BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14232
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SAC|A Chain A, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|B Chain B, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|C Chain C, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|D Chain D, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1SAC|E Chain E, The Structure Of Pentameric Human Serum Amyloid P
Component
pdb|1LGN|A Chain A, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|B Chain B, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|C Chain C, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|D Chain D, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1LGN|E Chain E, Decameric Damp Complex Of Human Serum Amyloid P Component
pdb|1GYK|A Chain A, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|B Chain B, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|C Chain C, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|D Chain D, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|1GYK|E Chain E, Serum Amyloid P Component Co-Crystallised With Mobdg At
Neutral Ph
pdb|2A3W|A Chain A, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|B Chain B, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|C Chain C, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|D Chain D, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|E Chain E, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|F Chain F, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|G Chain G, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|H Chain H, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|I Chain I, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|J Chain J, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|K Chain K, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|L Chain L, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|M Chain M, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|N Chain N, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|O Chain O, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|P Chain P, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|Q Chain Q, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|R Chain R, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|S Chain S, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3W|T Chain T, Decameric Structure Of Human Serum Amyloid P-Component
Bound To Bis-1,
2-{[(Z)-2-Carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}-Ethane
pdb|2A3X|A Chain A, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|B Chain B, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|C Chain C, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|D Chain D, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|E Chain E, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|F Chain F, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|G Chain G, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|H Chain H, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|I Chain I, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3X|J Chain J, Decameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To Bis-1,2-{[(Z)-2carboxy-
2-Methyl-1,3-Dioxane]- 5-Yloxycarbonyl}- Piperazine
pdb|2A3Y|A Chain A, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|B Chain B, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|C Chain C, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|D Chain D, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|2A3Y|E Chain E, Pentameric Crystal Structure Of Human Serum Amyloid
P-Component Bound To
Bis-1,2-{[(Z)-2carboxy-2-Methyl-1,
3-Dioxane]-5-Yloxycarbamoyl}- Ethane.
pdb|3D5O|A Chain A, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|B Chain B, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|C Chain C, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|D Chain D, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|3D5O|E Chain E, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
pdb|2W08|A Chain A, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|B Chain B, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|C Chain C, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|D Chain D, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|2W08|E Chain E, The Structure Of Serum Amyloid P Component Bound To 0-
Phospho-Threonine
pdb|3KQR|A Chain A, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|B Chain B, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|C Chain C, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|D Chain D, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
pdb|3KQR|E Chain E, The Structure Of Serum Amyloid P Component Bound To
Phosphoethanolamine
Length = 204
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKF 65
+NEL ++K+ EY + + ++ S + ++K+ VH+ + WESS +F
Sbjct: 58 DNELLVYKERVGEYSLYIGRHKVTS------KVIEKFPAPVHICVSWESSSGIAEF 107
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 31 QLLSAQLNENESVQKYCNIVHL---DLGW 56
+LL+A LN E ++KY I HL D+G+
Sbjct: 224 ELLTADLNNGEWIRKYGEIHHLQEIDIGY 252
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDL 54
++++C QK L Q L +AQ ++ E+ K IV LDL
Sbjct: 608 VYQRCVNLVQKTLAQAXLNNAQPDQYEAPDKDFXIVALDL 647
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 2 VEEVQKKLENE-------LNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53
V E+ KK E+E F+ QK+ K L+QR L Q EN+ +Y NI+ D
Sbjct: 227 VLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQR--LEGQRPENKGKNRYKNILPFD 283
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDL 54
++++C QK L Q L +AQ ++ E+ K IV LDL
Sbjct: 583 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDL 622
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDL 54
++++C QK L Q L +AQ ++ E+ K IV LDL
Sbjct: 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDL 609
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,949,723
Number of Sequences: 62578
Number of extensions: 94150
Number of successful extensions: 379
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 30
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)