RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14230
(110 letters)
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 44.9 bits (106), Expect = 2e-07
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELD-LMKDGEVYKLIGP 61
+ + +++ L + Q++ Q V+ Q+Q + +L E + E++ L D VYK +G
Sbjct: 2 QNIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGT 61
Query: 62 ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 101
++VK ++A +K++I+ + L + L+ K
Sbjct: 62 LIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLK 101
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: a.2.5.1 PDB: 1fxk_B
Length = 107
Score = 37.6 bits (87), Expect = 9e-05
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKEL-DLMKDGEVYKLIGPILVK 65
+ ++++L F+Q Q++ Q + Q+Q + Q+NE + +EL D EVYK G IL++
Sbjct: 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIR 60
Query: 66 QEMEEAKQNVKKRIDYISAELKR 88
+E + ++++++ + K
Sbjct: 61 VAKDELTEELQEKLETLQLREKT 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 5e-04
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 29/126 (23%)
Query: 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQL-LSAQLNENESVQKEL------------- 47
V V KL + KQ KE + L L +L ++ + +
Sbjct: 404 VMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 48 DLMK---DGEVYKLIGPILVKQEMEEAKQNVKKRI----DYISAELKRHDDTI-----AT 95
DL+ D Y IG L E E + + + + ++ ++ RHD T +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSI 520
Query: 96 LDTKQD 101
L+T Q
Sbjct: 521 LNTLQQ 526
Score = 27.1 bits (59), Expect = 1.3
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 4 EVQKKLENELNLFK-QCQ----KEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYKL 58
VQ N F C+ +++V + LSA + S+ + EV L
Sbjct: 252 NVQNA--KAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 59 IGPIL-VKQEM--EEAKQNVKKRIDYISAELKRHDDTI 93
+ L + + E +R+ I+ ++ T
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Score = 24.8 bits (53), Expect = 9.1
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKEL-DLMKDGEVYK--LIGPIL 63
LE L Q + + + +++ +Q EL L+K + Y+ L+ +L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS---IQAELRRLLKS-KPYENCLL--VL 250
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.028
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 11/33 (33%)
Query: 72 KQNVKKRIDYISAELKRH-DDT-----I-ATLD 97
KQ +KK + A LK + DD+ I AT++
Sbjct: 19 KQALKK----LQASLKLYADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 0.064
Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 4 EVQ--KKLENELNLF 16
E Q KKL+ L L+
Sbjct: 18 EKQALKKLQASLKLY 32
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 27.0 bits (60), Expect = 1.4
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 50 MKDGEVYKLIGPILVKQEMEEAKQN 74
M G + K+ GP ++ + M A+
Sbjct: 1 MIQGVIQKIAGPAVIAKGMLGARMY 25
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 26.6 bits (59), Expect = 1.6
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEVYK 57
+++ LE+E+ + +K + ++NE + + LD+++ + +K
Sbjct: 138 PSKIKDALESEIQKVIERRK------KSLNEVERKINEEDYAENTLDVLQSTDGFK 187
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; HET: MSE; 1.50A {Enterococcus
faecalis} SCOP: a.275.1.1
Length = 83
Score = 25.3 bits (55), Expect = 2.5
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 39 ENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR-HDDTIATLD 97
+ + + L+ + +E A + +YI+A LK +++
Sbjct: 20 TMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARNYNYINAILKDWEQRGFKSVE 79
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 26.2 bits (58), Expect = 2.8
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 50 MKDGEVYKLIGPILVKQEMEEAKQN--VKKRIDYISAELKRHDDTIATLDTKQDT 102
+ G + ++ GP++V M+ AK V+ + E+ R + A + ++T
Sbjct: 2 VAKGRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEET 56
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 25.5 bits (56), Expect = 4.8
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKE-------LDLMKDG 53
M + KKL+ E ++ +K + + N+ L +++E K L++
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Query: 54 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 99
E KL + + EE +N R+ + E+ + + T+
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 25.2 bits (56), Expect = 5.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 68 MEEAKQNVKKRIDYISA 84
M+ A V +IDYI+
Sbjct: 300 MKMALSTVTSKIDYINP 316
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 5.3
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKELDLMKDGEV-YKLIG 60
++ + L + +K + + LN + L EN S + D + + LIG
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWL-----ENPSNTPDKDYLLSIPISCPLIG 242
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 25.2 bits (56), Expect = 6.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 68 MEEAKQNVKKRIDYISA 84
M+ A V IDY+++
Sbjct: 281 MKMAMHGVDTPIDYLNS 297
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 25.1 bits (54), Expect = 6.2
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 31 QLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 90
LL L SV + + + + E Q + + + RH+
Sbjct: 78 NLLPDNLLNRPSVGLVQSWYMQS----FLELLEYENKSPEDPQVLDNFLQVLIKVRNRHN 133
Query: 91 DTIATL 96
D + T+
Sbjct: 134 DVVPTM 139
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
structural genomics, NPPSFA, NATI project on protein
structural and functional analyses; HET: ANP; 1.86A
{Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Length = 394
Score = 24.8 bits (53), Expect = 7.4
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 31 QLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 90
+L QL SVQ L+ + ++ + ++ + +D + RH
Sbjct: 56 DILPTQLVNTSSVQLVKSWYIQS----LMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHH 111
Query: 91 DTIATL 96
+ + T+
Sbjct: 112 NVVPTM 117
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 24.6 bits (54), Expect = 7.5
Identities = 4/8 (50%), Positives = 7/8 (87%)
Query: 50 MKDGEVYK 57
+KDG +Y+
Sbjct: 404 IKDGLLYE 411
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 24.6 bits (53), Expect = 8.7
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 31 QLLSAQLNENESVQKELDLMKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 90
+ L + N ++ +L Y L + + + + + L H
Sbjct: 80 RSLPFIIGCNPTILHVHEL------YIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHK 133
Query: 91 DTIATL 96
D + L
Sbjct: 134 DVVTLL 139
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 24.6 bits (54), Expect = 10.0
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 23 YQKVLN-QRQLLSAQLNENESVQKEL 47
Y +VL+ +R L + + +
Sbjct: 402 YLEVLDAERSLFATRQTLLDLNYARQ 427
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.333
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,468,394
Number of extensions: 74027
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 67
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)