BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14231
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZDI|A Chain A, Crystal Structure Of Prefoldin From Pyrococcus
          Horikoshii Ot3
 pdb|2ZDI|B Chain B, Crystal Structure Of Prefoldin From Pyrococcus
          Horikoshii Ot3
          Length = 117

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 3  DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAEL 37
          D ++YK +G ++VK   E+A Q +K++I+ +   L
Sbjct: 52 DAQIYKTVGTLIVKTTKEKAVQELKEKIETLEVRL 86


>pdb|2J1Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Arginine Kinase
          Length = 357

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 10  IGPILVKQEMEEAKQNVKKRIDYISAELK 38
             P L KQ+ EE +  VK +++ +S EL+
Sbjct: 136 FNPCLKKQQYEEMESRVKGQLESMSGELR 164


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,650,667
Number of Sequences: 62578
Number of extensions: 46245
Number of successful extensions: 135
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 4
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)