BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14231
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03958|PFD6_MOUSE Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1
Length = 127
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 52/67 (77%)
Query: 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
V+KL+GP+LVKQE+ EA+ V KR+DYI+AE+KR++ + L+ + + RE L +LQQ+F
Sbjct: 56 VFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEF 115
Query: 66 QQEQAAK 72
Q+ QAAK
Sbjct: 116 QRAQAAK 122
>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770
PE=2 SV=1
Length = 125
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
D +VYKL GP+LVKQE+EE++QNV KRI+YIS ELK D + ++ HRE++ K Q
Sbjct: 56 DNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAKYQ 115
Query: 63 QQFQ 66
QQ Q
Sbjct: 116 QQCQ 119
>sp|O15212|PFD6_HUMAN Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1
Length = 129
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
V+KL+GP+LVKQE+ EA+ V KR+DYI+AE+KR++ + L+ + + RE L +LQQ+F
Sbjct: 56 VFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEF 115
Query: 66 QQEQ 69
Q+ Q
Sbjct: 116 QRAQ 119
>sp|Q5TJE6|PFD6_CANFA Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1
Length = 129
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
V+KL+GP+LVKQE+ EA+ V KR+DYI+AE+KR++ + L+ + + RE L +LQQ+F
Sbjct: 56 VFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEF 115
Query: 66 QQEQ 69
Q+ Q
Sbjct: 116 QRAQ 119
>sp|Q17Q89|PFD6_BOVIN Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1
Length = 129
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
V+KL+GP+LVKQE+ EA+ V KR+DYI+AE+KR++ + L+ + + RE L +LQQ+F
Sbjct: 56 VFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEF 115
Query: 66 QQEQ 69
Q+ Q
Sbjct: 116 QRAQ 119
>sp|A8Y197|PFD6_CAEBR Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6
PE=3 SV=1
Length = 128
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 46/63 (73%)
Query: 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
D +VYKL+GP+LV+Q++EEA+ V+KR+++I +E+KR + +I ++ K R+ + +Q
Sbjct: 51 DSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESEIKRVEASITDVNKKSIEQRDKVMNMQ 110
Query: 63 QQF 65
+ F
Sbjct: 111 KAF 113
>sp|P52554|PFD6_CAEEL Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6
PE=2 SV=1
Length = 126
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62
D +VYKLIG +LV+Q++EEA+ V+KR+++I +E KR + +I+ + K R+ + +Q
Sbjct: 51 DSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNMQ 110
Query: 63 QQF 65
+ F
Sbjct: 111 KSF 113
>sp|O14450|PFD6_SCHPO Probable prefoldin subunit 6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3A11.13 PE=3 SV=1
Length = 114
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDD 42
D +YK IGP LVKQ EEAK NVK R+D+I+ E+ R ++
Sbjct: 45 DSNIYKQIGPTLVKQSHEEAKTNVKTRLDFINKEIARLEN 84
>sp|P52553|PFD6_YEAST Prefoldin subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=YKE2 PE=1 SV=1
Length = 114
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61
+D VYKL G +L+ E EA+ NV KR+++I E+ R + I + + R L KL
Sbjct: 44 EDTPVYKLTGNVLLPVEQSEARTNVDKRLEFIETEITRCEKNIRDKQEELEKMRSELIKL 103
>sp|Q54M71|PFD6_DICDI Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6
PE=3 SV=1
Length = 140
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELK 38
+ ++YKL GP+L KQ EEA+ + R+D I+ LK
Sbjct: 66 EAKIYKLNGPVLFKQTKEEAENTITSRLDIINNNLK 101
>sp|Q8I3Y6|PFD6_PLAF7 Probable prefoldin subunit 6 OS=Plasmodium falciparum (isolate
3D7) GN=PFE0595w PE=3 SV=2
Length = 119
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 50
D ++KL+G +LVK+E + + +R+ YI+ E++ I + K
Sbjct: 50 DSVLHKLVGLVLVKEEKSKCYDTISRRLQYITGEIENRKKVITNSEEK 97
>sp|Q58394|PFDB_METJA Prefoldin subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=pfdB PE=3 SV=2
Length = 113
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 42/63 (66%), Gaps = 7/63 (11%)
Query: 5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64
EVYKL+G + VK++ E+ K+ ++++++ + EL+ + TL+ +++ + L +LQ++
Sbjct: 52 EVYKLVGGLFVKRKKEDVKKELEEKVETL--ELR-----VKTLEKQEEKLQSRLKELQEK 104
Query: 65 FQQ 67
Q+
Sbjct: 105 IQK 107
>sp|Q9CKA5|BAMD_PASMU Outer membrane protein assembly factor BamD OS=Pasteurella
multocida (strain Pm70) GN=bamD PE=3 SV=1
Length = 260
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTH---RENLTKLQQQFQQEQA 70
Q+ R+ YI A L RH+ IA K+D H + + QQ+ QA
Sbjct: 160 QDALARMAYIKASLARHELAIAKFYAKRDAHVAVANRVVGMLQQYPDTQA 209
>sp|Q5V1L3|PFDB_HALMA Prefoldin subunit beta OS=Haloarcula marismortui (strain ATCC 43049
/ DSM 3752 / JCM 8966 / VKM B-1809) GN=pfdB PE=3 SV=2
Length = 129
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65
+Y+ +G +LVK E +EA+ +++++++ + + TL+ +++ +E +LQ +
Sbjct: 56 MYREVGELLVKTEFDEAQDDLEEKVNSLEV-------RVETLEKQEERVQEQFEELQSEL 108
Query: 66 QQ 67
QQ
Sbjct: 109 QQ 110
>sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus
GN=Ddx4 PE=2 SV=1
Length = 713
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 10 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69
+GP+ K+++ E +N+ + E K+ D IAT ++ ++ ++Q ++EQ
Sbjct: 507 VGPVFKKRKLVEILRNIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 566
Query: 70 A 70
A
Sbjct: 567 A 567
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,710,147
Number of Sequences: 539616
Number of extensions: 762458
Number of successful extensions: 4749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 4627
Number of HSP's gapped (non-prelim): 179
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)