443333
No 130
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=25.21 E-value=1.2e+02 Score=20.14 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
+|++..+-.+++.+..++..+..++.++.++....
T Consensus 97 ed~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 97 DDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777788888888888887777777665544
No 131
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.17 E-value=1.6e+02 Score=20.54 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 68 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 68 ~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.++....+..+++.|..++..+......++..+..+.
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 113 (278)
T 1r8e_A 77 MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMK 113 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888887777777777665544
No 132
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=25.07 E-value=1.2e+02 Score=18.17 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIATL 96 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~ 96 (110)
+..+|+-.|...++.|++..+.++.++..-
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e 32 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQE 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666543
No 133
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.04 E-value=1.4e+02 Score=22.58 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=10.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDT 98 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~ 98 (110)
..|...++.++..|..++.++..+..
T Consensus 29 ~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 29 QELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 134
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.97 E-value=91 Score=18.24 Aligned_cols=28 Identities=4% Similarity=0.184 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 10 ENELNLFKQCQKEYQKVLNQRQLLSAQL 37 (110)
Q Consensus 10 Q~~i~~~q~lq~~l~~l~~~~~~le~q~ 37 (110)
|...++|-.|+.++.++..++..+..++
T Consensus 28 QDeFAKWaKL~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 28 QDNYAKWTKNNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666665555444
No 135
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.83 E-value=1.5e+02 Score=19.31 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 77 KRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 77 ~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.+.+.+...+..++.++.+++..+..+...+
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666655555555544433
No 136
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.58 E-value=1.1e+02 Score=17.96 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcchhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14230 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIA 94 (110)
Q Consensus 15 ~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~ 94 (110)
+++.|+.+..........++..+.+.+..... .++-+..|.+++..++.++++.+..+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~---------------------~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQ---------------------LEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554433211 234456688888888888888888888
Q ss_pred HHHHHHHhhcch
Q psy14230 95 TLDTKQDTHLPI 106 (110)
Q Consensus 95 ~~~~~l~e~k~~ 106 (110)
+...++.+..+.
T Consensus 66 ~a~~kLeeaek~ 77 (81)
T 1ic2_A 66 DAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH
Confidence 888888776554
No 137
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=24.35 E-value=1.4e+02 Score=18.80 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchhc
Q psy14230 75 VKKRIDYISAELKRHDDTIATLDTKQDTHLPITS 108 (110)
Q Consensus 75 l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l~ 108 (110)
+..++..+..++..|+.....++.-+..++..|.
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~ 37 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLR 37 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888877776653
No 138
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.33 E-value=1.4e+02 Score=18.85 Aligned_cols=34 Identities=12% Similarity=0.322 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 102 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e 102 (110)
.+-+..+..+++.++.+-++|...+..++-++..
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999998888865
No 139
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.32 E-value=1.1e+02 Score=17.62 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy14230 83 SAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 83 ~~~i~~l~~~~~~~~~~l~e~ 103 (110)
..++..+...++.++-+++.+
T Consensus 55 k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555443
No 140
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=24.24 E-value=94 Score=24.42 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQR 30 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~ 30 (110)
+..+|+.++..|..+..+|.++..+..+-
T Consensus 85 i~sLp~~v~~rI~aLk~lQ~e~~~le~ef 113 (417)
T 2ayu_A 85 VGGLPKNVKEKLLSLKTLQSELFEVEKEF 113 (417)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999988876643
No 141
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=24.14 E-value=1.3e+02 Score=18.38 Aligned_cols=88 Identities=13% Similarity=0.215 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHHHhHH
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVKKRID 80 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~~r~e 80 (110)
++++|.+++..+.....+-.+++.+..++... .... +.....++ +.+.-. . .=|......+.+.-+.++.
T Consensus 13 ie~LP~El~r~~~~irelD~~~~~~~~~i~~~---~~~~---~~~~~~~~~~~r~~~-l--~~I~~~~~~~~~l~dEKv~ 83 (104)
T 4afl_A 13 IENLPFELQRNFQLMRDLDQRTEDLKAEIDKL---ATEY---MSSARSLSSEEKLAL-L--KQIQEAYGKCKEFGDDKVQ 83 (104)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HTCCSCCCHHHHHHH-H--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHCCCCChhhhHHH-H--HHHHHHHHHHHHHHHHHHH
Confidence 57899999999988888888888777764332 1111 11122222 222111 1 1233445556666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14230 81 YISAELKRHDDTIATLDT 98 (110)
Q Consensus 81 ~i~~~i~~l~~~~~~~~~ 98 (110)
-...-.+-+++.+..++.
T Consensus 84 lA~~~~dlvdkhirrLD~ 101 (104)
T 4afl_A 84 LAMQTYEMVDKHIRRLDT 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 656666666666655554
No 142
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=23.67 E-value=1.1e+02 Score=17.36 Aligned_cols=42 Identities=7% Similarity=0.138 Sum_probs=29.0
Q ss_pred hhHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 62 ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 62 vLV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
++=+.+.-+++=.+...+..+..+.+++.+.+.+=++-=..+
T Consensus 2 ~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~L 43 (56)
T 2w6b_A 2 PLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDL 43 (56)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888889999998888888777655544333
No 143
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.52 E-value=2.7e+02 Score=21.81 Aligned_cols=17 Identities=0% Similarity=-0.126 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy14230 87 KRHDDTIATLDTKQDTH 103 (110)
Q Consensus 87 ~~l~~~~~~~~~~l~e~ 103 (110)
..|...|.+.-.+|+.+
T Consensus 137 r~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444443444333
No 144
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=23.14 E-value=90 Score=24.13 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 2 VEEVQKKLENELNLFKQCQKEYQKVLNQR 30 (110)
Q Consensus 2 ~~~~~~~~Q~~i~~~q~lq~~l~~l~~~~ 30 (110)
|..+|+.++..|..+..+|.++..+..+-
T Consensus 44 m~sLp~~v~~rI~aLk~lQ~E~~~le~ef 72 (359)
T 3fs3_A 44 MTDLTEEQKETLKKLKLYQKEYYDYESKF 72 (359)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999988887654
No 145
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.97 E-value=1.5e+02 Score=18.87 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14230 18 QCQKEYQKVLNQRQLLSAQLNENESVQKELD 48 (110)
Q Consensus 18 ~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~ 48 (110)
.+++++.....++..+..++++.+...+.|+
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555554444
No 146
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.96 E-value=1.9e+02 Score=20.02 Aligned_cols=52 Identities=17% Similarity=0.338 Sum_probs=33.0
Q ss_pred hhHHhhcchh-Hhc-cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 54 EVYKLIGPIL-VKQ-EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 54 ~~yKlVG~vL-V~~-~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
++|. +-+|| |+. -+++|...+......|+.+-+.+..-..+..+-.+..+++
T Consensus 3 ~~yp-le~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k 56 (169)
T 3k29_A 3 VRYP-LEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQK 56 (169)
T ss_dssp CCCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 33443 343 3688888888888888777777777666666555444443
No 147
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=22.94 E-value=1.7e+02 Score=19.26 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy14230 84 AELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 84 ~~i~~l~~~~~~~~~~l~e~k 104 (110)
..+..+......+.....+.+
T Consensus 185 ~~~~~l~~~w~~l~~~~~~R~ 205 (213)
T 1cun_A 185 AKMKGLKGKVSDLEKAAAQRK 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333
No 148
>3dlq_I Interleukin-22; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} SCOP: a.26.1.3 PDB: 1m4r_A 3g9v_B 3q1s_I 1ykb_A* 3dgc_L*
Probab=22.86 E-value=59 Score=21.97 Aligned_cols=56 Identities=7% Similarity=0.105 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHhhcch
Q psy14230 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKLIGPI 62 (110)
Q Consensus 6 ~~~~Q~~i~~~q~lq~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~d~~~yKlVG~v 62 (110)
.|.+...++.|..++..++.-.....- +..-+..+.+....+.+++.-+||.+|..
T Consensus 84 ~p~i~~l~nsf~~L~~~L~~C~~~~~c-~~~~~~v~~ik~~f~kL~~~g~~KAiGEL 139 (151)
T 3dlq_I 84 QPYMQEVVPFLARLSNRLSTCHIEGDD-LHIQRNVQKLKDTVKKLGESGEIKAIGEL 139 (151)
T ss_dssp TTHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHTHHHHHHHHHTH
T ss_pred CCcHHHHHHHHHHHHHHHHhCcccCCc-cchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456777888888888888765431110 01111456667777777666789988864
No 149
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.79 E-value=1.2e+02 Score=22.28 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.....+..+.++|...++.+..++..+.++++.++
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666666666666666666666666554
No 150
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=22.33 E-value=1.3e+02 Score=17.90 Aligned_cols=13 Identities=0% Similarity=0.393 Sum_probs=4.7
Q ss_pred HHHhHHHHHHHHH
Q psy14230 75 VKKRIDYISAELK 87 (110)
Q Consensus 75 l~~r~e~i~~~i~ 87 (110)
++.++..++..+.
T Consensus 50 ln~kL~~lE~~L~ 62 (73)
T 3pp5_A 50 LNEKLTILDRQVD 62 (73)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 151
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.91 E-value=1.7e+02 Score=19.07 Aligned_cols=31 Identities=6% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy14230 76 KKRIDYISAELKRHDDTIATLDTKQDTHLPI 106 (110)
Q Consensus 76 ~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~ 106 (110)
.++++.++.+|+.++.++++...+++.++..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5578888899999999999888888887754
No 152
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.67 E-value=1.5e+02 Score=18.15 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 70 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 70 ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
.-+..+...++.+..+-.++.-++..+...+.+++.+|
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34566777788888888888888888888888877664
No 153
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.66 E-value=1.1e+02 Score=16.45 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=18.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy14230 73 QNVKKRIDYISAELKRHDDTIATLDTKQDTHLPIT 107 (110)
Q Consensus 73 ~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k~~l 107 (110)
..|+.|...++.....|+..+.-++.+=.-++.++
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34555555555555555555555555544444443
No 154
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.32 E-value=1.3e+02 Score=17.56 Aligned_cols=15 Identities=7% Similarity=0.147 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy14230 86 LKRHDDTIATLDTKQ 100 (110)
Q Consensus 86 i~~l~~~~~~~~~~l 100 (110)
...|...+..+..++
T Consensus 52 n~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 52 NDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 155
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.31 E-value=96 Score=15.85 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 16 FKQCQKEYQKVLNQRQLLSAQLNENESV 43 (110)
Q Consensus 16 ~q~lq~~l~~l~~~~~~le~q~~E~~~v 43 (110)
.++|.....++......|+++..-....
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3566666677777777777666555443
No 156
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=21.14 E-value=1.3e+02 Score=19.65 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHhhcchhHhccHHHHHHHHH
Q psy14230 20 QKEYQKVLNQRQLLSAQLNENESVQKELDLMK-DGEVYKLIGPILVKQEMEEAKQNVK 76 (110)
Q Consensus 20 q~~l~~l~~~~~~le~q~~E~~~v~eeL~~l~-d~~~yKlVG~vLV~~~~~ea~~~l~ 76 (110)
.+++..|..++..|+.++.....+.-=-.-.. ...||+++. .+.+-.+|.....
T Consensus 30 ~~~l~~L~~~l~~Lq~~l~~l~~~~~~~~~~~~~~~Cy~~~~---~~~~w~~A~~~C~ 84 (177)
T 1pwb_A 30 RQQVEALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAG---FVKPFTEAQLLCT 84 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE---EEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCeEEECCEEEEEcC---CccCHHHHHHHHH
Confidence 33344455555555555544444211111123 568998653 3456666666655
No 157
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.04 E-value=1.7e+02 Score=20.01 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=24.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14230 74 NVKKRIDYISAELKRHDDTIATLDTKQDTHL 104 (110)
Q Consensus 74 ~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~k 104 (110)
.|+.+++.+...+..-+.++.+++++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677788888888888888888888887654
No 158
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.86 E-value=1.6e+02 Score=19.26 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14230 67 EMEEAKQNVKKRIDYISAELKRHDDTIAT 95 (110)
Q Consensus 67 ~~~ea~~~l~~r~e~i~~~i~~l~~~~~~ 95 (110)
++.+.+..+..+...++++++.+..++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544433
No 159
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.74 E-value=1.2e+02 Score=18.13 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=0.0
Q ss_pred hcchhHh
Q psy14230 59 IGPILVK 65 (110)
Q Consensus 59 VG~vLV~ 65 (110)
|||-.|.
T Consensus 5 ~g~n~~~ 11 (75)
T 3a7o_A 5 IGGNIVS 11 (75)
T ss_dssp -------
T ss_pred CCCCCcC
Confidence 5665544
No 160
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=20.48 E-value=2.4e+02 Score=20.95 Aligned_cols=35 Identities=14% Similarity=0.350 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14230 69 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 103 (110)
Q Consensus 69 ~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l~e~ 103 (110)
..|...-+.+...|...+..+++....+++.+++.
T Consensus 208 ~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~ 242 (268)
T 2yo3_A 208 EEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEI 242 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 161
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=20.27 E-value=65 Score=20.45 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14230 7 KKLENELNLFKQCQKEYQKVL 27 (110)
Q Consensus 7 ~~~Q~~i~~~q~lq~~l~~l~ 27 (110)
|..+..+..|+.++.+++...
T Consensus 39 ~ea~~li~~F~~~q~~~q~~q 59 (122)
T 2oeq_A 39 ETAYRMFANVRDIQLRLHEKQ 59 (122)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999998888765
No 162
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=20.12 E-value=1.2e+02 Score=20.79 Aligned_cols=38 Identities=8% Similarity=0.155 Sum_probs=29.9
Q ss_pred hHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14230 63 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQ 100 (110)
Q Consensus 63 LV~~~~~ea~~~l~~r~e~i~~~i~~l~~~~~~~~~~l 100 (110)
|...+-+.++..+..|+..+.++...++.+++++++.+
T Consensus 144 f~~a~d~~ik~yLa~rl~~~k~~~~~l~~~L~~~~~~~ 181 (182)
T 2y3w_A 144 LLPGSDTDIKKYLASCLSSVKEEKQQLQQKLRKTEEDL 181 (182)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34446788889999999999999999998888887654
Done!