RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14231
(75 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.007
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 11/33 (33%)
Query: 23 KQNVKKRIDYISAELKRH-DDT-----I-ATLD 48
KQ +KK + A LK + DD+ I AT++
Sbjct: 19 KQALKK----LQASLKLYADDSAPALAIKATME 47
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 28.3 bits (63), Expect = 0.14
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKL 61
D VYK +G ++VK ++A +K++I+ + L + L+ K +
Sbjct: 51 DDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110
Query: 62 QQQFQ 66
+
Sbjct: 111 LRPPT 115
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 26.6 bits (59), Expect = 0.63
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 1 MKDGEVYKLIGPILVKQEMEEAKQN 25
M G + K+ GP ++ + M A+
Sbjct: 1 MIQGVIQKIAGPAVIAKGMLGARMY 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 26.6 bits (59), Expect = 0.77
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 17 QEMEEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQFQQEQA 70
+ EE +N R+ + E+ + + T++ T E K + + +Q +
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 25.9 bits (57), Expect = 1.5
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1 MKDGEVYKLIGPILVKQEMEEAKQN--VKKRIDYISAELKRHDDTIATLDTKQDT 53
+ G + ++ GP++V M+ AK V+ + E+ R + A + ++T
Sbjct: 2 VAKGRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEET 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.6
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 20 EEAKQNVKKRIDYISAELKRHDDTIATLDTKQDTHRENLTKLQQQF-QQEQAAKMRA 75
E +R+ I+ ++ D +AT D + + + LT + + + A+ R
Sbjct: 320 REVLTTNPRRLSIIAESIR---DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 24.4 bits (54), Expect = 3.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 19 MEEAKQNVKKRIDYISA 35
M+ A V +IDYI+
Sbjct: 300 MKMALSTVTSKIDYINP 316
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 24.4 bits (54), Expect = 4.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 19 MEEAKQNVKKRIDYISA 35
M+ A V IDY+++
Sbjct: 281 MKMAMHGVDTPIDYLNS 297
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 23.9 bits (52), Expect = 7.2
Identities = 4/8 (50%), Positives = 7/8 (87%)
Query: 1 MKDGEVYK 8
+KDG +Y+
Sbjct: 404 IKDGLLYE 411
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 23.3 bits (51), Expect = 8.7
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 12 PILVKQEMEEAKQNVKKRIDYISAELKRHDDT 43
P V+ E +Q + ++I + RH ++
Sbjct: 211 PNPVRTVFREFEQLNRNFSNFILDKFLRHCES 242
>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase,
dehydroascorbate reductase, reductase; 1.70A {Homo
sapiens} PDB: 3q19_A* 3qag_A*
Length = 239
Score = 23.5 bits (51), Expect = 9.5
Identities = 3/40 (7%), Positives = 13/40 (32%)
Query: 2 KDGEVYKLIGPILVKQEMEEAKQNVKKRIDYISAELKRHD 41
+ + + +E K +++ + L+ +
Sbjct: 123 VPHLTKECLVALRSGRESTNLKAALRQEFSNLEEILEYQN 162
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 23.4 bits (51), Expect = 9.6
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 1 MKDGEVYK 8
MK+G+VYK
Sbjct: 392 MKEGKVYK 399
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.127 0.332
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,024,717
Number of extensions: 47511
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 47
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)