Query psy14231
Match_columns 75
No_of_seqs 107 out of 314
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:46:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3478|consensus 99.9 3.9E-26 8.5E-31 151.4 6.5 68 2-69 50-117 (120)
2 PRK09343 prefoldin subunit bet 99.8 2.8E-18 6.1E-23 113.3 8.2 64 2-72 52-115 (121)
3 COG1382 GimC Prefoldin, chaper 99.7 1E-16 2.2E-21 107.0 8.0 65 2-73 51-115 (119)
4 TIGR02338 gimC_beta prefoldin, 99.7 1.9E-16 4.1E-21 102.4 7.4 62 2-70 48-109 (110)
5 cd00632 Prefoldin_beta Prefold 99.6 1.2E-14 2.7E-19 93.0 7.8 61 2-62 44-104 (105)
6 PF01920 Prefoldin_2: Prefoldi 99.2 3.5E-11 7.7E-16 75.1 4.7 60 2-61 43-102 (106)
7 cd00890 Prefoldin Prefoldin is 98.7 1.7E-08 3.7E-13 64.8 4.8 61 2-62 67-128 (129)
8 PRK03947 prefoldin subunit alp 98.0 2.3E-05 5E-10 51.8 5.6 56 9-64 82-137 (140)
9 cd00584 Prefoldin_alpha Prefol 97.0 0.002 4.4E-08 41.8 5.0 57 4-67 70-126 (129)
10 PF02996 Prefoldin: Prefoldin 96.9 0.0041 8.9E-08 39.5 5.6 59 5-63 60-119 (120)
11 KOG4098|consensus 96.8 0.0066 1.4E-07 41.7 6.5 53 2-54 60-112 (140)
12 KOG3501|consensus 96.6 0.02 4.4E-07 38.1 7.6 63 2-71 48-110 (114)
13 COG1730 GIM5 Predicted prefold 96.5 0.017 3.7E-07 39.7 6.9 55 12-66 85-139 (145)
14 TIGR00293 prefoldin, archaeal 96.5 0.012 2.5E-07 38.1 5.8 47 11-57 76-122 (126)
15 PRK14011 prefoldin subunit alp 96.5 0.025 5.5E-07 38.6 7.7 50 12-61 79-128 (144)
16 PF05377 FlaC_arch: Flagella a 95.8 0.062 1.3E-06 31.7 6.1 42 29-70 1-42 (55)
17 PRK03947 prefoldin subunit alp 95.5 0.11 2.4E-06 34.2 7.2 48 25-72 91-138 (140)
18 PF13758 Prefoldin_3: Prefoldi 94.4 0.09 2E-06 34.3 4.3 43 9-58 55-98 (99)
19 cd00632 Prefoldin_beta Prefold 93.7 0.54 1.2E-05 29.7 6.7 48 22-69 57-104 (105)
20 KOG3048|consensus 92.6 1.2 2.6E-05 31.1 7.6 55 14-71 94-148 (153)
21 COG3883 Uncharacterized protei 92.6 1.5 3.1E-05 33.0 8.6 54 16-69 33-86 (265)
22 PF14282 FlxA: FlxA-like prote 92.5 1.8 3.9E-05 27.8 7.9 51 20-70 18-72 (106)
23 PF06698 DUF1192: Protein of u 91.5 0.34 7.3E-06 28.9 3.4 39 11-49 10-49 (59)
24 PF02403 Seryl_tRNA_N: Seryl-t 90.6 1.8 3.8E-05 27.1 6.3 59 12-70 4-64 (108)
25 cd00890 Prefoldin Prefoldin is 90.6 1.4 3.1E-05 27.8 6.0 45 24-68 83-127 (129)
26 TIGR00293 prefoldin, archaeal 90.6 1.8 3.8E-05 27.8 6.4 43 24-66 82-124 (126)
27 PF11932 DUF3450: Protein of u 90.5 3.5 7.5E-05 29.6 8.5 52 19-70 47-98 (251)
28 PF01920 Prefoldin_2: Prefoldi 89.8 2.1 4.5E-05 26.1 6.1 41 28-68 62-102 (106)
29 PF08946 Osmo_CC: Osmosensory 89.6 0.99 2.1E-05 25.8 4.0 33 18-50 2-34 (46)
30 PF04728 LPP: Lipoprotein leuc 89.6 2.3 5E-05 25.1 5.7 39 37-75 5-43 (56)
31 KOG1760|consensus 89.4 2 4.3E-05 29.4 6.1 51 5-55 65-115 (131)
32 PF04102 SlyX: SlyX; InterPro 89.0 3.3 7.2E-05 24.6 6.9 51 19-69 2-52 (69)
33 PRK01203 prefoldin subunit alp 88.2 1.7 3.7E-05 29.4 5.2 36 27-62 86-121 (130)
34 COG5293 Predicted ATPase [Gene 88.1 3 6.5E-05 34.2 7.3 58 5-62 305-369 (591)
35 cd00584 Prefoldin_alpha Prefol 88.0 3.7 8.1E-05 26.3 6.6 42 25-73 84-125 (129)
36 COG1382 GimC Prefoldin, chaper 87.8 2.6 5.7E-05 28.2 5.9 41 15-62 71-111 (119)
37 PRK10884 SH3 domain-containing 87.8 6.7 0.00014 28.1 8.3 49 19-67 109-157 (206)
38 PF04508 Pox_A_type_inc: Viral 86.7 1.2 2.7E-05 22.0 2.8 20 36-55 2-21 (23)
39 PRK08032 fliD flagellar cappin 86.1 5.9 0.00013 31.1 7.8 42 25-66 410-451 (462)
40 PF07195 FliD_C: Flagellar hoo 86.1 5.3 0.00011 28.4 7.0 34 26-59 191-224 (239)
41 PF10779 XhlA: Haemolysin XhlA 86.0 5.3 0.00012 23.7 7.3 43 23-65 8-50 (71)
42 PRK05759 F0F1 ATP synthase sub 85.9 7.8 0.00017 25.5 7.5 49 22-70 29-77 (156)
43 PF10779 XhlA: Haemolysin XhlA 85.8 5.5 0.00012 23.7 7.0 46 24-69 2-47 (71)
44 PRK07353 F0F1 ATP synthase sub 85.4 7.7 0.00017 25.1 8.7 58 9-70 21-78 (140)
45 PRK08475 F0F1 ATP synthase sub 85.2 8.5 0.00018 26.3 7.5 49 23-71 48-96 (167)
46 PF11559 ADIP: Afadin- and alp 85.2 8.6 0.00019 25.4 8.7 65 4-68 34-99 (151)
47 PF02388 FemAB: FemAB family; 85.1 6.7 0.00015 30.2 7.6 50 13-62 234-293 (406)
48 PF07889 DUF1664: Protein of u 85.0 9.4 0.0002 25.7 7.9 52 16-67 56-107 (126)
49 PF12777 MT: Microtubule-bindi 85.0 1.9 4.2E-05 32.4 4.5 68 5-72 211-279 (344)
50 PF07195 FliD_C: Flagellar hoo 84.8 4.4 9.5E-05 28.8 6.1 43 20-62 192-234 (239)
51 PRK07352 F0F1 ATP synthase sub 84.7 10 0.00022 25.8 8.2 50 22-71 44-93 (174)
52 PHA01750 hypothetical protein 84.5 4.6 0.0001 25.0 5.3 45 15-59 28-73 (75)
53 PF10234 Cluap1: Clusterin-ass 84.5 10 0.00023 28.4 8.2 53 18-70 166-218 (267)
54 PRK14011 prefoldin subunit alp 84.5 8.9 0.00019 26.1 7.2 48 23-70 83-130 (144)
55 KOG1655|consensus 84.3 2.3 4.9E-05 31.2 4.5 39 16-54 14-52 (218)
56 PF14282 FlxA: FlxA-like prote 84.3 6.8 0.00015 25.1 6.3 46 26-71 17-66 (106)
57 PF05565 Sipho_Gp157: Siphovir 84.3 5.5 0.00012 27.2 6.2 37 23-59 49-85 (162)
58 PRK08032 fliD flagellar cappin 83.9 5.9 0.00013 31.1 6.9 47 24-70 402-452 (462)
59 PRK06231 F0F1 ATP synthase sub 83.8 13 0.00027 26.3 8.1 50 22-71 73-122 (205)
60 PRK09039 hypothetical protein; 83.4 9.9 0.00022 28.9 7.8 48 24-71 140-187 (343)
61 PF08826 DMPK_coil: DMPK coile 83.4 7.3 0.00016 23.2 7.9 48 21-68 11-58 (61)
62 COG1579 Zn-ribbon protein, pos 83.2 14 0.0003 27.4 8.2 51 19-69 94-144 (239)
63 COG4942 Membrane-bound metallo 83.1 6.8 0.00015 31.2 7.0 42 26-67 36-77 (420)
64 PRK14475 F0F1 ATP synthase sub 83.0 12 0.00026 25.3 8.1 50 22-71 35-84 (167)
65 PRK04406 hypothetical protein; 82.9 8.5 0.00018 23.5 7.8 49 19-67 9-57 (75)
66 PF10458 Val_tRNA-synt_C: Valy 82.7 3.7 8E-05 24.0 4.2 28 18-45 1-28 (66)
67 PF00261 Tropomyosin: Tropomyo 82.6 15 0.00033 26.2 8.5 46 24-69 186-231 (237)
68 CHL00019 atpF ATP synthase CF0 82.3 13 0.00029 25.4 8.1 50 22-71 49-98 (184)
69 PF14193 DUF4315: Domain of un 82.3 5.6 0.00012 25.0 5.1 34 29-62 2-35 (83)
70 PF06518 DUF1104: Protein of u 82.2 5.7 0.00012 25.4 5.3 34 1-35 6-39 (93)
71 PF02996 Prefoldin: Prefoldin 82.1 9.9 0.00021 23.7 6.6 43 26-68 75-117 (120)
72 PRK13460 F0F1 ATP synthase sub 82.1 13 0.00029 25.2 8.0 50 22-71 41-90 (173)
73 PRK09343 prefoldin subunit bet 82.1 8.4 0.00018 25.2 6.2 42 16-64 73-114 (121)
74 PRK13455 F0F1 ATP synthase sub 82.0 14 0.0003 25.3 8.1 49 23-71 53-101 (184)
75 PF05529 Bap31: B-cell recepto 81.1 11 0.00023 25.9 6.7 33 32-64 158-190 (192)
76 PRK13729 conjugal transfer pil 80.9 6.6 0.00014 31.8 6.3 44 23-66 78-121 (475)
77 PRK02793 phi X174 lysis protei 80.7 10 0.00022 22.9 7.4 49 19-67 6-54 (72)
78 PF10473 CENP-F_leu_zip: Leuci 80.6 16 0.00034 25.0 7.6 43 25-67 21-63 (140)
79 COG3883 Uncharacterized protei 80.5 14 0.00031 27.8 7.6 40 23-62 47-86 (265)
80 PRK07737 fliD flagellar cappin 80.5 12 0.00026 29.8 7.6 43 24-66 444-486 (501)
81 PRK04325 hypothetical protein; 80.5 10 0.00023 22.9 6.9 52 17-68 5-56 (74)
82 PF04102 SlyX: SlyX; InterPro 80.3 9.9 0.00021 22.5 7.4 44 26-69 2-45 (69)
83 PRK05729 valS valyl-tRNA synth 80.2 11 0.00024 31.8 7.6 53 18-70 808-867 (874)
84 TIGR02338 gimC_beta prefoldin, 80.2 8.9 0.00019 24.4 5.7 30 40-69 72-101 (110)
85 PF04111 APG6: Autophagy prote 79.9 16 0.00034 27.5 7.8 50 19-68 41-90 (314)
86 PRK14472 F0F1 ATP synthase sub 79.8 16 0.00035 24.8 8.1 50 22-71 43-92 (175)
87 PRK09173 F0F1 ATP synthase sub 79.6 15 0.00033 24.4 8.0 50 22-71 27-76 (159)
88 PRK09174 F0F1 ATP synthase sub 79.6 19 0.00042 25.5 8.7 60 7-70 67-126 (204)
89 PRK13453 F0F1 ATP synthase sub 79.5 17 0.00036 24.8 8.1 49 22-70 43-91 (173)
90 PF13118 DUF3972: Protein of u 79.5 15 0.00032 24.9 6.8 59 10-68 60-125 (126)
91 PRK13461 F0F1 ATP synthase sub 79.4 16 0.00034 24.3 8.1 49 22-70 30-78 (159)
92 CHL00118 atpG ATP synthase CF0 79.3 16 0.00035 24.4 8.7 50 22-71 47-96 (156)
93 COG5509 Uncharacterized small 78.8 4.3 9.2E-05 24.7 3.6 43 3-45 6-49 (65)
94 PRK00736 hypothetical protein; 78.7 11 0.00025 22.4 7.6 50 18-67 2-51 (68)
95 PRK06798 fliD flagellar cappin 78.7 9.1 0.0002 30.1 6.3 26 26-51 377-402 (440)
96 PF10018 Med4: Vitamin-D-recep 78.4 15 0.00031 25.5 6.7 41 22-62 23-63 (188)
97 TIGR01144 ATP_synt_b ATP synth 78.2 16 0.00035 23.8 8.1 49 22-70 20-68 (147)
98 PF06810 Phage_GP20: Phage min 78.1 16 0.00035 24.9 6.8 38 29-66 28-68 (155)
99 PTZ00419 valyl-tRNA synthetase 77.8 14 0.0003 31.7 7.6 51 18-68 926-983 (995)
100 PF11471 Sugarporin_N: Maltopo 76.8 5 0.00011 23.7 3.5 32 20-58 24-55 (60)
101 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.8 15 0.00034 24.0 6.2 43 18-60 88-130 (132)
102 PF05531 NPV_P10: Nucleopolyhe 76.8 15 0.00033 22.8 6.6 50 21-70 11-63 (75)
103 PRK06568 F0F1 ATP synthase sub 76.8 22 0.00047 24.5 7.5 49 23-71 30-78 (154)
104 PF09932 DUF2164: Uncharacteri 76.6 4.9 0.00011 24.7 3.5 36 6-41 39-74 (76)
105 PF08232 Striatin: Striatin fa 76.6 18 0.00039 24.1 6.6 45 23-67 27-71 (134)
106 PRK07737 fliD flagellar cappin 76.5 12 0.00025 30.0 6.4 35 25-59 438-472 (501)
107 TIGR02231 conserved hypothetic 76.5 15 0.00033 28.9 7.0 47 24-70 127-173 (525)
108 PF00430 ATP-synt_B: ATP synth 76.4 11 0.00023 23.8 5.2 48 23-70 25-72 (132)
109 TIGR03185 DNA_S_dndD DNA sulfu 76.4 24 0.00052 28.7 8.3 45 21-65 421-465 (650)
110 PF00261 Tropomyosin: Tropomyo 76.0 23 0.00049 25.3 7.3 45 23-67 115-159 (237)
111 PF10805 DUF2730: Protein of u 75.9 18 0.00038 23.1 7.1 43 25-67 46-90 (106)
112 COG2348 Peptidoglycan interpep 75.8 8.2 0.00018 30.7 5.4 53 14-67 239-291 (418)
113 PRK06664 fliD flagellar hook-a 75.8 12 0.00026 31.1 6.6 25 27-51 599-623 (661)
114 PLN02943 aminoacyl-tRNA ligase 75.6 16 0.00035 31.4 7.4 52 18-69 886-944 (958)
115 PTZ00464 SNF-7-like protein; P 75.4 11 0.00024 27.1 5.6 32 16-47 13-44 (211)
116 PRK02119 hypothetical protein; 75.3 16 0.00034 22.2 7.5 49 19-67 7-55 (73)
117 PRK08724 fliD flagellar cappin 75.2 26 0.00056 29.6 8.3 46 24-69 620-665 (673)
118 PF08946 Osmo_CC: Osmosensory 75.2 7.8 0.00017 22.1 3.8 29 20-48 11-39 (46)
119 PRK15396 murein lipoprotein; P 75.0 14 0.00031 22.9 5.3 40 36-75 26-65 (78)
120 PF11068 YlqD: YlqD protein; 74.9 22 0.00047 23.9 6.6 40 13-52 12-51 (131)
121 PRK04325 hypothetical protein; 74.9 16 0.00035 22.1 7.8 47 23-69 4-50 (74)
122 PRK06664 fliD flagellar hook-a 74.8 24 0.00051 29.5 8.0 47 22-68 601-647 (661)
123 PF06717 DUF1202: Protein of u 74.6 13 0.00029 28.6 6.0 45 24-68 134-178 (308)
124 PF04977 DivIC: Septum formati 74.2 14 0.00031 21.2 5.4 28 34-61 23-50 (80)
125 PRK14471 F0F1 ATP synthase sub 73.9 24 0.00051 23.6 8.0 49 22-70 33-81 (164)
126 PF10481 CENP-F_N: Cenp-F N-te 73.9 31 0.00067 26.6 7.9 52 17-68 70-121 (307)
127 TIGR03321 alt_F1F0_F0_B altern 73.8 30 0.00066 24.8 8.1 49 22-70 30-78 (246)
128 PRK00295 hypothetical protein; 73.3 17 0.00037 21.7 7.8 49 19-67 3-51 (68)
129 PRK14473 F0F1 ATP synthase sub 72.9 25 0.00054 23.5 8.1 49 22-70 33-81 (164)
130 smart00502 BBC B-Box C-termina 72.8 19 0.0004 21.9 7.9 45 18-62 4-48 (127)
131 PRK00295 hypothetical protein; 72.6 18 0.00038 21.6 7.2 44 26-69 3-46 (68)
132 PRK14474 F0F1 ATP synthase sub 72.6 34 0.00074 24.9 8.1 49 22-70 30-78 (250)
133 COG0711 AtpF F0F1-type ATP syn 72.5 27 0.00059 23.7 7.4 48 24-71 33-80 (161)
134 PF11932 DUF3450: Protein of u 72.2 33 0.00072 24.5 8.2 40 23-62 58-97 (251)
135 PF04977 DivIC: Septum formati 71.8 17 0.00036 20.9 5.1 27 39-65 21-47 (80)
136 TIGR03185 DNA_S_dndD DNA sulfu 71.8 28 0.0006 28.3 7.6 47 18-64 425-471 (650)
137 PF14257 DUF4349: Domain of un 71.8 34 0.00073 24.5 8.0 52 16-67 127-187 (262)
138 PLN02381 valyl-tRNA synthetase 71.7 19 0.00041 31.5 7.0 51 18-68 994-1051(1066)
139 PF05377 FlaC_arch: Flagella a 70.8 19 0.00041 21.2 6.0 39 24-62 3-41 (55)
140 PF10458 Val_tRNA-synt_C: Valy 70.5 19 0.00041 21.0 7.3 25 34-58 3-27 (66)
141 KOG0964|consensus 70.4 13 0.00029 33.0 5.7 56 14-69 376-431 (1200)
142 TIGR02977 phageshock_pspA phag 70.3 35 0.00076 24.1 8.0 46 22-68 87-132 (219)
143 PRK14127 cell division protein 70.0 28 0.00061 22.8 6.7 44 24-67 26-69 (109)
144 PRK00846 hypothetical protein; 70.0 24 0.00051 21.9 7.6 54 16-69 8-61 (77)
145 PRK06798 fliD flagellar cappin 70.0 39 0.00084 26.6 7.9 34 20-53 378-411 (440)
146 PRK10884 SH3 domain-containing 69.6 38 0.00083 24.2 8.5 46 20-65 117-162 (206)
147 PRK13182 racA polar chromosome 69.5 15 0.00032 25.8 5.0 35 24-58 81-115 (175)
148 PRK13454 F0F1 ATP synthase sub 68.6 36 0.00077 23.5 8.8 50 21-70 55-104 (181)
149 PF02388 FemAB: FemAB family; 68.1 21 0.00047 27.4 6.0 44 25-68 239-292 (406)
150 PF07798 DUF1640: Protein of u 67.8 36 0.00078 23.3 8.7 64 7-70 37-101 (177)
151 PRK10698 phage shock protein P 67.8 42 0.00091 24.0 7.5 48 20-68 85-132 (222)
152 PRK05431 seryl-tRNA synthetase 67.8 28 0.00061 27.2 6.7 53 14-67 6-60 (425)
153 PF15458 NTR2: Nineteen comple 67.2 38 0.00081 24.8 6.9 49 18-66 205-253 (254)
154 cd00238 ERp29c ERp29 and ERp38 66.7 14 0.00029 23.3 4.0 33 28-60 54-89 (93)
155 PHA02562 46 endonuclease subun 66.7 36 0.00079 26.4 7.1 35 29-63 359-393 (562)
156 PRK09973 putative outer membra 66.4 28 0.0006 22.1 5.3 40 36-75 25-64 (85)
157 PF12999 PRKCSH-like: Glucosid 66.4 44 0.00095 23.7 7.9 51 20-70 124-174 (176)
158 PRK06266 transcription initiat 66.2 5.4 0.00012 27.8 2.2 31 10-40 142-172 (178)
159 COG1730 GIM5 Predicted prefold 66.2 22 0.00047 24.4 5.2 53 22-74 88-140 (145)
160 COG1345 FliD Flagellar capping 66.2 36 0.00078 27.4 7.1 50 19-68 420-469 (483)
161 PRK00736 hypothetical protein; 65.9 26 0.00056 20.9 7.2 43 26-68 3-45 (68)
162 PF14182 YgaB: YgaB-like prote 65.8 29 0.00063 21.8 5.3 12 30-41 16-27 (79)
163 PRK10698 phage shock protein P 65.8 47 0.001 23.8 8.0 47 23-69 94-140 (222)
164 PF09036 Bcr-Abl_Oligo: Bcr-Ab 65.3 32 0.00068 21.6 5.8 35 32-66 30-64 (79)
165 PF13851 GAS: Growth-arrest sp 65.0 46 0.001 23.5 8.1 50 22-71 87-136 (201)
166 PHA01750 hypothetical protein 64.9 31 0.00067 21.4 5.3 35 31-65 38-72 (75)
167 TIGR01843 type_I_hlyD type I s 64.9 53 0.0012 24.1 8.5 36 26-61 135-170 (423)
168 PRK08724 fliD flagellar cappin 64.7 36 0.00078 28.8 7.0 46 25-70 614-663 (673)
169 PF02994 Transposase_22: L1 tr 64.5 43 0.00094 25.7 7.1 40 26-65 142-181 (370)
170 PF12709 Kinetocho_Slk19: Cent 64.5 34 0.00074 21.8 8.5 54 17-70 4-77 (87)
171 PRK04406 hypothetical protein; 64.5 30 0.00065 21.1 7.8 48 23-70 6-53 (75)
172 PRK02119 hypothetical protein; 64.4 29 0.00063 20.9 7.8 47 24-70 5-51 (73)
173 PF07889 DUF1664: Protein of u 63.7 42 0.00091 22.5 8.2 51 16-66 38-92 (126)
174 PRK08453 fliD flagellar cappin 63.1 33 0.00071 28.9 6.5 45 26-70 619-667 (673)
175 PF06160 EzrA: Septation ring 63.0 78 0.0017 25.6 8.5 52 19-70 377-428 (560)
176 PF11559 ADIP: Afadin- and alp 62.8 41 0.00089 22.1 9.0 49 18-66 56-104 (151)
177 PF12718 Tropomyosin_1: Tropom 62.6 44 0.00096 22.4 7.7 39 27-65 27-65 (143)
178 KOG0964|consensus 62.5 55 0.0012 29.4 7.9 60 15-74 322-381 (1200)
179 PF07106 TBPIP: Tat binding pr 62.5 44 0.00096 22.4 7.0 49 21-69 79-136 (169)
180 TIGR01843 type_I_hlyD type I s 62.3 60 0.0013 23.9 7.9 46 21-66 137-182 (423)
181 PRK10803 tol-pal system protei 62.0 41 0.00089 24.6 6.3 41 25-65 58-98 (263)
182 PF04012 PspA_IM30: PspA/IM30 61.0 53 0.0011 22.8 7.4 35 34-68 97-131 (221)
183 PTZ00454 26S protease regulato 60.8 45 0.00098 25.8 6.6 42 20-61 21-62 (398)
184 smart00338 BRLZ basic region l 60.8 29 0.00064 19.8 6.2 46 21-70 16-61 (65)
185 PF05103 DivIVA: DivIVA protei 60.7 7.8 0.00017 24.5 2.1 38 25-62 22-59 (131)
186 PF04949 Transcrip_act: Transc 60.6 57 0.0012 23.0 7.8 43 21-63 84-126 (159)
187 PF09766 FimP: Fms-interacting 60.0 65 0.0014 24.6 7.3 50 16-65 103-152 (355)
188 PRK05771 V-type ATP synthase s 59.9 46 0.001 27.0 6.8 45 18-62 83-127 (646)
189 PRK00846 hypothetical protein; 59.8 39 0.00085 20.9 7.9 47 24-70 9-55 (77)
190 TIGR00414 serS seryl-tRNA synt 59.6 53 0.0011 25.6 6.8 54 14-67 6-62 (418)
191 PF10473 CENP-F_leu_zip: Leuci 59.4 54 0.0012 22.3 7.8 46 23-68 54-99 (140)
192 PF03670 UPF0184: Uncharacteri 59.1 43 0.00094 21.2 6.9 48 23-70 28-75 (83)
193 COG3352 FlaC Putative archaeal 59.1 54 0.0012 23.1 6.2 40 25-64 69-108 (157)
194 PF12958 DUF3847: Protein of u 59.0 33 0.00072 21.7 4.7 32 30-61 3-34 (86)
195 PF04816 DUF633: Family of unk 58.7 52 0.0011 23.3 6.2 51 6-65 150-200 (205)
196 PF12325 TMF_TATA_bd: TATA ele 58.7 51 0.0011 21.8 6.8 19 33-51 21-39 (120)
197 PRK06569 F0F1 ATP synthase sub 58.6 58 0.0013 22.5 7.4 48 22-69 35-82 (155)
198 PF02994 Transposase_22: L1 tr 58.4 79 0.0017 24.3 7.5 43 21-63 144-186 (370)
199 PRK02793 phi X174 lysis protei 58.4 38 0.00083 20.3 7.8 47 24-70 4-50 (72)
200 PF13870 DUF4201: Domain of un 58.4 55 0.0012 22.1 8.1 43 22-64 78-120 (177)
201 PF05524 PEP-utilisers_N: PEP- 58.3 12 0.00027 23.6 2.7 47 10-59 12-59 (123)
202 smart00435 TOPEUc DNA Topoisom 58.2 66 0.0014 25.5 7.2 34 15-48 271-304 (391)
203 PF10186 Atg14: UV radiation r 58.0 63 0.0014 22.7 8.3 51 16-66 58-108 (302)
204 PF06156 DUF972: Protein of un 57.4 50 0.0011 21.4 7.8 54 16-69 3-56 (107)
205 COG5460 Uncharacterized conser 57.1 16 0.00035 23.1 3.0 36 9-44 45-80 (82)
206 PF06160 EzrA: Septation ring 57.1 88 0.0019 25.3 7.9 50 21-70 101-150 (560)
207 COG1579 Zn-ribbon protein, pos 56.8 69 0.0015 23.7 6.7 26 28-53 52-77 (239)
208 TIGR02894 DNA_bind_RsfA transc 56.7 51 0.0011 23.2 5.7 35 35-69 111-145 (161)
209 KOG0996|consensus 56.7 47 0.001 30.1 6.6 60 6-66 893-952 (1293)
210 PRK13729 conjugal transfer pil 56.6 94 0.002 25.3 7.9 54 18-71 66-119 (475)
211 PF05600 DUF773: Protein of un 56.2 56 0.0012 26.4 6.6 48 23-70 119-166 (507)
212 PHA02562 46 endonuclease subun 55.8 95 0.0021 24.1 8.2 28 20-47 298-325 (562)
213 PF14425 Imm3: Immunity protei 55.5 55 0.0012 21.8 5.5 33 1-33 44-78 (117)
214 PRK03992 proteasome-activating 55.5 69 0.0015 24.4 6.8 43 20-62 7-49 (389)
215 PHA02537 M terminase endonucle 55.2 23 0.0005 25.9 4.0 44 4-47 169-227 (230)
216 PF06210 DUF1003: Protein of u 54.9 56 0.0012 21.2 7.3 52 13-66 53-104 (108)
217 COG1345 FliD Flagellar capping 54.8 35 0.00076 27.5 5.2 48 24-71 418-469 (483)
218 PRK14160 heat shock protein Gr 54.8 80 0.0017 22.9 7.6 38 29-66 55-92 (211)
219 PF08614 ATG16: Autophagy prot 54.8 68 0.0015 22.1 7.2 38 26-63 121-158 (194)
220 COG4942 Membrane-bound metallo 54.8 1.1E+02 0.0024 24.5 8.1 37 26-62 50-86 (420)
221 PRK04778 septation ring format 54.7 1.1E+02 0.0024 24.6 8.4 51 19-69 381-431 (569)
222 PF07047 OPA3: Optic atrophy 3 54.4 46 0.00099 22.0 5.1 20 3-22 81-100 (134)
223 PF06818 Fez1: Fez1; InterPro 54.1 82 0.0018 22.8 6.7 19 14-32 14-32 (202)
224 PF14193 DUF4315: Domain of un 54.0 52 0.0011 20.5 5.1 29 38-66 4-32 (83)
225 KOG1103|consensus 53.7 77 0.0017 25.7 6.9 47 22-68 246-292 (561)
226 PRK09866 hypothetical protein; 53.7 79 0.0017 27.2 7.3 56 5-67 409-464 (741)
227 PF05667 DUF812: Protein of un 53.7 88 0.0019 25.9 7.5 37 27-63 341-377 (594)
228 PRK01156 chromosome segregatio 53.3 93 0.002 26.0 7.6 32 27-58 687-718 (895)
229 PF07106 TBPIP: Tat binding pr 53.2 49 0.0011 22.2 5.1 24 29-52 80-103 (169)
230 COG2900 SlyX Uncharacterized p 53.1 53 0.0011 20.3 7.3 44 18-68 5-48 (72)
231 PF12718 Tropomyosin_1: Tropom 53.0 67 0.0015 21.5 8.2 41 29-69 22-62 (143)
232 PRK13428 F0F1 ATP synthase sub 52.8 1.1E+02 0.0024 24.0 8.1 49 22-70 26-74 (445)
233 COG1842 PspA Phage shock prote 52.8 87 0.0019 22.7 7.8 47 22-68 93-139 (225)
234 PF13815 Dzip-like_N: Iguana/D 52.7 60 0.0013 20.8 6.1 31 36-66 81-111 (118)
235 PF12329 TMF_DNA_bd: TATA elem 52.0 51 0.0011 19.8 7.6 38 33-70 31-68 (74)
236 PF13874 Nup54: Nucleoporin co 51.4 69 0.0015 21.2 7.9 51 19-69 42-92 (141)
237 PF04012 PspA_IM30: PspA/IM30 51.3 79 0.0017 21.9 8.5 36 29-64 99-134 (221)
238 PRK05771 V-type ATP synthase s 51.3 1.3E+02 0.0029 24.4 8.7 40 17-56 211-250 (646)
239 PTZ00454 26S protease regulato 51.1 87 0.0019 24.3 6.8 49 23-71 17-65 (398)
240 PF03962 Mnd1: Mnd1 family; I 51.0 83 0.0018 22.0 8.2 32 21-52 62-93 (188)
241 COG1729 Uncharacterized protei 50.9 68 0.0015 24.0 5.9 47 21-68 56-102 (262)
242 PF02403 Seryl_tRNA_N: Seryl-t 50.8 35 0.00077 21.1 3.9 18 25-42 40-57 (108)
243 COG1675 TFA1 Transcription ini 50.7 15 0.00033 25.9 2.4 34 10-43 138-171 (176)
244 PF04859 DUF641: Plant protein 50.1 77 0.0017 21.4 6.1 40 33-72 85-124 (131)
245 PF03961 DUF342: Protein of un 50.0 1.2E+02 0.0026 23.5 8.1 21 21-41 341-361 (451)
246 KOG2264|consensus 49.5 1.3E+02 0.0028 26.0 7.8 41 26-66 98-138 (907)
247 TIGR00606 rad50 rad50. This fa 49.3 99 0.0021 27.4 7.5 45 22-66 882-926 (1311)
248 PRK10803 tol-pal system protei 49.3 1E+02 0.0022 22.5 7.5 44 27-70 39-89 (263)
249 PRK14900 valS valyl-tRNA synth 49.3 1E+02 0.0022 27.1 7.4 32 18-49 839-870 (1052)
250 KOG1760|consensus 49.1 66 0.0014 22.0 5.2 33 19-51 86-118 (131)
251 PF04849 HAP1_N: HAP1 N-termin 49.0 92 0.002 24.0 6.5 45 25-69 210-254 (306)
252 PF05278 PEARLI-4: Arabidopsis 48.9 1.2E+02 0.0025 23.0 7.4 27 36-62 215-241 (269)
253 PRK04863 mukB cell division pr 48.9 1.3E+02 0.0029 27.6 8.3 29 35-63 383-411 (1486)
254 PF15188 CCDC-167: Coiled-coil 48.7 40 0.00088 21.3 3.9 50 19-68 10-62 (85)
255 PF10146 zf-C4H2: Zinc finger- 48.6 1E+02 0.0023 22.4 8.0 50 19-68 44-93 (230)
256 PF04518 Effector_1: Effector 48.5 60 0.0013 25.6 5.6 46 10-55 189-234 (379)
257 KOG1962|consensus 48.5 1.1E+02 0.0023 22.5 6.9 34 29-62 159-192 (216)
258 PRK14162 heat shock protein Gr 48.5 70 0.0015 22.8 5.5 24 40-63 44-67 (194)
259 TIGR01242 26Sp45 26S proteasom 48.5 77 0.0017 23.6 6.0 28 40-67 11-38 (364)
260 PHA02675 ORF104 fusion protein 48.4 72 0.0016 20.5 6.5 62 3-66 21-82 (90)
261 TIGR02894 DNA_bind_RsfA transc 48.4 94 0.002 21.9 7.2 36 33-68 102-137 (161)
262 cd04776 HTH_GnyR Helix-Turn-He 48.1 72 0.0016 20.4 6.2 34 26-59 78-111 (118)
263 COG5415 Predicted integral mem 48.1 50 0.0011 24.7 4.8 33 34-66 14-46 (251)
264 PF10211 Ax_dynein_light: Axon 48.1 93 0.002 21.7 8.2 38 23-60 122-159 (189)
265 PF15619 Lebercilin: Ciliary p 48.0 83 0.0018 22.2 5.8 40 17-57 115-154 (194)
266 TIGR02977 phageshock_pspA phag 48.0 96 0.0021 21.8 8.5 51 17-67 95-145 (219)
267 cd04776 HTH_GnyR Helix-Turn-He 47.5 74 0.0016 20.4 6.0 35 22-56 81-115 (118)
268 PF12777 MT: Microtubule-bindi 47.3 53 0.0012 24.7 5.0 36 30-65 244-279 (344)
269 PF08172 CASP_C: CASP C termin 47.1 1.1E+02 0.0025 22.4 6.8 41 30-70 81-121 (248)
270 PF08614 ATG16: Autophagy prot 46.9 94 0.002 21.4 8.8 45 23-67 111-155 (194)
271 PF14712 Snapin_Pallidin: Snap 46.9 63 0.0014 19.4 6.2 65 6-70 8-85 (92)
272 PF10359 Fmp27_WPPW: RNA pol I 46.8 1.1E+02 0.0023 24.3 6.8 23 25-47 167-189 (475)
273 cd04769 HTH_MerR2 Helix-Turn-H 46.3 74 0.0016 20.1 4.9 16 40-55 91-106 (116)
274 KOG0980|consensus 46.1 1.5E+02 0.0032 26.4 7.9 53 18-70 463-515 (980)
275 PRK12765 flagellar capping pro 45.9 95 0.0021 25.5 6.5 28 26-53 530-557 (595)
276 PRK12765 flagellar capping pro 45.8 1.4E+02 0.003 24.6 7.4 48 19-66 530-577 (595)
277 PF10168 Nup88: Nuclear pore c 45.7 1.9E+02 0.0041 24.5 8.6 38 20-57 557-594 (717)
278 TIGR02209 ftsL_broad cell divi 45.7 62 0.0013 19.0 5.7 28 35-62 31-58 (85)
279 PF10241 KxDL: Uncharacterized 45.6 71 0.0015 19.7 7.8 49 19-67 34-82 (88)
280 PF12128 DUF3584: Protein of u 45.6 1.2E+02 0.0026 26.7 7.4 47 22-68 601-647 (1201)
281 KOG1962|consensus 45.6 76 0.0016 23.3 5.4 39 26-64 163-201 (216)
282 PRK09039 hypothetical protein; 45.6 1.1E+02 0.0023 23.3 6.4 26 34-59 143-168 (343)
283 PF11101 DUF2884: Protein of u 45.4 1.1E+02 0.0024 21.9 7.5 63 7-69 153-216 (229)
284 PF09766 FimP: Fms-interacting 45.4 1.4E+02 0.003 22.9 7.3 46 25-71 99-144 (355)
285 PF07888 CALCOCO1: Calcium bin 45.2 1.8E+02 0.0038 24.2 7.9 46 23-68 257-302 (546)
286 PF13600 DUF4140: N-terminal d 45.2 71 0.0015 19.5 4.9 20 40-59 75-94 (104)
287 PF06305 DUF1049: Protein of u 45.0 25 0.00053 19.9 2.3 17 36-52 49-65 (68)
288 KOG0250|consensus 44.8 1.3E+02 0.0029 26.9 7.5 19 40-58 406-424 (1074)
289 PF04799 Fzo_mitofusin: fzo-li 44.7 1.1E+02 0.0024 21.6 7.7 45 18-66 117-161 (171)
290 COG0172 SerS Seryl-tRNA synthe 44.6 1.6E+02 0.0035 23.6 7.4 54 14-67 6-61 (429)
291 PF05478 Prominin: Prominin; 44.6 1.8E+02 0.0038 24.6 8.0 60 10-69 218-280 (806)
292 PF04728 LPP: Lipoprotein leuc 44.5 65 0.0014 18.9 6.9 40 28-67 3-42 (56)
293 COG1422 Predicted membrane pro 44.4 1.1E+02 0.0023 22.4 5.9 20 37-56 74-93 (201)
294 PF05701 WEMBL: Weak chloropla 44.2 1.7E+02 0.0036 23.5 7.7 48 15-66 286-333 (522)
295 PF05278 PEARLI-4: Arabidopsis 44.2 1.4E+02 0.003 22.6 8.3 48 21-68 193-240 (269)
296 PF03357 Snf7: Snf7; InterPro 44.1 82 0.0018 20.3 5.0 32 19-50 6-37 (171)
297 TIGR01069 mutS2 MutS2 family p 44.0 2E+02 0.0044 24.4 8.5 8 20-27 514-521 (771)
298 PF10267 Tmemb_cc2: Predicted 43.9 85 0.0018 24.8 5.8 32 25-62 287-318 (395)
299 KOG2189|consensus 43.9 57 0.0012 28.4 5.1 41 24-64 59-114 (829)
300 PF07749 ERp29: Endoplasmic re 43.8 25 0.00054 22.0 2.4 23 23-45 50-73 (95)
301 TIGR00998 8a0101 efflux pump m 43.8 1.2E+02 0.0026 21.8 7.5 51 11-61 67-120 (334)
302 TIGR03017 EpsF chain length de 43.6 1.3E+02 0.0028 22.8 6.6 44 10-53 153-196 (444)
303 PF08647 BRE1: BRE1 E3 ubiquit 43.6 80 0.0017 19.7 5.3 43 24-66 27-69 (96)
304 KOG3478|consensus 43.4 1E+02 0.0022 20.8 7.7 52 23-74 64-115 (120)
305 KOG2909|consensus 43.3 90 0.002 24.8 5.8 42 24-65 117-158 (381)
306 PF04678 DUF607: Protein of un 43.2 1.1E+02 0.0023 21.1 7.0 34 21-54 57-90 (180)
307 COG3166 PilN Tfp pilus assembl 43.2 1.2E+02 0.0027 21.8 6.1 42 22-63 49-90 (206)
308 PF13015 PRKCSH_1: Glucosidase 42.3 40 0.00086 23.1 3.3 23 35-57 3-25 (154)
309 PF08286 Spc24: Spc24 subunit 42.2 8.4 0.00018 24.8 0.0 41 27-67 5-45 (118)
310 KOG3584|consensus 42.2 65 0.0014 25.1 4.8 44 15-62 296-339 (348)
311 TIGR03007 pepcterm_ChnLen poly 42.0 1.6E+02 0.0035 22.7 7.6 42 14-55 147-188 (498)
312 KOG0250|consensus 41.9 1.8E+02 0.0039 26.2 7.8 41 24-64 397-437 (1074)
313 PRK04863 mukB cell division pr 41.7 2E+02 0.0044 26.5 8.3 34 31-64 372-405 (1486)
314 PF08826 DMPK_coil: DMPK coile 41.6 75 0.0016 18.8 7.1 27 36-62 33-59 (61)
315 PF03904 DUF334: Domain of unk 41.4 1.5E+02 0.0032 22.1 6.6 46 23-68 45-90 (230)
316 KOG1029|consensus 41.4 1.8E+02 0.004 25.9 7.7 51 18-68 539-589 (1118)
317 PF05529 Bap31: B-cell recepto 41.2 99 0.0021 21.1 5.2 38 31-68 150-187 (192)
318 PF06810 Phage_GP20: Phage min 41.0 1.1E+02 0.0025 20.7 8.0 38 22-59 28-68 (155)
319 PRK08453 fliD flagellar cappin 40.9 1.6E+02 0.0034 25.0 7.1 50 20-69 620-669 (673)
320 TIGR00606 rad50 rad50. This fa 40.8 2.1E+02 0.0045 25.5 8.1 53 15-67 882-934 (1311)
321 PRK00888 ftsB cell division pr 40.8 96 0.0021 19.8 5.2 24 40-63 39-62 (105)
322 PF05103 DivIVA: DivIVA protei 40.5 28 0.00061 21.9 2.3 46 20-65 24-69 (131)
323 smart00787 Spc7 Spc7 kinetocho 40.5 1.6E+02 0.0035 22.3 7.9 33 34-66 224-256 (312)
324 PF04568 IATP: Mitochondrial A 40.4 1E+02 0.0022 19.9 5.8 32 34-65 68-99 (100)
325 PF01025 GrpE: GrpE; InterPro 40.3 49 0.0011 21.8 3.5 36 23-58 13-48 (165)
326 TIGR01242 26Sp45 26S proteasom 40.3 90 0.0019 23.2 5.2 35 28-62 6-40 (364)
327 PLN02678 seryl-tRNA synthetase 39.9 1.7E+02 0.0036 23.4 6.9 51 17-67 13-65 (448)
328 PF13815 Dzip-like_N: Iguana/D 39.7 1E+02 0.0022 19.7 6.0 38 19-56 78-115 (118)
329 smart00503 SynN Syntaxin N-ter 39.3 88 0.0019 19.0 8.2 31 15-45 44-74 (117)
330 COG1293 Predicted RNA-binding 39.3 2.1E+02 0.0046 23.3 8.0 37 29-65 287-323 (564)
331 PF10498 IFT57: Intra-flagella 39.2 1.8E+02 0.0039 22.5 8.3 47 16-62 247-293 (359)
332 PF09763 Sec3_C: Exocyst compl 39.1 1.6E+02 0.0035 24.2 6.9 47 19-65 28-74 (701)
333 COG5127 Vacuolar H+-ATPase V1 38.9 94 0.002 24.5 5.2 42 25-66 116-157 (383)
334 PRK14148 heat shock protein Gr 38.8 1.4E+02 0.0031 21.2 6.0 35 28-62 40-74 (195)
335 TIGR00422 valS valyl-tRNA synt 38.6 34 0.00074 28.8 3.0 39 8-46 803-841 (861)
336 PF08700 Vps51: Vps51/Vps67; 38.5 83 0.0018 18.4 4.5 28 41-68 57-84 (87)
337 PF10234 Cluap1: Clusterin-ass 38.4 1.7E+02 0.0037 22.0 8.6 47 19-65 160-206 (267)
338 PLN02320 seryl-tRNA synthetase 38.2 1.2E+02 0.0026 24.7 5.9 53 14-66 71-124 (502)
339 PF07544 Med9: RNA polymerase 38.0 94 0.002 18.9 7.2 29 12-40 19-47 (83)
340 COG1196 Smc Chromosome segrega 38.0 2.4E+02 0.0051 24.8 8.0 7 32-38 401-407 (1163)
341 PF14818 DUF4482: Domain of un 37.9 1.2E+02 0.0025 20.9 5.1 30 37-66 22-51 (141)
342 PF15463 ECM11: Extracellular 37.7 1.2E+02 0.0026 20.0 6.0 43 18-63 91-133 (139)
343 PF13851 GAS: Growth-arrest sp 37.7 1E+02 0.0023 21.7 5.0 32 31-62 51-82 (201)
344 PF10211 Ax_dynein_light: Axon 37.6 1.4E+02 0.0031 20.8 7.0 36 32-67 124-159 (189)
345 cd07646 I-BAR_IMD_IRSp53 Inver 37.5 1.7E+02 0.0037 21.7 6.9 45 20-64 95-143 (232)
346 KOG3119|consensus 37.4 1.3E+02 0.0029 22.1 5.7 34 25-58 219-252 (269)
347 KOG3647|consensus 37.4 2E+02 0.0043 22.4 7.3 47 21-67 112-158 (338)
348 PRK00409 recombination and DNA 37.3 2.6E+02 0.0056 23.8 8.4 37 23-59 529-565 (782)
349 PF14257 DUF4349: Domain of un 37.2 99 0.0021 22.0 4.9 23 25-47 166-188 (262)
350 PF09006 Surfac_D-trimer: Lung 37.1 82 0.0018 17.9 4.2 20 46-65 3-22 (46)
351 PF10805 DUF2730: Protein of u 37.0 1.1E+02 0.0024 19.4 7.6 24 40-63 47-72 (106)
352 KOG1029|consensus 36.7 2.1E+02 0.0046 25.5 7.4 48 21-68 472-519 (1118)
353 PRK09841 cryptic autophosphory 36.7 1.6E+02 0.0036 24.3 6.6 46 10-55 249-294 (726)
354 TIGR02231 conserved hypothetic 36.3 1.7E+02 0.0036 23.1 6.4 46 18-63 128-173 (525)
355 PF01025 GrpE: GrpE; InterPro 36.2 50 0.0011 21.7 3.1 27 36-62 19-45 (165)
356 PF11945 WASH_WAHD: WAHD domai 36.0 1.3E+02 0.0029 22.7 5.6 51 20-70 17-71 (297)
357 PF04899 MbeD_MobD: MbeD/MobD 36.0 1E+02 0.0022 18.7 6.2 37 21-57 28-64 (70)
358 PF11853 DUF3373: Protein of u 35.9 37 0.0008 27.7 2.7 21 40-60 36-56 (489)
359 KOG0161|consensus 35.8 2.5E+02 0.0054 26.9 8.1 57 7-66 1044-1100(1930)
360 PF03980 Nnf1: Nnf1 ; InterPr 35.4 1.1E+02 0.0024 19.0 4.4 32 31-62 76-107 (109)
361 PF09726 Macoilin: Transmembra 35.0 1.2E+02 0.0025 25.7 5.5 41 9-49 610-650 (697)
362 KOG0972|consensus 34.9 2.3E+02 0.0049 22.4 7.2 47 23-69 254-300 (384)
363 COG2433 Uncharacterized conser 34.8 2E+02 0.0043 24.5 6.8 20 43-62 437-456 (652)
364 PF12017 Tnp_P_element: Transp 34.4 1.4E+02 0.0031 21.8 5.4 23 29-51 19-41 (236)
365 PF09730 BicD: Microtubule-ass 34.3 1.4E+02 0.003 25.6 5.9 39 35-73 265-303 (717)
366 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.2 1.3E+02 0.0029 19.5 6.9 29 34-62 9-37 (132)
367 KOG3335|consensus 34.2 1.5E+02 0.0033 21.2 5.4 63 5-68 77-139 (181)
368 KOG2264|consensus 34.2 2.2E+02 0.0047 24.6 6.9 47 24-70 103-149 (907)
369 PF15556 Zwint: ZW10 interacto 34.1 2E+02 0.0043 21.5 7.3 50 17-66 137-186 (252)
370 PRK11519 tyrosine kinase; Prov 34.0 1.9E+02 0.0041 24.0 6.6 48 7-54 246-293 (719)
371 PF13863 DUF4200: Domain of un 33.8 1.2E+02 0.0026 18.9 7.9 30 33-62 79-108 (126)
372 PF10552 ORF6C: ORF6C domain; 33.4 1.3E+02 0.0028 19.1 4.8 39 20-58 7-45 (116)
373 PF15397 DUF4618: Domain of un 33.4 2.1E+02 0.0045 21.5 6.7 14 19-32 65-78 (258)
374 KOG0981|consensus 33.3 2.3E+02 0.005 24.3 6.9 54 15-68 630-695 (759)
375 PF14584 DUF4446: Protein of u 33.2 1.6E+02 0.0034 20.1 5.5 23 19-41 44-66 (151)
376 KOG1655|consensus 33.2 1.3E+02 0.0029 22.2 5.0 35 34-68 18-52 (218)
377 PF05531 NPV_P10: Nucleopolyhe 33.0 1.2E+02 0.0027 18.7 5.0 23 40-62 40-62 (75)
378 KOG2391|consensus 33.0 2.5E+02 0.0054 22.3 7.3 28 13-40 210-237 (365)
379 PF04156 IncA: IncA protein; 32.9 1.5E+02 0.0033 19.8 8.8 28 21-48 123-150 (191)
380 PF10186 Atg14: UV radiation r 32.6 1.8E+02 0.0038 20.4 8.2 29 35-63 63-91 (302)
381 PRK04778 septation ring format 32.5 2.7E+02 0.0058 22.5 7.8 48 23-70 107-154 (569)
382 PF09726 Macoilin: Transmembra 32.4 2E+02 0.0043 24.3 6.5 45 19-63 536-580 (697)
383 COG2433 Uncharacterized conser 32.4 3.1E+02 0.0066 23.4 7.5 35 28-62 429-463 (652)
384 PF11336 DUF3138: Protein of u 32.2 70 0.0015 26.3 3.7 26 42-67 25-50 (514)
385 PF11853 DUF3373: Protein of u 32.0 53 0.0011 26.8 3.0 21 43-63 32-52 (489)
386 KOG4552|consensus 32.0 1.5E+02 0.0032 22.3 5.1 31 38-68 70-100 (272)
387 cd04769 HTH_MerR2 Helix-Turn-H 31.9 1.3E+02 0.0029 18.8 5.5 31 22-52 80-110 (116)
388 TIGR01834 PHA_synth_III_E poly 31.7 95 0.002 24.0 4.2 30 34-63 288-317 (320)
389 PRK13169 DNA replication intia 31.6 1.5E+02 0.0033 19.4 7.9 53 16-68 3-55 (110)
390 PF13514 AAA_27: AAA domain 31.2 3.6E+02 0.0078 23.5 8.8 65 6-70 769-836 (1111)
391 PF15458 NTR2: Nineteen comple 31.1 1.9E+02 0.0042 21.1 5.7 21 37-57 231-251 (254)
392 PF15070 GOLGA2L5: Putative go 30.9 1.6E+02 0.0035 24.5 5.7 45 23-67 24-68 (617)
393 cd01109 HTH_YyaN Helix-Turn-He 30.2 1.4E+02 0.0031 18.6 5.3 21 27-47 78-98 (113)
394 cd01107 HTH_BmrR Helix-Turn-He 30.2 1.4E+02 0.0031 18.5 5.3 12 21-32 75-86 (108)
395 KOG0978|consensus 30.1 3.4E+02 0.0073 23.3 7.5 47 23-69 561-607 (698)
396 PRK00409 recombination and DNA 30.1 3.5E+02 0.0075 23.0 8.5 45 19-63 518-562 (782)
397 TIGR01069 mutS2 MutS2 family p 30.0 3.5E+02 0.0075 23.0 8.4 39 19-57 520-558 (771)
398 PF06009 Laminin_II: Laminin D 29.7 18 0.00038 23.9 0.0 53 19-71 50-105 (138)
399 PLN02943 aminoacyl-tRNA ligase 29.7 84 0.0018 27.2 4.0 27 33-59 887-913 (958)
400 cd00179 SynN Syntaxin N-termin 29.7 1.5E+02 0.0033 18.8 8.4 30 15-44 42-71 (151)
401 COG1293 Predicted RNA-binding 29.6 3.1E+02 0.0068 22.4 8.3 64 6-69 271-334 (564)
402 cd07682 F-BAR_srGAP2 The F-BAR 29.3 2.5E+02 0.0055 21.2 7.2 55 13-70 76-140 (263)
403 PF11285 DUF3086: Protein of u 29.3 1.6E+02 0.0035 22.5 5.0 32 20-51 3-34 (283)
404 KOG4643|consensus 29.2 4.2E+02 0.0091 24.2 8.0 47 20-66 407-453 (1195)
405 PRK10920 putative uroporphyrin 29.2 2.9E+02 0.0062 21.8 8.0 38 31-68 88-125 (390)
406 PF10481 CENP-F_N: Cenp-F N-te 29.2 1.8E+02 0.004 22.4 5.4 38 29-66 96-133 (307)
407 PTZ00419 valyl-tRNA synthetase 28.8 89 0.0019 27.0 4.0 27 33-59 927-953 (995)
408 PF04340 DUF484: Protein of un 28.7 1.3E+02 0.0028 21.0 4.3 27 21-47 40-66 (225)
409 PHA02096 hypothetical protein 28.7 46 0.001 21.5 1.8 37 3-39 19-55 (103)
410 PRK05729 valS valyl-tRNA synth 28.7 91 0.002 26.5 4.0 27 33-59 809-835 (874)
411 PF00038 Filament: Intermediat 28.6 2.3E+02 0.0049 20.4 9.0 22 35-56 216-237 (312)
412 PF03954 Lectin_N: Hepatic lec 28.5 1.8E+02 0.0039 20.0 4.8 53 16-68 61-113 (138)
413 PF05565 Sipho_Gp157: Siphovir 28.3 1.9E+02 0.0042 19.5 8.3 52 19-70 38-89 (162)
414 TIGR01837 PHA_granule_1 poly(h 28.2 97 0.0021 20.1 3.3 17 36-52 97-113 (118)
415 PRK02463 OxaA-like protein pre 28.1 1.3E+02 0.0028 22.8 4.4 50 12-63 77-128 (307)
416 PRK14139 heat shock protein Gr 28.0 2.2E+02 0.0048 20.1 5.7 8 40-47 44-51 (185)
417 TIGR01834 PHA_synth_III_E poly 28.0 97 0.0021 23.9 3.7 26 24-49 292-317 (320)
418 PF03357 Snf7: Snf7; InterPro 27.9 1.2E+02 0.0027 19.5 3.8 34 21-54 1-34 (171)
419 KOG2911|consensus 27.8 1E+02 0.0022 25.0 3.9 28 18-45 237-264 (439)
420 KOG0963|consensus 27.7 3.5E+02 0.0075 23.0 7.1 48 5-52 91-138 (629)
421 PF15456 Uds1: Up-regulated Du 27.7 1.9E+02 0.0041 19.2 6.5 39 19-57 79-117 (124)
422 KOG3313|consensus 27.6 1.2E+02 0.0027 21.9 4.0 51 5-62 111-162 (187)
423 cd01106 HTH_TipAL-Mta Helix-Tu 27.5 1.5E+02 0.0033 18.1 4.7 18 21-38 73-90 (103)
424 PF13015 PRKCSH_1: Glucosidase 27.3 1E+02 0.0022 21.1 3.4 26 41-66 2-27 (154)
425 PF00170 bZIP_1: bZIP transcri 27.2 1.3E+02 0.0027 17.0 7.9 33 37-69 28-60 (64)
426 PF10393 Matrilin_ccoil: Trime 27.0 1.3E+02 0.0027 17.0 4.6 16 46-61 27-42 (47)
427 TIGR00373 conserved hypothetic 27.0 34 0.00074 23.2 1.0 23 11-33 135-157 (158)
428 PF02185 HR1: Hr1 repeat; Int 27.0 1.3E+02 0.0029 17.3 4.3 25 39-63 37-61 (70)
429 PF07278 DUF1441: Protein of u 26.8 54 0.0012 22.7 2.0 42 4-45 35-85 (152)
430 PRK10963 hypothetical protein; 26.7 1.4E+02 0.003 21.1 4.2 22 48-69 43-64 (223)
431 KOG2077|consensus 26.6 4.2E+02 0.0092 22.9 7.6 51 15-65 323-373 (832)
432 PHA03386 P10 fibrous body prot 26.5 1.9E+02 0.004 18.8 4.4 21 21-41 12-32 (94)
433 PF11365 DUF3166: Protein of u 26.5 1.8E+02 0.004 18.7 5.8 43 23-65 3-45 (96)
434 PRK10378 inactive ferrous ion 26.3 3.2E+02 0.007 21.5 7.1 36 5-41 300-335 (375)
435 PF08702 Fib_alpha: Fibrinogen 26.2 2.1E+02 0.0046 19.3 7.6 47 16-62 24-70 (146)
436 PF05667 DUF812: Protein of un 26.1 3.8E+02 0.0083 22.2 7.8 39 25-63 332-370 (594)
437 KOG2391|consensus 26.0 3.4E+02 0.0073 21.6 8.3 44 25-68 236-279 (365)
438 TIGR01010 BexC_CtrB_KpsE polys 25.9 2.4E+02 0.0051 21.0 5.5 27 27-53 169-195 (362)
439 PRK00106 hypothetical protein; 25.6 3.8E+02 0.0083 22.0 7.8 52 17-68 97-148 (535)
440 PF12761 End3: Actin cytoskele 25.6 1.6E+02 0.0036 21.2 4.4 29 33-61 165-193 (195)
441 TIGR01005 eps_transp_fam exopo 25.5 3.8E+02 0.0083 22.0 8.6 41 8-48 174-214 (754)
442 TIGR00999 8a0102 Membrane Fusi 25.4 2.3E+02 0.005 19.4 7.1 44 27-70 29-75 (265)
443 smart00502 BBC B-Box C-termina 25.2 1.6E+02 0.0035 17.6 7.6 17 44-60 52-68 (127)
444 COG3352 FlaC Putative archaeal 25.2 2.3E+02 0.0051 19.9 4.9 41 23-63 46-86 (157)
445 PF12128 DUF3584: Protein of u 25.2 4.9E+02 0.011 23.1 7.9 39 25-63 611-649 (1201)
446 COG3879 Uncharacterized protei 25.0 3E+02 0.0065 20.6 6.6 26 23-48 59-84 (247)
447 TIGR01063 gyrA DNA gyrase, A s 24.8 2.8E+02 0.006 23.7 6.2 14 16-29 392-405 (800)
448 PF13094 CENP-Q: CENP-Q, a CEN 24.8 2.2E+02 0.0047 18.9 7.8 43 25-67 38-80 (160)
449 PRK01203 prefoldin subunit alp 24.6 2.3E+02 0.0049 19.1 5.9 43 13-55 79-121 (130)
450 KOG0971|consensus 24.6 3.7E+02 0.0079 24.5 6.9 47 25-71 400-446 (1243)
451 PF03962 Mnd1: Mnd1 family; I 24.4 2.5E+02 0.0055 19.5 7.8 29 19-47 67-95 (188)
452 KOG4343|consensus 24.3 4.5E+02 0.0097 22.4 7.5 63 3-71 276-338 (655)
453 PTZ00464 SNF-7-like protein; P 24.3 2E+02 0.0043 20.7 4.6 27 19-45 23-49 (211)
454 PF05405 Mt_ATP-synt_B: Mitoch 24.3 2.2E+02 0.0048 18.8 5.1 41 6-47 30-71 (163)
455 cd04766 HTH_HspR Helix-Turn-He 24.2 1.7E+02 0.0037 17.5 3.7 20 47-66 70-89 (91)
456 PF01031 Dynamin_M: Dynamin ce 24.2 2.8E+02 0.0061 20.0 5.6 57 15-71 74-131 (295)
457 COG1566 EmrA Multidrug resista 24.0 2.6E+02 0.0057 21.6 5.5 57 10-66 77-137 (352)
458 PRK11239 hypothetical protein; 24.0 1.7E+02 0.0037 21.5 4.2 25 40-64 188-212 (215)
459 PF14817 HAUS5: HAUS augmin-li 24.0 4.4E+02 0.0095 22.2 7.4 40 25-64 83-122 (632)
460 KOG4657|consensus 23.8 3.2E+02 0.0069 20.5 7.2 49 15-63 63-114 (246)
461 cd04790 HTH_Cfa-like_unk Helix 23.8 2.4E+02 0.0053 19.2 5.2 32 20-51 73-104 (172)
462 PF10368 YkyA: Putative cell-w 23.7 2.1E+02 0.0046 20.2 4.6 31 13-43 64-94 (204)
463 PF10079 DUF2317: Uncharacteri 23.7 4.1E+02 0.0088 21.7 7.4 61 10-70 419-480 (542)
464 PF04521 Viral_P18: ssRNA posi 23.7 2.4E+02 0.0052 19.0 5.4 28 39-66 76-103 (120)
465 PF14966 DNA_repr_REX1B: DNA r 23.7 2E+02 0.0043 18.1 5.1 54 6-63 28-81 (97)
466 PF11945 WASH_WAHD: WAHD domai 23.6 3.3E+02 0.0072 20.6 7.5 34 23-63 38-71 (297)
467 PF13166 AAA_13: AAA domain 23.6 4E+02 0.0086 21.5 8.1 22 38-59 420-441 (712)
468 PHA02629 A-type inclusion body 23.5 1.7E+02 0.0036 17.3 3.4 24 27-50 32-55 (61)
469 PF15369 KIAA1328: Uncharacter 23.5 3.6E+02 0.0079 21.1 6.6 32 36-67 34-65 (328)
470 KOG0972|consensus 23.5 3.8E+02 0.0081 21.2 7.5 33 33-65 257-289 (384)
471 KOG2577|consensus 23.3 2.3E+02 0.0051 22.3 5.1 36 26-61 142-177 (354)
472 PF11336 DUF3138: Protein of u 23.1 1.4E+02 0.0031 24.6 4.0 25 35-59 25-49 (514)
473 TIGR03689 pup_AAA proteasome A 23.1 2.4E+02 0.0052 23.0 5.3 38 35-72 8-45 (512)
474 PRK10780 periplasmic chaperone 22.9 2.4E+02 0.0053 18.8 8.3 26 20-45 42-67 (165)
475 PRK14153 heat shock protein Gr 22.8 2.4E+02 0.0051 20.2 4.7 33 30-62 35-67 (194)
476 KOG0995|consensus 22.7 4.7E+02 0.01 22.1 7.2 25 30-54 296-320 (581)
477 KOG4674|consensus 22.7 2.6E+02 0.0056 26.7 5.9 45 15-59 945-989 (1822)
478 PF12269 zf-CpG_bind_C: CpG bi 22.6 3.3E+02 0.0071 20.2 6.2 42 22-63 23-64 (236)
479 PF01519 DUF16: Protein of unk 22.5 2.3E+02 0.0051 18.5 5.4 48 19-66 28-77 (102)
480 PF07957 DUF3294: Protein of u 22.4 2.6E+02 0.0056 20.6 4.9 43 33-75 1-44 (216)
481 PF12958 DUF3847: Protein of u 22.4 2.1E+02 0.0046 18.0 5.9 38 19-56 6-43 (86)
482 KOG3684|consensus 22.3 2.2E+02 0.0047 23.5 4.9 37 18-61 431-467 (489)
483 PRK00106 hypothetical protein; 22.3 4.5E+02 0.0097 21.6 8.6 56 19-74 106-161 (535)
484 KOG4083|consensus 22.2 3.1E+02 0.0068 19.9 6.8 48 18-65 91-139 (192)
485 PF03961 DUF342: Protein of un 22.2 3.8E+02 0.0082 20.8 8.2 55 18-72 331-398 (451)
486 TIGR00634 recN DNA repair prot 22.2 4.2E+02 0.009 21.2 7.4 52 23-74 324-378 (563)
487 PRK08476 F0F1 ATP synthase sub 22.0 2.4E+02 0.0053 18.5 8.1 51 22-72 32-82 (141)
488 KOG4797|consensus 22.0 2.6E+02 0.0056 18.8 4.5 50 26-75 65-119 (123)
489 KOG0946|consensus 21.9 5.8E+02 0.013 22.8 7.8 57 14-74 647-703 (970)
490 PF14988 DUF4515: Domain of un 21.9 3E+02 0.0066 19.5 6.8 47 15-68 27-73 (206)
491 PF12709 Kinetocho_Slk19: Cent 21.9 2.2E+02 0.0049 18.0 5.9 37 34-70 48-84 (87)
492 PF10168 Nup88: Nuclear pore c 21.9 2.2E+02 0.0047 24.1 5.0 52 24-75 582-633 (717)
493 COG5570 Uncharacterized small 21.8 1.6E+02 0.0034 17.4 3.0 24 20-43 32-55 (57)
494 TIGR00414 serS seryl-tRNA synt 21.8 2.7E+02 0.0058 21.7 5.2 53 4-58 54-106 (418)
495 PLN02381 valyl-tRNA synthetase 21.8 1.3E+02 0.0028 26.5 3.8 26 33-58 995-1020(1066)
496 KOG4643|consensus 21.7 6.3E+02 0.014 23.2 7.8 74 2-75 156-231 (1195)
497 PF04111 APG6: Autophagy prote 21.7 3.6E+02 0.0077 20.3 8.5 53 18-70 61-113 (314)
498 PF06008 Laminin_I: Laminin Do 21.7 3.1E+02 0.0067 19.6 7.0 66 9-74 12-77 (264)
499 cd03196 GST_C_5 GST_C family, 21.6 1.5E+02 0.0032 18.2 3.1 39 1-39 16-59 (115)
500 PF00509 Hemagglutinin: Haemag 21.5 33 0.00072 28.4 0.2 58 15-72 376-433 (550)
No 1
>KOG3478|consensus
Probab=99.93 E-value=3.9e-26 Score=151.36 Aligned_cols=68 Identities=49% Similarity=0.750 Sum_probs=65.1
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+|++|||++||||||||++||++||.+|||||++||+|++..|.+++++.++.++.++++|+.+|.+.
T Consensus 50 ~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~ 117 (120)
T KOG3478|consen 50 EDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAA 117 (120)
T ss_pred ccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 69999999999999999999999999999999999999999999999999999999999998887653
No 2
>PRK09343 prefoldin subunit beta; Provisional
Probab=99.76 E-value=2.8e-18 Score=113.32 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=52.1
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
+|++|||+||||||++|+++|+.+|++|+|| ++.+|++++++.+.+++++.++|.++++++++.
T Consensus 52 ~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~-------ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 52 DDTPIYKIVGNLLVKVDKTKVEKELKERKEL-------LELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred CcchhHHHhhHHHhhccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999 455566666666666677777777777776653
No 3
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1e-16 Score=107.01 Aligned_cols=65 Identities=31% Similarity=0.465 Sum_probs=62.5
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKM 73 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~ 73 (75)
+|+.|||.||++||+.++++|..+|++|+|+ ++.+++++++|+++++++|.+||+.++.+++++.
T Consensus 51 eD~~vYk~VG~llvk~~k~~~~~eL~er~E~-------Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~ 115 (119)
T COG1382 51 EDAPVYKKVGNLLVKVSKEEAVDELEERKET-------LELRIKTLEKQEEKLQERLEELQSEIQKALGDAA 115 (119)
T ss_pred cccHHHHHhhhHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6889999999999999999999999999999 9999999999999999999999999999998754
No 4
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.68 E-value=1.9e-16 Score=102.42 Aligned_cols=62 Identities=35% Similarity=0.532 Sum_probs=53.5
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+|++|||+||||||++|+++|..+|++|++| ++..++.++++.+.+++++.++|++++++++
T Consensus 48 ~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~-------ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 48 DDTPVYKSVGNLLVKTDKEEAIQELKEKKET-------LELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred CcchhHHHhchhhheecHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999 6777777777777777777788888877764
No 5
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.57 E-value=1.2e-14 Score=93.04 Aligned_cols=61 Identities=39% Similarity=0.609 Sum_probs=59.0
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
||+.||++||||||+.|.++|..+|++|+++|.++|++++..++++++++..++.+|.++|
T Consensus 44 ~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 44 DDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred CcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999999999887
No 6
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.18 E-value=3.5e-11 Score=75.10 Aligned_cols=60 Identities=32% Similarity=0.562 Sum_probs=53.3
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
+|+.||+.||++||++|.+++...++++++++..+|++++..++.++++++.++..|..+
T Consensus 43 ~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 43 DDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp TT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999988888888888777643
No 7
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=98.74 E-value=1.7e-08 Score=64.80 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=51.9
Q ss_pred CchhhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 2 KDGEVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 2 ~da~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++..||..|| +++|..+.++|...+++|+++++++++.++..+..+..+...++..+..++
T Consensus 67 ~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 67 DDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred CCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788999999 999999999999999999999887777777777777777777777666554
No 8
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=97.97 E-value=2.3e-05 Score=51.80 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=40.8
Q ss_pred hhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 9 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 9 lvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+-++++|..+.++|...+++|+++++..++.++..+..+.++.+.+...+.+++.+
T Consensus 82 lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 82 LGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34499999999999999999999966666666666666666555555555555543
No 9
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=96.98 E-value=0.002 Score=41.78 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=39.7
Q ss_pred hhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 4 GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 4 a~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
..+..+-+.+.|.-+.++|..-+++|+++ ++..+..+++....+++.+..++..+++
T Consensus 70 ~v~v~iG~g~~vE~~~~eA~~~l~~r~~~-------l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 70 KVLVDLGTGYYVEKDLEEAIEFLDKKIEE-------LTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred EEEEEcCCCEEEEecHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778999999999999999999999 4445555555555555555555544443
No 10
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=96.86 E-value=0.0041 Score=39.48 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=44.8
Q ss_pred hhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 5 EVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 5 ~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
+||=.+| .+.|.-+.++|..-+++|++.++..++++...+..+..+...+...+.+++.
T Consensus 60 ~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 60 KVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444 5788999999999999999997777777777777777777777777666653
No 11
>KOG4098|consensus
Probab=96.80 E-value=0.0066 Score=41.72 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=40.8
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 54 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~ 54 (75)
++.++|++||.|||..+--++.=.|..-.|+|..=|+.+-.++....+.+++.
T Consensus 60 p~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkf 112 (140)
T KOG4098|consen 60 PTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKF 112 (140)
T ss_pred hhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999996665555555555544444443
No 12
>KOG3501|consensus
Probab=96.61 E-value=0.02 Score=38.07 Aligned_cols=63 Identities=11% Similarity=0.341 Sum_probs=52.6
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
||..+|..+|...+.+|+.-..+.++...-- .+..|+.++++-.=+...+.+....++++++.
T Consensus 48 de~~~Y~svgrmF~l~dk~a~~s~leak~k~-------see~IeaLqkkK~YlEk~v~eaE~nLrellqs 110 (114)
T KOG3501|consen 48 DEKAVYTSVGRMFMLSDKAAVRSHLEAKMKS-------SEEKIEALQKKKTYLEKTVSEAEQNLRELLQS 110 (114)
T ss_pred hHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999888877665555 88888888888888888888888888887664
No 13
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.017 Score=39.69 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=40.7
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 12 PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 12 pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+=|..|.++|.+-+++|++.|++-+..+...|..+......+...+.+++++..
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999997777666666666666666666666666665443
No 14
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=96.48 E-value=0.012 Score=38.07 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=32.4
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14231 11 GPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHREN 57 (75)
Q Consensus 11 GpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~ 57 (75)
+.++|.-+.++|+.-+++|++.++..++.++..+..+.++...+...
T Consensus 76 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 76 SGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999995555555555555444444444433
No 15
>PRK14011 prefoldin subunit alpha; Provisional
Probab=96.48 E-value=0.025 Score=38.64 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=41.1
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 12 PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 12 pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
.+.|..+.++|..-+++|++++++-++.+...|..+......++..+..-
T Consensus 79 Gy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 79 DIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred CeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999988888888888888888777777654433
No 16
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=95.85 E-value=0.062 Score=31.75 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
|++-|++++.+++..+.+++++.+.+++.+.++...++..+.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677789999999999999999999999999999998887654
No 17
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=95.54 E-value=0.11 Score=34.17 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
++++.++|++.-++.++..++.++.++..+++++..++..++++.+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999998876654
No 18
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=94.43 E-value=0.09 Score=34.31 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=31.8
Q ss_pred hhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 9 LIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 9 lvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
++| +-++..+.+.+..-|+.|++| +...+.+++++++....++
T Consensus 55 ilG~~~~i~Rt~~Qvv~~l~RRiDY-------V~~Ni~tleKql~~aE~kl 98 (99)
T PF13758_consen 55 ILGEGQGITRTREQVVDVLSRRIDY-------VQQNIETLEKQLEAAENKL 98 (99)
T ss_pred HhCCCCCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc
Confidence 344 357788999999999999999 6666666666666655443
No 19
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=93.66 E-value=0.54 Score=29.70 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+..++++=++.++..++.++..++.++++.+.+.+++.+++.++.+++
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677778889999999999999999999999999999999988764
No 20
>KOG3048|consensus
Probab=92.61 E-value=1.2 Score=31.12 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=42.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
-|..|.++|+.=-++|+||++++++.++.-++.-......+. +-+|++.|.+++.
T Consensus 94 yVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~---~v~q~Kv~~al~a 148 (153)
T KOG3048|consen 94 YVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVM---DVLQAKVQTALTA 148 (153)
T ss_pred EEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467899999999999999999999999988877666555554 4455666555444
No 21
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.59 E-value=1.5 Score=33.01 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=43.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.++.+....++.+-.--|.+||++++..+.++..+....++++.++++++.+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888888888888888888888887776544
No 22
>PF14282 FlxA: FlxA-like protein
Probab=92.47 E-value=1.8 Score=27.79 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDD----TIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~----~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+.-...|.++|.-+..+|+.+.. -.+....+...++.+|..|+.++++...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888877766 3345566777777777777777776554
No 23
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=91.54 E-value=0.34 Score=28.88 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=31.4
Q ss_pred cchhhhccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14231 11 GPILVKQEMEE-AKQNVKKRIDYISAELKRHDDTIATLDT 49 (75)
Q Consensus 11 GpvLvkqd~~e-a~~~v~kRlE~I~~Eikr~e~~i~~~e~ 49 (75)
|+.++.+|++- ...+++.||..++.||.|++..+..-..
T Consensus 10 ~~~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 10 SGHEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred CccccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888765 5789999999999999999987765443
No 24
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.63 E-value=1.8 Score=27.12 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=48.2
Q ss_pred chhhhccHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 12 PILVKQEMEEAKQNVKKR--IDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 12 pvLvkqd~~ea~~~v~kR--lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.=+|..+.+....++.+| ....-.+|-.++.....+..+.+.++.+-..+..++.+...
T Consensus 4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 346788999999999999 56777888888888888888888888888888887776554
No 25
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=90.59 E-value=1.4 Score=27.78 Aligned_cols=45 Identities=20% Similarity=0.481 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.++++=++|+..-++.++.++.++++....++.++..+...+++.
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677889888888888888888888888888888888887764
No 26
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=90.56 E-value=1.8 Score=27.78 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.++++-++|+..-++.++..++.+++....+++++..++..++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6889999996666666666666666666666666666665554
No 27
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.53 E-value=3.5 Score=29.57 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.++-+..+..+++-...|+..++...+.+++.....+.++..|++++.....
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888888888888888888888877765543
No 28
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=89.81 E-value=2.1 Score=26.13 Aligned_cols=41 Identities=12% Similarity=0.314 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+=++.|+..++.++..++.++++.+.+.+++.+++..+...
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888899999999999999999998888887654
No 29
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=89.57 E-value=0.99 Score=25.82 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=11.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 50 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q 50 (75)
|..||+.=+.+-.+.|+.=|.-++.+|++++++
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 566777766666666555555566666555554
No 30
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=89.55 E-value=2.3 Score=25.14 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14231 37 LKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA 75 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~~ 75 (75)
|.+|...+.+|..+...+...+..++..++.+...+.||
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666666666666666665555553
No 31
>KOG1760|consensus
Probab=89.42 E-value=2 Score=29.35 Aligned_cols=51 Identities=6% Similarity=0.368 Sum_probs=34.5
Q ss_pred hhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14231 5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHR 55 (75)
Q Consensus 5 ~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~ 55 (75)
-|==.||.|.+.-..+....-+++-.+...++|..++....+....+..++
T Consensus 65 ~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK 115 (131)
T KOG1760|consen 65 DIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELK 115 (131)
T ss_pred ccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344468999999999999999999999944444444444444444444433
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=89.04 E-value=3.3 Score=24.64 Aligned_cols=51 Identities=12% Similarity=0.331 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.++-...++-|+-|...-|..+...+...++++.+++..+..|..++..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466778889999997777777777777777777777777777777666654
No 33
>PRK01203 prefoldin subunit alpha; Provisional
Probab=88.15 E-value=1.7 Score=29.44 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+++++|++..++.++.-+.....+.+.+.+.+..|-
T Consensus 86 e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 86 ERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888888899999999988888888888876
No 34
>COG5293 Predicted ATPase [General function prediction only]
Probab=88.07 E-value=3 Score=34.24 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=48.8
Q ss_pred hhHHhhc---chhhhccHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 5 EVYKLIG---PILVKQEMEEAKQ----NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 5 ~VYKlvG---pvLvkqd~~ea~~----~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++|--|| |=+|++|.+++.. -++.|.+|...||.+++.-++.+......+-++.++.-
T Consensus 305 ~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l 369 (591)
T COG5293 305 VLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGL 369 (591)
T ss_pred HHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777 6689999999864 68999999999999999999999988888877776654
No 35
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=87.98 E-value=3.7 Score=26.33 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKM 73 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~ 73 (75)
++++=++| ++.+++.+++..+.+.+.+..++.++.......+
T Consensus 84 ~~~eA~~~-------l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 84 DLEEAIEF-------LDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred cHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667 9999999999999999999999999888776543
No 36
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=2.6 Score=28.22 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=30.7
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+..++++-.+.++.|+.. |+.+.+.++++.+.++..|.++.
T Consensus 71 ~~~eL~er~E~Le~ri~t-------LekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 71 AVDELEERKETLELRIKT-------LEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788889999999999 67777777777777777666554
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.81 E-value=6.7 Score=28.11 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
++++..+.+.|..-+...+...+..+.+++.+-..+++++..++++...
T Consensus 109 l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 109 LNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555566666666666666666666665544
No 38
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=86.68 E-value=1.2 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHR 55 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~ 55 (75)
|+.++..+|.++++++..++
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999988765
No 39
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=86.10 E-value=5.9 Score=31.13 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+..++..|..+|++++.++...++...+.-..++.+-++++
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mn 451 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLN 451 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444433333334444444
No 40
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=86.08 E-value=5.3 Score=28.41 Aligned_cols=34 Identities=26% Similarity=0.540 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+..|...+.+++++++.+|.+++.+++..+.++.
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~ 224 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEERLESKEERLR 224 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544444433
No 41
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=86.01 E-value=5.3 Score=23.72 Aligned_cols=43 Identities=9% Similarity=0.208 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
...++.|++.+...+..+|.+....+.+...+..+|.++....
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666666666666666665543
No 42
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=85.85 E-value=7.8 Score=25.46 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-++|.+.+...+......+......+..+.+...+..+...
T Consensus 29 i~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~ 77 (156)
T PRK05759 29 IMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIE 77 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999888888888888877776654
No 43
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=85.75 E-value=5.5 Score=23.65 Aligned_cols=46 Identities=20% Similarity=0.554 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
..+.+|+.-|+..++..+.++..++.........+..+..++...-
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888888888888888888877776543
No 44
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=85.44 E-value=7.7 Score=25.07 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=45.9
Q ss_pred hhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 9 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 9 lvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+++-+|.+. ....+++|-+.|.+.+...+......+.........+.+.+.+......
T Consensus 21 ll~~~l~~p----i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~ 78 (140)
T PRK07353 21 ILNALFYKP----VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIA 78 (140)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554 6788999999999999999999888888888888888888877665554
No 45
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=85.24 E-value=8.5 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
..-+++|-+.|.+.+...+....+.+......+..+.+...+.++....
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~ 96 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVET 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999888888888888777766553
No 46
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.23 E-value=8.6 Score=25.40 Aligned_cols=65 Identities=12% Similarity=0.275 Sum_probs=43.8
Q ss_pred hhhHHhhcchhhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 4 GEVYKLIGPILVKQEM-EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 4 a~VYKlvGpvLvkqd~-~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..|...|-.+|...+. -+...++..++--+.+++.++...+..++.+.+.+..++...+.....+
T Consensus 34 ~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 34 VRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555443 3566778888888888888877777777777777777776666555544
No 47
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=85.09 E-value=6.7 Score=30.16 Aligned_cols=50 Identities=8% Similarity=0.313 Sum_probs=35.7
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHH
Q psy14231 13 ILVKQEMEEAKQNVKKRIDYISAELKRHDDT----------IATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 13 vLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~----------i~~~e~q~e~~~~~l~~lQ 62 (75)
++..-|.++...++.++++-++.+|..++.. +++++.|.+...+++.+++
T Consensus 234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999888875 4444444444444444444
No 48
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=84.98 E-value=9.4 Score=25.65 Aligned_cols=52 Identities=13% Similarity=0.378 Sum_probs=30.6
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
-..+..++..+..||+-...-+..+....+.+.++...++..+..+...+..
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445666666666766655555555555555555555566555555554443
No 49
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.97 E-value=1.9 Score=32.42 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=43.2
Q ss_pred hhHHhhcchhhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 5 EVYKLIGPILVKQEME-EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 5 ~VYKlvGpvLvkqd~~-ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
.||+-|.|.--+-... ........++.-+..++..++..+..++.+.+....+...|+.++.......
T Consensus 211 ~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 211 EVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677777743322211 1123455666777778888888888888888777777777777666554433
No 50
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=84.84 E-value=4.4 Score=28.84 Aligned_cols=43 Identities=5% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.....++..++..|...|++++.++...+.+....-..++.+-
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i 234 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLI 234 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888887666555554444444333
No 51
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=84.75 E-value=10 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
....+++|-++|.+.|...+......+......+.+|.+...+.+.....
T Consensus 44 I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~ 93 (174)
T PRK07352 44 LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRAD 93 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998888888888888888888777766543
No 52
>PHA01750 hypothetical protein
Probab=84.53 E-value=4.6 Score=25.00 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=27.9
Q ss_pred hhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQN-VKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 15 vkqd~~ea~~~-v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+||.+-+|..+ |++-++....||..+..++..+++|...++.++.
T Consensus 28 IKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 28 IKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 67777666654 4556666666666666666666666555555543
No 53
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=84.51 E-value=10 Score=28.41 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
-..+|..++..+++-.+..+..+..--+.++.++++.+.+|+..|+-++..++
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666666666677777777777777777776665544
No 54
>PRK14011 prefoldin subunit alpha; Provisional
Probab=84.48 E-value=8.9 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..++++=++|++.-++-++.....+...++++...+..++..++..+.
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~ 130 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQ 130 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889988888888888888888888888888888866554433
No 55
>KOG1655|consensus
Probab=84.32 E-value=2.3 Score=31.20 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=31.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 54 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~ 54 (75)
+.++.+|...|++|-+.|+.=|++++..+..+..|+.+.
T Consensus 14 ~psL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 14 PPSLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred ChhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 568899999999999997777777777777766666543
No 56
>PF14282 FlxA: FlxA-like protein
Probab=84.31 E-value=6.8 Score=25.08 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDT----KQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~----q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
.+.+++-|...|+.+...|+.+.. -.+..+.++..||.+++...+.
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQ 66 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQ 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666665 2245566666666666655544
No 57
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=84.28 E-value=5.5 Score=27.17 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
..|++-.++.|..|++|+..+.+..+++.+.++.-|.
T Consensus 49 Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 49 IKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777777766654
No 58
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=83.92 E-value=5.9 Score=31.14 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT----KLQQQFQQEQA 70 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~----~lQ~~~q~~~~ 70 (75)
--+..|.+.+.+.|++++.++..++.+++...+++. .|..-+.++.+
T Consensus 402 G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns 452 (462)
T PRK08032 402 GIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNS 452 (462)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999988777766555544 44444444433
No 59
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=83.84 E-value=13 Score=26.34 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
...-+++|-++|.+.+...+......+......+.++.+...+.++....
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~ 122 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ 122 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999988888888888888888877776665543
No 60
>PRK09039 hypothetical protein; Validated
Probab=83.43 E-value=9.9 Score=28.91 Aligned_cols=48 Identities=8% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
.-++..|+-++..|.+++..|...+.+....+.+|..|+..++.+++.
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777777777777777788888888888777654
No 61
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=83.40 E-value=7.3 Score=23.16 Aligned_cols=48 Identities=8% Similarity=0.291 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
-|+..|.+.+.-..+.-..++.++++.+.+...+..++..|..++.+.
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366677777776666666677777777777777777777777766554
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.21 E-value=14 Score=27.38 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+.-.....++|+..++.||..+...+..++++.+.++..+..+...+....
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888888888888888888888888888888887766544
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.08 E-value=6.8 Score=31.24 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.++|++-|.+||.+++..|....++...+.+.|.++...+..
T Consensus 36 ~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~ 77 (420)
T COG4942 36 DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS 77 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 338888888888888888877777777777777766665543
No 64
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=83.00 E-value=12 Score=25.31 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
....+++|-+.|.+.|...+..-...+.........|.+...+.+.....
T Consensus 35 i~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~ 84 (167)
T PRK14475 35 LAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAA 84 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998888888888877766553
No 65
>PRK04406 hypothetical protein; Provisional
Probab=82.92 E-value=8.5 Score=23.52 Aligned_cols=49 Identities=6% Similarity=0.226 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.++-..+++-|+-|-..=|..+...+...++++..++.++..|-.++..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666777777744444444444444444444444444444444433
No 66
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=82.68 E-value=3.7 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.453 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIA 45 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~ 45 (75)
|.+.-...+.+.++.+.++|.+++.++.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566777777777777777777665
No 67
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.59 E-value=15 Score=26.19 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.++..|.++-...+.+++..+..++..+...+.+...++..+-.++
T Consensus 186 keaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 186 KEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555554444
No 68
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=82.34 E-value=13 Score=25.41 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
...-+++|-++|.+.+...+......+......+..+.+...+.+.....
T Consensus 49 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~ 98 (184)
T CHL00019 49 LSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVN 98 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999888888888888888888887777665543
No 69
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=82.29 E-value=5.6 Score=24.97 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+++-|.+||.+...+|..++.++..+..+..++-
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777889999999999999988888777766554
No 70
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=82.23 E-value=5.7 Score=25.39 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=28.0
Q ss_pred CCchhhHHhhcchhhhccHHHHHHHHHHHHHHHHH
Q psy14231 1 MKDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISA 35 (75)
Q Consensus 1 ~~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~ 35 (75)
++|..+++++|.| -+.|.-+...+|.+|+.-++.
T Consensus 6 ~sn~EL~kmaG~v-~~k~~~dy~~Ei~KR~~~m~~ 39 (93)
T PF06518_consen 6 KSNEELIKMAGKV-DPKDVPDYKMEIHKRLKKMKE 39 (93)
T ss_dssp S-HHHHHHTTTTS--GGGHHHHHHHHHHHHHHS-H
T ss_pred cChHHHHHHHCCC-CHHHHHHHHHHHHHHHHhCCH
Confidence 4678899999999 899999999999999997555
No 71
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=82.15 E-value=9.9 Score=23.75 Aligned_cols=43 Identities=16% Similarity=0.424 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+++=++|++.-++.++..+..++.+...++.++..++..+++.
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778555556666666666666665555555555555543
No 72
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=82.10 E-value=13 Score=25.19 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
...-+++|-+.|.+++...+......+......+.++.+.+.+.+.....
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 90 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAE 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998888888888888888888777766553
No 73
>PRK09343 prefoldin subunit beta; Provisional
Probab=82.05 E-value=8.4 Score=25.17 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=29.9
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+.+..+-...++.|+.- ++++...++++...++..|.++.++
T Consensus 73 ~~~l~~r~E~ie~~ik~-------lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 73 EKELKERKELLELRSRT-------LEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777777766 7777777777777777777776654
No 74
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=81.98 E-value=14 Score=25.30 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
..-+++|-+.|.+.|...+..-...+......+.++.+.+.+.++....
T Consensus 53 ~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 53 GGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998888888888888888887777665543
No 75
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=81.08 E-value=11 Score=25.91 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 32 YISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 32 ~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
-.+.||+.++..+++.+...+.++++...++.+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666555556666665555543
No 76
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=80.91 E-value=6.6 Score=31.81 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.++++++++-++.|+.-+....++++.+++.+..++..|+.++.
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888887778888889999999999999988873
No 77
>PRK02793 phi X174 lysis protein; Provisional
Probab=80.73 E-value=10 Score=22.91 Aligned_cols=49 Identities=12% Similarity=0.307 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.++-...++-|+-|-..=|..+...+...++++..++.++..|-.++..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777777744444444444444444444444444444444433
No 78
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.58 E-value=16 Score=24.99 Aligned_cols=43 Identities=9% Similarity=0.333 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
++..|++....|+.-.+.....+..+.+..+..+..|+.++..
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~ 63 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEE 63 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433
No 79
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.54 E-value=14 Score=27.76 Aligned_cols=40 Identities=23% Similarity=0.470 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+.++.+-|+-+-+.|..+-..+.+++++....+..+.+++
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 80
>PRK07737 fliD flagellar capping protein; Validated
Probab=80.48 E-value=12 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
..+.+++.-|..+|++++.++...+++..+.-..|+.+-.+++
T Consensus 444 ~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~mn 486 (501)
T PRK07737 444 FAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQKAN 486 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777776665554433333333333333
No 81
>PRK04325 hypothetical protein; Provisional
Probab=80.47 E-value=10 Score=22.94 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
++.++-..+|+-|+-|-..=|..+...+..-++++..++.++.-|-.++..+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888555555555555555555555555555555555443
No 82
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.28 E-value=9.9 Score=22.55 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
++.||+-++.-+--.+..|..+..-.-..+..|..|+.+++.+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555443
No 83
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=80.24 E-value=11 Score=31.79 Aligned_cols=53 Identities=13% Similarity=0.332 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLD-------TKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e-------~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
|.+.-...+.++++.+.+||++++.++..-. .-.+..++++.+++.++.....
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~ 867 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKE 867 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778899999999999999999998633 4556666666666666655443
No 84
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.22 E-value=8.9 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=14.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
++.+++.++...+.+.+++..++.++....
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 85
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.88 E-value=16 Score=27.51 Aligned_cols=50 Identities=12% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.++....+.+.++-+..|.+++...+..++++.+.+..++..++.+....
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777777777777777777777665543
No 86
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=79.84 E-value=16 Score=24.75 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
...-+++|-+.|.+.+...+......+........++.+...+.+.....
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~ 92 (175)
T PRK14472 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIRE 92 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999998888888888888888888777766543
No 87
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=79.62 E-value=15 Score=24.37 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
...-+++|-++|.+.|...+......+......+.+|.+...+.+.....
T Consensus 27 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~ 76 (159)
T PRK09173 27 IARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAA 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999888888888888888888777766543
No 88
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=79.59 E-value=19 Score=25.51 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=44.1
Q ss_pred HHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 7 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 7 YKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
|=++.-+++| =...-+++|-+.|.+.|...+..-...+.....-...|.+-..+.+....
T Consensus 67 ~~lL~k~~~~----pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 67 YLFMSRVILP----RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 25677899999999999998888888888887777777777776666544
No 89
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=79.53 E-value=17 Score=24.77 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-+.|.+++...+......+.....-+.++.+.+.+.+....
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 91 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILE 91 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999998888888888888888877777766554
No 90
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=79.47 E-value=15 Score=24.92 Aligned_cols=59 Identities=14% Similarity=0.303 Sum_probs=41.0
Q ss_pred hcchhhhcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 10 IGPILVKQE-------MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 10 vGpvLvkqd-------~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+||+.|... .+.+...-++-|+...+|-.-+...+-.++.-.+.-++.+.-||.++..+
T Consensus 60 ~~~~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 60 LDPMFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred cccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555554 44455555556666666666688888888888888888888888877653
No 91
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=79.37 E-value=16 Score=24.33 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-++|.+.|...+......+......+..+.+...+......
T Consensus 30 i~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~ 78 (159)
T PRK13461 30 IKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999888888888888888888887777665554
No 92
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=79.33 E-value=16 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
...-+++|-+.|.+.+...+..-...+......+..+.+...+.+.....
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~ 96 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQ 96 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998888888888888888888777665543
No 93
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=78.81 E-value=4.3 Score=24.65 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=27.4
Q ss_pred chhhHHhhcchhhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 3 DGEVYKLIGPILVKQEME-EAKQNVKKRIDYISAELKRHDDTIA 45 (75)
Q Consensus 3 da~VYKlvGpvLvkqd~~-ea~~~v~kRlE~I~~Eikr~e~~i~ 45 (75)
+...-|-.|..+-.-.+. =...+++.||-.+..||.|++..+.
T Consensus 6 ed~~kka~~~~i~~d~LsllsV~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 6 EDAEKKAFGHEIGNDALSLLSVAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred ccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445444322121 2467899999999999999986554
No 94
>PRK00736 hypothetical protein; Provisional
Probab=78.74 E-value=11 Score=22.41 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
|.++-...++-|+-|-..=|..+...+..-++++..++.++..|..++..
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888999955555555555555555555555555555544444
No 95
>PRK06798 fliD flagellar capping protein; Validated
Probab=78.68 E-value=9.1 Score=30.12 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
+..|.+-|...|++++.++.+++.++
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl 402 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQN 402 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555655555555544
No 96
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=78.42 E-value=15 Score=25.52 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
...++..||.-+..|+..++.+++++.+++...+..|..+-
T Consensus 23 ~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 23 EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888887765
No 97
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=78.22 E-value=16 Score=23.77 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-++|.++|...+......+......+..+.+...+.+....
T Consensus 20 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~ 68 (147)
T TIGR01144 20 LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIE 68 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999888888888888888888776665553
No 98
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=78.07 E-value=16 Score=24.92 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDT---KQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~---q~e~~~~~l~~lQ~~~q 66 (75)
-++-.+++|+..+..|++|.+ -.+.++.+|..||++..
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 334445555556666666666 55666666666666554
No 99
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=77.78 E-value=14 Score=31.70 Aligned_cols=51 Identities=12% Similarity=0.270 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLD-------TKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e-------~q~e~~~~~l~~lQ~~~q~~ 68 (75)
|.+.-...+.|+++.+.+||.+++.++..-. ...++.+.++.+++.++...
T Consensus 926 d~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l 983 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQL 983 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778899999999999999999986543 44555555555555555443
No 100
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=76.78 E-value=5 Score=23.68 Aligned_cols=32 Identities=6% Similarity=0.232 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
..+..+|+.|+.- +|.+++..+......+.++
T Consensus 24 ~a~~ltiEqRLa~-------LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 24 QAAPLTIEQRLAA-------LEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred ccccCCHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3445579999999 5555544444444444433
No 101
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.77 E-value=15 Score=23.97 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~ 60 (75)
.++.+......+..-+..||..++.++.++..|-.-+-++|..
T Consensus 88 ~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 88 ELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555566666677777777777777777776666666553
No 102
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=76.77 E-value=15 Score=22.78 Aligned_cols=50 Identities=18% Similarity=0.370 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIAT---LDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~---~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
++..+|+.+.+-+...+..++..+.+ +.++++.+-..+..++.++.....
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888778777666 777888888888888876655443
No 103
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=76.77 E-value=22 Score=24.50 Aligned_cols=49 Identities=8% Similarity=0.065 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
..-+++|-+.|.++|...+..-+..+.-.+.-+..|.+-..+.++.+..
T Consensus 30 ~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~ 78 (154)
T PRK06568 30 LNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEE 78 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999888888888888888888877777766553
No 104
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=76.61 E-value=4.9 Score=24.75 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=31.8
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 41 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e 41 (75)
+-+-+||..--|-..+|..-+..|++-|..++-.+|
T Consensus 39 ~~~elGp~~YNqgv~DA~~~~~~r~~~l~~~ly~lE 74 (76)
T PF09932_consen 39 FIEELGPHFYNQGVQDAQAVLEERMEDLEEELYELE 74 (76)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 347799999999999999999999999888887665
No 105
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=76.58 E-value=18 Score=24.09 Aligned_cols=45 Identities=13% Similarity=0.330 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
++++.-||-|+.||.+..+..-+++.+....+.-.|.+...++..
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 567889999999999999999999999999998888887777654
No 106
>PRK07737 fliD flagellar capping protein; Validated
Probab=76.54 E-value=12 Score=29.95 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
.+..|.+.|..+|++++.++.+++.+++...+++.
T Consensus 438 ~~~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~ry~ 472 (501)
T PRK07737 438 TMTNQQFAIGKDLNQIETQIDRFQDRLKQIEDRYY 472 (501)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999998888877665553
No 107
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.52 E-value=15 Score=28.92 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..+.+-.+|+..++..+...+.+++.+++.+++++..++.++.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46778888999999999999999999999999999999998876654
No 108
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=76.44 E-value=11 Score=23.76 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..-+++|-+.|.+++...+......+.........+.+...+......
T Consensus 25 ~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~ 72 (132)
T PF00430_consen 25 KKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIE 72 (132)
T ss_dssp HHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999988888888888888888888888877666554
No 109
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.35 E-value=24 Score=28.66 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+....+.++++-++.+|..+...+..+..+.+.+.+++..+..++
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555554444
No 110
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=76.03 E-value=23 Score=25.28 Aligned_cols=45 Identities=16% Similarity=0.379 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
...+..|+..+.+++.+.+.+...++.+...+...|..+-..+..
T Consensus 115 ~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 115 YEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 345566666777777776666666666666666666666555544
No 111
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.93 E-value=18 Score=23.12 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRH--DDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~--e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+++.|+.-++.+++-+ ...+.+++-.+..++..+..+..+++.
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3366666666655555 444455555555555555555544443
No 112
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=75.81 E-value=8.2 Score=30.70 Aligned_cols=53 Identities=17% Similarity=0.379 Sum_probs=47.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
|..-|.+|=...++.++..+..|+.|+...+++... .++.+..+..+|+++-.
T Consensus 239 la~l~~~e~~~~l~~~l~~~~~~~~r~~~~l~~~~~-~~k~~~~l~~l~~q~~~ 291 (418)
T COG2348 239 LAYLDLDEYLKKLNQELAKLAAEIERVQEALKESPK-SEKAQNKLNRLQMQLEA 291 (418)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc-hhhhhhhHHHHHHHHHh
Confidence 567799999999999999999999999999998887 88888888888887654
No 113
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=75.79 E-value=12 Score=31.11 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
..|.+.+...|++++.++.+++.++
T Consensus 599 ~~r~~~l~~~i~~l~~~i~~~e~rl 623 (661)
T PRK06664 599 YNKVKGLDERIADNNKKIEEYEKKL 623 (661)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444444
No 114
>PLN02943 aminoacyl-tRNA ligase
Probab=75.57 E-value=16 Score=31.40 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLD-------TKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e-------~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
|.+.-...|+|+++.+++||.+++.++..-. ...++.+.++.+++.++....
T Consensus 886 D~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~ 944 (958)
T PLN02943 886 DISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTK 944 (958)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677899999999999999999987432 445555566666665555443
No 115
>PTZ00464 SNF-7-like protein; Provisional
Probab=75.40 E-value=11 Score=27.09 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=22.7
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~ 47 (75)
+.+..++..++.+|++.+..-|++++..+...
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~a 44 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARINKIDAELMKL 44 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999666555555443333
No 116
>PRK02119 hypothetical protein; Provisional
Probab=75.27 E-value=16 Score=22.15 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.++-..+++-|+-|-..=|..+...+...++++..++.++..|..++..
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777888888855555555555555555555555555555444444
No 117
>PRK08724 fliD flagellar capping protein; Validated
Probab=75.22 E-value=26 Score=29.60 Aligned_cols=46 Identities=7% Similarity=0.178 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
..+++++.-|..++.+++.++..++.+.......++.+-.+++...
T Consensus 620 ~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMnsQ~ 665 (673)
T PRK08724 620 KSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQGQL 665 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666555555555555555555443
No 118
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=75.16 E-value=7.8 Score=22.15 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
.|.-.|++.++|-|..+|..++.+-+.|-
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665544443
No 119
>PRK15396 murein lipoprotein; Provisional
Probab=75.01 E-value=14 Score=22.93 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA 75 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~~ 75 (75)
+++.+...+.++..+...+......+....+.+...+.||
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666666666666665555553
No 120
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=74.94 E-value=22 Score=23.92 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=30.7
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 13 ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 13 vLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
++-+..++++...+...+.-+..|+..++...+.+.....
T Consensus 12 ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 12 IVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp E--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556678999999999999999999888877776665543
No 121
>PRK04325 hypothetical protein; Provisional
Probab=74.89 E-value=16 Score=22.11 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
...++.||+-++.-+-=.|..|.++..-.-..+..|..|+.+++.+.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788887777777777777777777777777777777776553
No 122
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=74.78 E-value=24 Score=29.48 Aligned_cols=47 Identities=6% Similarity=0.190 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
-...+++++.-|...|++++.++...+.+..+.-..++.+-++++..
T Consensus 601 r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsq 647 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQ 647 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999998887777766666666665555543
No 123
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=74.61 E-value=13 Score=28.57 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
++...|+-.|..++.+-...|..|++++..+.+++.-++.++...
T Consensus 134 ~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~y 178 (308)
T PF06717_consen 134 QDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRY 178 (308)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999988877643
No 124
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.25 E-value=14 Score=21.22 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
+.|+..++..+..+..+.+.++.++..|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444
No 125
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=73.95 E-value=24 Score=23.59 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-++|.+++...+..-...+.........+.+...+.+..+.
T Consensus 33 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14471 33 ILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILK 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999988888888888888888877777665544
No 126
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.92 E-value=31 Score=26.56 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+.+-|+-.+++++-+-|..|+.--+..+.-++.|+...+..|..|.+.+...
T Consensus 70 q~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~ 121 (307)
T PF10481_consen 70 QSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRC 121 (307)
T ss_pred hhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999988888777777777777777777777777666543
No 127
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=73.77 E-value=30 Score=24.77 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-+.|.+.|...+......+......+..+.+.+.+.+....
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999888888888888888888777666554
No 128
>PRK00295 hypothetical protein; Provisional
Probab=73.27 E-value=17 Score=21.66 Aligned_cols=49 Identities=10% Similarity=0.229 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.++-...++-|+-|-..=|..+...+...++++..++.++..|..++..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888855555555555555555555555555555444444
No 129
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=72.91 E-value=25 Score=23.46 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-++|.+.|...+..-...+......+..+.+...+.+....
T Consensus 33 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14473 33 VLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVA 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999998888888888888888887777665554
No 130
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=72.76 E-value=19 Score=21.88 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+..+...+..+.+.+..-+..++..+..++.+.+..+..+..--
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f 48 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAF 48 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666665555554433
No 131
>PRK00295 hypothetical protein; Provisional
Probab=72.61 E-value=18 Score=21.58 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
++.|++-++.-+-=.|..|.++..-.-+.+..|..|+.+++.+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665556666666666666666666666666666665543
No 132
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=72.55 E-value=34 Score=24.87 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-+.|.+.|...+......+...+.-+.++.+...+.+..+.
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 78 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMA 78 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999988888887777777777777776665554
No 133
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=72.47 E-value=27 Score=23.66 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
.-+++|-..|..+|...+..-.+.+.-......++.+.+.+.+.....
T Consensus 33 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~ 80 (161)
T COG0711 33 KALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQ 80 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999998888888888888888888776665543
No 134
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.15 E-value=33 Score=24.51 Aligned_cols=40 Identities=5% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
...+.+.++.++...++++..+.+.+++...+..++..+.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443
No 135
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.83 E-value=17 Score=20.93 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 39 RHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 39 r~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.+...+.+++++.+.++.+..+|+.++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333
No 136
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.81 E-value=28 Score=28.29 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
.+.+...++++++.-+..++.++...+..+.++.+.+..++.+++..
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 471 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQ 471 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666555443
No 137
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=71.76 E-value=34 Score=24.46 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=37.4
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIA---------TLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~---------~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
-+|..+....++.|+...+.+.+|+...++ .++.++.+.+.+|+.++.+++.
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888999999999999999887654 3455555666666666655543
No 138
>PLN02381 valyl-tRNA synthetase
Probab=71.73 E-value=19 Score=31.47 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLD-------TKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e-------~q~e~~~~~l~~lQ~~~q~~ 68 (75)
|.+.-...+.++++.+.+||.+++.++..-. .-.++.++++.+++.++...
T Consensus 994 D~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l 1051 (1066)
T PLN02381 994 NAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFF 1051 (1066)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778899999999999999999988633 44455555555555554443
No 139
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.78 E-value=19 Score=21.15 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+++.++.-|++.|..+...++++.+..+++.+.+.++=
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788888888888888888888888888876664
No 140
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=70.45 E-value=19 Score=20.97 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
..|+.|+++.+..++++...+..+|
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555555443
No 141
>KOG0964|consensus
Probab=70.43 E-value=13 Score=33.04 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=44.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
|.||...--=++.++|=.||.+||.++...|.+...++..++..+..+...+....
T Consensus 376 ~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~ 431 (1200)
T KOG0964|consen 376 LAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKL 431 (1200)
T ss_pred HHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444433445678999999999999999999999999999999998887766543
No 142
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=70.27 E-value=35 Score=24.05 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
|+.-+.++.+| ...+.+++..+..+......++..+..|+.++..+
T Consensus 87 Ar~Al~~k~~~-~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 87 ARAALIEKQKA-QELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333 44444555555555555555555555555544443
No 143
>PRK14127 cell division protein GpsB; Provisional
Probab=70.01 E-value=28 Score=22.83 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.+|+.=|+-|..++..+...+..+..+...++.++.+++.+...
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666777777788888888888888888888888888876654
No 144
>PRK00846 hypothetical protein; Provisional
Probab=69.96 E-value=24 Score=21.92 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=31.0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.++.++-...++-|+-|-..=|..+...+...+.++.+++.++.-|-.++..+.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666677788888884444555555555555555555555555555555443
No 145
>PRK06798 fliD flagellar capping protein; Validated
Probab=69.95 E-value=39 Score=26.64 Aligned_cols=34 Identities=9% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
..-...++.|+..|...+++++.++...+....+
T Consensus 378 ~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~ 411 (440)
T PRK06798 378 GERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVD 411 (440)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888888888877554444333
No 146
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.56 E-value=38 Score=24.21 Aligned_cols=46 Identities=4% Similarity=0.131 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
++-...+..+++--+..+..++..-+.+.++...++.++..+..+.
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444433
No 147
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=69.52 E-value=15 Score=25.77 Aligned_cols=35 Identities=9% Similarity=0.215 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
.++..|++.+...+..++.++++++.....+-+.+
T Consensus 81 ~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~v 115 (175)
T PRK13182 81 NISSVDFEQLEAQLNTITRRLDELERQLQQKADDV 115 (175)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35557777777777777777777777766554433
No 148
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.64 E-value=36 Score=23.46 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
=...-+++|-+.|.+.+...+..-...+.........|.+...+.+..+.
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~ 104 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVA 104 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999888888777777777777777776666655444
No 149
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=68.14 E-value=21 Score=27.41 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTK----------QDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q----------~e~~~~~l~~lQ~~~q~~ 68 (75)
|.++.++.+..++..++..+..+..+ ...+.+++..+...+.++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999998885 445555555555555444
No 150
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.82 E-value=36 Score=23.25 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=46.2
Q ss_pred HHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 7 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD-DTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 7 YKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e-~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
......+.-|.|.+.......-.+.-+++|+...+ ..+..+....++++..+..|.++++.-..
T Consensus 37 ~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 37 EKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666688888888888888888888886554 45677777777777777777777765443
No 151
>PRK10698 phage shock protein PspA; Provisional
Probab=67.80 E-value=42 Score=24.01 Aligned_cols=48 Identities=6% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+-|+.-|.++..| ...+..++..+...+...+.++..+..|+.++.++
T Consensus 85 dLAr~AL~~K~~~-~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 85 DLARAALIEKQKL-TDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345544444444 34444445455555555555555555555444443
No 152
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=67.78 E-value=28 Score=27.17 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=37.7
Q ss_pred hhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDY--ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~--I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+++.+.+..+.++.+|- + --.+|-.++.....+..+.+.++.+..++.+++..
T Consensus 6 ~ir~n~~~v~~~l~~R~-~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 6 LIRENPEAVKEALAKRG-FPLDVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHhCHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888883 2 12456667777777777777777777777776654
No 153
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=67.21 E-value=38 Score=24.79 Aligned_cols=49 Identities=10% Similarity=0.299 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++.++...|...+..++.....+..++..+++....+..+-.+||..++
T Consensus 205 ~L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 205 SLSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677778888888888888888888888888888777777777776654
No 154
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=66.75 E-value=14 Score=23.31 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIAT---LDTKQDTHRENLTK 60 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~---~e~q~e~~~~~l~~ 60 (75)
+=-+|+.+|+.|++.-+.. ...+...++.++.=
T Consensus 54 kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~NI 89 (93)
T cd00238 54 KGEDYVEKELARLERLLEKKGLAPEKADELTRRLNI 89 (93)
T ss_pred cchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4568999999999998876 45555555555543
No 155
>PHA02562 46 endonuclease subunit; Provisional
Probab=66.67 E-value=36 Score=26.39 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
+...+++||.+++....+++..+..+..++.++..
T Consensus 359 ~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~ 393 (562)
T PHA02562 359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 156
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=66.44 E-value=28 Score=22.10 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA 75 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~~ 75 (75)
++..+...+..+..+...+...+..++...+.+...+.||
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RA 64 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRA 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666555555543
No 157
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=66.41 E-value=44 Score=23.71 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.+....++++.+.++.=++.....+...+++.+.++.++.+|+.+++...+
T Consensus 124 ~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 124 KEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566677777777777778888888888888888888888888876543
No 158
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=66.24 E-value=5.4 Score=27.81 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=27.1
Q ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNVKKRIDYISAELKRH 40 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~ 40 (75)
=|..|+.-|-.+....+++||+.|++|+...
T Consensus 142 Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~~~ 172 (178)
T PRK06266 142 CGEMLEEYDNSELIKELKEQIKELEEELKLN 172 (178)
T ss_pred CCCCCeecccHHHHHHHHHHHHHHHHHhccc
Confidence 3788999999999999999999998888743
No 159
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=66.23 E-value=22 Score=24.40 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
|..+.++=++||.+.++.++..+.+++..+.++-..+..+++++++..+...+
T Consensus 88 ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 88 AEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999988876644
No 160
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=66.16 E-value=36 Score=27.42 Aligned_cols=50 Identities=14% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.......|++.+..+..+|+-+..++.+.+++....-..+..+-.+++..
T Consensus 420 i~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~~~~~qf~~m~~~~~~m~sq 469 (483)
T COG1345 420 ITGRTDSLNKQIKSLDKDIKSLDKRLEAAEERYKTQFNTLDDMMTQMNSQ 469 (483)
T ss_pred eeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666566555555555554444444444444443
No 161
>PRK00736 hypothetical protein; Provisional
Probab=65.86 E-value=26 Score=20.85 Aligned_cols=43 Identities=9% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
++.|++-++.-+-=.|..|.++..-.-+.+..|..|+.+++.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666555555555555555555555566666655555544
No 162
>PF14182 YgaB: YgaB-like protein
Probab=65.81 E-value=29 Score=21.84 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHD 41 (75)
Q Consensus 30 lE~I~~Eikr~e 41 (75)
+=|+.+||.||.
T Consensus 16 LL~LQsElERCq 27 (79)
T PF14182_consen 16 LLFLQSELERCQ 27 (79)
T ss_pred HHHHHHHHHHHH
Confidence 334455555553
No 163
>PRK10698 phage shock protein PspA; Provisional
Probab=65.77 E-value=47 Score=23.78 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+.....++.-+..++...+..+..+..++..++.+|.++..+-....
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666665544433
No 164
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=65.31 E-value=32 Score=21.64 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 32 YISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 32 ~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.|..|++||...|..++...++.+=++.=||+-+.
T Consensus 30 d~e~eLerCK~sirrLeqevnkERFrmiYLQTlLA 64 (79)
T PF09036_consen 30 DIEQELERCKASIRRLEQEVNKERFRMIYLQTLLA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999998888888876554
No 165
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.05 E-value=46 Score=23.48 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
+-.++..|+.....+|+.++-.-..++.+..++..+..+|...|..++..
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~e 136 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQE 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777666553
No 166
>PHA01750 hypothetical protein
Probab=64.89 E-value=31 Score=21.37 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 31 DYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 31 E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
|..++|+..+-..+.++..+...++.+++++..++
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 45578888888888888888888888888776654
No 167
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=64.88 E-value=53 Score=24.13 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
+..+.+.+.+++..++..+..++.+....+.++..+
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~ 170 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQAL 170 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344434444444444444443333333333333
No 168
>PRK08724 fliD flagellar capping protein; Validated
Probab=64.66 E-value=36 Score=28.77 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENL----TKLQQQFQQEQA 70 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l----~~lQ~~~q~~~~ 70 (75)
-+..|.+.|+..|++++.++..++.+++....++ ..|..-+.++.+
T Consensus 614 ~I~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMns 663 (673)
T PRK08724 614 SIRTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQG 663 (673)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999998888887655554 444444444443
No 169
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=64.51 E-value=43 Score=25.72 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+..|++-++..|..++.++..+...+..+...+..+...+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl 181 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKL 181 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4445555444444444444444444444444444444333
No 170
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=64.47 E-value=34 Score=21.78 Aligned_cols=54 Identities=19% Similarity=0.473 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAEL--------------------KRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Ei--------------------kr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...++...+|+.|++-+..|+ .|.+.++..++.+...+..++..|+.++.....
T Consensus 4 ~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 4 KKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777666665 456777777778888888888877777765544
No 171
>PRK04406 hypothetical protein; Provisional
Probab=64.45 E-value=30 Score=21.07 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..+++.|++-++.-|--.+..|.++..-.-..+..|..|+.+++.+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999988888888888888888888888888888888876644
No 172
>PRK02119 hypothetical protein; Provisional
Probab=64.38 E-value=29 Score=20.94 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..++.|++-++.-+-=.+..|.++..-.-+.+..|..|+.+++.+..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888877777777777777777777777777777777765543
No 173
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=63.66 E-value=42 Score=22.51 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=29.7
Q ss_pred hccHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELK----RHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eik----r~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+.++.+|...|.+-++-.+..|. .+..||..+..++++..+-...++.++-
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~ 92 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVT 92 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56677777777777777666653 3444555555555555444444444443
No 174
>PRK08453 fliD flagellar capping protein; Validated
Probab=63.08 E-value=33 Score=28.93 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLD----TKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e----~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+..|-+.+..++++++.++..++ .++++++.++..|...+.++-+
T Consensus 619 l~~~~~sL~~q~k~L~~q~~~~e~rL~~ry~rl~~qFsAmDs~IsqmNs 667 (673)
T PRK08453 619 LKIYEDSLTRDAKSLTKDKENAQELLKTRYDIMAERFAAYDSQISKANQ 667 (673)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666664443 3444445555555555555443
No 175
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=63.01 E-value=78 Score=25.56 Aligned_cols=52 Identities=19% Similarity=0.445 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..+-...+.++++-|..+...+...+..+.+.+...++++..++..+.....
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788899999999999999999999999999999999988876554
No 176
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=62.84 E-value=41 Score=22.11 Aligned_cols=49 Identities=14% Similarity=0.397 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++.+-...+..=++..++.+.|++.++..++.+..........++.++.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555555555555555444444444444444
No 177
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.58 E-value=44 Score=22.41 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+.|..-...||..+..++..++.+.+.+...|......+
T Consensus 27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 178
>KOG0964|consensus
Probab=62.55 E-value=55 Score=29.41 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=51.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
=+++.....+.|...++-+..|++..+-...++...+.....+|+.|+++.+..++...|
T Consensus 322 ~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr 381 (1200)
T KOG0964|consen 322 QRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGR 381 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344556667788889999999999999999999999999999999999998888776554
No 179
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.50 E-value=44 Score=22.40 Aligned_cols=49 Identities=12% Similarity=0.354 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDT---------KQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~---------q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.-..++.+.+.-+.++++.++..++++.. +...++.++..|...+....
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777666655443 34444455555555444443
No 180
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=62.32 E-value=60 Score=23.86 Aligned_cols=46 Identities=17% Similarity=0.414 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.....+..+++.+..++..++..+..++.+....+..+...+.++.
T Consensus 137 ~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 137 SRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666555555555555544433
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.02 E-value=41 Score=24.56 Aligned_cols=41 Identities=7% Similarity=0.121 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
++..+|+-+..||.++-..+..+.-+++.++++-.++-..+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444433333
No 182
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.98 E-value=53 Score=22.75 Aligned_cols=35 Identities=11% Similarity=0.340 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..++..++..+.....+.+.++..+.++..++..+
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554444444444444444433
No 183
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=60.82 E-value=45 Score=25.84 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
.+...++...++++..++..+...++.+.++...+++++..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555544444444444444444444444444433
No 184
>smart00338 BRLZ basic region leucin zipper.
Probab=60.77 E-value=29 Score=19.77 Aligned_cols=46 Identities=7% Similarity=0.355 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
-|...=.++..+ +..++..+..++.+-..++.++..|..++.....
T Consensus 16 aA~~~R~rKk~~----~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 16 AARRSRERKKAE----IEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444 3446666666666666777777766666655443
No 185
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=60.73 E-value=7.8 Score=24.54 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.|+.=|+-+..++.++...+..+..+...++.++..++
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44555555555555555555555555555555444443
No 186
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=60.63 E-value=57 Score=23.00 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.....|.+|||.++.||+.+-..-..-++......+.+.+.+.
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknk 126 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNK 126 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999888876655555555555555554443
No 187
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=59.99 E-value=65 Score=24.62 Aligned_cols=50 Identities=16% Similarity=0.314 Sum_probs=31.5
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+..+.+....+..|..-+.+|+++....+..+..+++.+.+...-+|..+
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666666666666666666666666665544
No 188
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.88 E-value=46 Score=27.01 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+.+++....+..++-+..|+..+..++.+++.+.+++++.+..|.
T Consensus 83 ~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 83 SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555666666666666666666666666655555555443
No 189
>PRK00846 hypothetical protein; Provisional
Probab=59.81 E-value=39 Score=20.91 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.+++.||+-++.-+-=.+..|..+..-.-+.+..+..|+.+++.+..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888877777777777788888888888888888877765543
No 190
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=59.61 E-value=53 Score=25.59 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=32.7
Q ss_pred hhhccHHHHHHHHHHHH-HH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRI-DY--ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRl-E~--I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+|+.+.+..+.++.+|- +. .-.+|-.++.....+..+.+.++.+...+.+++.+
T Consensus 6 ~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 6 LLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777774 11 12556666666666666666666666666655544
No 191
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.43 E-value=54 Score=22.35 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..++...++.+++++.+++.-+.++...-+.+-..+.+.|.++...
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888888888888888877777777777777777666543
No 192
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=59.11 E-value=43 Score=21.16 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...|+..|+-|++=+..+|.+-..+..++..+=..-.+...+|++...
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888877777777777777777776666655555666665544
No 193
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=59.11 E-value=54 Score=23.06 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
++++-+.-|..||.|++.+++++..--+-+...+.-+-++
T Consensus 69 g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~ 108 (157)
T COG3352 69 GQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSK 108 (157)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhh
Confidence 4556666777777888888887777666666655544443
No 194
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=59.02 E-value=33 Score=21.66 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
+|.++.|++..+..+...+.++..++.+...|
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554444444444444444
No 195
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=58.70 E-value=52 Score=23.26 Aligned_cols=51 Identities=12% Similarity=0.309 Sum_probs=29.5
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.+=.+||+|....-.-...-+.++++. +..-++.++ ......+...++..+
T Consensus 150 ~~~~~G~~l~~~~~~~~~~~l~~~~~~-------~~~i~~~l~--~~~~~~~~~~~~~~i 200 (205)
T PF04816_consen 150 AELEFGPVLLEKKDPLLKEYLQRKLRK-------LKRILQQLE--SSQAQKKYEELKEEI 200 (205)
T ss_dssp HHHHH-HHHHHHT-HHHHHHHHHHHHH-------HHHHHHHSH--TCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHhccCHHHHHHHHHHHHH-------HHHHHHhcc--ccchHHHHHHHHHHH
Confidence 455799999998777766655555555 666666555 222334455555444
No 196
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=58.65 E-value=51 Score=21.82 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~ 51 (75)
+.+.|.++|..+..++.+.
T Consensus 21 L~s~lr~~E~E~~~l~~el 39 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEEL 39 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333333
No 197
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=58.64 E-value=58 Score=22.53 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
...-+++|-+.|.+.|...+..-...+.-...-+..|.+-..+.++..
T Consensus 35 I~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~ 82 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLK 82 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998888777766666666666655555555443
No 198
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=58.43 E-value=79 Score=24.31 Aligned_cols=43 Identities=14% Similarity=0.343 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.-..++++|+.-+...+..++..++.+++....+...+.+|..
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555555555555555555555443
No 199
>PRK02793 phi X174 lysis protein; Provisional
Probab=58.41 E-value=38 Score=20.33 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
++++.||.-++.-+.-.+..|.++.+-.-..+..|..|+.+++.+..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788998888888888888888888888888888888887776644
No 200
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.38 E-value=55 Score=22.12 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+.+.+.+++.++..++..+...+.+.+.....+++.+......
T Consensus 78 ~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 78 ILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777766665543
No 201
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=58.30 E-value=12 Score=23.64 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=27.5
Q ss_pred hcchhhhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNVKKR-IDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v~kR-lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+||+.+=.... ..+..+ .+-+..|+.|++.-+.....++..+...+.
T Consensus 12 ~G~~~~~~~~~---~~~~~~~~~~~~~E~~rl~~Al~~~~~eL~~l~~~~~ 59 (123)
T PF05524_consen 12 IGPAFVLRPPE---PEIPERHIDDIEAEIERLEQALEKAREELEQLAERAE 59 (123)
T ss_dssp EEEEEE------------TTB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccc---CcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655544333 333333 357888999999999888888877777643
No 202
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=58.18 E-value=66 Score=25.54 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=25.9
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
|....+...+++.++++-+..++.++...+..++
T Consensus 271 V~k~~~~~m~k~~~ki~~~~~~~~~~~~~~~~~~ 304 (391)
T smart00435 271 VSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFE 304 (391)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556778888889999988888888877665444
No 203
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=58.04 E-value=63 Score=22.70 Aligned_cols=51 Identities=14% Similarity=0.343 Sum_probs=33.0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+...........|+..|..+|.++..++....+....++..+......+.
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666777777777777777777777777766666666655544
No 204
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.41 E-value=50 Score=21.38 Aligned_cols=54 Identities=13% Similarity=0.251 Sum_probs=43.6
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
|.++-++...++..+.-+..+|..+...+..+-+.-..++-+-..|...+.+.-
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788899999999999999999999998888888888777777666543
No 205
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=57.07 E-value=16 Score=23.13 Aligned_cols=36 Identities=17% Similarity=0.430 Sum_probs=32.0
Q ss_pred hhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 9 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTI 44 (75)
Q Consensus 9 lvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i 44 (75)
-.||+.--|-.-+|..-+.+|++-++.+|-.+|+..
T Consensus 45 elGpyfYNQGi~da~a~i~ekl~d~te~l~~LEkpv 80 (82)
T COG5460 45 ELGPYFYNQGIKDARAVIEEKLADMTEELFALEKPV 80 (82)
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 469999999999999999999999999998888654
No 206
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=57.05 E-value=88 Score=25.26 Aligned_cols=50 Identities=18% Similarity=0.431 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.+..++...++-+..+++++...+.++-..+++.+..+..+...++.+..
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk 150 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRK 150 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888989998888888888888776544
No 207
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.77 E-value=69 Score=23.70 Aligned_cols=26 Identities=4% Similarity=0.222 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
..++-+.+++.+++..|.++.++.++
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 208
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.72 E-value=51 Score=23.23 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.|+..+..+++.++++.+.+.+++..++..++.++
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555444
No 209
>KOG0996|consensus
Probab=56.66 E-value=47 Score=30.12 Aligned_cols=60 Identities=17% Similarity=0.333 Sum_probs=46.6
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+--+|..+|+--++++. .+..|+++...+|.++...|++..+-+.+.+..+..+.....
T Consensus 893 ~i~~i~~e~~q~qk~kv~-~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~ 952 (1293)
T KOG0996|consen 893 KIDEIGGEKVQAQKDKVE-KINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIE 952 (1293)
T ss_pred HHHHhhchhhHHhHHHHH-HHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 355688999988888775 588899999999999988888777777777777666665444
No 210
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=56.57 E-value=94 Score=25.33 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
+-.-|.+.-..+.+-++.+|+.+...+..+.++....+.+|.+++.+++.....
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333455555667777677777776666666677778888888888877766543
No 211
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=56.19 E-value=56 Score=26.36 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..||+=-+=++++.|.+++.++.++.+++..+.........++..++.
T Consensus 119 ~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~ 166 (507)
T PF05600_consen 119 VRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACK 166 (507)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788899999999999999999999999999999988887765
No 212
>PHA02562 46 endonuclease subunit; Provisional
Probab=55.76 E-value=95 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~ 47 (75)
......+...+..|+++++.++..+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666633
No 213
>PF14425 Imm3: Immunity protein Imm3
Probab=55.54 E-value=55 Score=21.84 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCchhhHHhhcchhhhccH--HHHHHHHHHHHHHH
Q psy14231 1 MKDGEVYKLIGPILVKQEM--EEAKQNVKKRIDYI 33 (75)
Q Consensus 1 ~~da~VYKlvGpvLvkqd~--~ea~~~v~kRlE~I 33 (75)
|++..||=.+|.+++.+++ -..+..+-++|.-|
T Consensus 44 ~EkiIv~~~igEi~l~~~~i~~~~~~~i~~~L~~~ 78 (117)
T PF14425_consen 44 TEKIIVDTAIGEILLSHNKIFVGQKEGITKRLSQF 78 (117)
T ss_pred HHHHHHHHHHHHHHhhcchHHhhHHHHHHHHHHhc
Confidence 4678899999999999995 35556666666543
No 214
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=55.46 E-value=69 Score=24.40 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+...++...++.+...++++...++.+..+.+++++++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455666666666666666666666666666666655544
No 215
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.21 E-value=23 Score=25.92 Aligned_cols=44 Identities=16% Similarity=0.429 Sum_probs=31.2
Q ss_pred hhhHHhhcchhhh----------ccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhH
Q psy14231 4 GEVYKLIGPILVK----------QEMEEAKQNVKKRIDY-----ISAELKRHDDTIATL 47 (75)
Q Consensus 4 a~VYKlvGpvLvk----------qd~~ea~~~v~kRlE~-----I~~Eikr~e~~i~~~ 47 (75)
++.||.+|-+|++ -++..|..-+..=+++ -++.|++++.+|+.+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhc
Confidence 5899999999965 2456777776666666 566677777776644
No 216
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.94 E-value=56 Score=21.19 Aligned_cols=52 Identities=29% Similarity=0.437 Sum_probs=33.5
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 13 ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 13 vLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
||+.|++-.++..+.-..+|=-++ +.|..+..+..+.+.+..++.+...+.+
T Consensus 53 IlmsQNRq~~~dr~ra~~D~~inl--~ae~ei~~l~~~l~~l~~~~~~~~~~~~ 104 (108)
T PF06210_consen 53 ILMSQNRQAARDRLRAELDYQINL--KAEQEIERLHRKLDALREKLGELLERDQ 104 (108)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 689999999999998888883322 3444455555555555555555544443
No 217
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=54.78 E-value=35 Score=27.48 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTH----RENLTKLQQQFQQEQAA 71 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~----~~~l~~lQ~~~q~~~~~ 71 (75)
..+..|-..|+.+|++++.+++++.++.+.. +.++..|..-+.++.+.
T Consensus 418 g~i~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~~~~~qf~~m~~~~~~m~sq 469 (483)
T COG1345 418 GIITGRTDSLNKQIKSLDKDIKSLDKRLEAAEERYKTQFNTLDDMMTQMNSQ 469 (483)
T ss_pred ceeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888887776655544 44445555555555443
No 218
>PRK14160 heat shock protein GrpE; Provisional
Probab=54.76 E-value=80 Score=22.89 Aligned_cols=38 Identities=11% Similarity=0.313 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+.....++..++..+..++++...+++++..+++.+.
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aefe 92 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYD 92 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555443
No 219
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.76 E-value=68 Score=22.11 Aligned_cols=38 Identities=11% Similarity=0.299 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
+...+.....+|+.++..++...+-.+.+++++..||-
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444443
No 220
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.75 E-value=1.1e+02 Score=24.54 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+++++.-+..+...++..|+++++.+..+..+|.+.+
T Consensus 50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 50 LEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333
No 221
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.70 E-value=1.1e+02 Score=24.59 Aligned_cols=51 Identities=16% Similarity=0.349 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
..+....+.++++-|..+...+...+.++.+.+...+.++..++..+....
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777778888888888888888888888888887766543
No 222
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=54.43 E-value=46 Score=22.02 Aligned_cols=20 Identities=5% Similarity=0.253 Sum_probs=10.7
Q ss_pred chhhHHhhcchhhhccHHHH
Q psy14231 3 DGEVYKLIGPILVKQEMEEA 22 (75)
Q Consensus 3 da~VYKlvGpvLvkqd~~ea 22 (75)
+.-||-..|.+++=.-.--+
T Consensus 81 E~fiF~Va~~li~~E~~Rs~ 100 (134)
T PF07047_consen 81 EAFIFSVAAGLIIYEYWRSA 100 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567666666664433333
No 223
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=54.05 E-value=82 Score=22.84 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.4
Q ss_pred hhhccHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDY 32 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~ 32 (75)
|+||.+-||..+|+.|..-
T Consensus 14 LLKqQLke~q~E~~~K~~E 32 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSE 32 (202)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 7888888888888887643
No 224
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=53.98 E-value=52 Score=20.55 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 38 KRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 38 kr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+|+..-|....++....+.+|..|..+.+
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~ 32 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKT 32 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 225
>KOG1103|consensus
Probab=53.73 E-value=77 Score=25.68 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..++.+.-.+|+..|+.|.+++-+.+....+.+++-+..+....|..
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 45677778899999999999999999999999999998888776643
No 226
>PRK09866 hypothetical protein; Provisional
Probab=53.72 E-value=79 Score=27.18 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=41.4
Q ss_pred hhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 5 ~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.+|...||..++.-......+....-|| ++.+...+....+.++.++..+-..++.
T Consensus 409 ~~~~~a~~~al~sa~~kl~~~a~~~~d~-------l~~r~~gl~~~~~~L~~~I~~~e~d~~~ 464 (741)
T PRK09866 409 AAYANASLYALRSAAHKLLNYAQQAREY-------LDFRAHGLNVACEQLRQNIHQVEESLQL 464 (741)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999998888888888888888 6666666666666666666666555543
No 227
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.65 E-value=88 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
..+++-+..|++++...++.+....+..+.....+++
T Consensus 341 ~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 341 ESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 228
>PRK01156 chromosome segregation protein; Provisional
Probab=53.33 E-value=93 Score=25.99 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
..+++-+.+++.+++..+..+..+.+.+..++
T Consensus 687 ~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 687 RKALDDAKANRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33344444444444444444444333333333
No 229
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.18 E-value=49 Score=22.20 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
.+.-+..|+..+...++.++.++.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 230
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.14 E-value=53 Score=20.33 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.+++=..+++-|+-| -|..|..+.-..-..+..+.++|.++...
T Consensus 5 ~lE~Ri~eLE~r~Af-------QE~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 5 ELEARIIELEIRLAF-------QEQTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777 66667777766666677777776666544
No 231
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=52.97 E-value=67 Score=21.52 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
++--.+.+....+..|.+++.+...+...+.+++.++..+.
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555555443
No 232
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=52.83 E-value=1.1e+02 Score=24.03 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...-+++|-+.|.++|...+..-+.++.-.......+.+...+.++...
T Consensus 26 i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~ 74 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVE 74 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999888876666666666666666666655554443
No 233
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.81 E-value=87 Score=22.73 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.+.++.+.++-...++.........+..++..+..+|.++.++....
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555444433
No 234
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=52.71 E-value=60 Score=20.84 Aligned_cols=31 Identities=13% Similarity=0.406 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+..++.+++....+.++++..+.+...++.
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 235
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.98 E-value=51 Score=19.83 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.+.-|+++...+++++++...++.++......+.....
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777766666655443
No 236
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=51.36 E-value=69 Score=21.17 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
..+.......|++.|...+..+...-.+...+++.++.+-..|+..+=..+
T Consensus 42 Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~ 92 (141)
T PF13874_consen 42 QEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVL 92 (141)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778889999999888888888888888888888888877664433
No 237
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.35 E-value=79 Score=21.85 Aligned_cols=36 Identities=11% Similarity=0.329 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
.++-+...+......+..+......+..+|.+++.+
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k 134 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK 134 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444433
No 238
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=51.29 E-value=1.3e+02 Score=24.42 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
.+..++...++.|++-+++|++.++..++++..+......
T Consensus 211 ~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888777777765554433
No 239
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=51.06 E-value=87 Score=24.28 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
...+.+++.....++..++.+...+..+.+.++.++.++..++....++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 17 ERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666677888888888888888888888888888777766543
No 240
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.01 E-value=83 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
++......+++-+..++.+++..+..++...+
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.89 E-value=68 Score=24.04 Aligned_cols=47 Identities=6% Similarity=0.166 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
-....+..+|...+++|.++.. +..++.|.+...+.+.+....++..
T Consensus 56 ~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~ 102 (262)
T COG1729 56 YRLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSL 102 (262)
T ss_pred hccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567788888888888888888 8888888877777777665555543
No 242
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=50.84 E-value=35 Score=21.08 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDD 42 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~ 42 (75)
.+...++-+.++-+.+.+
T Consensus 40 ~l~~~~e~lr~~rN~~sk 57 (108)
T PF02403_consen 40 ELQQELEELRAERNELSK 57 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 333333333333333333
No 243
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=50.69 E-value=15 Score=25.94 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=29.6
Q ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDT 43 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~ 43 (75)
-|..|.--|..+..+++.++++.|..||.+....
T Consensus 138 Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~~~ 171 (176)
T COG1675 138 CGEDLEEYDSSEEIEELESELDELEEELERNDKL 171 (176)
T ss_pred CCchhhhccchHHHHHHHHHHHHHHHHHhccccc
Confidence 3888999999999999999999999988887654
No 244
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=50.14 E-value=77 Score=21.39 Aligned_cols=40 Identities=10% Similarity=0.250 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
..+.|+..|..++.++.+......++..|..++.......
T Consensus 85 ~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 85 QQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667888888888888888888888888888776654
No 245
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=50.03 E-value=1.2e+02 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHD 41 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e 41 (75)
+-...+.++++.|+..|..+.
T Consensus 341 ~~~~~~~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 341 EELEELKEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444443333
No 246
>KOG2264|consensus
Probab=49.53 E-value=1.3e+02 Score=25.95 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++-|-.-+++||..+...|..+++-+...+.+|..|...+.
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 33343445777777777777777666666666555544433
No 247
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.32 E-value=99 Score=27.43 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
-+.++..+++-+..++..+...++++..++..+...+..++..+.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 345556666666666666666666666666666666665555553
No 248
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=49.31 E-value=1e+02 Score=22.50 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELK-------RHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 27 ~kRlE~I~~Eik-------r~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+.|+..++.-+. .+-.+|.+++....++|..+++++-+++++..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455555444333 44556666666666666666666666665543
No 249
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=49.29 E-value=1e+02 Score=27.06 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDT 49 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~ 49 (75)
|.+.-...+++.++.+++|+.+++..+...+-
T Consensus 839 D~~~e~~rLekel~kl~Kel~kl~~~L~n~~f 870 (1052)
T PRK14900 839 DLAAETARVDKEIGKVDQDLAVLERKLQNPSF 870 (1052)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHhcCchh
Confidence 56666778999999999999999988887553
No 250
>KOG1760|consensus
Probab=49.13 E-value=66 Score=21.99 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
+++.+.++.+-++-.+++.+..+.++..+.+.+
T Consensus 86 LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 86 LEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666555443
No 251
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.95 E-value=92 Score=23.96 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+.+..+..++.||.+........++++..+..++.++|...++..
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~ 254 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA 254 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777777777777778877777776554
No 252
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=48.94 E-value=1.2e+02 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
|+++.+..++++..++...+.+|.+|.
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 253
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.89 E-value=1.3e+02 Score=27.61 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.++..++..+..++.+.......+..+|.
T Consensus 383 eEleelEeeLeeLqeqLaelqqel~elQ~ 411 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQLADYQQALDVQQT 411 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 254
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=48.71 E-value=40 Score=21.28 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDD---TIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~---~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.+|..+.-..|+|-|++=+.+.+. .-.++++....+.+.+.....+++..
T Consensus 10 lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 10 LEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 456666667777776665543322 22344555555555555555555443
No 255
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.57 E-value=1e+02 Score=22.42 Aligned_cols=50 Identities=8% Similarity=0.321 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+..-+....+-|--|...|..+|..|+..+..-++.+..+..+..++..+
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666777888888888888888888888888887777766544
No 256
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=48.54 E-value=60 Score=25.65 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=39.5
Q ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHR 55 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~ 55 (75)
.|.-.++-+.++|..-+++-.+++...|++|+.....+.+...++.
T Consensus 189 ~g~~~F~g~~~~a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~ 234 (379)
T PF04518_consen 189 MGTDNFPGSYFMALAKLEKEREQIRRDIKSCERAKAVLNKQLARVK 234 (379)
T ss_pred cchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667789999999999999999999999999888888777664
No 257
>KOG1962|consensus
Probab=48.51 E-value=1.1e+02 Score=22.50 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.++-...|+++....++..+++-..++++.+.++
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333333333333333333333333333333333
No 258
>PRK14162 heat shock protein GrpE; Provisional
Probab=48.51 E-value=70 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
++..+..++.+...+++++..+++
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~A 67 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQA 67 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444433
No 259
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=48.49 E-value=77 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
++.+++.++.+....++++..+++++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (364)
T TIGR01242 11 LEDEKRSLEKEKIRLERELERLRSEIER 38 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444445544444443
No 260
>PHA02675 ORF104 fusion protein; Provisional
Probab=48.44 E-value=72 Score=20.50 Aligned_cols=62 Identities=24% Similarity=0.330 Sum_probs=43.1
Q ss_pred chhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 3 da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
|+-||-.=.| -+.+.++-..+|.+-...|...-+.+...++.++.-.+.+|..+..|-.++-
T Consensus 21 ~~~vy~ag~~--~~esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKID 82 (90)
T PHA02675 21 DNGVYAAGAP--SKESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKID 82 (90)
T ss_pred CCceeecCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455544333 3445555555566666667777778888999999999999999888887653
No 261
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.37 E-value=94 Score=21.87 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+.+|.++++..+..++.+.+.+..++..|.++....
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666677777777777777777776655443
No 262
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=48.15 E-value=72 Score=20.42 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+.++++.+...+..++.++..++.-.+.+...+.
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~ 111 (118)
T cd04776 78 LEKMLEKIEKRRAELEQQRRDIDAALAELDAAEE 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666444444455444444444444444433
No 263
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=48.13 E-value=50 Score=24.67 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+++.|+|.+|...+.-..+.|..+.++|..+-
T Consensus 14 ~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~t 46 (251)
T COG5415 14 TADLSRLESQIHQLDVALKKSQSILSQWQSRLT 46 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888888888888888888888886553
No 264
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.12 E-value=93 Score=21.72 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTK 60 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~ 60 (75)
+.++..++.-++.|+..++..+.++..+.+.......+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555444444
No 265
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=48.00 E-value=83 Score=22.24 Aligned_cols=40 Identities=10% Similarity=0.441 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHREN 57 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~ 57 (75)
.++.| ...+..|++.++.++..-+..+++++++.+-..+.
T Consensus 115 knL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~ 154 (194)
T PF15619_consen 115 KNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQLELENKS 154 (194)
T ss_pred CCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45555 67788888888888888888888888777654443
No 266
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.99 E-value=96 Score=21.83 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
++..+....+...++-...-+..+..++.+++.+.+..+.+-..|-...+.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666655555556666666666655555555544433433
No 267
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=47.48 E-value=74 Score=20.36 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
....+.+++.-+..++..+...+..+........+
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~ 115 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAELDAAEERCRE 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444443
No 268
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=47.35 E-value=53 Score=24.67 Aligned_cols=36 Identities=6% Similarity=0.198 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+.-++..|..+.....+...+...++.++...+.++
T Consensus 244 l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 244 LAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444444444444444444333
No 269
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.09 E-value=1.1e+02 Score=22.42 Aligned_cols=41 Identities=12% Similarity=0.316 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+..|++.=+|.-.+..+||++.......+..|+.++....+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777788888888888888888887777766554
No 270
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.92 E-value=94 Score=21.42 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
......+|.-...++..++.++.++...+......+..++.++..
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666666666666666666666666666555543
No 271
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=46.88 E-value=63 Score=19.40 Aligned_cols=65 Identities=15% Similarity=0.364 Sum_probs=40.1
Q ss_pred hHHhhcchhhhcc-----HHHHHHHHHHHHHHHHHHHHHHHH--H------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQE-----MEEAKQNVKKRIDYISAELKRHDD--T------IATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 6 VYKlvGpvLvkqd-----~~ea~~~v~kRlE~I~~Eikr~e~--~------i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+|-+++|.|-.-+ .......+..+++-.+.++..+.. . +..+..++..++.++..+...++....
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777765432 334455666677777777766555 1 122667777777777777776665543
No 272
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=46.76 E-value=1.1e+02 Score=24.29 Aligned_cols=23 Identities=17% Similarity=0.615 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~ 47 (75)
=+.+|++-|+.+|+.++..+..+
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~ 189 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGEL 189 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 46778888888888887777764
No 273
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=46.32 E-value=74 Score=20.06 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=6.2
Q ss_pred HHHHHHhHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHR 55 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~ 55 (75)
++.++..++.....+.
T Consensus 91 l~~~i~~l~~~~~~l~ 106 (116)
T cd04769 91 IRAQITELQQLLARLD 106 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4433333333333333
No 274
>KOG0980|consensus
Probab=46.10 E-value=1.5e+02 Score=26.35 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
|.++-..|++.-++-+..+-.+.+....+..+..+.++.++..++.++.+...
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999999999999999999999988888887776554
No 275
>PRK12765 flagellar capping protein; Provisional
Probab=45.87 E-value=95 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
+..|-+-|+.+|++++.++..+++.++.
T Consensus 530 l~~~~~~l~~~~~~l~~~~~~~~~rl~~ 557 (595)
T PRK12765 530 LTKYDESLTNEIKSLTTSKESTQELIDT 557 (595)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 276
>PRK12765 flagellar capping protein; Provisional
Probab=45.79 E-value=1.4e+02 Score=24.61 Aligned_cols=48 Identities=6% Similarity=0.140 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+.-....++++++-|..++.+++.||..+...+.+....+..|-.+++
T Consensus 530 l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~ 577 (595)
T PRK12765 530 LTKYDESLTNEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLE 577 (595)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888887888887776666655554444444443
No 277
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.67 E-value=1.9e+02 Score=24.52 Aligned_cols=38 Identities=13% Similarity=0.397 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHREN 57 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~ 57 (75)
+-|+..+.+|+..+..++++--..+.+++...+.+++.
T Consensus 557 ~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ 594 (717)
T PF10168_consen 557 DLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRES 594 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888887777665444444444444333333
No 278
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=45.65 E-value=62 Score=18.98 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.++.+++.++..++.+-..++.++..|.
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555555554444443
No 279
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=45.64 E-value=71 Score=19.67 Aligned_cols=49 Identities=10% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+.+...-...|+..+..++.+--..+.++.+.++-...+|..|..++..
T Consensus 34 L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 34 LLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778999999999999999999999999999999988887754
No 280
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.61 E-value=1.2e+02 Score=26.75 Aligned_cols=47 Identities=11% Similarity=0.365 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..+.+..|++-+...|.++..+.+.+++++.....++..+..++..+
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~ 647 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQA 647 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666666666555555555555444433
No 281
>KOG1962|consensus
Probab=45.61 E-value=76 Score=23.26 Aligned_cols=39 Identities=8% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+.++++--.+++++.+.....+.+|.+.+..+...|-.+
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 334444444555555555555666666555555555433
No 282
>PRK09039 hypothetical protein; Validated
Probab=45.58 E-value=1.1e+02 Score=23.34 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+.||..+..++..++..+.....+..
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 283
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=45.43 E-value=1.1e+02 Score=21.88 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=43.9
Q ss_pred HHhhcchhhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 7 YKLIGPILVKQEMEEAKQNVKKRIDYISAELK-RHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 7 YKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eik-r~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+-.+|.-+...+=+...+.+..|++-+...|+ +++.+-++++.+-+.++..+..|...=++..
T Consensus 153 ~~~l~~~m~~~~G~~~l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~lC~~l~~L~~~E~~L~ 216 (229)
T PF11101_consen 153 LQALGNEMGSSEGDQNLQAFEQRMEGLQQQIEQEMEAQAQELEQKAQALCDSLQQLDQQEQQLQ 216 (229)
T ss_pred HHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444334556677777777777775 6899999999999999999988875444443
No 284
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=45.36 E-value=1.4e+02 Score=22.87 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
++..|.++ ..+.+.++.+.+.+.......++.|..|...+......
T Consensus 99 EL~~Rk~L-~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a 144 (355)
T PF09766_consen 99 ELEQRKRL-EEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKA 144 (355)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44455544 45566666666777777777777777777766655443
No 285
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=45.19 E-value=1.8e+02 Score=24.18 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
...+..|+..-..+++........++.+.+.++++|..++..++..
T Consensus 257 ~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaS 302 (546)
T PF07888_consen 257 EAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQAS 302 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333444455555566666555555533
No 286
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=45.16 E-value=71 Score=19.54 Aligned_cols=20 Identities=5% Similarity=0.325 Sum_probs=7.6
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~ 59 (75)
++.+++.++.+...++.++.
T Consensus 75 l~~~l~~l~~~~~~~~~~~~ 94 (104)
T PF13600_consen 75 LEEELEALEDELAALQDEIQ 94 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 287
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.04 E-value=25 Score=19.93 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQD 52 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e 52 (75)
+++++..+++.++++.+
T Consensus 49 ~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 288
>KOG0250|consensus
Probab=44.79 E-value=1.3e+02 Score=26.93 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=6.8
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l 58 (75)
+...+.+++.+...++.++
T Consensus 406 L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 289
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.70 E-value=1.1e+02 Score=21.64 Aligned_cols=45 Identities=18% Similarity=0.458 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.-+++..+++..|.-++.||.++|. .+.+...++.+..-|..++.
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le~----~~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLEE----IQSKSKTLRNKANWLESELE 161 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666665555555543 23344444455444444443
No 290
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.61 E-value=1.6e+02 Score=23.63 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=39.7
Q ss_pred hhhccHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRI--DYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRl--E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+++.+.+..+..+.+|. ..+-.+|-.++..-..+....+.++.+...+.+++..
T Consensus 6 ~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~ 61 (429)
T COG0172 6 LIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGR 61 (429)
T ss_pred HhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888884 4446677777777777777777777777777776653
No 291
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=44.58 E-value=1.8e+02 Score=24.61 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=38.0
Q ss_pred hcchhhhccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNVKKRIDYISA---ELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v~kRlE~I~~---Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+|+.|...=.++...++...++-|.. .+......+..+.....+++....+|...++...
T Consensus 218 ~~~~lg~~i~~~l~~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK 280 (806)
T PF05478_consen 218 IGSLLGGDIQDQLGSNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVK 280 (806)
T ss_pred ccchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666 7777777776666666666666666666555443
No 292
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=44.51 E-value=65 Score=18.92 Aligned_cols=40 Identities=13% Similarity=0.350 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.+++-+++++..|..++..+......++..+...+.+...
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777766655443
No 293
>COG1422 Predicted membrane protein [Function unknown]
Probab=44.45 E-value=1.1e+02 Score=22.36 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=10.1
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q psy14231 37 LKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~ 56 (75)
++++.+..+.+++..++.++
T Consensus 74 m~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 74 MKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444
No 294
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=44.20 E-value=1.7e+02 Score=23.51 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=26.4
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++.++++++.+|.+ ++.|+..+-..+..+...+++.+..+..++....
T Consensus 286 ~~~ELe~ak~~L~~----~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 286 AKKELEEAKKELEK----AKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777666543 4445555555555555555555555555554433
No 295
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=44.19 E-value=1.4e+02 Score=22.61 Aligned_cols=48 Identities=13% Similarity=0.338 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..+.+-..+++....|++.+...++..++....++.++.++...+-.+
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666666666666555443
No 296
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=44.08 E-value=82 Score=20.35 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTK 50 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q 50 (75)
+..+...+.+++..+..+|++++..++.+-++
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~ 37 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKK 37 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666666777666666666666555443
No 297
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.98 E-value=2e+02 Score=24.40 Aligned_cols=8 Identities=0% Similarity=0.007 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy14231 20 EEAKQNVK 27 (75)
Q Consensus 20 ~ea~~~v~ 27 (75)
++....++
T Consensus 514 ~~li~~L~ 521 (771)
T TIGR01069 514 NVLIEKLS 521 (771)
T ss_pred HHHHHHHH
Confidence 33333333
No 298
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.94 E-value=85 Score=24.82 Aligned_cols=32 Identities=9% Similarity=0.312 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+++|++| ....+..|+++-++.++.++.+|.
T Consensus 287 ~~EEK~~Y------qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 287 SMEEKMAY------QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44556666 345567777778888888888887
No 299
>KOG2189|consensus
Probab=43.87 E-value=57 Score=28.35 Aligned_cols=41 Identities=15% Similarity=0.422 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDD---------------TIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~---------------~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
.+++.|+-|.++||++.+. .+-+++.+.+++..++.++.+.
T Consensus 59 demeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n 114 (829)
T KOG2189|consen 59 DEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNAN 114 (829)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888887433 3446666666666666655543
No 300
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=43.81 E-value=25 Score=21.96 Aligned_cols=23 Identities=9% Similarity=0.401 Sum_probs=18.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKR-IDYISAELKRHDDTIA 45 (75)
Q Consensus 23 ~~~v~kR-lE~I~~Eikr~e~~i~ 45 (75)
...+-+. -+|+.+|++|++..+.
T Consensus 50 m~Ki~~~g~~fv~~E~~RL~~lL~ 73 (95)
T PF07749_consen 50 MEKIIEKGEEFVAKEIARLERLLE 73 (95)
T ss_dssp HHHHHHSGTHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHh
Confidence 3445555 8999999999999887
No 301
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=43.80 E-value=1.2e+02 Score=21.80 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=21.6
Q ss_pred cchhhhccHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 11 GPILVKQEMEEAKQN---VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 11 GpvLvkqd~~ea~~~---v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
|-+|+.=|-.+.... ....+.-+..++..++..+..++.+....+..+...
T Consensus 67 Gq~L~~ld~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a 120 (334)
T TIGR00998 67 GDVLVRLDPTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQA 120 (334)
T ss_pred CCEEEEECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443332 233344444444444444444444443333333333
No 302
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.60 E-value=1.3e+02 Score=22.76 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=24.6
Q ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
+....+....+.-......-.+|+..++..+..++...+.++..
T Consensus 153 ~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 153 FAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555556666666666666666555555444
No 303
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=43.59 E-value=80 Score=19.67 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
..++.++--+..|+.+-+..+.+..+..+.+...+..|...+.
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3555666666677777777777777777777777776665544
No 304
>KOG3478|consensus
Probab=43.38 E-value=1e+02 Score=20.79 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
+.++.+---...+=|+=++..|+.++.+....++++.+....+-++++..++
T Consensus 64 kqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~ 115 (120)
T KOG3478|consen 64 KQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQP 115 (120)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444455455556666777778888888888887777665555554443
No 305
>KOG2909|consensus
Probab=43.32 E-value=90 Score=24.80 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+.+++=++.|.+|+-+++.-+++-...-+.++..++.||.+-
T Consensus 117 ~si~~iid~I~~e~~qie~Dlk~r~a~yn~ak~nl~nlerK~ 158 (381)
T KOG2909|consen 117 QSIKEIIDLISKEIAQIENDLKTRAAAYNNAKGNLQNLERKK 158 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhc
Confidence 356677889999999999999999999999999999888653
No 306
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=43.19 E-value=1.1e+02 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 54 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~ 54 (75)
.-...+..+++-++.||+.++..-..+..+..+.
T Consensus 57 ~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~ 90 (180)
T PF04678_consen 57 SRERQLRKRLEELRQELAPLEKIKQEIDEKAEKR 90 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666666665555555555544443
No 307
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.18 E-value=1.2e+02 Score=21.76 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
...+-..|..|.+.|+..++.++.++.+=.++.+.-+..+|.
T Consensus 49 ~~~~q~~~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~ 90 (206)
T COG3166 49 QIAEQQQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQV 90 (206)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455667889999999999999999988877777777666663
No 308
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=42.31 E-value=40 Score=23.12 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHREN 57 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~ 57 (75)
++|+.++..+.+++.++..+.+.
T Consensus 3 ~~~~~~e~~~~~l~~~i~~~~~~ 25 (154)
T PF13015_consen 3 KEIDEAERKLSDLESKIRELEDD 25 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555544444444443
No 309
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=42.23 E-value=8.4 Score=24.83 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=0.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+..+--|.+++..+|..+..++.+..+++.++.+|+.+...
T Consensus 5 d~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 5 DNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp --------------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444455666667777777777777777777777765543
No 310
>KOG3584|consensus
Probab=42.21 E-value=65 Score=25.15 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=37.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+-.+++-|++.=.|+.|| +|=||.|+.-|+.|-..+=++|..|.
T Consensus 296 LmKNREAARECRRKKKEY----VKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 296 LMKNREAARECRRKKKEY----VKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred HHhhHHHHHHHHHhHhHH----HHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 345789999999999999 67799999999999998888887664
No 311
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.96 E-value=1.6e+02 Score=22.70 Aligned_cols=42 Identities=10% Similarity=0.341 Sum_probs=23.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHR 55 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~ 55 (75)
.+..+.+.-..+...-.+||+.++.+++.++...+.++..-+
T Consensus 147 yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 147 FVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444434445555666766666666666666655555443
No 312
>KOG0250|consensus
Probab=41.90 E-value=1.8e+02 Score=26.18 Aligned_cols=41 Identities=10% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
..+.+.++.|+.|++.++..+..|..+.+.++..+...+.+
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee 437 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE 437 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34445555555555555555555555555555555444443
No 313
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.66 E-value=2e+02 Score=26.52 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 31 DYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 31 E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+-...++..++..+..++.+...++.++.+++..
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqe 405 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQA 405 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444443333
No 314
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=41.55 E-value=75 Score=18.78 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
-++-.+.+..+++.+++.++.++.+++
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334466666666666666666666655
No 315
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=41.42 E-value=1.5e+02 Score=22.09 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.++++.-..+|-++|...+.+....+++.+.+...|.+.++.++..
T Consensus 45 ~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~ 90 (230)
T PF03904_consen 45 IQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK 90 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999999999999999999999999999887777644
No 316
>KOG1029|consensus
Probab=41.36 E-value=1.8e+02 Score=25.86 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.++.+...+++.++-|++|+.+--..|..+..|++++++.+...|-..++.
T Consensus 539 ~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 539 KKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888888888888877777554443
No 317
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.22 E-value=99 Score=21.09 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 31 DYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 31 E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.+...+.+..+..++.+.+++++....+..|+.|....
T Consensus 150 ~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 150 KLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777778888888888777777777766543
No 318
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.03 E-value=1.1e+02 Score=20.72 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDD---TIATLDTKQDTHRENLT 59 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~---~i~~~e~q~e~~~~~l~ 59 (75)
...+++..+.--.+.|+.+.. -..+++++++.++....
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 445555555555666666666 55666666666666666
No 319
>PRK08453 fliD flagellar capping protein; Validated
Probab=40.86 E-value=1.6e+02 Score=24.99 Aligned_cols=50 Identities=4% Similarity=0.005 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
..-...|.+++.-|..++.+++.++...+.........+..+-+++++..
T Consensus 620 ~~~~~sL~~q~k~L~~q~~~~e~rL~~ry~rl~~qFsAmDs~IsqmNsq~ 669 (673)
T PRK08453 620 KIYEDSLTRDAKSLTKDKENAQELLKTRYDIMAERFAAYDSQISKANQKF 669 (673)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33455688888888888876776666666555555555555555554443
No 320
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.83 E-value=2.1e+02 Score=25.50 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=38.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.+.++.+...++...++-+..+|+.++..+..+......++..+.++......
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888888888888887777777777777666554443
No 321
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.77 E-value=96 Score=19.77 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=11.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
++..++.++.+...++.++..|+.
T Consensus 39 ~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444444444444444444444443
No 322
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.55 E-value=28 Score=21.92 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
|+-...|..-++-+..|+..+...+..++.+....+.....|+..+
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 4445555566666666666666666666666666655555555443
No 323
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.48 E-value=1.6e+02 Score=22.29 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+++..++.++..+....+....+..+++.+++
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 324
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=40.39 E-value=1e+02 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
..|-+.|+..-+.+.++.+.+++.|.+++..+
T Consensus 68 ~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 68 KKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666666666666666888888887765
No 325
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=40.31 E-value=49 Score=21.79 Aligned_cols=36 Identities=11% Similarity=0.338 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
..++...++-+..+++.+..++..+....+..+.++
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 326
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=40.26 E-value=90 Score=23.23 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+++.+...++.+......++++.+..++++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455555555666666666665554
No 327
>PLN02678 seryl-tRNA synthetase
Probab=39.88 E-value=1.7e+02 Score=23.40 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHH-HH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRI-DY-ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 17 qd~~ea~~~v~kRl-E~-I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.+.++.+.++.+|- +. +-.+|-.++.....+..+.+.++.+...+..++..
T Consensus 13 ~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 13 GDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred cCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777774 11 23556666666666666666666666666665543
No 328
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=39.72 E-value=1e+02 Score=19.75 Aligned_cols=38 Identities=5% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
+..-...+++++.-...+++++...++....+...++.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555544444443
No 329
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=39.30 E-value=88 Score=18.95 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=21.9
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIA 45 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~ 45 (75)
++.++......+..+...|+.-|++++....
T Consensus 44 ~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 44 LREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455667777777888888888887776544
No 330
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=39.29 E-value=2.1e+02 Score=23.34 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
...+++.|+++++..+..+++.++.....-+.++..-
T Consensus 287 ~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g 323 (564)
T COG1293 287 LEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKG 323 (564)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666766677666666666666666555555443
No 331
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.19 E-value=1.8e+02 Score=22.52 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=23.3
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
-++...+...+..|=-||++.+..+=........++...+.+..+.+
T Consensus 247 ~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 247 QQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666555555444444444444444444443333
No 332
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=39.05 E-value=1.6e+02 Score=24.16 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.+....+|...++-..+|+.+++..+..+..++..+++.+..+..+-
T Consensus 28 s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn 74 (701)
T PF09763_consen 28 SEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQN 74 (701)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567788888888888888888888888888888888887776543
No 333
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=38.92 E-value=94 Score=24.55 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+++=+..|.+|+.+++.-+.+........+..++.+|.+-.
T Consensus 116 sI~~~i~li~~E~~~~~~d~r~~~~~f~~Ak~~~~~~qrk~~ 157 (383)
T COG5127 116 SIEKAILLIDGEYRRISKDYREKAEEFDGAKRECEKLQRKTR 157 (383)
T ss_pred cHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 477888999999999999999999999999999998886543
No 334
>PRK14148 heat shock protein GrpE; Provisional
Probab=38.84 E-value=1.4e+02 Score=21.25 Aligned_cols=35 Identities=6% Similarity=0.261 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++++-++.+|..++..+.++..+.-+++..+..+.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~r 74 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIR 74 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 335
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=38.62 E-value=34 Score=28.80 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=27.6
Q ss_pred HhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 8 KLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 46 (75)
Q Consensus 8 KlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~ 46 (75)
.+.||+---.|.+.....+.++++.+++||++++.++..
T Consensus 803 ~~~~~l~~~~d~~~e~~~l~k~l~~~~~~i~~~~~kl~n 841 (861)
T TIGR00422 803 EIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGKLEN 841 (861)
T ss_pred EEEEEhHhhcCHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 345664434566677778888888888888888887764
No 336
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=38.45 E-value=83 Score=18.39 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 41 DDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 41 e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
...|..++.....++..+.+++..++..
T Consensus 57 s~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 57 SDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666666666555543
No 337
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.38 E-value=1.7e+02 Score=21.98 Aligned_cols=47 Identities=15% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.+++...|..-+.-+..++..+...+.++...+..+..+|.+-..++
T Consensus 160 ~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 160 LNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443333
No 338
>PLN02320 seryl-tRNA synthetase
Probab=38.23 E-value=1.2e+02 Score=24.75 Aligned_cols=53 Identities=9% Similarity=0.183 Sum_probs=31.6
Q ss_pred hhhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYI-SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I-~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++..+.+..+.++.+|---+ -.+|-.++.....+..+.+.++.+...+.+++.
T Consensus 71 ~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~ 124 (502)
T PLN02320 71 WIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMK 124 (502)
T ss_pred HHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777774111 245555666666666666666666655555543
No 339
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.03 E-value=94 Score=18.90 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=23.9
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 12 PILVKQEMEEAKQNVKKRIDYISAELKRH 40 (75)
Q Consensus 12 pvLvkqd~~ea~~~v~kRlE~I~~Eikr~ 40 (75)
|-+=.+|.+.+...|..|+.-..+=|..+
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~l 47 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIREL 47 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45668899999999999999988777763
No 340
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.01 E-value=2.4e+02 Score=24.84 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy14231 32 YISAELK 38 (75)
Q Consensus 32 ~I~~Eik 38 (75)
.++.+|.
T Consensus 401 ~l~~~i~ 407 (1163)
T COG1196 401 ELKREIE 407 (1163)
T ss_pred HHHHHHH
Confidence 3333333
No 341
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=37.89 E-value=1.2e+02 Score=20.92 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 37 LKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+.|++.--+.-+.|...++.+|.+|+....
T Consensus 22 Ldrfd~ER~eWE~Q~kemq~kieql~~e~~ 51 (141)
T PF14818_consen 22 LDRFDRERQEWEQQWKEMQRKIEQLQKEVK 51 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455566666666666666666666665544
No 342
>PF15463 ECM11: Extracellular mutant protein 11
Probab=37.74 E-value=1.2e+02 Score=20.04 Aligned_cols=43 Identities=16% Similarity=0.476 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.+-+++.+..++...|+.||++-...+ +.+...+..+|.+++.
T Consensus 91 kl~~~R~~~r~~~~~fe~eI~~R~eav---~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 91 KLKEARRKLRKKFAVFEDEINRRAEAV---RAQGEQLDRKLEKMKE 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 456788888889999999998876544 3444445555555554
No 343
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.73 E-value=1e+02 Score=21.68 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 31 DYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 31 E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.-|..|.+++..-++..+...+.++..+....
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 344
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.60 E-value=1.4e+02 Score=20.80 Aligned_cols=36 Identities=8% Similarity=0.258 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 32 YISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 32 ~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.+..+|+.++..+..++.+...++.....+.....+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544443
No 345
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=37.54 E-value=1.7e+02 Score=21.74 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRID----YISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 20 ~ea~~~v~kRlE----~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
.|...-+++++| ||++.+++.....+.-..-.++.+.+|-++..+
T Consensus 95 ~eli~pLE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrK 143 (232)
T cd07646 95 NELLTQLEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKK 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555 888888888777777666777777776666654
No 346
>KOG3119|consensus
Probab=37.38 E-value=1.3e+02 Score=22.10 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
.+..|+.+..+|-.++..++..+++++..++.-+
T Consensus 219 e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 219 EMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444444444444444444433
No 347
>KOG3647|consensus
Probab=37.38 E-value=2e+02 Score=22.41 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
-|..++.-|++-.+.-+..+-.-...+..++++.+-+++.+++.|..
T Consensus 112 ~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 112 SAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666555555566666666666666555554443
No 348
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.33 E-value=2.6e+02 Score=23.76 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+..++.+.+-+..+...++.....++++.+.+..+-.
T Consensus 529 ~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433333
No 349
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.16 E-value=99 Score=22.04 Aligned_cols=23 Identities=9% Similarity=0.411 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~ 47 (75)
.|+.+|.-|+.||+.++.+++.+
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334344444333333333
No 350
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=37.09 E-value=82 Score=17.91 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy14231 46 TLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 46 ~~e~q~e~~~~~l~~lQ~~~ 65 (75)
++..|.+.++.++..||..+
T Consensus 3 aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555443
No 351
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.95 E-value=1.1e+02 Score=19.39 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=10.5
Q ss_pred HHHHHHhHHHHHHHH--HHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTH--RENLTKLQQ 63 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~--~~~l~~lQ~ 63 (75)
.+.|+..++.+.+.+ ++.+.+|+-
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l 72 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQL 72 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444444444 444444333
No 352
>KOG1029|consensus
Probab=36.71 E-value=2.1e+02 Score=25.50 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
++...+.+-.|..-+||+.+..+|+.++.++-.+--+-..|..++.+.
T Consensus 472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 344455555666666666666666666666555555444444444433
No 353
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.69 E-value=1.6e+02 Score=24.35 Aligned_cols=46 Identities=11% Similarity=0.261 Sum_probs=23.7
Q ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHR 55 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~ 55 (75)
+..+.+.++.+.-...-.+-++||+.++..+..++.+.+.+.+.-+
T Consensus 249 la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 249 IANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444455555555555555555555544444433
No 354
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=36.29 E-value=1.7e+02 Score=23.09 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
+..+.-.-+..++.-+..++-.++..+.++++++..++.+|..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566777788888888888888999999999999999888887764
No 355
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=36.24 E-value=50 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+|..++..++++..+..++...+..+.
T Consensus 19 ~l~~l~~~~~~l~~~~~r~~ae~en~~ 45 (165)
T PF01025_consen 19 ELEELEKEIEELKERLLRLQAEFENYR 45 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 356
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=36.03 E-value=1.3e+02 Score=22.72 Aligned_cols=51 Identities=12% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISA----ELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~----Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+|+..-+-.=|+++.. =..|++.+++....+++.++.++...|.++.+..+
T Consensus 17 eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444444444322 23567777777888888888888888877776544
No 357
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=35.96 E-value=1e+02 Score=18.67 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHREN 57 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~ 57 (75)
++..++..+.+.-..+-..+..++..+..+...+-++
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333333333333333333
No 358
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.87 E-value=37 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=9.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTK 60 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~ 60 (75)
|++++.+|++|...+.+++.+
T Consensus 36 L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 36 LKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHhhcccccccch
Confidence 444444444444444444433
No 359
>KOG0161|consensus
Probab=35.85 E-value=2.5e+02 Score=26.88 Aligned_cols=57 Identities=23% Similarity=0.483 Sum_probs=25.9
Q ss_pred HHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 7 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 7 YKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
-|+.|.+. +..+...+++.-.+-...++++.+..+..++.+.+.....+.++|.++.
T Consensus 1044 rkle~el~---~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~ 1100 (1930)
T KOG0161|consen 1044 RKLEGELK---DLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100 (1930)
T ss_pred HHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666663 3333344444444444444444444444444444444444444444333
No 360
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=35.44 E-value=1.1e+02 Score=19.04 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 31 DYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 31 E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+...++.+++..+..++..-..+.++|..+.
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566666666666666666666665543
No 361
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.96 E-value=1.2e+02 Score=25.68 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=27.3
Q ss_pred hhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14231 9 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDT 49 (75)
Q Consensus 9 lvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~ 49 (75)
|-+.-=||+|+--|-.+...-+|.+.+.|.+-|..|.+|..
T Consensus 610 LsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 610 LSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444588999999999999999955555555544444333
No 362
>KOG0972|consensus
Probab=34.91 E-value=2.3e+02 Score=22.40 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
-.++.+-+|-|.+-=|.+..+++.+-.+..+...++.+++...+++.
T Consensus 254 h~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~ 300 (384)
T KOG0972|consen 254 HKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQAS 300 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445555554455555566666666666666666666555543
No 363
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.80 E-value=2e+02 Score=24.51 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=7.2
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q psy14231 43 TIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 43 ~i~~~e~q~e~~~~~l~~lQ 62 (75)
.++.|+...+.++..++.|.
T Consensus 437 e~~~L~~~~ee~k~eie~L~ 456 (652)
T COG2433 437 ENSELKRELEELKREIEKLE 456 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 364
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=34.37 E-value=1.4e+02 Score=21.81 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
+..-++..|.+++..+..+..+.
T Consensus 19 e~~~Lk~kir~le~~l~~Lk~~l 41 (236)
T PF12017_consen 19 ENKKLKKKIRRLEKELKKLKQKL 41 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555444
No 365
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.33 E-value=1.4e+02 Score=25.56 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKM 73 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~ 73 (75)
+||.+++.++..++..=..+...|.+.|.++..+.+..+
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als 303 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALS 303 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
No 366
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.24 E-value=1.3e+02 Score=19.49 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+|+.++...+.++..+...++..+....
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~ 37 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLESQA 37 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 367
>KOG3335|consensus
Probab=34.20 E-value=1.5e+02 Score=21.25 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=37.8
Q ss_pred hhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 5 ~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.||-.-|.|||=.-.-.++.+=. +-|-=..||..+...+..++.+.+.++..+.+|-+++...
T Consensus 77 ~iF~vggg~lv~Ey~R~~~~e~~-kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 77 FIFSVGGGVLVFEYWRQARKERK-KEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred HheeecceeeeehhHHhhhcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45666666666433332222222 2444456777777778888888888888777776555443
No 368
>KOG2264|consensus
Probab=34.18 E-value=2.2e+02 Score=24.65 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
++++--|+-|+.-|+.|...|-.-+..+..++..+++.|.++.++.+
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33444444444444445555555555555555555555555444444
No 369
>PF15556 Zwint: ZW10 interactor
Probab=34.10 E-value=2e+02 Score=21.50 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
|.+.++-.+|.+|.---..|+.++-..+.++.-|-...++++..-|.=+|
T Consensus 137 Q~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~qtfLq 186 (252)
T PF15556_consen 137 QHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQTFLQ 186 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999888889999999999999888888888887776554
No 370
>PRK11519 tyrosine kinase; Provisional
Probab=33.97 E-value=1.9e+02 Score=23.96 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=27.4
Q ss_pred HHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14231 7 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 54 (75)
Q Consensus 7 YKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~ 54 (75)
=..+..+.+.++.+.-.....+-++||+.++..+..++...+...+.-
T Consensus 246 aN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 246 LNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666555555666666666655555555555444443
No 371
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=33.77 E-value=1.2e+02 Score=18.93 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+..||+++...+..+......+...+..++
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666665554
No 372
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=33.44 E-value=1.3e+02 Score=19.14 Aligned_cols=39 Identities=8% Similarity=0.206 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
.++..++++|++-+.+.+..++...--...+...++...
T Consensus 7 ~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v 45 (116)
T PF10552_consen 7 MQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAV 45 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467778888888866666666555444444444444433
No 373
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=33.39 E-value=2.1e+02 Score=21.48 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDY 32 (75)
Q Consensus 19 ~~ea~~~v~kRlE~ 32 (75)
+..|+.++.+=-+-
T Consensus 65 l~~ak~eLqe~eek 78 (258)
T PF15397_consen 65 LQQAKAELQEWEEK 78 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 374
>KOG0981|consensus
Probab=33.26 E-value=2.3e+02 Score=24.35 Aligned_cols=54 Identities=15% Similarity=0.339 Sum_probs=35.5
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD------------TKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e------------~q~e~~~~~l~~lQ~~~q~~ 68 (75)
|..+.+...+++..||+-..-+|+.++..+..-. +-.+..+.++++|+.++..+
T Consensus 630 v~K~h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl 695 (759)
T KOG0981|consen 630 VSKTHEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKL 695 (759)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999998888877766554331 12355555666666555543
No 375
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=33.25 E-value=1.6e+02 Score=20.10 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHD 41 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e 41 (75)
+++........++-+..+++.++
T Consensus 44 lE~~l~~~~~~~~~~~~~~~~~~ 66 (151)
T PF14584_consen 44 LEDLLNELFDQIDELKEELEELE 66 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444333333333
No 376
>KOG1655|consensus
Probab=33.17 E-value=1.3e+02 Score=22.16 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+.=|.+++.+-.++++++.++-.+|.+++.+++.+
T Consensus 18 ~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 18 QDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455677777777777777777777777666654
No 377
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=33.01 E-value=1.2e+02 Score=18.72 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++.++..+..+.+.+..++..+|
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 378
>KOG2391|consensus
Probab=32.97 E-value=2.5e+02 Score=22.28 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=16.0
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 13 ILVKQEMEEAKQNVKKRIDYISAELKRH 40 (75)
Q Consensus 13 vLvkqd~~ea~~~v~kRlE~I~~Eikr~ 40 (75)
.++.-+.+..+.-++++++-..+|+..+
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~sl 237 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESL 237 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666655554433
No 379
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.90 E-value=1.5e+02 Score=19.82 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
+....+..|++.....++.+...+.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666
No 380
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.64 E-value=1.8e+02 Score=20.41 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.++..+..++..+....+.++..+...+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333
No 381
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.53 E-value=2.7e+02 Score=22.47 Aligned_cols=48 Identities=13% Similarity=0.349 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..++...++-+...+..+-..+.++-...++.+..+..+...++.+..
T Consensus 107 ~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk 154 (569)
T PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRK 154 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777777777777777777766543
No 382
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.42 E-value=2e+02 Score=24.33 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
..|+-+....|..-.+.|++++...++..+.+...+..++.+|+.
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666778888888889998888888888888877777765553
No 383
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.38 E-value=3.1e+02 Score=23.43 Aligned_cols=35 Identities=9% Similarity=0.250 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++++-.+.|++.|+-.+..+++..+.+..++..+.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444333
No 384
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=32.24 E-value=70 Score=26.26 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=17.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 42 DTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 42 ~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.+|++|++|+..+|+++.+|++++..
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666777777777777777766543
No 385
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.03 E-value=53 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=9.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q psy14231 43 TIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 43 ~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
+|+.|++|++++++++..++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 444444444444444444333
No 386
>KOG4552|consensus
Probab=31.97 E-value=1.5e+02 Score=22.34 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 38 KRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 38 kr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
-+.+..+..+++..++.-..|.+||.++..+
T Consensus 70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~a 100 (272)
T KOG4552|consen 70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKSA 100 (272)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445556666666666666677777666544
No 387
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.93 E-value=1.3e+02 Score=18.84 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
...-+.++++.+..+|.++....+.+.....
T Consensus 80 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (116)
T cd04769 80 LQQALEDKKQEIRAQITELQQLLARLDAFEA 110 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 388
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=31.69 E-value=95 Score=23.99 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
++||..+-.+|.++++...+++..|.++..
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466777777777777777777777776654
No 389
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.63 E-value=1.5e+02 Score=19.36 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=42.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+.++-++...++..+.-+..|+..+...+..+-+.-..++-+-..|...+.+.
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778889999999999999999999988888888777777777666653
No 390
>PF13514 AAA_27: AAA domain
Probab=31.23 E-value=3.6e+02 Score=23.55 Aligned_cols=65 Identities=20% Similarity=0.363 Sum_probs=44.7
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYIS---AELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~---~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+...+||-+...+.+++...+..|++-.. .++.++...+..++.+.......+..++.++...+.
T Consensus 769 L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 836 (1111)
T PF13514_consen 769 LAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLE 836 (1111)
T ss_pred HHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455665555555678888888877654 455666777777778888888888877777766554
No 391
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=31.06 E-value=1.9e+02 Score=21.05 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q psy14231 37 LKRHDDTIATLDTKQDTHREN 57 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~~ 57 (75)
|..+.....++..++..++..
T Consensus 231 l~~l~~E~~~I~~re~elq~~ 251 (254)
T PF15458_consen 231 LESLEKEKEEIEEREKELQEL 251 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 392
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.89 E-value=1.6e+02 Score=24.50 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
......|+.-++.++..+.........+...+...|.+|+.++..
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344566666666666666666666666666666666666555544
No 393
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.22 E-value=1.4e+02 Score=18.56 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy14231 27 KKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~ 47 (75)
..+.+++...+..++.++..+
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l 98 (113)
T cd01109 78 PERLELLEEHREELEEQIAEL 98 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555333333333333333
No 394
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=30.19 E-value=1.4e+02 Score=18.55 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDY 32 (75)
Q Consensus 21 ea~~~v~kRlE~ 32 (75)
++..-+..+++.
T Consensus 75 ~~~~~l~~~~~~ 86 (108)
T cd01107 75 ELRKLLREKLAE 86 (108)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 395
>KOG0978|consensus
Probab=30.10 E-value=3.4e+02 Score=23.32 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
..++.+++++...++.+++..+.+++.+.......++.+-.+...+.
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rle 607 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLE 607 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888888877776655443
No 396
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.07 E-value=3.5e+02 Score=23.03 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.++....++....-...+...++.....+++..+.+..+..++..
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333444444444444444444444444444443
No 397
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.04 E-value=3.5e+02 Score=23.02 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHREN 57 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~ 57 (75)
+++-+..++++.+-+..+...++.....++.+.+.++++
T Consensus 520 L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 520 LSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333
No 398
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=29.70 E-value=18 Score=23.92 Aligned_cols=53 Identities=11% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDT---HRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~---~~~~l~~lQ~~~q~~~~~ 71 (75)
...+..++...+-.++..+..+..+++.++.+... +...|.++...+.++...
T Consensus 50 ~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~ 105 (138)
T PF06009_consen 50 ANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDA 105 (138)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555566666666666666 666666666666655543
No 399
>PLN02943 aminoacyl-tRNA ligase
Probab=29.67 E-value=84 Score=27.20 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+.+|++|++++++.++++.++++.+|.
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLs 913 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLS 913 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467777777777777777777666654
No 400
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=29.65 E-value=1.5e+02 Score=18.82 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTI 44 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i 44 (75)
++..+++....+..+...|+..|+.++...
T Consensus 42 ~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 42 LKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777766543
No 401
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=29.57 E-value=3.1e+02 Score=22.37 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=51.8
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+....++--+.+...+...-|+++++-+..=|++.+..+..+++..+..+..-.-|.+.++..-
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g~ll~an~~~i~ 334 (564)
T COG1293 271 LDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIE 334 (564)
T ss_pred HHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777777778888899998888888999999999999999888888888887777543
No 402
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.28 E-value=2.5e+02 Score=21.23 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=38.6
Q ss_pred hhhhccHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 13 ILVKQEMEEAK----------QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 13 vLvkqd~~ea~----------~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.|+.|+..+|+ .++--|+..|..+.-|+-+.-+++.-+ +++.|.+.+.+++..+.
T Consensus 76 ~lL~QT~~~Skdh~~LSd~y~~~~~~rl~~~~ed~~Ri~KksKEi~~q---~~eeLlkV~~ELqt~mk 140 (263)
T cd07682 76 LLLNQVKRESRDHATLSDIYLNNIIPRFVQISEDSGRLFKKSKEVGLQ---LQEDLMKVLNELYTVMK 140 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45556555554 345668888999999998888887766 66777777777765543
No 403
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.27 E-value=1.6e+02 Score=22.52 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
.++-.++..|...+..||+.+|.+-..+++.+
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Em 34 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEM 34 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999997777777776666555544
No 404
>KOG4643|consensus
Probab=29.24 E-value=4.2e+02 Score=24.20 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
..+..|+++.++.+...|.++..+...++.-+..+..+..+|+....
T Consensus 407 eke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888887878877777777777777777777777775543
No 405
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=29.22 E-value=2.9e+02 Score=21.78 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 31 DYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 31 E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.-....+...+..+..++.+...+..++..|+..++..
T Consensus 88 ~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~l 125 (390)
T PRK10920 88 QELEGILKQQAKALDQANRQQAALAKQLDELQQKVATI 125 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555543
No 406
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=29.15 E-value=1.8e+02 Score=22.44 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
-+-|.++.+.++..+|..++..+.+++..|+..|....
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777888888888888888888877775544
No 407
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=28.78 E-value=89 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+.+|+.|++++++.++++.++++.+|.
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567777777777777777777766663
No 408
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=28.74 E-value=1.3e+02 Score=21.02 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~ 47 (75)
-|.+=++..++-.+.++..++.++.++
T Consensus 40 ~avSL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 40 GAVSLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 409
>PHA02096 hypothetical protein
Probab=28.72 E-value=46 Score=21.48 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=31.4
Q ss_pred chhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHH
Q psy14231 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKR 39 (75)
Q Consensus 3 da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr 39 (75)
|.++|-..|.|+.-.+-+||..++.+-.+-|..=++-
T Consensus 19 ~gnl~g~~~gv~fh~swe~a~~~~~~ak~~i~eylkg 55 (103)
T PHA02096 19 SGNLHGAFGGVMFHDSWEEADVSLKNAKKSIEEYLKG 55 (103)
T ss_pred cCcccccccceEEeccHHHhhhHHHHHHHHHHHHhcc
Confidence 5678899999999999999999999998887655543
No 410
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=28.70 E-value=91 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.478 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
+.+|++|++++++.++++.++++.+|.
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~ 835 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLS 835 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777777777777777666666654
No 411
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.60 E-value=2.3e+02 Score=20.41 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
.|+.++...+.+++.+...++.
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~ 237 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRA 237 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhcccc
Confidence 3333333333333333333333
No 412
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=28.47 E-value=1.8e+02 Score=20.02 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=36.3
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+.|+.-.+++..+=-.-...|++.+...-.+++.+...+..++++-|+.++.-
T Consensus 61 q~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAd 113 (138)
T PF03954_consen 61 QRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKAD 113 (138)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhh
Confidence 44555555565555556677888888777777777777777777777776654
No 413
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=28.26 E-value=1.9e+02 Score=19.50 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.++-..++-.=+..+.++++.++..++.+...-.....++..|..-+...+.
T Consensus 38 ~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~ 89 (162)
T PF05565_consen 38 IEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAME 89 (162)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555566666666666666666666666666655555443
No 414
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=28.20 E-value=97 Score=20.07 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQD 52 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e 52 (75)
||..|+.+|..|+.+..
T Consensus 97 ev~~L~~RI~~Le~~l~ 113 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVE 113 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 415
>PRK02463 OxaA-like protein precursor; Provisional
Probab=28.12 E-value=1.3e+02 Score=22.82 Aligned_cols=50 Identities=14% Similarity=0.324 Sum_probs=30.3
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHH
Q psy14231 12 PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD--THRENLTKLQQ 63 (75)
Q Consensus 12 pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e--~~~~~l~~lQ~ 63 (75)
|+.++|.+.-... ..|...|.-|++.+..+.++-..+++ +.+.+++++.+
T Consensus 77 PL~i~q~~ka~~~--~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~lyk 128 (307)
T PRK02463 77 PLGLYQSWKATYQ--SEKMAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQR 128 (307)
T ss_pred HHHHHHHHHHHHH--HHHHHHhChhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 5555666544433 47788888899999888876533332 23444555544
No 416
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.02 E-value=2.2e+02 Score=20.12 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=2.8
Q ss_pred HHHHHHhH
Q psy14231 40 HDDTIATL 47 (75)
Q Consensus 40 ~e~~i~~~ 47 (75)
++..+.++
T Consensus 44 le~e~~el 51 (185)
T PRK14139 44 AEAKAAEL 51 (185)
T ss_pred HHHHHHHH
Confidence 33333333
No 417
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.01 E-value=97 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDT 49 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~ 49 (75)
.++-+||.-++.|++++++.+.++++
T Consensus 292 De~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 292 DEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667777777777777777666654
No 418
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=27.88 E-value=1.2e+02 Score=19.49 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTH 54 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~ 54 (75)
||..++..-..-|..++++++.+++.+..+....
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~ 34 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKA 34 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665555443
No 419
>KOG2911|consensus
Probab=27.82 E-value=1e+02 Score=24.95 Aligned_cols=28 Identities=14% Similarity=0.554 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIA 45 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~ 45 (75)
|+--+...+.+++|+++.||++++....
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r 264 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLR 264 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888999999999999988876543
No 420
>KOG0963|consensus
Probab=27.66 E-value=3.5e+02 Score=23.02 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=31.6
Q ss_pred hhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 5 ~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
.||+.++.+==|+....+-.++..+++-+++|++++-..+.++.....
T Consensus 91 ~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~ 138 (629)
T KOG0963|consen 91 DVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELA 138 (629)
T ss_pred HHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 478888777666666666666666666677777666666555554443
No 421
>PF15456 Uds1: Up-regulated During Septation
Probab=27.65 E-value=1.9e+02 Score=19.16 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHREN 57 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~ 57 (75)
-+++....+.++|-+..|+.+++.+...+..++-.+-.-
T Consensus 79 ~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~Aa 117 (124)
T PF15456_consen 79 AEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTAA 117 (124)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777778877777777777777766665554433
No 422
>KOG3313|consensus
Probab=27.59 E-value=1.2e+02 Score=21.86 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=38.9
Q ss_pred hhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 5 EVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 5 ~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+||=.+| +|++.=+.+||.+=+++-+.. ..+.+..++..++=+|+++..++
T Consensus 111 kV~LWLGAnVMlEY~leEAeaLLkknl~s-------a~k~l~~~~~DldfLrdQvTTtE 162 (187)
T KOG3313|consen 111 KVYLWLGANVMLEYDLEEAEALLKKNLTS-------AVKSLDVLEEDLDFLRDQVTTTE 162 (187)
T ss_pred eEEEEecceeEEEecHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHhhceeee
Confidence 3555555 689999999999888877777 88888888888887777765443
No 423
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=27.54 E-value=1.5e+02 Score=18.09 Aligned_cols=18 Identities=0% Similarity=0.222 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELK 38 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eik 38 (75)
+...-+..+...+..+|.
T Consensus 73 ~~~~~l~~~~~~l~~~i~ 90 (103)
T cd01106 73 DLLEALREQKELLEEKKE 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444333333
No 424
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=27.34 E-value=1e+02 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 41 DDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 41 e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+..+.+.+++...++.++..++..+.
T Consensus 2 ~~~~~~~e~~~~~l~~~i~~~~~~l~ 27 (154)
T PF13015_consen 2 EKEIDEAERKLSDLESKIRELEDDLN 27 (154)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555566666666666655555443
No 425
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.24 E-value=1.3e+02 Score=17.04 Aligned_cols=33 Identities=12% Similarity=0.439 Sum_probs=21.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 37 LKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
|..++..+..++..-..++..+..|...++...
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777766665544
No 426
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=27.04 E-value=1.3e+02 Score=16.99 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHHH
Q psy14231 46 TLDTKQDTHRENLTKL 61 (75)
Q Consensus 46 ~~e~q~e~~~~~l~~l 61 (75)
++..+++.+.++|+.|
T Consensus 27 ~Lt~kL~~vs~RLe~L 42 (47)
T PF10393_consen 27 SLTQKLDAVSKRLEAL 42 (47)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344444333
No 427
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=26.97 E-value=34 Score=23.22 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.6
Q ss_pred cchhhhccHHHHHHHHHHHHHHH
Q psy14231 11 GPILVKQEMEEAKQNVKKRIDYI 33 (75)
Q Consensus 11 GpvLvkqd~~ea~~~v~kRlE~I 33 (75)
|.+|+.-|-.+....+++|++.|
T Consensus 135 g~~L~~~dn~~~i~~l~~~i~~l 157 (158)
T TIGR00373 135 GAMLDYLDNSEAIEKLEEQIKFL 157 (158)
T ss_pred CCEeeeccCHHHHHHHHHHHHhh
Confidence 77899999999999999999885
No 428
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=26.95 E-value=1.3e+02 Score=17.27 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 39 RHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 39 r~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.++..+.+...+++-++.+|.+++.
T Consensus 37 ~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 37 EAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555543
No 429
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=26.79 E-value=54 Score=22.75 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=30.2
Q ss_pred hhhHHh--hcchhhhccHHH--HHHHHH-----HHHHHHHHHHHHHHHHHH
Q psy14231 4 GEVYKL--IGPILVKQEMEE--AKQNVK-----KRIDYISAELKRHDDTIA 45 (75)
Q Consensus 4 a~VYKl--vGpvLvkqd~~e--a~~~v~-----kRlE~I~~Eikr~e~~i~ 45 (75)
.++|.+ +||.|+...... ...+-. .|++|-.+|.+|++...+
T Consensus 35 ~~lY~l~dv~~~l~~~~~~~~~~~~~p~~m~p~dRK~w~qsE~eRlk~e~e 85 (152)
T PF07278_consen 35 LKLYALRDVLPALFGPPMPADVDKMDPDDMTPKDRKAWWQSENERLKFEKE 85 (152)
T ss_pred CCcchHHHHHHHHhCCCCCcchhhcCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 356654 789998877643 334444 999999999999876543
No 430
>PRK10963 hypothetical protein; Provisional
Probab=26.66 E-value=1.4e+02 Score=21.13 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14231 48 DTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 48 e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+.|.+.+|+++..|+.++.+.+
T Consensus 43 ErQ~~~LR~r~~~Le~~l~~Li 64 (223)
T PRK10963 43 EWQMARQRNHIHVLEEEMTLLM 64 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 431
>KOG2077|consensus
Probab=26.61 E-value=4.2e+02 Score=22.91 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=28.1
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
||-|+---...+.--.+.+.+|+......--.++.+..++.++|..+.+++
T Consensus 323 VKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 323 VKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666677777776554444444444444444444444433
No 432
>PHA03386 P10 fibrous body protein; Provisional
Probab=26.54 E-value=1.9e+02 Score=18.77 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHD 41 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e 41 (75)
.|...|+.+.+-+...+..+.
T Consensus 12 ~dIkavd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 12 DAVQEVDTKVDALQTQLNGLE 32 (94)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 344555555555444444333
No 433
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=26.50 E-value=1.8e+02 Score=18.68 Aligned_cols=43 Identities=12% Similarity=0.404 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.+++..-+.|-+-|-.=+-..+.+++.+-+.+..+|.++...+
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778889888888888899999999999999888877654
No 434
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=26.32 E-value=3.2e+02 Score=21.45 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=27.8
Q ss_pred hhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 41 (75)
Q Consensus 5 ~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e 41 (75)
+||.++.|+|.+.|.+ ....|+.+..-+..-+.+..
T Consensus 300 ~~~~~l~P~l~~~dp~-l~~~id~~f~~v~~lL~~~~ 335 (375)
T PRK10378 300 KIVDLLRPLLEKANPE-LLAKVDANFKKVDTILAKYR 335 (375)
T ss_pred HHHHHhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999885 55778888888666555543
No 435
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=26.16 E-value=2.1e+02 Score=19.27 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=31.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.--+.....+|++||+.|+.-+..++..-++...-...++..+..-|
T Consensus 24 ~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q 70 (146)
T PF08702_consen 24 QDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQ 70 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccc
Confidence 34466778899999999777776666666665555555555444444
No 436
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.06 E-value=3.8e+02 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.325 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.|.+.++-+..+|..++..++.+......+...+.+...
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~ 370 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEA 370 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 437
>KOG2391|consensus
Probab=25.97 E-value=3.4e+02 Score=21.56 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.|+.|-|-|+.-+++++.-+.+++.+.-.++..+.=|-.+.+++
T Consensus 236 slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 236 SLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 438
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.92 E-value=2.4e+02 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
.+..+|++.++.+++.++...+.++..
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777776666666666544433
No 439
>PRK00106 hypothetical protein; Provisional
Probab=25.63 E-value=3.8e+02 Score=22.04 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..+..-...+..|-+.+......++.+-+.+..+.+.+..+-.+++....+.
T Consensus 97 ~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~ 148 (535)
T PRK00106 97 QELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQV 148 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.57 E-value=1.6e+02 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.454 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
|+..|+-++.++..|+.=+...+.+|.+|
T Consensus 165 v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 165 VREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444433
No 441
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.54 E-value=3.8e+02 Score=22.02 Aligned_cols=41 Identities=7% Similarity=0.161 Sum_probs=17.7
Q ss_pred HhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 8 KLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 8 KlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
..++.+.+....+.-.....+-.+|+.++|..+..++...+
T Consensus 174 N~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE 214 (754)
T TIGR01005 174 DAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAE 214 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444444333334444444444444444433333
No 442
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=25.35 E-value=2.3e+02 Score=19.43 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIA---TLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~---~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...++.-..+++|.+...+ ..+...+..+..+...+.++..+.+
T Consensus 29 ~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 75 (265)
T TIGR00999 29 QKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKS 75 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777665544 2345555555666666655555443
No 443
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.20 E-value=1.6e+02 Score=17.58 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=6.6
Q ss_pred HHhHHHHHHHHHHHHHH
Q psy14231 44 IATLDTKQDTHRENLTK 60 (75)
Q Consensus 44 i~~~e~q~e~~~~~l~~ 60 (75)
+.-++.....+-.+|..
T Consensus 52 ~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 52 RNALNKRKKQLLEDLEE 68 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 444
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=25.19 E-value=2.3e+02 Score=19.91 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
...+..|.+-|.++|-|++.-+....++....+.+|..|-.
T Consensus 46 id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~ 86 (157)
T COG3352 46 IDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEE 86 (157)
T ss_pred HHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHH
Confidence 34455566666666655544444444444444444444433
No 445
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.16 E-value=4.9e+02 Score=23.12 Aligned_cols=39 Identities=8% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.++..+.-...+.+.++..++...++.+..+..+...+.
T Consensus 611 ~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 649 (1201)
T PF12128_consen 611 QAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQ 649 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444443333
No 446
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.01 E-value=3e+02 Score=20.61 Aligned_cols=26 Identities=12% Similarity=0.438 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
...+.++.....+|++.++..++++.
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666665
No 447
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=24.84 E-value=2.8e+02 Score=23.69 Aligned_cols=14 Identities=43% Similarity=0.529 Sum_probs=8.9
Q ss_pred hccHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKR 29 (75)
Q Consensus 16 kqd~~ea~~~v~kR 29 (75)
..|.++|+..+.++
T Consensus 392 ~~~~~~~~~~L~~~ 405 (800)
T TIGR01063 392 SQNTEEAKTRLVER 405 (800)
T ss_pred CCCHHHHHHHHHHh
Confidence 35566677776665
No 448
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.77 E-value=2.2e+02 Score=18.89 Aligned_cols=43 Identities=7% Similarity=0.185 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
...+-++.+..|+.+.+..++.-.+.+..++.....+..++.+
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666666665555555544
No 449
>PRK01203 prefoldin subunit alpha; Provisional
Probab=24.62 E-value=2.3e+02 Score=19.11 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=27.7
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14231 13 ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHR 55 (75)
Q Consensus 13 vLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~ 55 (75)
+.|..+.+++...|+++++-+..=|......++.++.+...+.
T Consensus 79 y~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 79 VYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777766666666666666666666665554
No 450
>KOG0971|consensus
Probab=24.61 E-value=3.7e+02 Score=24.49 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
.+.+-+|.-++|+.-+.-.-..+.++.+.....|+.||.++-.+++.
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA 446 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGA 446 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Confidence 34556677778888888888888888888899999999988877764
No 451
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.35 E-value=2.5e+02 Score=19.55 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~ 47 (75)
+......+.+.++-+..+|..++..+...
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554444
No 452
>KOG4343|consensus
Probab=24.34 E-value=4.5e+02 Score=22.39 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=46.9
Q ss_pred chhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 3 DGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 3 da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
|.+|||--- =+|| +++-|-.-=.+|.||.. -+|.+++.+.+.-+.++.+=..|..++-.....
T Consensus 276 d~kv~krqQ-RmIK-NResA~~SRkKKKEy~~----~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 276 DIKVLKRQQ-RMIK-NRESACQSRKKKKEYML----GLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred CHHHHHHHH-HHHh-hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 556666544 3333 57778888889999944 488999999999999988888888877765543
No 453
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.32 E-value=2e+02 Score=20.68 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIA 45 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~ 45 (75)
+.+-..-+.+|+.-|..|+.++...++
T Consensus 23 l~~r~~~l~kKi~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 23 IGGRSEVVDARINKIDAELMKLKEQIQ 49 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666555543
No 454
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=24.31 E-value=2.2e+02 Score=18.82 Aligned_cols=41 Identities=20% Similarity=0.434 Sum_probs=12.7
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRI-DYISAELKRHDDTIATL 47 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRl-E~I~~Eikr~e~~i~~~ 47 (75)
+|+.+||. +...+++-...+.+-+ .+....++.++.++.+.
T Consensus 30 ~~k~~g~~-i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~~~ 71 (163)
T PF05405_consen 30 IYKKFGPS-IAEWLDERIQKIEDELNQSRNDHIKALKERIEQV 71 (163)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888884 3444444333333322 23333444455555543
No 455
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.22 E-value=1.7e+02 Score=17.50 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14231 47 LDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 47 ~e~q~e~~~~~l~~lQ~~~q 66 (75)
+..+.+.++.++..|+..++
T Consensus 70 l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 70 LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55555556666666555443
No 456
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=24.20 E-value=2.8e+02 Score=19.99 Aligned_cols=57 Identities=16% Similarity=0.294 Sum_probs=39.6
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIA-TLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~-~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
|+..+-..+..|.+++.-...|++++=.-.. +...+..-+..-+.+....+..++.+
T Consensus 74 I~~~LP~l~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G 131 (295)
T PF01031_consen 74 IRKSLPSLKSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDG 131 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556677788888888887777777766665 66666666666676666666665543
No 457
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=24.02 E-value=2.6e+02 Score=21.64 Aligned_cols=57 Identities=12% Similarity=0.245 Sum_probs=33.3
Q ss_pred hcchhhhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNV---KKRIDYISAELKRHDDTIATLDTKQDTHREN-LTKLQQQFQ 66 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v---~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~-l~~lQ~~~q 66 (75)
-|-+|++=|..+.+..+ +..+......+..++.++...+...+..+.. +...+..+.
T Consensus 77 ~Gd~L~~iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~ 137 (352)
T COG1566 77 KGDVLFRIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELE 137 (352)
T ss_pred CCCeEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788877776665544 4455565555555665555555555555553 555444444
No 458
>PRK11239 hypothetical protein; Provisional
Probab=24.01 E-value=1.7e+02 Score=21.55 Aligned_cols=25 Identities=12% Similarity=0.241 Sum_probs=13.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
++.++..++.+...++..+..+..+
T Consensus 188 Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 188 LQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555443
No 459
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=23.96 E-value=4.4e+02 Score=22.19 Aligned_cols=40 Identities=13% Similarity=0.327 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
.+.+.++=..+||.+++..|+..+.+.......+.....+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~ 122 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDK 122 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444444444333
No 460
>KOG4657|consensus
Probab=23.83 E-value=3.2e+02 Score=20.54 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=29.2
Q ss_pred hhccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISA---ELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~---Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
+++++.++...+.++.+.+.. +.-+++.-+++++.+.+.+...+..+-.
T Consensus 63 l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lke 114 (246)
T KOG4657|consen 63 LKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKE 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888777643 2344555555555555555554444433
No 461
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=23.81 E-value=2.4e+02 Score=19.16 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
+.+..-+.++++.|..+|.++....+.+..-.
T Consensus 73 ~~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 73 DDATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777776666666666555555443
No 462
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=23.70 E-value=2.1e+02 Score=20.25 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=23.4
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 13 ILVKQEMEEAKQNVKKRIDYISAELKRHDDT 43 (75)
Q Consensus 13 vLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~ 43 (75)
--|..--++|..|+++|-..+..|=+.++..
T Consensus 64 ~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a 94 (204)
T PF10368_consen 64 DEVKKLSDEALKNVDEREKELKKEKEAIEKA 94 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677899999999999988765555443
No 463
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=23.70 E-value=4.1e+02 Score=21.71 Aligned_cols=61 Identities=13% Similarity=0.320 Sum_probs=45.6
Q ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 10 IGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIA-TLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 10 vGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~-~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.-+.=+..+.++++..++...+-+...+..++..+. -.++...++..++..|+.++.++..
T Consensus 419 ~~~~~~~~~f~~~~~~l~~~~~~l~~~~~~~d~tl~~~~e~~~~~~~~ql~~Le~k~~~a~~ 480 (542)
T PF10079_consen 419 QDPSEIEDDFEEEKEQLEAQFEPLKEKAAKIDPTLEGLVEKNESKILKQLDYLEKKLLKAEK 480 (542)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557778888888898888888888888886665 4566677777888888877766544
No 464
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=23.69 E-value=2.4e+02 Score=19.01 Aligned_cols=28 Identities=7% Similarity=0.213 Sum_probs=17.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 39 RHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 39 r~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
-++..+..++++++.++.++..+-....
T Consensus 76 ~~~~~L~~Le~r~e~Lk~~~~~~~~~~~ 103 (120)
T PF04521_consen 76 DLNLELEKLERREEQLKTQIQVLTAAAK 103 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556666666777777776666554433
No 465
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=23.65 E-value=2e+02 Score=18.12 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=25.4
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
-|.--||. .........|..-.--|+.||-.++..+.+ ......+-.-+..+|.
T Consensus 28 ~yl~~~~~---~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~-~~~~~~la~~i~~lQ~ 81 (97)
T PF14966_consen 28 KYLRSGPE---EAYRQLCHEITQEFSAISKEILAIEAELRD-EHERPDLAELIRELQE 81 (97)
T ss_pred HHHhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHH
Confidence 45556665 334444444555555555555555544442 2222344444444443
No 466
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=23.58 E-value=3.3e+02 Score=20.62 Aligned_cols=34 Identities=12% Similarity=0.350 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
-..|+.|++- ...++..++...+.++.++.+|+.
T Consensus 38 F~rI~~Rv~~-------~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 38 FSRISARVER-------NRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555 666666666666666666666653
No 467
>PF13166 AAA_13: AAA domain
Probab=23.55 E-value=4e+02 Score=21.50 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=8.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy14231 38 KRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 38 kr~e~~i~~~e~q~e~~~~~l~ 59 (75)
++++..+..++.........+.
T Consensus 420 ~~~~~~i~~~~~~~~~~~~~~~ 441 (712)
T PF13166_consen 420 KELEKEINSLEKKLKKAKEEIK 441 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 468
>PHA02629 A-type inclusion body protein; Provisional
Probab=23.49 E-value=1.7e+02 Score=17.33 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTK 50 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q 50 (75)
.+|+-.++.|+.|+-..|+.+++=
T Consensus 32 rk~iavleaelr~~metik~lekf 55 (61)
T PHA02629 32 RKIIAVLEAELRKSMETIKALEKF 55 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888788777653
No 469
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=23.48 E-value=3.6e+02 Score=21.06 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
|-...|++|..++++-+-+-++-..||.++++
T Consensus 34 ~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 34 EQESFEKKIRQLEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44447777777777777777777777766543
No 470
>KOG0972|consensus
Probab=23.48 E-value=3.8e+02 Score=21.22 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
|+.-+++++.|-+.+..|+.-+-.++..++..+
T Consensus 257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~l 289 (384)
T KOG0972|consen 257 ITKALEKIASREKSLNNQLASLMQKFRRATDTL 289 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555555555433
No 471
>KOG2577|consensus
Probab=23.26 E-value=2.3e+02 Score=22.28 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
+.+|...+++|+..+...-+.|...+..++..|..+
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~l 177 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLL 177 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667755665555555555555555555555443
No 472
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.13 E-value=1.4e+02 Score=24.56 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
.+|+.|..++..|+++...++.+|.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777654
No 473
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=23.09 E-value=2.4e+02 Score=22.95 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
.++..+..+...+..-+...+++|.+|..++.+..+|.
T Consensus 8 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~ 45 (512)
T TIGR03689 8 ATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPP 45 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444666666677777777777777777777665544
No 474
>PRK10780 periplasmic chaperone; Provisional
Probab=22.87 E-value=2.4e+02 Score=18.81 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIA 45 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~ 45 (75)
.++...+++.......||++....++
T Consensus 42 k~~~~~le~~~~~~q~el~~~~~elq 67 (165)
T PRK10780 42 TGVSKQLENEFKGRASELQRMETDLQ 67 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555554
No 475
>PRK14153 heat shock protein GrpE; Provisional
Probab=22.79 E-value=2.4e+02 Score=20.15 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++-...+|..++..+.++..+.-++...+..+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~r 67 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFR 67 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555444444444444433
No 476
>KOG0995|consensus
Probab=22.69 E-value=4.7e+02 Score=22.06 Aligned_cols=25 Identities=16% Similarity=0.493 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIATLDTKQDTH 54 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~e~q~e~~ 54 (75)
++-.++||++.|..++.++.+...+
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433333333333333333
No 477
>KOG4674|consensus
Probab=22.69 E-value=2.6e+02 Score=26.70 Aligned_cols=45 Identities=20% Similarity=0.490 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
++..+++.+.++..|++.-..++-.++.++..++.....++..++
T Consensus 945 ~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~ 989 (1822)
T KOG4674|consen 945 VKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELE 989 (1822)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=22.56 E-value=3.3e+02 Score=20.20 Aligned_cols=42 Identities=12% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
|..+-.++++-|..+...+..++..++++...+..=|...+.
T Consensus 23 A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 23 AEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 479
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=22.52 E-value=2.3e+02 Score=18.51 Aligned_cols=48 Identities=25% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELK--RHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eik--r~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++|-+..-+.|+--|+.-+. ....+|.-+......+-++|.+++.+..
T Consensus 28 f~efKd~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k 77 (102)
T PF01519_consen 28 FDEFKDSNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQK 77 (102)
T ss_dssp HHHH---HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=22.37 E-value=2.6e+02 Score=20.60 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14231 33 ISAE-LKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA 75 (75)
Q Consensus 33 I~~E-ikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~~ 75 (75)
++.| |+.+..++..++...++...-|.+.++++=+++-..+++
T Consensus 1 Ms~etle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv~~~K~ 44 (216)
T PF07957_consen 1 MSDETLEELKKQVDELQALVKKQSKLISKTGQQVLELQVKKQKR 44 (216)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=22.36 E-value=2.1e+02 Score=17.97 Aligned_cols=38 Identities=13% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
+..-...+.+.++-....+++++.+.+.+.+++.+.+.
T Consensus 6 l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~Rt 43 (86)
T PF12958_consen 6 LQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERT 43 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG3684|consensus
Probab=22.32 E-value=2.2e+02 Score=23.48 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
+.-|..+++..|-|- +|.+|..++.+++.++..++.+
T Consensus 431 ~myd~~~~l~~~q~~-------le~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 431 DMYDLLQELHSRQEE-------LEKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhC
No 483
>PRK00106 hypothetical protein; Provisional
Probab=22.27 E-value=4.5e+02 Score=21.65 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
++.-..++++|.+.+...-+.++.+.+.++.+.+.+.+...++..-.++......+
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~ 161 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER 161 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>KOG4083|consensus
Probab=22.22 E-value=3.1e+02 Score=19.87 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLD-TKQDTHRENLTKLQQQF 65 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e-~q~e~~~~~l~~lQ~~~ 65 (75)
++++--..+.++-.|++.++.|++.+.+.+. --.+.-.+-.+..++.|
T Consensus 91 ~le~~~q~L~k~daf~Ke~larlEen~~e~ykv~~eqy~~aaE~VekrF 139 (192)
T KOG4083|consen 91 DLEEKSQELKKQDAFYKEQLARLEENSSEFYKVTTEQYQKAAERVEKRF 139 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
No 485
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.19 E-value=3.8e+02 Score=20.80 Aligned_cols=55 Identities=13% Similarity=0.337 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDT-------------KQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~-------------q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
++.+...++.+.+.-+..++.+++..+..+.+ ....+...+.++..++.+.....
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.16 E-value=4.2e+02 Score=21.24 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 23 KQNVKKRIDYISAELKRHDD---TIATLDTKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~---~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
..++-.+++-+..|+..++. .+..++++.+.+++++.++-.++........+
T Consensus 324 ~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~ 378 (563)
T TIGR00634 324 VEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAE 378 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=22.02 E-value=2.4e+02 Score=18.48 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
...-+++|-++|.+.+...+..-...+.-.......+.+...+.+......
T Consensus 32 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a 82 (141)
T PRK08476 32 LLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>KOG4797|consensus
Probab=21.99 E-value=2.6e+02 Score=18.84 Aligned_cols=50 Identities=12% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcC
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHR-----ENLTKLQQQFQQEQAAKMRA 75 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~-----~~l~~lQ~~~q~~~~~~~~~ 75 (75)
|.+-.|.++..|..++.+...++..-.-++ ++|.+++.++.....+.++.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~~~q~~~~~p~ 119 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQLSPQLCPESPQ 119 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhcccccCCCCCC
No 489
>KOG0946|consensus
Probab=21.94 E-value=5.8e+02 Score=22.83 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
+++...++--..+.+ ..++|.+++..+..+..+..+++-+.++|+.+++...+..+.
T Consensus 647 ~~~k~~e~l~~~~~k----yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsq 703 (970)
T KOG0946|consen 647 LAEKYHEELDDIQQK----YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQ 703 (970)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=21.88 E-value=3e+02 Score=19.54 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..+...++...-.+-... +..++..++.++-.....+..|+.+++.+
T Consensus 27 ~~~~~~~i~~~r~~l~s~-------y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l 73 (206)
T PF14988_consen 27 YIQQLEEIQRERQELVSR-------YAKQTSELQDQLLQKEKEQAKLQQELQAL 73 (206)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.87 E-value=2.2e+02 Score=18.04 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.+.+.++...+.++....+.++.++..-..+-+.++.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.85 E-value=2.2e+02 Score=24.12 Aligned_cols=52 Identities=10% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA 75 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~~ 75 (75)
.++.++++.|+.--+++..++++...+.+.+.+++..+-..++...-..+.|
T Consensus 582 ~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~A 633 (717)
T PF10168_consen 582 QELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEA 633 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
No 493
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.85 E-value=1.6e+02 Score=17.41 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDT 43 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~ 43 (75)
+.+..+++.|.=-+..||+++..+
T Consensus 32 d~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 32 DLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
No 494
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.81 E-value=2.7e+02 Score=21.72 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=0.0
Q ss_pred hhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 4 GEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 4 a~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
+.+=|.||. .+...+++.+.+..+..-|..+|+.++..++.++.+....-..|
T Consensus 54 N~~sk~i~~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 54 NELSKQIGK--AKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHH--HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 495
>PLN02381 valyl-tRNA synthetase
Probab=21.80 E-value=1.3e+02 Score=26.48 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
+.+|++|++++++.++++.+.+..+|
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kL 1020 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKM 1020 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
No 496
>KOG4643|consensus
Probab=21.74 E-value=6.3e+02 Score=23.17 Aligned_cols=74 Identities=24% Similarity=0.351 Sum_probs=0.0
Q ss_pred CchhhHHhhcchhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14231 2 KDGEVYKLIGPILVKQE--MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA 75 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd--~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~~ 75 (75)
++...|+.-|-+-++.. +..-.+.+++.+-.+..|++.--..+-++...++.+..++.+|+++.+..+..+-||
T Consensus 156 s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra 231 (1195)
T KOG4643|consen 156 SGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRA 231 (1195)
T ss_pred cCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 497
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.70 E-value=3.6e+02 Score=20.29 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.+.+-...+++-.+-+..||..++.....+..+++........++.++.+...
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~ 113 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE 113 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.65 E-value=3.1e+02 Score=19.59 Aligned_cols=66 Identities=9% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 9 LIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 9 lvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
+.|+.-.+..+.-...++..-+.--.+-+.....++..++.....+...+..|+.+...+...+..
T Consensus 12 ~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~ 77 (264)
T PF06008_consen 12 LTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQ 77 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=21.59 E-value=1.5e+02 Score=18.25 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCchhhHHhhcc----hhhhc-cHHHHHHHHHHHHHHHHHHHHH
Q psy14231 1 MKDGEVYKLIGP----ILVKQ-EMEEAKQNVKKRIDYISAELKR 39 (75)
Q Consensus 1 ~~da~VYKlvGp----vLvkq-d~~ea~~~v~kRlE~I~~Eikr 39 (75)
++|+..|..+++ .+... +.+.+...+.+.+.+++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~ 59 (115)
T cd03196 16 ENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQ 59 (115)
T ss_pred HcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHcc
No 500
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=21.52 E-value=33 Score=28.39 Aligned_cols=58 Identities=12% Similarity=0.251 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
+..-.....++.+++.|-|.+|+..+|.||..++++.++....+-..|.++=-++...
T Consensus 376 it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~ 433 (550)
T PF00509_consen 376 ITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQ 433 (550)
T ss_dssp HHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccc
Done!