Query psy14231
Match_columns 75
No_of_seqs 107 out of 314
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:46:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_A Prefoldin; archaeal pro 99.5 5.9E-15 2E-19 92.4 4.1 57 2-58 46-102 (107)
2 2zqm_A Prefoldin beta subunit 99.5 2.3E-14 7.7E-19 90.8 5.3 60 2-61 51-110 (117)
3 2zdi_C Prefoldin subunit alpha 98.5 1.1E-07 3.8E-12 63.0 3.5 63 4-66 80-143 (151)
4 1fxk_C Protein (prefoldin); ar 98.4 4.4E-07 1.5E-11 58.5 5.8 63 3-72 69-132 (133)
5 2zqm_A Prefoldin beta subunit 94.9 0.075 2.5E-06 32.6 5.6 47 26-72 68-114 (117)
6 2pnv_A Small conductance calci 93.9 0.11 3.6E-06 28.5 4.1 32 21-59 9-40 (43)
7 1wt6_A Myotonin-protein kinase 93.8 0.46 1.6E-05 29.2 7.3 54 21-74 24-77 (81)
8 1fxk_A Prefoldin; archaeal pro 92.4 0.2 7E-06 30.2 4.2 43 26-68 63-105 (107)
9 3a7p_A Autophagy protein 16; c 90.3 2.3 7.9E-05 28.7 8.1 56 6-66 51-113 (152)
10 3mq7_A Bone marrow stromal ant 89.8 2.5 8.5E-05 27.6 7.7 50 17-66 60-109 (121)
11 3aei_A Prefoldin beta subunit 89.5 0.33 1.1E-05 30.3 3.2 50 3-53 43-93 (99)
12 2zdi_C Prefoldin subunit alpha 89.3 1.2 4.2E-05 28.7 6.1 50 24-73 94-143 (151)
13 2l5g_B Putative uncharacterize 86.4 1.4 4.8E-05 24.0 4.1 31 26-56 7-37 (42)
14 3nmd_A CGMP dependent protein 86.3 3.1 0.00011 24.8 6.0 48 19-70 21-68 (72)
15 3efg_A Protein SLYX homolog; x 86.2 3.7 0.00013 24.4 7.4 49 17-65 10-58 (78)
16 3ghg_A Fibrinogen alpha chain; 86.0 3.2 0.00011 33.1 7.6 45 24-68 113-157 (562)
17 3htk_A Structural maintenance 85.6 3 0.0001 22.8 7.6 48 19-66 10-57 (60)
18 3na7_A HP0958; flagellar bioge 85.6 5.1 0.00017 27.8 7.8 47 19-65 37-83 (256)
19 1k1f_A Breakpoint cluster regi 84.6 3.4 0.00012 24.7 5.5 36 30-65 28-63 (72)
20 3oja_B Anopheles plasmodium-re 83.3 7 0.00024 29.2 8.1 34 35-68 544-577 (597)
21 1ic2_A Tropomyosin alpha chain 82.5 5.5 0.00019 23.4 7.4 42 27-68 33-74 (81)
22 3na7_A HP0958; flagellar bioge 82.3 7.3 0.00025 26.9 7.5 48 17-64 14-61 (256)
23 3oja_B Anopheles plasmodium-re 81.6 11 0.00037 28.1 8.6 47 17-63 505-551 (597)
24 2yko_A LINE-1 ORF1P; RNA-bindi 81.5 4.9 0.00017 28.7 6.4 41 18-58 10-50 (233)
25 1jcd_A Major outer membrane li 79.9 5.4 0.00018 22.3 5.0 39 37-75 6-44 (52)
26 3trt_A Vimentin; cytoskeleton, 79.6 6.6 0.00023 22.4 7.9 55 14-68 21-75 (77)
27 1l8d_A DNA double-strand break 79.2 8.1 0.00028 23.2 7.1 38 29-66 65-102 (112)
28 1lwu_C Fibrinogen gamma chain; 78.2 13 0.00045 27.3 8.0 35 34-68 18-52 (323)
29 1gmj_A ATPase inhibitor; coile 78.2 9.4 0.00032 23.4 6.6 37 23-62 42-78 (84)
30 2yny_A General control protein 77.7 9.6 0.00033 24.2 6.2 39 18-56 66-104 (106)
31 2l5g_B Putative uncharacterize 76.9 6.2 0.00021 21.3 4.4 28 36-63 10-37 (42)
32 1lwu_C Fibrinogen gamma chain; 75.9 10 0.00035 27.9 6.8 39 26-64 17-55 (323)
33 1zxa_A CGMP-dependent protein 75.7 5.7 0.00019 23.3 4.4 35 35-69 18-52 (67)
34 3q0x_A Centriole protein; cent 75.6 18 0.00062 25.5 7.8 53 14-66 157-209 (228)
35 2xdj_A Uncharacterized protein 74.5 11 0.00039 22.6 6.5 45 22-66 21-65 (83)
36 3mtu_E Head morphogenesis prot 74.1 12 0.00041 22.6 7.8 58 5-69 14-71 (77)
37 1i84_S Smooth muscle myosin he 74.0 6.7 0.00023 32.7 6.0 60 6-65 842-901 (1184)
38 1deq_A Fibrinogen (alpha chain 73.9 19 0.00066 27.5 8.0 25 16-40 55-79 (390)
39 3cvf_A Homer-3, homer protein 72.4 13 0.00045 22.3 5.8 22 40-61 32-53 (79)
40 3swy_A Cyclic nucleotide-gated 72.4 9.7 0.00033 20.8 6.7 31 40-70 10-40 (46)
41 1lrz_A FEMA, factor essential 72.2 21 0.0007 26.1 7.7 62 6-67 228-299 (426)
42 1l8d_A DNA double-strand break 72.1 13 0.00045 22.2 6.1 40 20-59 63-102 (112)
43 3hnw_A Uncharacterized protein 71.6 18 0.0006 23.4 8.6 35 33-67 94-128 (138)
44 3uux_B Mitochondrial division 70.4 25 0.00084 25.3 7.5 41 24-64 166-206 (242)
45 1fxk_C Protein (prefoldin); ar 70.3 14 0.00049 22.8 5.7 32 40-71 93-124 (133)
46 2v71_A Nuclear distribution pr 70.1 18 0.00061 24.9 6.6 53 17-69 24-83 (189)
47 2pnv_A Small conductance calci 69.8 10 0.00035 20.4 4.2 27 18-51 13-39 (43)
48 1hjb_A Ccaat/enhancer binding 69.4 14 0.00046 22.5 5.3 41 24-64 39-79 (87)
49 4dzo_A Mitotic spindle assembl 68.4 17 0.00057 23.2 5.8 37 34-70 3-39 (123)
50 3hnw_A Uncharacterized protein 68.3 21 0.00073 23.0 8.7 48 24-71 78-125 (138)
51 2aze_B Transcription factor E2 67.4 13 0.00044 23.1 5.0 38 25-62 3-40 (106)
52 1lwu_B Fibrinogen beta chain; 67.3 13 0.00043 27.3 5.6 49 21-69 6-55 (323)
53 3u1c_A Tropomyosin alpha-1 cha 67.0 19 0.00064 21.9 8.2 37 29-65 38-74 (101)
54 1gmj_A ATPase inhibitor; coile 66.6 19 0.00066 21.9 6.0 32 22-53 45-76 (84)
55 3nmd_A CGMP dependent protein 66.2 12 0.00042 22.2 4.5 24 40-63 45-68 (72)
56 3swf_A CGMP-gated cation chann 65.5 19 0.00065 21.5 6.6 30 40-69 12-41 (74)
57 4dci_A Uncharacterized protein 65.0 27 0.00094 23.1 8.0 39 14-52 22-60 (150)
58 2lw1_A ABC transporter ATP-bin 64.4 19 0.00066 21.2 6.6 21 25-45 26-46 (89)
59 2z5i_A TM, general control pro 64.2 16 0.00054 20.1 6.2 42 28-69 5-46 (52)
60 2yy0_A C-MYC-binding protein; 63.9 16 0.00055 20.1 5.1 30 36-65 20-49 (53)
61 3e7k_A TRPM7 channel; coiled-c 63.9 18 0.00061 20.6 5.3 27 24-50 19-45 (56)
62 3u06_A Protein claret segregat 63.3 44 0.0015 24.9 8.1 51 18-68 7-57 (412)
63 3q0x_A Centriole protein; cent 63.2 36 0.0012 23.9 8.4 58 11-68 161-218 (228)
64 3azd_A Short alpha-tropomyosin 62.9 2.2 7.6E-05 22.2 0.6 30 35-64 4-33 (37)
65 2dq0_A Seryl-tRNA synthetase; 61.8 28 0.00094 26.3 6.8 54 14-67 6-63 (455)
66 3gnl_A Uncharacterized protein 60.7 19 0.00065 25.1 5.4 53 7-66 174-229 (244)
67 2q6q_A Spindle POLE BODY compo 60.1 25 0.00084 21.0 7.5 46 14-64 1-46 (74)
68 2yo3_A General control protein 60.0 47 0.0016 24.1 8.2 50 18-67 206-255 (268)
69 1gax_A Valrs, valyl-tRNA synth 59.5 31 0.0011 28.1 7.1 36 11-46 790-825 (862)
70 2lw1_A ABC transporter ATP-bin 59.0 17 0.00058 21.4 4.3 26 27-52 21-46 (89)
71 3m9b_A Proteasome-associated A 58.7 17 0.00057 26.2 4.8 42 29-70 55-96 (251)
72 3qne_A Seryl-tRNA synthetase, 58.6 38 0.0013 26.2 7.1 54 14-67 6-65 (485)
73 1wle_A Seryl-tRNA synthetase; 58.1 51 0.0017 25.4 7.7 55 14-68 45-103 (501)
74 2khk_A ATP synthase subunit B; 57.5 11 0.00038 19.8 2.9 39 26-64 4-42 (53)
75 3gp4_A Transcriptional regulat 57.5 33 0.0011 21.6 6.9 41 19-59 79-119 (142)
76 2b9c_A Striated-muscle alpha t 57.4 37 0.0013 22.1 8.3 52 19-70 71-122 (147)
77 3o0z_A RHO-associated protein 57.2 42 0.0014 22.7 7.4 44 20-63 89-132 (168)
78 3cvf_A Homer-3, homer protein 57.2 29 0.00098 20.8 6.4 48 23-70 8-55 (79)
79 3m9b_A Proteasome-associated A 56.5 18 0.00061 26.0 4.7 39 24-62 57-95 (251)
80 3mq9_A Bone marrow stromal ant 56.4 31 0.0011 25.1 6.1 11 15-25 402-412 (471)
81 3c9i_A Tail needle protein GP2 56.3 52 0.0018 23.5 7.2 40 23-62 107-146 (242)
82 3ghg_A Fibrinogen alpha chain; 55.9 76 0.0026 25.3 8.7 22 19-40 55-76 (562)
83 1t2k_D Cyclic-AMP-dependent tr 55.8 24 0.00081 19.4 6.5 27 40-66 27-53 (61)
84 3gpv_A Transcriptional regulat 55.3 25 0.00084 22.3 4.8 38 26-63 93-130 (148)
85 2yko_A LINE-1 ORF1P; RNA-bindi 54.8 53 0.0018 23.3 6.9 44 26-69 4-47 (233)
86 1deq_A Fibrinogen (alpha chain 54.3 59 0.002 24.8 7.4 45 21-65 113-157 (390)
87 3i00_A HIP-I, huntingtin-inter 54.0 39 0.0013 21.4 7.6 49 15-66 9-57 (120)
88 3t97_B Nuclear pore complex pr 53.8 30 0.001 20.1 7.2 42 27-68 9-50 (65)
89 3gp4_A Transcriptional regulat 53.8 39 0.0013 21.3 8.2 41 25-65 78-118 (142)
90 3osx_A 60 kDa chaperonin; alph 52.9 18 0.00063 25.2 4.1 36 23-63 161-196 (201)
91 3cve_A Homer protein homolog 1 52.2 34 0.0012 20.1 6.4 23 40-62 26-48 (72)
92 1jnm_A Proto-oncogene C-JUN; B 51.6 29 0.00098 19.1 4.2 27 40-66 27-53 (62)
93 3cve_A Homer protein homolog 1 51.4 35 0.0012 20.1 7.6 45 26-70 5-49 (72)
94 4etp_A Kinesin-like protein KA 51.1 72 0.0025 23.6 8.3 46 23-68 12-57 (403)
95 3m6c_A 60 kDa chaperonin 1; ch 50.6 21 0.00072 24.7 4.1 36 23-63 154-189 (194)
96 1m1j_C Fibrinogen gamma chain; 50.5 79 0.0027 23.9 7.9 38 30-67 86-123 (409)
97 2yny_A General control protein 50.4 26 0.00088 22.2 4.2 41 6-48 63-103 (106)
98 2dq3_A Seryl-tRNA synthetase; 50.2 35 0.0012 25.4 5.6 53 14-66 6-61 (425)
99 3swf_A CGMP-gated cation chann 49.5 39 0.0013 20.1 5.1 21 47-67 30-50 (74)
100 3gpv_A Transcriptional regulat 49.3 41 0.0014 21.3 5.2 38 19-56 93-130 (148)
101 4dyl_A Tyrosine-protein kinase 49.1 63 0.0021 23.6 6.7 43 28-70 302-344 (406)
102 2ve7_A Kinetochore protein HEC 49.1 30 0.001 24.8 5.0 39 24-62 174-212 (315)
103 1gd2_E Transcription factor PA 47.6 39 0.0013 19.6 5.7 27 40-66 41-67 (70)
104 2wuj_A Septum site-determining 47.1 34 0.0012 18.7 4.2 31 25-55 24-54 (57)
105 1ic2_A Tropomyosin alpha chain 47.1 40 0.0014 19.5 7.5 28 41-68 40-67 (81)
106 3oa7_A Head morphogenesis prot 47.0 72 0.0024 22.4 7.1 57 5-68 14-70 (206)
107 3vkg_A Dynein heavy chain, cyt 46.6 82 0.0028 29.9 8.2 32 33-64 2033-2064(3245)
108 1fzc_C Fibrin; blood coagulati 46.5 13 0.00044 27.3 2.6 8 45-52 28-35 (319)
109 1gk4_A Vimentin; intermediate 46.3 42 0.0015 19.6 8.1 51 18-71 12-62 (84)
110 3vkg_A Dynein heavy chain, cyt 46.1 68 0.0023 30.4 7.6 43 29-71 2015-2057(3245)
111 2aze_B Transcription factor E2 46.0 46 0.0016 20.5 4.9 36 34-69 5-40 (106)
112 1ses_A Seryl-tRNA synthetase; 46.0 44 0.0015 24.9 5.5 49 14-62 6-55 (421)
113 3b5n_C Protein transport prote 45.9 42 0.0014 19.4 4.8 30 20-49 39-68 (70)
114 3swy_A Cyclic nucleotide-gated 45.6 35 0.0012 18.4 5.4 28 41-68 4-31 (46)
115 1gu4_A CAAT/enhancer binding p 45.5 29 0.001 20.5 3.7 31 25-55 40-70 (78)
116 3u06_A Protein claret segregat 45.3 61 0.0021 24.2 6.3 37 31-67 6-42 (412)
117 2wg5_A General control protein 45.3 22 0.00074 21.9 3.2 24 39-62 11-34 (109)
118 3nk4_C ZONA pellucida 3; ferti 45.0 2.8 9.4E-05 20.9 -0.8 10 9-18 15-24 (30)
119 2ap3_A Conserved hypothetical 44.8 37 0.0012 23.5 4.6 31 15-45 64-94 (199)
120 3viq_B Mating-type switching p 43.9 23 0.0008 21.5 3.1 22 26-47 6-27 (85)
121 1m1j_A Fibrinogen alpha subuni 43.3 1.2E+02 0.0041 23.8 8.7 42 23-64 113-154 (491)
122 3rrk_A V-type ATPase 116 kDa s 43.1 83 0.0028 22.1 6.4 28 37-64 101-128 (357)
123 3tnu_A Keratin, type I cytoske 43.0 19 0.00066 22.6 2.8 27 25-51 42-68 (131)
124 4ani_A Protein GRPE; chaperone 42.8 74 0.0025 22.0 6.0 27 39-65 63-89 (213)
125 1g6u_A Domain swapped dimer; d 42.0 41 0.0014 18.1 4.3 29 32-60 17-45 (48)
126 1lrz_A FEMA, factor essential 42.0 53 0.0018 23.8 5.4 43 25-67 244-292 (426)
127 2l3l_A Tubulin-specific chaper 41.9 61 0.0021 20.1 5.5 48 27-74 57-109 (111)
128 1m1j_A Fibrinogen alpha subuni 41.5 1.3E+02 0.0043 23.7 8.4 32 38-69 114-145 (491)
129 3tnu_A Keratin, type I cytoske 41.2 64 0.0022 20.1 8.1 34 36-69 78-111 (131)
130 3s9g_A Protein hexim1; cyclin 41.1 66 0.0023 20.3 8.7 54 16-69 32-85 (104)
131 4b4t_K 26S protease regulatory 40.9 64 0.0022 24.1 5.8 38 29-66 50-87 (428)
132 2ocy_A RAB guanine nucleotide 40.7 20 0.00068 23.9 2.7 21 45-65 118-138 (154)
133 1wt6_A Myotonin-protein kinase 40.4 60 0.002 19.6 7.3 30 34-63 44-73 (81)
134 2xz3_A Maltose ABC transporter 40.4 1E+02 0.0035 22.2 8.3 52 17-70 356-407 (463)
135 1nkp_B MAX protein, MYC proto- 40.1 52 0.0018 18.8 6.4 40 24-67 40-79 (83)
136 1n7s_C SNAP-25A; neuronal snar 40.0 44 0.0015 19.5 3.9 29 20-48 50-78 (79)
137 1x8y_A Lamin A/C; structural p 39.5 58 0.002 19.1 8.3 51 18-71 14-64 (86)
138 4etp_A Kinesin-like protein KA 39.3 1.1E+02 0.0039 22.5 8.1 37 26-62 8-44 (403)
139 4b4t_M 26S protease regulatory 39.1 43 0.0015 25.1 4.6 42 25-66 29-70 (434)
140 2fxo_A Myosin heavy chain, car 38.7 70 0.0024 19.9 8.8 57 12-68 4-60 (129)
141 3lss_A Seryl-tRNA synthetase; 38.6 1.3E+02 0.0045 23.1 7.3 61 10-70 8-72 (484)
142 3tnu_B Keratin, type II cytosk 37.4 73 0.0025 19.7 8.1 25 25-49 40-64 (129)
143 2w83_C C-JUN-amino-terminal ki 37.2 67 0.0023 19.2 5.8 48 19-66 28-75 (77)
144 2j69_A Bacterial dynamin-like 36.3 96 0.0033 24.3 6.3 50 20-69 344-393 (695)
145 3efg_A Protein SLYX homolog; x 36.2 65 0.0022 18.8 6.3 47 24-70 10-56 (78)
146 2lw9_A Unconventionnal myosin- 36.1 57 0.0019 18.1 3.7 24 35-58 6-29 (51)
147 3hh0_A Transcriptional regulat 35.7 82 0.0028 19.8 5.2 34 19-52 78-111 (146)
148 3rrk_A V-type ATPase 116 kDa s 35.7 1.1E+02 0.0038 21.4 9.0 33 18-50 223-255 (357)
149 3vbb_A Seryl-tRNA synthetase, 35.5 1.2E+02 0.0041 23.6 6.7 59 12-70 5-69 (522)
150 2dgc_A Protein (GCN4); basic d 35.2 60 0.0021 18.1 4.3 27 39-65 34-60 (63)
151 3lec_A NADB-rossmann superfami 34.8 57 0.002 22.3 4.4 35 7-48 172-206 (230)
152 2xv5_A Lamin-A/C; structural p 34.6 69 0.0024 18.6 6.5 38 34-71 4-41 (74)
153 2efr_A General control protein 34.5 99 0.0034 20.4 8.5 44 25-68 88-131 (155)
154 3kr9_A SAM-dependent methyltra 33.7 59 0.002 22.1 4.3 34 8-48 167-200 (225)
155 3u59_A Tropomyosin beta chain; 33.6 78 0.0027 18.9 8.3 36 30-65 39-74 (101)
156 3twe_A Alpha4H; unknown functi 33.5 44 0.0015 16.1 3.7 17 49-65 8-24 (27)
157 1m1j_C Fibrinogen gamma chain; 33.4 1.5E+02 0.0053 22.3 7.3 36 34-69 97-132 (409)
158 1m1j_B Fibrinogen beta chain; 33.0 1.7E+02 0.0057 22.6 8.4 26 42-67 168-193 (464)
159 4abm_A Charged multivesicular 33.0 75 0.0026 18.6 5.8 15 24-38 16-30 (79)
160 2dfs_A Myosin-5A; myosin-V, in 32.9 2.2E+02 0.0075 23.9 8.9 7 44-50 986-992 (1080)
161 1aq5_A Matrilin-1, CMP, cartil 32.7 63 0.0022 17.6 4.3 12 21-32 23-34 (47)
162 4gkw_A Spindle assembly abnorm 32.6 93 0.0032 20.8 4.9 15 54-68 65-79 (167)
163 4a9a_A Ribosome-interacting GT 32.5 32 0.0011 25.3 2.9 42 23-65 8-49 (376)
164 2a26_A Calcyclin-binding prote 32.5 58 0.002 17.7 3.3 18 30-47 29-46 (50)
165 3k29_A Putative uncharacterize 32.4 1.2E+02 0.004 20.6 7.1 60 6-65 4-64 (169)
166 2oqq_A Transcription factor HY 31.7 63 0.0022 17.3 5.6 27 40-66 8-34 (42)
167 3ra3_A P1C; coiled coil domain 31.6 40 0.0014 16.3 2.3 20 41-60 6-25 (28)
168 2p4w_A Transcriptional regulat 31.5 1.1E+02 0.0039 20.2 8.3 49 18-66 119-167 (202)
169 3a7o_A Autophagy protein 16; c 31.5 84 0.0029 18.7 6.9 54 9-62 4-59 (75)
170 1go4_E MAD1 (mitotic arrest de 31.4 95 0.0032 19.2 5.5 33 21-53 12-44 (100)
171 1q08_A Zn(II)-responsive regul 31.1 76 0.0026 18.0 5.5 24 28-51 39-62 (99)
172 1cii_A Colicin IA; bacteriocin 31.0 2E+02 0.0069 22.9 8.0 45 23-67 351-395 (602)
173 1fzc_C Fibrin; blood coagulati 30.9 56 0.0019 23.9 3.9 26 40-65 16-41 (319)
174 1r8d_A Transcription activator 30.7 74 0.0025 18.7 3.9 13 49-61 82-94 (109)
175 2zvf_A Alanyl-tRNA synthetase; 30.3 96 0.0033 19.4 4.6 24 25-48 29-52 (171)
176 1x79_B RAB GTPase binding effe 30.3 1.1E+02 0.0036 19.4 8.8 53 20-72 30-82 (112)
177 3m6j_A Uncharacterized protein 29.9 27 0.00092 23.3 1.9 34 6-39 15-49 (145)
178 2akf_A Coronin-1A; coiled coil 29.8 58 0.002 16.3 4.1 7 53-59 17-23 (32)
179 1dh3_A Transcription factor CR 29.2 74 0.0025 17.3 5.2 28 37-64 24-51 (55)
180 1ci6_A Transcription factor AT 29.1 78 0.0027 17.5 6.7 27 40-66 28-54 (63)
181 4b4t_J 26S protease regulatory 29.0 1.4E+02 0.0048 22.3 6.0 41 26-66 23-63 (405)
182 1avy_A Fibritin, gpwac M; bact 29.0 94 0.0032 18.4 5.3 33 37-69 10-42 (74)
183 1rtm_1 Mannose-binding protein 28.2 86 0.0029 18.8 4.0 19 44-62 6-24 (149)
184 1s94_A S-syntaxin; three helix 28.0 1.2E+02 0.0041 19.4 7.9 28 16-43 80-107 (180)
185 1r8e_A Multidrug-efflux transp 28.0 1.3E+02 0.0046 19.8 6.0 12 40-51 91-102 (278)
186 1l4a_C S-SNAP25 fusion protein 27.8 28 0.00095 20.8 1.6 29 20-48 54-82 (83)
187 3qwe_A GMIP, GEM-interacting p 27.8 1.5E+02 0.0052 21.2 5.7 53 17-69 101-153 (279)
188 2wt7_A Proto-oncogene protein 27.8 81 0.0028 17.3 6.7 29 40-68 28-56 (63)
189 1nhl_A Synaptosomal-associated 27.5 77 0.0026 17.0 3.6 27 20-46 27-53 (54)
190 1zxa_A CGMP-dependent protein 27.5 94 0.0032 17.9 4.3 40 19-58 16-55 (67)
191 3bas_A Myosin heavy chain, str 27.4 98 0.0034 18.2 8.2 53 12-64 5-57 (89)
192 3lof_A Heat shock 70 kDa prote 27.3 1E+02 0.0034 18.2 6.1 53 11-66 31-83 (113)
193 3mq9_A Bone marrow stromal ant 27.2 1.8E+02 0.006 21.0 8.4 26 10-35 361-387 (471)
194 4b4t_K 26S protease regulatory 27.1 1.7E+02 0.0058 21.8 6.1 40 23-62 51-90 (428)
195 3u1c_A Tropomyosin alpha-1 cha 26.6 1.1E+02 0.0037 18.4 8.9 28 26-53 49-76 (101)
196 1nlw_A MAD protein, MAX dimeri 26.5 99 0.0034 17.9 5.5 39 24-66 40-78 (80)
197 1nkp_A C-MYC, MYC proto-oncoge 26.4 1E+02 0.0035 18.1 6.5 40 24-67 45-84 (88)
198 1t3j_A Mitofusin 1; coiled coi 26.1 1.2E+02 0.0041 18.7 8.1 44 19-66 45-88 (96)
199 1cxz_B Protein (PKN); protein- 26.0 87 0.003 18.9 3.6 17 23-39 20-36 (86)
200 3u0c_A Invasin IPAB, 62 kDa an 25.8 1.4E+02 0.0047 20.7 5.0 24 38-61 120-143 (201)
201 2w6a_A ARF GTPase-activating p 25.7 1E+02 0.0035 17.7 6.7 32 40-71 25-56 (63)
202 4fla_A Regulation of nuclear P 25.7 1.4E+02 0.0048 19.4 7.8 20 20-39 78-97 (152)
203 3qao_A LMO0526 protein, MERR-l 25.2 1E+02 0.0036 21.1 4.4 30 23-52 78-107 (249)
204 3oja_A Leucine-rich immune mol 25.0 2E+02 0.0067 20.8 8.9 14 47-60 454-467 (487)
205 2er8_A Regulatory protein Leu3 24.8 51 0.0017 17.8 2.3 6 40-45 61-66 (72)
206 4b4t_M 26S protease regulatory 24.6 69 0.0024 24.0 3.6 38 25-62 36-73 (434)
207 3w03_C DNA repair protein XRCC 24.5 1.7E+02 0.0058 19.9 6.0 32 40-71 150-181 (184)
208 2c0g_A ERP29 homolog, windbeut 24.3 1.2E+02 0.0041 20.7 4.6 33 30-62 197-231 (248)
209 1slq_A VP4; beta sandwich, gre 23.9 77 0.0026 23.0 3.5 21 45-65 245-265 (278)
210 2xu6_A MDV1 coiled coil; prote 23.6 1.2E+02 0.0041 17.8 5.9 35 29-63 15-49 (72)
211 3iot_A Maltose-binding protein 23.5 1.3E+02 0.0043 21.3 4.7 23 11-33 348-371 (449)
212 1buu_A Protein (mannose-bindin 23.4 1.1E+02 0.0039 18.8 4.0 18 44-61 25-42 (168)
213 3t97_C Nuclear pore glycoprote 22.8 52 0.0018 18.8 2.0 33 21-53 26-58 (64)
214 1ez3_A Syntaxin-1A; three heli 21.9 1.3E+02 0.0046 17.7 8.7 29 15-43 48-76 (127)
215 2y3w_A SAS6, spindle assembly 21.9 1E+02 0.0034 20.5 3.6 37 14-50 144-180 (182)
216 2e7s_A RAB guanine nucleotide 21.7 38 0.0013 22.2 1.5 24 24-47 99-122 (135)
217 1m1j_B Fibrinogen beta chain; 21.2 2.8E+02 0.0097 21.3 8.8 33 35-67 128-160 (464)
218 3mov_A Lamin-B1; LMNB1, B-type 20.9 1.5E+02 0.005 17.8 7.8 35 36-70 38-72 (95)
219 3a7p_A Autophagy protein 16; c 20.0 2E+02 0.0069 19.1 7.9 26 31-56 99-124 (152)
No 1
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.53 E-value=5.9e-15 Score=92.40 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=45.7
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
+|++||++||||||++|.++|..+|++|+++|+.+|++++..+..+++++..++..|
T Consensus 46 ~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 46 DDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999977666666666666655555555444
No 2
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.50 E-value=2.3e-14 Score=90.76 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=46.3
Q ss_pred CchhhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 2 ~da~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
+|++||++||||||++|.++|..+|++|+++|..+|++++..+..++++...++..|.++
T Consensus 51 ~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 51 DDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999966666666666655555555555444443
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=98.45 E-value=1.1e-07 Score=62.96 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=52.1
Q ss_pred hhhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 4 GEVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 4 a~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++||=.+| +++|..+.+||...+++|+++++..+++++..+..+..+...+...+.++++.++
T Consensus 80 ~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 80 NNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred CEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555577 8999999999999999999998888888888888888888888888877776544
No 4
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=98.42 E-value=4.4e-07 Score=58.55 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=53.8
Q ss_pred chhhHHhhc-chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 3 DGEVYKLIG-PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 3 da~VYKlvG-pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
.++||-.+| +++|..+.++|..-+++|+++ ++.+++.+++++..+++++..++..+++++++.
T Consensus 69 ~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~-------l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 69 TSEVIMSVGAGVAIKKNFEDAMESIKSQKNE-------LESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp TTEEEEEEETTEEEEEEHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCEEEEeeHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356999999 699999999999999999999 777788888888888888888888888777654
No 5
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=94.87 E-value=0.075 Score=32.63 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
+++=++.++..++.++..+++++++.+.+++++.+++.++++.+++.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~ 114 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPP 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44556778889999999999999999999999999999999988653
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=93.91 E-value=0.11 Score=28.49 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
|..+++..|-|- +|+||..++.+++.+...|.
T Consensus 9 dlvsel~~r~e~-------LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 9 DMISDLNERSED-------FEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 566888888888 88888888888777776665
No 7
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=93.81 E-value=0.46 Score=29.20 Aligned_cols=54 Identities=11% Similarity=0.249 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
-|++.|.+.+.-+++.....+.++++.+.+-..+..++..+..++......+.+
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~~~ 77 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAEGAT 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 477888888998998888889999999999999988888888888876554443
No 8
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=92.35 E-value=0.2 Score=30.22 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+++=++.++..++.++..|++++++.+.+++++.+++.++++.
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778889999999999999999999999999988764
No 9
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.30 E-value=2.3 Score=28.67 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTK-------QDTHRENLTKLQQQFQ 66 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q-------~e~~~~~l~~lQ~~~q 66 (75)
+.++.||=+|.++..+ ...+.-+++|+..++.++.+++.. .+.+++++..||-++.
T Consensus 51 ~~~~~~~~~vs~~~~~-----~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 51 NSGAIGGNIVSHDDAL-----LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp ------CHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCcccccchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788788888544 346777777888788887777744 4455555555554443
No 10
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.81 E-value=2.5 Score=27.60 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
-++++-++-..++++...+||+.+.-.+++...+.++++.....++..+.
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 34444445557789999999999999999999999999998887776554
No 11
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=89.49 E-value=0.33 Score=30.31 Aligned_cols=50 Identities=16% Similarity=0.385 Sum_probs=36.9
Q ss_pred chhhHHhhcchhhhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 3 DGEVYKLIGPILVKQEMEEAKQNVKK-RIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 3 da~VYKlvGpvLvkqd~~ea~~~v~k-RlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
+..+|.....+||.-++|||...++. |+-| ..||+++..+-+.+-.++.+
T Consensus 43 er~~yraf~dllveitkdeaiehier~rl~y-kreie~l~~~ekeime~ls~ 93 (99)
T 3aei_A 43 ERRIYRAFSDLLVEITKDEAIEHIERSRLVY-KREIEKLKKREKEIMEELSK 93 (99)
T ss_dssp CCCEEEEETTEEEEECHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999875 5555 67777776665554444433
No 12
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=89.30 E-value=1.2 Score=28.69 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKM 73 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~ 73 (75)
.++++=++|++.=++.++..++.+++.+..+++++..++..+++.++..+
T Consensus 94 ~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 94 RSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677789999999999999999999999999999999999998887543
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=86.43 E-value=1.4 Score=23.97 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
+=..++-|..||.+.+.+|..+++++..+.+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677777777777777666655543
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.30 E-value=3.1 Score=24.83 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..+.+..+.+|.+ ||...+.+|.++++.+......+.+||.++-...+
T Consensus 21 i~eLq~~L~~K~e----ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIE----ELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666655 46667888888888888888888888887765443
No 15
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=86.22 E-value=3.7 Score=24.40 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.++++-...++-|+-|-..=|..+...+..-++++.+++.++.-|-.++
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888444444444444444444444444444444433
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.01 E-value=3.2 Score=33.07 Aligned_cols=45 Identities=11% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.+|++|+.||+-+|...-.+|+.|+.-++.++.+|.+|...+.-.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999888999999999999999988887665543
No 17
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=85.63 E-value=3 Score=22.82 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+++-....+.+...+.+++......+..+.+.++..++.+.+++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555677788888888888888888888888888888877654
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.59 E-value=5.1 Score=27.76 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+.+....+..+++-+..+++.++..++.++......+.++.+.+.++
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555444
No 19
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=84.59 E-value=3.4 Score=24.66 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+..|+.|+.+|...|..++.+.++.+=.+.=||.=+
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlL 63 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567899999999999999999999998888887644
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.26 E-value=7 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.|+.+++.+++...++...++.++..+-+++++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443344333
No 21
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.54 E-value=5.5 Score=23.36 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
++|.+-...||..+..++..++...++..+.+...+.++..+
T Consensus 33 e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 33 EERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777777777777666543
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.26 E-value=7.3 Score=26.94 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
|+.|.-...+..++.-+-.||..++..+..+.......+..+..+..+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~ 61 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQ 61 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444555554444444444444444444444433
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.58 E-value=11 Score=28.11 Aligned_cols=47 Identities=9% Similarity=0.170 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
+...+....+..|...+..++.+.+..++...++.+.++.+..++..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 44556666667777776666666666664444444444444443333
No 24
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=81.52 E-value=4.9 Score=28.69 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
|.+|-.+++++|++-|+......+++++.++..+.++.+.+
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677778888888877777777777777776666666544
No 25
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=79.88 E-value=5.4 Score=22.28 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14231 37 LKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAKMRA 75 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~~~~ 75 (75)
+..+...+.+|..|...+...+..++..++.+...+.||
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666667777777777666655553
No 26
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=79.61 E-value=6.6 Score=22.43 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=39.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
++..++.||..--..+++-++....+-...+......+..++-.+..|+.+++..
T Consensus 21 ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 21 VAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677777777777777777777777777777777777777777777776654
No 27
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=79.23 E-value=8.1 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.++.+..++..+...+..+..+...+...+..+..++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666556655555544
No 28
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=78.24 E-value=13 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+.-|.+.+.+|..++..++.++.+|.+|+.++.+.
T Consensus 18 e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555555444433
No 29
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=78.17 E-value=9.4 Score=23.35 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
..+|.+++ ..||+.-...|+.+++++++++..|.+|-
T Consensus 42 L~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 42 LAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455444 44566667777777777777777776664
No 30
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=77.67 E-value=9.6 Score=24.22 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
+-.+|..+|+.++.-|++.|..+..++..++.++.+.++
T Consensus 66 nVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 66 NVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788889999999888888888888888777776653
No 31
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=76.89 E-value=6.2 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
-|.|++.-|...++++..+++++.+|..
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777766666666553
No 32
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=75.88 E-value=10 Score=27.93 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
++..+--...+|..++..+..++.++..++.++.+|...
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555543
No 33
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=75.67 E-value=5.7 Score=23.31 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
..|+.-+.+|.+++..+......+..|+.++.+..
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666555443
No 34
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=75.56 E-value=18 Score=25.49 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=30.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+.+.+-+..+..+..|+..+++++.-++..+.+.+.+...++..+++..+++.
T Consensus 157 f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~ 209 (228)
T 3q0x_A 157 FRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLA 209 (228)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666655665555555555555555555444443
No 35
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=74.51 E-value=11 Score=22.55 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+...+-.+++-+..||.++-..+..+.-+++.++.+-.++...+-
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777776666666555543
No 36
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=74.05 E-value=12 Score=22.56 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=34.7
Q ss_pred hhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 5 ~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.+-|+..|-|-.....||-+.+.----. +++.|.+++.++...+.+...++..+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 14 ILNKLLDPELAQSERTEALQQLRVNYGS-------FVSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHTTCC---CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4678889999988899998887544444 455555555555555555555555554443
No 37
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=73.95 E-value=6.7 Score=32.72 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=33.4
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+|.-+.|.+-......-...++++++-+..++.+++..+..++.+...++.++..++.++
T Consensus 842 l~~klkpLl~~a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 842 LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHTTTCCCCTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677766554445545555555555555555555555555555555555555544433
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.88 E-value=19 Score=27.46 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=13.8
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRH 40 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~ 40 (75)
+..++++..+|..||+-|+.+|..+
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444555566666666666555544
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.42 E-value=13 Score=22.31 Aligned_cols=22 Identities=5% Similarity=0.253 Sum_probs=9.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~l 61 (75)
++.++.+...+.+..+.++..+
T Consensus 32 le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 32 MERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 40
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=72.39 E-value=9.7 Score=20.76 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=23.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
++..+..++.+..++-.++..-|.++.+.+.
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit 40 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLS 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777776554
No 41
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=72.24 E-value=21 Score=26.06 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=39.4
Q ss_pred hHHhhcc----hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGP----ILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT------LDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 6 VYKlvGp----vLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~------~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+|...|+ ++..-|.++..++++++++-++.++.+++..++. ..+|...+.+++..++..+..
T Consensus 228 l~~~~~~~~~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 228 RLKYYKDRVLVPLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEE 299 (426)
T ss_dssp HHHHHGGGEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454 3556789999999999999999999998654432 134444444444444444443
No 42
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.13 E-value=13 Score=22.23 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
.+.......++.-+..+|..+...+..++.....++.++.
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777888888888888777777777766
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.62 E-value=18 Score=23.42 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+..|+......+..+.++.++++.++..||.++..
T Consensus 94 lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 94 LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 44
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=70.36 E-value=25 Score=25.25 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
..+.=|...+.+||..++.+|..|...-..+-++|+.|++.
T Consensus 166 elL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqd 206 (242)
T 3uux_B 166 EFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQN 206 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555677789999999999999999999999999988853
No 45
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=70.29 E-value=14 Score=22.80 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=21.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
++.+++.++...+.+.+.+..++.++......
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777766666655443
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=70.14 E-value=18 Score=24.91 Aligned_cols=53 Identities=13% Similarity=0.272 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDY-------ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~-------I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+...++..++++=.+. ..+||.+++++.+++..+...+...+..+..+++...
T Consensus 24 q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555432222 4557777888888888888887777777766665543
No 47
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=69.83 E-value=10 Score=20.38 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
+..+-..++++|+.. +|.++.++...+
T Consensus 13 el~~r~e~LE~Ri~~-------LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVT-------LETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHH-------HHHHHHHHHHHH
Confidence 445556666677666 555555555544
No 48
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.37 E-value=14 Score=22.47 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
..+..|.++++.|-..|..+|..+..+...++.-|.++...
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 45677888888888888888888888887777777766554
No 49
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=68.42 E-value=17 Score=23.16 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..||..++..+.+.+++..++++-+.+--++++++..
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999988888887764
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.27 E-value=21 Score=23.03 Aligned_cols=48 Identities=10% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
..+...++-...||..+...+...+.+.+.+..++.+++.++......
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666667777777777777777777777777777777665543
No 51
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=67.42 E-value=13 Score=23.13 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+..|+.-++.||..++..-+.+......++..|..+-
T Consensus 3 ~~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 3 HMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777666666666666666665554
No 52
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=67.33 E-value=13 Score=27.34 Aligned_cols=49 Identities=6% Similarity=0.331 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELK-RHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eik-r~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.|...|+++.-+|+.-++ .....|..++...+.++++|.+|..++.+..
T Consensus 6 ~~~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~ 55 (323)
T 1lwu_B 6 NAQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQK 55 (323)
T ss_dssp -CHHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677666666552 4556788888888888888888888776543
No 53
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.04 E-value=19 Score=21.94 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
|.+-...||..+..+++.++...++....|...+.++
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555554444433
No 54
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=66.61 E-value=19 Score=21.92 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 22 AKQNVKKRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 22 a~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
.+..+...|++=..||++++..|....+.+..
T Consensus 45 LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 45 LKKHKENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444333
No 55
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.17 E-value=12 Score=22.17 Aligned_cols=24 Identities=13% Similarity=0.118 Sum_probs=15.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
++.++...+.....++.++.++++
T Consensus 45 LEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666666666665543
No 56
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=65.47 E-value=19 Score=21.47 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=18.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
++..+..++.+..++-.++...|+++.+.+
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666665544
No 57
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=64.98 E-value=27 Score=23.11 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=31.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
+-+..++++...+...+..+..|+..++...+.+.+...
T Consensus 22 VTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 22 VTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578999999999999999999999888877655444
No 58
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=64.37 E-value=19 Score=21.17 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIA 45 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~ 45 (75)
.|..+|+-+..+|..++..+.
T Consensus 26 ~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 59
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=64.20 E-value=16 Score=20.07 Aligned_cols=42 Identities=7% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
-|-||-+.-..++++.|.+++..+..-+.+...++..+.+.+
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 577887777888888888888888888888887777776654
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.93 E-value=16 Score=20.10 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
++..+.....+++.+.+.+..++.++.+++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555544
No 61
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=63.88 E-value=18 Score=20.58 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTK 50 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q 50 (75)
.+|++|.-||...|-.+|.++..++.=
T Consensus 19 ~Evnekv~~ik~sL~~LD~~lg~Lqdl 45 (56)
T 3e7k_A 19 KEVGDRVNYIKRSLQSLDSQIGHLQDL 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 467888888888888888777666543
No 62
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.31 E-value=44 Score=24.95 Aligned_cols=51 Identities=6% Similarity=0.062 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.+++...++.+|++.+..+++++...++.+..++-.......+|...++.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666677777666666666666666666655555555555555543
No 63
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=63.18 E-value=36 Score=23.92 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=47.5
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 11 GPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 11 GpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+.-.|++-...-...+++|+...+..+.+.....+++..+++.++..++++....-..
T Consensus 161 sde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445677777778888899999999999999999999999999999999888766543
No 64
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=62.92 E-value=2.2 Score=22.15 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+++..+...|+.++.+.+.+++++..++.+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777777666654
No 65
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=61.75 E-value=28 Score=26.35 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=38.2
Q ss_pred hhhccHHHHHHHHHHHHH-H---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRID-Y---ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE-~---I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+++.+.+..+.++.+|-. - +-.+|-.++..-..+..+.+.++.+...+.+++.+
T Consensus 6 ~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 6 LIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888853 2 23677777777777777777777777777766654
No 66
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=60.66 E-value=19 Score=25.06 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=33.0
Q ss_pred HHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHH
Q psy14231 7 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQ---DTHRENLTKLQQQFQ 66 (75)
Q Consensus 7 YKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~---e~~~~~l~~lQ~~~q 66 (75)
+-.+||.|+...-.-. .+|+..|+.+++.-+..+.+.. +....++.++..+++
T Consensus 174 ~~~~G~~l~~~~~~~~-------~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~~~ 229 (244)
T 3gnl_A 174 EIFFGPCLLKEQSAIF-------KSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIA 229 (244)
T ss_dssp HHHHCHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHhcCCHHH-------HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Confidence 3457999997655444 4566666666777777776543 234556666665544
No 67
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.08 E-value=25 Score=20.95 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=30.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
||+|++ ++...+.-=..||.|+...+.++..++.+--+--.+|+.+
T Consensus 1 lIkQNK-----eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~ 46 (74)
T 2q6q_A 1 AVQQNK-----ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQ 46 (74)
T ss_dssp --CHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 3566667777899999999999988887654443444433
No 68
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=60.03 E-value=47 Score=24.11 Aligned_cols=50 Identities=10% Similarity=0.321 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
...+|..--+.|..-|...|..++.++..+++..+++-..|.-|..+++.
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~ 255 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIAR 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788999999999999999999999998888888887777664
No 69
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=59.46 E-value=31 Score=28.12 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=29.5
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 11 GPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIAT 46 (75)
Q Consensus 11 GpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~ 46 (75)
+|+=..-|.+.....+.+.+..+.+||++++.++..
T Consensus 790 ~~~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~~l~~ 825 (862)
T 1gax_A 790 MPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLAS 825 (862)
T ss_dssp EECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEeccccCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344445688888999999999999999999988766
No 70
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.03 E-value=17 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
.+.++-|..+|..++..+..++.++.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577777777777777777777764
No 71
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=58.73 E-value=17 Score=26.16 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
|+.-...++..+..+..-+...+..++.++..|+.++....+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444445555555555555555555555555555443
No 72
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.55 E-value=38 Score=26.17 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=34.0
Q ss_pred hhhc----cHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQ----EMEEAKQNVKKRIDY--ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 14 Lvkq----d~~ea~~~v~kRlE~--I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+|+. +.+.+++++.+|-.- +-.+|-.++..-..+..+.+.++.+...+..++.+
T Consensus 6 ~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 6 AFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp GGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566 677777777777422 23566666666666666666666666666665544
No 73
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.08 E-value=51 Score=25.39 Aligned_cols=55 Identities=9% Similarity=0.000 Sum_probs=38.2
Q ss_pred hhhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDY----ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~----I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
++..+.+..+.++.+|--- .-.+|-.++.....+..+.+.++.+...+.+++.+.
T Consensus 45 ~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 45 SLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888887531 236777777777777777777777777776666553
No 74
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=57.55 E-value=11 Score=19.76 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+++|-++|.+.|...+..-...+.-.......|.+...+
T Consensus 4 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar~e 42 (53)
T 2khk_A 4 IEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAE 42 (53)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888877777776666666666655544
No 75
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=57.53 E-value=33 Score=21.64 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLT 59 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~ 59 (75)
.++...-+.++++-|..+|..++..+..+.......+..+.
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444444444444444444444444333
No 76
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=57.41 E-value=37 Score=22.12 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
-+.=...+..|+-.+.+++.|.+.+....+.+...+...|..+..++..+-.
T Consensus 71 adrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 71 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3334467889999999999999999999999999999999988888776543
No 77
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.19 E-value=42 Score=22.71 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.+...++..|+.-...|++++..++......-..+.+++..|..
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888888888888777777777776665
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.17 E-value=29 Score=20.79 Aligned_cols=48 Identities=2% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
...+..|+.-...+=..++.++.+++..++.-+.+=..++.+++.++.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544444456666666666666666666666665555443
No 79
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=56.50 E-value=18 Score=26.02 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.++...++++..-..++...++.+.+++..+++++..|+
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666677777777777777777777765
No 80
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.41 E-value=31 Score=25.05 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=4.8
Q ss_pred hhccHHHHHHH
Q psy14231 15 VKQEMEEAKQN 25 (75)
Q Consensus 15 vkqd~~ea~~~ 25 (75)
+.+.+++++.+
T Consensus 402 ~~~~~~~~~~~ 412 (471)
T 3mq9_A 402 LQQELTEAQKG 412 (471)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 44444444443
No 81
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=56.26 E-value=52 Score=23.47 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
...++-|+-.++++|.-++.++.+++.+.......+..|+
T Consensus 107 ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 107 ITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 3344444444445555555555555554444444444444
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.92 E-value=76 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRH 40 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~ 40 (75)
+++...+|.+||+-|+.+++.+
T Consensus 55 LdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.85 E-value=24 Score=19.41 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++.....++..-..++.++..|+.++.
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 84
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=55.33 E-value=25 Score=22.34 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
+..+.+.+...+..++.++..++.....+...+..++.
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444555555555555555555555554443
No 85
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=54.79 E-value=53 Score=23.29 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
++.|++-++.-|..+|.++.++...++...+.+..+...++..-
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666888888877777777777777777666543
No 86
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.28 E-value=59 Score=24.80 Aligned_cols=45 Identities=11% Similarity=0.302 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+.-.+|+.|+.||..=|..-=-+|+-|+.-++.++.+|.+|...+
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888888766554444455666666666666666555444
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.02 E-value=39 Score=21.42 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=29.4
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.+.++|.....+..=++-..+|++++- ...+.-...++..+..|+.++.
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLA 57 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888887763 2333333344444444444443
No 88
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=53.84 E-value=30 Score=20.07 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 27 KKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..|++-|..||-.+..+..+...+....+-++.+|.-.+=+.
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLsHRiLkv 50 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQV 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 468999999999999999999999999999999998655443
No 89
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=53.82 E-value=39 Score=21.31 Aligned_cols=41 Identities=7% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
++..+.+.+...+..++.++..++.....+...+...+..+
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888777777888777777777777777777666544
No 90
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=52.89 E-value=18 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
++.|+.|++.|..+|+... .+-.-++++++|.+|..
T Consensus 161 ~~~I~~Rv~qIr~qie~t~-----S~ydkEKLqERLAKLsG 196 (201)
T 3osx_A 161 EGAIAARVTQIRQQIEEST-----SDYDREKLQERVAKLAG 196 (201)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHcC
Confidence 5679999999999987643 34445778888887753
No 91
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.23 E-value=34 Score=20.14 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=9.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++.++.+...+.+..+.++..+.
T Consensus 26 le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 26 MEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 92
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.60 E-value=29 Score=19.14 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=14.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++..+..++.+-..+..++..|+.++.
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555443
No 93
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=51.41 E-value=35 Score=20.07 Aligned_cols=45 Identities=2% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+..|+.-...+=..++.++.+++..++.-+.+=..++.+++.++.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444444456666666666666666666666665555443
No 94
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=51.11 E-value=72 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..++.++.+-+..+|+.++..+.++..+..+......+|..+++.+
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444455555444444444444444444444443
No 95
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=50.63 E-value=21 Score=24.71 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
++.|+.|++.|.++|+... .+-.-++++++|.+|..
T Consensus 154 ~~~I~~Rv~qIr~~ie~t~-----s~ydkEKLqERlAkLsG 189 (194)
T 3m6c_A 154 AEAVANRAKHLRAEIDKSD-----SDWDREKLGERLAKLAG 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHcC
Confidence 5679999999999987643 34445778888887764
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.47 E-value=79 Score=23.86 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
..-+..||.+++..+...+.++..++..+..++.+++.
T Consensus 86 skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~ 123 (409)
T 1m1j_C 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQ 123 (409)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHH
Confidence 33344456666665555555555555555555544443
No 97
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=50.37 E-value=26 Score=22.20 Aligned_cols=41 Identities=17% Similarity=0.453 Sum_probs=26.7
Q ss_pred hHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 6 VYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 6 VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
.|..||..|- .++.+..++..++.-+.+.|..++..|+.+.
T Consensus 63 ~YnnVGdAl~--ald~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 63 IYNNVGSALS--ALNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp EESSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777765 4666777777777766666666666665543
No 98
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=50.19 E-value=35 Score=25.42 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=33.5
Q ss_pred hhhccHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDY-I--SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~-I--~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+++.+.+..+.++.+|-.- + -.+|-.++..-..+..+.+.++.+...+.+++.
T Consensus 6 ~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 61 (425)
T 2dq3_A 6 LIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIG 61 (425)
T ss_dssp HHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777432 2 356666666666666666666666666665543
No 99
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=49.54 E-value=39 Score=20.08 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14231 47 LDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 47 ~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+..-..+++.+|.+|..++..
T Consensus 30 y~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 30 YESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344444555566666655554
No 100
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=49.29 E-value=41 Score=21.27 Aligned_cols=38 Identities=5% Similarity=0.115 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
.++...-+..+++-|..+|..+...+..++..+...+.
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544443
No 101
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=49.13 E-value=63 Score=23.57 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
-|.++|.+-|.+++..+.++.+.....+..+..|...++....
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~ 344 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEE 344 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577888888888888888888888888888888877765543
No 102
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=49.12 E-value=30 Score=24.84 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
+.+.++...+..|+..++.....++++.+++.+....+.
T Consensus 174 ~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 174 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444455666666666666666666655544444
No 103
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.63 E-value=39 Score=19.56 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++....++...-..++..+..|+.++.
T Consensus 41 le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 41 LKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555555443
No 104
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.11 E-value=34 Score=18.73 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHR 55 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~ 55 (75)
+|+.=|+-|..++..+.....++..+...+.
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444444444443
No 105
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=47.07 E-value=40 Score=19.48 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=11.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 41 DDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 41 e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
+.-+.++++++..+...+...+..+..+
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 106
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=46.95 E-value=72 Score=22.36 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=36.5
Q ss_pred hhHHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 5 EVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 5 ~VYKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
.+-|+..|-|-.....||-+.+.--.-. .-....+++...++++.++.+|...++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~a~~~s-------~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 14 ILNKLLDPELAQSERTEALQQLRVNYGS-------FVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 4568889999888888888877555555 44444555555555555555555555443
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.65 E-value=82 Score=29.87 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 33 ISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 33 I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+..+|..++.+++.++.+.+....+-..|+.+
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333333333333
No 108
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=46.54 E-value=13 Score=27.35 Aligned_cols=8 Identities=13% Similarity=-0.047 Sum_probs=2.8
Q ss_pred HhHHHHHH
Q psy14231 45 ATLDTKQD 52 (75)
Q Consensus 45 ~~~e~q~e 52 (75)
++++.++.
T Consensus 28 ~~~~~ki~ 35 (319)
T 1fzc_C 28 NSNNQKIV 35 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 109
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.34 E-value=42 Score=19.57 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
.++.+..+++.|.+. +++.+...|..++......+..+...-.++|..+..
T Consensus 12 sLE~~l~e~e~~~~~---~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Llnv 62 (84)
T 1gk4_A 12 SLERQMREMEENFAV---EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNV 62 (84)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555443 556666667777777777777666666666655543
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.14 E-value=68 Score=30.40 Aligned_cols=43 Identities=0% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
++.-.+.++......+...+.++..+.++|.+|+.++..+.+.
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e 2057 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE 2057 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555566666666666666666666666655443
No 111
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=46.04 E-value=46 Score=20.52 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
...+..+...+.+|+.++..+-..+..++++++.+.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777777777777776654
No 112
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.95 E-value=44 Score=24.91 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=22.2
Q ss_pred hhhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYI-SAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I-~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++..+.+..+.++.+|-.-+ -.+|-.++..-..+..+.+.++.+...+.
T Consensus 6 ~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 6 RLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666663211 23344444444444444444444433333
No 113
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=45.94 E-value=42 Score=19.35 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDT 49 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~ 49 (75)
.|-..++++-++.|...+++.+..+.++..
T Consensus 39 gEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 39 SEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566778888888888888888887777653
No 114
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=45.60 E-value=35 Score=18.44 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=12.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 41 DDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 41 e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
|.++..++.-.+.++.+++.|-.++...
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ss 31 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNAT 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 115
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=45.50 E-value=29 Score=20.50 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHR 55 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~ 55 (75)
.+..|.++++.|=..|...+..+......++
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555545444444444444433
No 116
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.33 E-value=61 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 31 DYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 31 E~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
...+.|+..+..++++++++.+..+..+..+.+++.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778888888888888877777777776654
No 117
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=45.28 E-value=22 Score=21.91 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=12.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 39 RHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 39 r~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.++..++++.++...+++++..|+
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555444
No 118
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=45.03 E-value=2.8 Score=20.93 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=8.1
Q ss_pred hhcchhhhcc
Q psy14231 9 LIGPILVKQE 18 (75)
Q Consensus 9 lvGpvLvkqd 18 (75)
.|||||+..|
T Consensus 15 vigpvllsad 24 (30)
T 3nk4_C 15 VIGPVLLSAD 24 (30)
T ss_dssp EEEEEEBCSC
T ss_pred EEeeEEeccc
Confidence 4799998766
No 119
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=44.80 E-value=37 Score=23.47 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=24.1
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDTIA 45 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~ 45 (75)
|.+-.++|..|+++|-+.|..|-+.++.--+
T Consensus 64 v~~~adqa~~nv~eRek~l~kEk~si~~s~k 94 (199)
T 2ap3_A 64 RGKAVKDLIKNADDRLKEFEKEEDAIKKSEQ 94 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999998777665433
No 120
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=43.94 E-value=23 Score=21.54 Aligned_cols=22 Identities=5% Similarity=0.314 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy14231 26 VKKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~ 47 (75)
+..|+.-+..++..++..+..+
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333444444444333
No 121
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=43.26 E-value=1.2e+02 Score=23.83 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
-.+|++|++||.-=+..-=.+|.-|+.-++.++.+|.+|...
T Consensus 113 S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 113 STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777755444433345555555555555555554433
No 122
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=43.06 E-value=83 Score=22.06 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 37 LKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+..+...+.++.++...+++++.+++..
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444445555555555555555555544
No 123
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.03 E-value=19 Score=22.61 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
++..++.-...||..+......++..+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455555555555544444444433
No 124
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=42.75 E-value=74 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=12.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 39 RHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 39 r~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.++..+..++.+...+++++..+++.+
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEf 89 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADF 89 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 125
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=41.99 E-value=41 Score=18.15 Aligned_cols=29 Identities=17% Similarity=0.333 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy14231 32 YISAELKRHDDTIATLDTKQDTHRENLTK 60 (75)
Q Consensus 32 ~I~~Eikr~e~~i~~~e~q~e~~~~~l~~ 60 (75)
|--.|+-.++..++.++++...++.++..
T Consensus 17 fspeelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 17 FSPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666555555443
No 126
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=41.98 E-value=53 Score=23.83 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQD------THRENLTKLQQQFQQ 67 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e------~~~~~l~~lQ~~~q~ 67 (75)
|+++.++.++.++..+...+..++.+.+ +.+.++.++++++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 292 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDA 292 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHH
Confidence 3455566655555555555555555443 224455555554443
No 127
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=41.93 E-value=61 Score=20.11 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14231 27 KKRIDYISAELKRHDDTIATLD-----TKQDTHRENLTKLQQQFQQEQAAKMR 74 (75)
Q Consensus 27 ~kRlE~I~~Eikr~e~~i~~~e-----~q~e~~~~~l~~lQ~~~q~~~~~~~~ 74 (75)
...++.|..+|.+++.-+.+-. =.....+..|..|+..+....+...|
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~l~P 109 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQP 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5567788888888887776642 24566777777788777777665544
No 128
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=41.49 E-value=1.3e+02 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 38 KRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 38 kr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.-|+.+|..+.++....=..|.-||..+....
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~ 145 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQV 145 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655566666665555443
No 129
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.21 E-value=64 Score=20.13 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+++.+...|..++..+..++..+.....++|..+
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555554444444444443
No 130
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=41.11 E-value=66 Score=20.27 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=38.0
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
|+++-.---.+++|++....|-.|+-..-+....+...+..++..|..+=|...
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 444445556788999998888888888766666777777777777766555443
No 131
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.93 E-value=64 Score=24.12 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
|+.-++.|+.-+......++.+...++.++..++.++.
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~ 87 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVK 87 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444443
No 132
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.72 E-value=20 Score=23.94 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy14231 45 ATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 45 ~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
..++++.......|..+|.++
T Consensus 118 ~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 118 KRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444333
No 133
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.44 E-value=60 Score=19.60 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
.+++.-.+.+..++..+++.+++++.+||.
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666666666666666666553
No 134
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=40.35 E-value=1e+02 Score=22.23 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
.|.++|..++.++++-|-+ ++...-+..++..++...+.|..||.++.....
T Consensus 356 ~t~eeal~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 407 (463)
T 2xz3_A 356 QTVDAALAAAQTNAAALSH--QRLTSLIHVLEQDQQRLITAINQTHYNLLNVAS 407 (463)
T ss_dssp SCHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999888876544 234555788888888888888888887776443
No 135
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.12 E-value=52 Score=18.82 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
+.+..=++| |+.+......++.+.+.++.+...|++++..
T Consensus 40 ~iL~~Ai~Y----I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 40 QILDKATEY----IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666 3446666666777777777777777766643
No 136
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=39.99 E-value=44 Score=19.46 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
.|-..++.++++-|.+.+++-++.+.++.
T Consensus 50 ~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 50 GEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 46667788888888888888888887765
No 137
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.50 E-value=58 Score=19.14 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
+++....+++.|.+. +++.+...|..++.+...++..+...-.++|..+..
T Consensus 14 ~Le~~l~e~E~~~~~---~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Llnv 64 (86)
T 1x8y_A 14 AKEAKLRDLEDSLAR---ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDI 64 (86)
T ss_dssp THHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665533 666677777777777777777776666666655543
No 138
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.34 E-value=1.1e+02 Score=22.51 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
++..++.+..+...++..+++++...+.+.+++.+-+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 139
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.08 E-value=43 Score=25.13 Aligned_cols=42 Identities=10% Similarity=0.300 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++..|...+..|++.+...+..++.+...++.++.+.+.++.
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~ 70 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIK 70 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665555555555555555555555555544
No 140
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.69 E-value=70 Score=19.91 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=33.7
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 12 PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 12 pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
|+|=-...++-....+.-+.-+..-+.+.+...+.++.+...+......|+.+++.-
T Consensus 4 PLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E 60 (129)
T 2fxo_A 4 PLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333334444445555555555666666666777777777777777777666644
No 141
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.58 E-value=1.3e+02 Score=23.11 Aligned_cols=61 Identities=8% Similarity=0.143 Sum_probs=47.6
Q ss_pred hcchhhhccH--HHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 10 IGPILVKQEM--EEAKQNVKKRIDY--ISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 10 vGpvLvkqd~--~ea~~~v~kRlE~--I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+-.=+++.++ +.++.++.+|-.- +-.+|-.++..-..+..+.+.++.+...+.+++.+...
T Consensus 8 ldi~~~r~~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 8 LDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp CCGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHcCCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445778886 7899999999632 35788889999999999999999998888887766443
No 142
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.35 E-value=73 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDT 49 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~ 49 (75)
++...+.-+..||..+......++.
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~ 64 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQN 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444455555555544444444443
No 143
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.19 E-value=67 Score=19.23 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++-++..+=.|+|-.++|-.-+...+..+..--.++..++.++..+++
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677777777777777777777777777777777766666554
No 144
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=36.29 E-value=96 Score=24.29 Aligned_cols=50 Identities=10% Similarity=0.270 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
.+....+..++..+..++..++.++..++...+.++....+++..+....
T Consensus 344 ~~l~~~i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~ 393 (695)
T 2j69_A 344 NHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTR 393 (695)
T ss_dssp HHHHHHHHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666666666666666665555443
No 145
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.18 E-value=65 Score=18.80 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
..++.|++-++.-+-=.|..|.++..-.-+.+..|..|+.+++....
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888877777888888888888888888888888888776654
No 146
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=36.14 E-value=57 Score=18.10 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
.||=|++..|..++++-+..-..|
T Consensus 6 EEILRLErEIE~Lqrqke~~~~~L 29 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQELSL 29 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999998887766554
No 147
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=35.70 E-value=82 Score=19.83 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
.++....+..+.+.+..+|.+++..+..+...+.
T Consensus 78 ~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 78 TEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544444444433
No 148
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=35.70 E-value=1.1e+02 Score=21.36 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 50 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q 50 (75)
...++...++.|++-++.+|..++..+..+..+
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999988888888777
No 149
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=35.54 E-value=1.2e+02 Score=23.59 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=47.4
Q ss_pred chhhhc----cHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 12 PILVKQ----EMEEAKQNVKKRID--YISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 12 pvLvkq----d~~ea~~~v~kRlE--~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
+=+++. +.+.++.++.+|-. .+-.++-.++.+-..+..+.+.++.+...+.+++-++..
T Consensus 5 ~~~~r~~~g~n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~ 69 (522)
T 3vbb_A 5 LDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMK 69 (522)
T ss_dssp GGGSCGGGTCCHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446777 89999999999953 235788889999999999999999999888887766543
No 150
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.19 E-value=60 Score=18.12 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=15.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 39 RHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 39 r~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.++.++..++..-..+..++..|...+
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666655443
No 151
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=34.80 E-value=57 Score=22.34 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 7 YKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 7 YKlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
+=.+||.|+...-.-.+ +|+..|+.+++.-+..+.
T Consensus 172 ~~~~G~~l~~~~~~~~~-------~~~~~~~~~~~~il~~l~ 206 (230)
T 3lec_A 172 ELRFGPFLLSNNTTVFK-------EKWQNELNKLTFALNSIP 206 (230)
T ss_dssp HHHHCHHHHHHCCHHHH-------HHHHHHHHHHHHHHHHSC
T ss_pred HHHhCHHHhhcCCHHHH-------HHHHHHHHHHHHHHHhcc
Confidence 34589999976554443 455556666766666654
No 152
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=34.62 E-value=69 Score=18.61 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
..|...+...|..++.++...+..+.....++|..+.-
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Llni 41 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDI 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777777766665666655543
No 153
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=34.53 E-value=99 Score=20.40 Aligned_cols=44 Identities=9% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
..+.|-+|-..-+.+++..|.+++..+..-+.+...++..+.+.
T Consensus 88 EAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~t 131 (155)
T 2efr_A 88 EAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQL 131 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555444443
No 154
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=33.70 E-value=59 Score=22.10 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=21.9
Q ss_pred HhhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 8 KLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 8 KlvGpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
=.+||.|+...-.-.+ +|+..|+.+++.-+..+.
T Consensus 167 ~~~G~~l~~~~~~~~~-------~~~~~~~~~~~~i~~~l~ 200 (225)
T 3kr9_A 167 VRFGPFLSKEVSPVFV-------QKWQKEAEKLEFALGQIP 200 (225)
T ss_dssp HHHCTTHHHHCCHHHH-------HHHHHHHHHHHHHHHHSC
T ss_pred HHhCHHHHhcCCHHHH-------HHHHHHHHHHHHHHHhcc
Confidence 3689999976554444 455555555766666654
No 155
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.61 E-value=78 Score=18.90 Aligned_cols=36 Identities=8% Similarity=0.186 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.+-...||..+..+++.++...+.....+...+.++
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555444444444433
No 156
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.46 E-value=44 Score=16.06 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14231 49 TKQDTHRENLTKLQQQF 65 (75)
Q Consensus 49 ~q~e~~~~~l~~lQ~~~ 65 (75)
+.++++++.+.+|..++
T Consensus 8 keledlqerlrklrkkl 24 (27)
T 3twe_A 8 KELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44455555555555544
No 157
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.38 E-value=1.5e+02 Score=22.26 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 34 SAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 34 ~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
++-+...+..|..++.+....+.+|..|+.++.+..
T Consensus 97 e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 97 ENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 555666777777777777777777777776665543
No 158
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.99 E-value=1.7e+02 Score=22.55 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 42 DTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 42 ~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
..|..++...+.++.+|..|...+..
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666655544
No 159
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=32.96 E-value=75 Score=18.56 Aligned_cols=15 Identities=7% Similarity=0.468 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELK 38 (75)
Q Consensus 24 ~~v~kRlE~I~~Eik 38 (75)
..++++-++|...|.
T Consensus 16 d~L~kkq~~L~~~i~ 30 (79)
T 4abm_A 16 EMLSKKQEFLEKKIE 30 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 160
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.93 E-value=2.2e+02 Score=23.89 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.5
Q ss_pred HHhHHHH
Q psy14231 44 IATLDTK 50 (75)
Q Consensus 44 i~~~e~q 50 (75)
+++++++
T Consensus 986 v~~L~~e 992 (1080)
T 2dfs_A 986 VLSLQEE 992 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 161
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=32.68 E-value=63 Score=17.59 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy14231 21 EAKQNVKKRIDY 32 (75)
Q Consensus 21 ea~~~v~kRlE~ 32 (75)
++..++..|++-
T Consensus 23 ~~l~~Lt~kL~~ 34 (47)
T 1aq5_A 23 ELINTLQQKLEA 34 (47)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 162
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.57 E-value=93 Score=20.79 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy14231 54 HRENLTKLQQQFQQE 68 (75)
Q Consensus 54 ~~~~l~~lQ~~~q~~ 68 (75)
++.++..+|.+++.+
T Consensus 65 Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 65 LRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHH
Confidence 333333334444433
No 163
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=32.51 E-value=32 Score=25.26 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.+++.++|.-|+.||.|+-+. +..+.=.-.++.+|++|..++
T Consensus 8 ~~t~~eki~~ie~~~~~~~k~-k~Te~~~~~lk~kla~lr~el 49 (376)
T 4a9a_A 8 MSTTVEKIKAIEDEMARTQKN-KATSFHLGQLKAKLAKLRREL 49 (376)
T ss_dssp -CHHHHHHHHHHHHHHHSCCS-TTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999887443 333344444555555555444
No 164
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=32.48 E-value=58 Score=17.71 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhH
Q psy14231 30 IDYISAELKRHDDTIATL 47 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~~ 47 (75)
.++++.||.++|..|..+
T Consensus 29 k~~L~~ei~~lE~ei~~~ 46 (50)
T 2a26_A 29 RDALTAEKSKIETEIKNK 46 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467777888787777643
No 165
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=32.35 E-value=1.2e+02 Score=20.61 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=42.7
Q ss_pred hHHhhcchhhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQE-MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 6 VYKlvGpvLvkqd-~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+|-|---+=|+++ .++|...|+..+..+..|-..+.....+..+--...+.++..|...+
T Consensus 4 ~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~ 64 (169)
T 3k29_A 4 RYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQL 64 (169)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456666 78999999999999888888777777777766666666666665544
No 166
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.68 E-value=63 Score=17.28 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+|.+.++++.....+.+++..||.+=+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 555666666666666666666665433
No 167
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.58 E-value=40 Score=16.33 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=8.7
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q psy14231 41 DDTIATLDTKQDTHRENLTK 60 (75)
Q Consensus 41 e~~i~~~e~q~e~~~~~l~~ 60 (75)
|-.-..++.+...++.++..
T Consensus 6 efendaleqkiaalkqkias 25 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 168
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=31.52 E-value=1.1e+02 Score=20.17 Aligned_cols=49 Identities=2% Similarity=0.074 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 18 EMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 18 d~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
+.+++...+..|+..|.+.+.+++.....+..-.......+.+++.-..
T Consensus 119 e~~~~~~~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~~~~ 167 (202)
T 2p4w_A 119 PINVKMRELAEFLHELNERIREIIEEKRELEEARILIETYIENTMRRLA 167 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 6777788899999998888888888877777766666666666665433
No 169
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=31.49 E-value=84 Score=18.67 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=29.3
Q ss_pred hhcchhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 9 LIGPILVKQE--MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 9 lvGpvLvkqd--~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.+||-.|.-+ .......+.+-+.-=..||.+++..++--.+..+++.++|..+-
T Consensus 4 ~~g~n~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 4 AIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 3678666554 23344455555555556777777777777777888888776653
No 170
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.37 E-value=95 Score=19.22 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
|-...+.++++..+.|-.++..++..++-+++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788788877777777777766654
No 171
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=31.06 E-value=76 Score=18.02 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q psy14231 28 KRIDYISAELKRHDDTIATLDTKQ 51 (75)
Q Consensus 28 kRlE~I~~Eikr~e~~i~~~e~q~ 51 (75)
.+.+++...+..++.++..++...
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~ 62 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQ 62 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344453333333444443333333
No 172
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=31.03 E-value=2e+02 Score=22.92 Aligned_cols=45 Identities=2% Similarity=0.136 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
-..+.+|+.-+++||..++.-+..++.+......+.......+..
T Consensus 351 ~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a 395 (602)
T 1cii_A 351 WDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNA 395 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999998888888777776655555444
No 173
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=30.89 E-value=56 Score=23.91 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
.+.++..++..++.++.+|.+|+.++
T Consensus 16 ~~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 16 HDSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 174
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=30.69 E-value=74 Score=18.71 Aligned_cols=13 Identities=0% Similarity=0.217 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy14231 49 TKQDTHRENLTKL 61 (75)
Q Consensus 49 ~q~e~~~~~l~~l 61 (75)
.+.+.+..++.+|
T Consensus 82 ~~~~~l~~~i~~l 94 (109)
T 1r8d_A 82 SQKEILMKKKQRM 94 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 175
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.35 E-value=96 Score=19.43 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
+|.+|++-+..|++.+++.++.+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554444443433333333
No 176
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.26 E-value=1.1e+02 Score=19.39 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQAAK 72 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~~ 72 (75)
.+...-+...-|-=.+++..+-.++.+.+..+..++..+.+.+...+..++..
T Consensus 30 ~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 30 QELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555677777888888888888888888888887777766643
No 177
>3m6j_A Uncharacterized protein; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; 1.90A {Leptospirillum rubarum}
Probab=29.93 E-value=27 Score=23.28 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.2
Q ss_pred hHHhhcchhhhccHH-HHHHHHHHHHHHHHHHHHH
Q psy14231 6 VYKLIGPILVKQEME-EAKQNVKKRIDYISAELKR 39 (75)
Q Consensus 6 VYKlvGpvLvkqd~~-ea~~~v~kRlE~I~~Eikr 39 (75)
+.+.+|++|-.--.. ..-..|.+|+++|.+|+..
T Consensus 15 ~H~e~GrLLK~Ll~st~~p~~Vr~rLs~iRSELD~ 49 (145)
T 3m6j_A 15 VHRNVGRWLSEILHASIRDTGVSSRIEFVRRTLHG 49 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence 567788887554422 3446889999999999853
No 178
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.82 E-value=58 Score=16.31 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy14231 53 THRENLT 59 (75)
Q Consensus 53 ~~~~~l~ 59 (75)
++++++.
T Consensus 17 ~lq~r~d 23 (32)
T 2akf_A 17 KLQERLD 23 (32)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 179
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.19 E-value=74 Score=17.27 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 37 LKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
+..++..+..++.+-..+..++..|+..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447777777777777777777777654
No 180
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.13 E-value=78 Score=17.53 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=13.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
++...++++..-..+..++..|+.+++
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555544443
No 181
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.01 E-value=1.4e+02 Score=22.28 Aligned_cols=41 Identities=5% Similarity=0.346 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
..++++-...++......+..++.+.+.+..++..++.+++
T Consensus 23 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~ 63 (405)
T 4b4t_J 23 FEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELR 63 (405)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444444555555555555555555555555444
No 182
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.98 E-value=94 Score=18.43 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 37 LKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 37 ikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
++.+|..|.++......+...|..+|.++|...
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 344566666666666666667777777776554
No 183
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=28.17 E-value=86 Score=18.82 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q psy14231 44 IATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 44 i~~~e~q~e~~~~~l~~lQ 62 (75)
+..++.+...++.++..|+
T Consensus 6 l~~l~~~~~~l~~~l~~l~ 24 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTN 24 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333334443333
No 184
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=27.99 E-value=1.2e+02 Score=19.35 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=14.5
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 16 KQEMEEAKQNVKKRIDYISAELKRHDDT 43 (75)
Q Consensus 16 kqd~~ea~~~v~kRlE~I~~Eikr~e~~ 43 (75)
+++++.....+.++-..|..-|+.++..
T Consensus 80 k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 80 KEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 185
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.97 E-value=1.3e+02 Score=19.85 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=4.3
Q ss_pred HHHHHHhHHHHH
Q psy14231 40 HDDTIATLDTKQ 51 (75)
Q Consensus 40 ~e~~i~~~e~q~ 51 (75)
++.++..++...
T Consensus 91 l~~~i~~l~~~~ 102 (278)
T 1r8e_A 91 IREKLDFLSALE 102 (278)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 186
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.83 E-value=28 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.406 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIATLD 48 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~~e 48 (75)
.|-..++.+-++-|++.+++.+..+.+++
T Consensus 54 gEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 54 GEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666777778888887777777776654
No 187
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=27.81 E-value=1.5e+02 Score=21.18 Aligned_cols=53 Identities=4% Similarity=0.094 Sum_probs=44.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQ 69 (75)
Q Consensus 17 qd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~ 69 (75)
+++.+-..+++++---|+.+-.|.++++.+.+.-.++.+.....+..++..+.
T Consensus 101 ~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak 153 (279)
T 3qwe_A 101 QPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARS 153 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777888888887788888889999999999999999999988888776543
No 188
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.81 E-value=81 Score=17.33 Aligned_cols=29 Identities=7% Similarity=0.180 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQQE 68 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~ 68 (75)
++.....++.+-..++.++..|+.++...
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554443
No 189
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=27.52 E-value=77 Score=16.96 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14231 20 EEAKQNVKKRIDYISAELKRHDDTIAT 46 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr~e~~i~~ 46 (75)
.|-..++.+.++-|++.+++-++.+.+
T Consensus 27 gEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 27 KEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 455667777888887777777766654
No 190
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.47 E-value=94 Score=17.94 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENL 58 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l 58 (75)
+-++..+=+.|+..++.++..-+..|..+..++.+.+..+
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455556666644444445555555554444444443
No 191
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=27.44 E-value=98 Score=18.15 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=25.9
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy14231 12 PILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQ 64 (75)
Q Consensus 12 pvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~ 64 (75)
|.|=-...++-....++-+.-+...+.+.+...+.++.+...+-.....|+.+
T Consensus 5 PLL~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 5 PLLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433334444444555555555555555666666666665555555555544
No 192
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=27.31 E-value=1e+02 Score=18.22 Aligned_cols=53 Identities=6% Similarity=0.099 Sum_probs=24.9
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 11 GPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 11 GpvLvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
|.-|-..++..+...|++=.+.|.+.- +.....+..+.+.++.....+-..+.
T Consensus 31 ~~kl~~eek~~i~~~i~e~~~wL~~~~---~a~~e~i~~k~~eL~~~~~~i~~k~y 83 (113)
T 3lof_A 31 KGKISEADKKKVLDKCQEVISWLDANT---LAEKDEFEHKRKELEQVCNPIISGLY 83 (113)
T ss_dssp BTTBCHHHHHHHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHcCC---cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555554444433210 00144555566666666655555554
No 193
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.23 E-value=1.8e+02 Score=20.99 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=15.2
Q ss_pred hcchhhh-ccHHHHHHHHHHHHHHHHH
Q psy14231 10 IGPILVK-QEMEEAKQNVKKRIDYISA 35 (75)
Q Consensus 10 vGpvLvk-qd~~ea~~~v~kRlE~I~~ 35 (75)
+..++.- .|.++|..++.++++-+=.
T Consensus 361 ~~~vl~G~~t~eeal~~~~~~i~~~l~ 387 (471)
T 3mq9_A 361 VINAASGRQTVDEALKDAQTRITAARD 387 (471)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3334443 3777777777777665433
No 194
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.14 E-value=1.7e+02 Score=21.78 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
...+++.++++..|-+.+...++.+.++....++++..+|
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666677777777777777777777777777776665
No 195
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.61 E-value=1.1e+02 Score=18.38 Aligned_cols=28 Identities=4% Similarity=0.003 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 26 VKKRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 26 v~kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
+.+|+..+..|+.+++.++.+...+++.
T Consensus 49 L~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 49 LEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333
No 196
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.53 E-value=99 Score=17.89 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
.-+.+=++|| ..+......+....+.++.+...|++++.
T Consensus 40 ~iL~kA~~yI----~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 40 SLLTKAKLHI----KKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666773 33555555666666666666666665554
No 197
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.45 E-value=1e+02 Score=18.06 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
.-|.+=++|| +.+......+....+.++.+-..|..++++
T Consensus 45 ~iL~~A~~YI----~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 45 VILKKATAYI----LSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556663 335555555555555555555555555544
No 198
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.11 E-value=1.2e+02 Score=18.67 Aligned_cols=44 Identities=11% Similarity=0.368 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy14231 19 MEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQ 66 (75)
Q Consensus 19 ~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q 66 (75)
-+++..+++..|.-++.||.++|. .+.....++.+-.-|..++.
T Consensus 45 Vd~t~~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe 88 (96)
T 1t3j_A 45 VDMTQKHLEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHH
Confidence 344455555555554444444442 23344445555555554443
No 199
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=26.05 E-value=87 Score=18.92 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKR 39 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr 39 (75)
...+..+.+.|+.||.+
T Consensus 20 q~~le~~r~~ir~eI~K 36 (86)
T 1cxz_B 20 QQQLELERERLRREIRK 36 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566777777766643
No 200
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=25.85 E-value=1.4e+02 Score=20.66 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q psy14231 38 KRHDDTIATLDTKQDTHRENLTKL 61 (75)
Q Consensus 38 kr~e~~i~~~e~q~e~~~~~l~~l 61 (75)
+..+..+.+++++.+.++.+|..|
T Consensus 120 ~~Ads~~~~lekKvn~aq~kLs~L 143 (201)
T 3u0c_A 120 KNADSKIKDLENKINQIQTRLSEL 143 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 335555666666666555555544
No 201
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=25.72 E-value=1e+02 Score=17.74 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
-|.+|+.+=+=-..+.++|.-||.+++..++.
T Consensus 25 SeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 25 SEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 56666666666666677777777777766654
No 202
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.68 E-value=1.4e+02 Score=19.38 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14231 20 EEAKQNVKKRIDYISAELKR 39 (75)
Q Consensus 20 ~ea~~~v~kRlE~I~~Eikr 39 (75)
++|..-+.+-...+..|++.
T Consensus 78 eeA~~~L~eYn~rL~~E~~d 97 (152)
T 4fla_A 78 DEACLLLAEYNGRLAAELED 97 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445443
No 203
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=25.23 E-value=1e+02 Score=21.08 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy14231 23 KQNVKKRIDYISAELKRHDDTIATLDTKQD 52 (75)
Q Consensus 23 ~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e 52 (75)
...+..+++.+..++.+++..+..++..+.
T Consensus 78 ~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~ 107 (249)
T 3qao_A 78 NVALDMQRHLLIEKKQRIETMLATLDLTIK 107 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444433
No 204
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.03 E-value=2e+02 Score=20.82 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy14231 47 LDTKQDTHRENLTK 60 (75)
Q Consensus 47 ~e~q~e~~~~~l~~ 60 (75)
+++..+.+...+.+
T Consensus 454 ~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 454 LKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHh
Confidence 33333333333333
No 205
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=24.82 E-value=51 Score=17.81 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy14231 40 HDDTIA 45 (75)
Q Consensus 40 ~e~~i~ 45 (75)
++..|.
T Consensus 61 Le~~l~ 66 (72)
T 2er8_A 61 LTRTLT 66 (72)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.58 E-value=69 Score=24.02 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy14231 25 NVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQ 62 (75)
Q Consensus 25 ~v~kRlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ 62 (75)
.++.++.++..|+.|++.....+.++....++++..++
T Consensus 36 ~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 36 LLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666777777777777777777777777776665543
No 207
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=24.54 E-value=1.7e+02 Score=19.87 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 40 HDDTIATLDTKQDTHRENLTKLQQQFQQEQAA 71 (75)
Q Consensus 40 ~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~~ 71 (75)
+=..+.+++.+...++++.+.|+.+....+..
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666665543
No 208
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=24.28 E-value=1.2e+02 Score=20.75 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Q psy14231 30 IDYISAELKRHDDTIAT--LDTKQDTHRENLTKLQ 62 (75)
Q Consensus 30 lE~I~~Eikr~e~~i~~--~e~q~e~~~~~l~~lQ 62 (75)
-+|+.+|++|++..++. ...+.+.++.++.=|+
T Consensus 197 ~~~~~~E~~Rl~~~l~~~~~~~k~d~~~~r~NIL~ 231 (248)
T 2c0g_A 197 YDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILE 231 (248)
T ss_dssp THHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 68999999999988731 2234444444444333
No 209
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=23.89 E-value=77 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy14231 45 ATLDTKQDTHRENLTKLQQQF 65 (75)
Q Consensus 45 ~~~e~q~e~~~~~l~~lQ~~~ 65 (75)
+|+++|+.++|+++..|-+++
T Consensus 245 qDLerql~~LR~eFN~Lsq~i 265 (278)
T 1slq_A 245 QDLERQLGELREEFNALSQEI 265 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 578888888999888887665
No 210
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=23.59 E-value=1.2e+02 Score=17.84 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy14231 29 RIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQ 63 (75)
Q Consensus 29 RlE~I~~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~ 63 (75)
|...-++||.-++.+|..+..--.-+-++++.+.+
T Consensus 15 rKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEq 49 (72)
T 2xu6_A 15 QKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQ 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445788888888888888888888888887764
No 211
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=23.54 E-value=1.3e+02 Score=21.29 Aligned_cols=23 Identities=9% Similarity=-0.020 Sum_probs=14.5
Q ss_pred cchhhh-ccHHHHHHHHHHHHHHH
Q psy14231 11 GPILVK-QEMEEAKQNVKKRIDYI 33 (75)
Q Consensus 11 GpvLvk-qd~~ea~~~v~kRlE~I 33 (75)
..++.- .|.++|..++.++++-|
T Consensus 348 ~~~~~G~~~~eeal~~~~~~~~~i 371 (449)
T 3iot_A 348 INAASGRQTVDAALAAAQTNAAAM 371 (449)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 334443 37777887777777663
No 212
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=23.37 E-value=1.1e+02 Score=18.85 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHHHHHHHH
Q psy14231 44 IATLDTKQDTHRENLTKL 61 (75)
Q Consensus 44 i~~~e~q~e~~~~~l~~l 61 (75)
+..++.+...++.++..+
T Consensus 25 l~~L~~~~~~L~~~l~~l 42 (168)
T 1buu_A 25 LANMEAEINTLKSKLELT 42 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 213
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.83 E-value=52 Score=18.77 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14231 21 EAKQNVKKRIDYISAELKRHDDTIATLDTKQDT 53 (75)
Q Consensus 21 ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q~e~ 53 (75)
.....|+.-|+||.+.=+-++.-+..++++.+.
T Consensus 26 ~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~ 58 (64)
T 3t97_C 26 LDQKRLDQELDFILSQQKELEDLLSPLEESVKE 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777777777777777666665544
No 214
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.92 E-value=1.3e+02 Score=17.75 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=15.9
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 15 VKQEMEEAKQNVKKRIDYISAELKRHDDT 43 (75)
Q Consensus 15 vkqd~~ea~~~v~kRlE~I~~Eikr~e~~ 43 (75)
++++++....++..+-..|..-|+.++..
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555656555555555555443
No 215
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=21.87 E-value=1e+02 Score=20.51 Aligned_cols=37 Identities=8% Similarity=0.173 Sum_probs=26.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14231 14 LVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTK 50 (75)
Q Consensus 14 Lvkqd~~ea~~~v~kRlE~I~~Eikr~e~~i~~~e~q 50 (75)
+.+.+-+..+..+..|+...+++...++.+++..++.
T Consensus 144 f~~a~d~~ik~yLa~rl~~~k~~~~~l~~~L~~~~~~ 180 (182)
T 2y3w_A 144 LLPGSDTDIKKYLASCLSSVKEEKQQLQQKLRKTEED 180 (182)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567778888888899888777777777666665543
No 216
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.75 E-value=38 Score=22.16 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q psy14231 24 QNVKKRIDYISAELKRHDDTIATL 47 (75)
Q Consensus 24 ~~v~kRlE~I~~Eikr~e~~i~~~ 47 (75)
.++++|.+.....++-.+..+.++
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTL 122 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555333333333333333
No 217
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.20 E-value=2.8e+02 Score=21.26 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy14231 35 AELKRHDDTIATLDTKQDTHRENLTKLQQQFQQ 67 (75)
Q Consensus 35 ~Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~ 67 (75)
..++..+.++.+...........|++.+..+++
T Consensus 128 ~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~ 160 (464)
T 1m1j_B 128 NKLVKTQKQRKDNDIILSEYNTEMELHYNYIKD 160 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555554443
No 218
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.87 E-value=1.5e+02 Score=17.82 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14231 36 ELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70 (75)
Q Consensus 36 Eikr~e~~i~~~e~q~e~~~~~l~~lQ~~~q~~~~ 70 (75)
++..+...|..++......+..+......++..+.
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 72 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLD 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666655555445554443
No 219
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.04 E-value=2e+02 Score=19.07 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy14231 31 DYISAELKRHDDTIATLDTKQDTHRE 56 (75)
Q Consensus 31 E~I~~Eikr~e~~i~~~e~q~e~~~~ 56 (75)
+.+..|+-.+..+..-++.+..+++.
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333443333333333333333333
Done!