BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14232
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03958|PFD6_MOUSE Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1
Length = 127
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKY------CNIVHLDL 54
M E +QKKL+ E+ ++Q QK+ K ++ RQ L AQL EN V++ N+V L
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLL 60
Query: 55 GWESSRDGLKFCTARMGRLLDKMSA 79
G + L A +G+ LD ++A
Sbjct: 61 GPVLVKQELGEARATVGKRLDYITA 85
>sp|O15212|PFD6_HUMAN Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKY------CNIVHLDL 54
M E +QKKL+ E+ ++Q QK+ K ++ RQ L AQL EN V++ N+V L
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLL 60
Query: 55 GWESSRDGLKFCTARMGRLLDKMSA 79
G + L A +G+ LD ++A
Sbjct: 61 GPVLVKQELGEARATVGKRLDYITA 85
>sp|Q5TJE6|PFD6_CANFA Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKY------CNIVHLDL 54
M E +QKKL+ E+ ++Q QK+ K ++ RQ L AQL EN V++ N+V L
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLL 60
Query: 55 GWESSRDGLKFCTARMGRLLDKMSA 79
G + L A +G+ LD ++A
Sbjct: 61 GPVLVKQELGEARATVGKRLDYITA 85
>sp|Q17Q89|PFD6_BOVIN Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1
Length = 129
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKY------CNIVHLDL 54
M E +QKKL+ E+ ++Q QK+ K ++ RQ L AQL EN V++ N+V L
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLL 60
Query: 55 GWESSRDGLKFCTARMGRLLDKMSA 79
G + L A +G+ LD ++A
Sbjct: 61 GPVLVKQELGEARATVGKRLDYITA 85
>sp|O60271|JIP4_HUMAN C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens
GN=SPAG9 PE=1 SV=4
Length = 1321
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 45 KYCNIVHLDLGWESSRDGLKFCTARMGRLL-DKMSASAFDLFHDR 88
YC++ H L + RD +KF A G+++ + S+S DL D+
Sbjct: 1208 PYCSMAHAQLCFHGHRDAVKFFVAVPGQVISPQSSSSGTDLTGDK 1252
>sp|B0TX13|GCP_FRAP2 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Francisella philomiragia subsp. philomiragia (strain
ATCC 25017) GN=gcp PE=3 SV=1
Length = 336
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCT 67
L +C+K QK N+R ++S ++ N+ ++ +I+ + G+E +K+CT
Sbjct: 251 LVTKCEKALQKTGNKRLVISGGVSANKLLRSKLDILSKNKGYEIFFPPMKYCT 303
>sp|Q58A65|JIP4_MOUSE C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus
GN=Spag9 PE=1 SV=2
Length = 1321
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 45 KYCNIVHLDLGWESSRDGLKFCTARMGRLLDKMSAS-AFDLFHDR 88
YC++ H L + RD +KF A G+++ S+S DL D+
Sbjct: 1208 PYCSMAHAQLCFHGHRDAVKFFVAVPGQVISPQSSSGGADLTADK 1252
>sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3
OS=Arabidopsis thaliana GN=At3g22845 PE=2 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 27 LNQRQLLSAQLNENESVQKYC-----------NIVHLDLGWESSRDGLKF-CTARMGRLL 74
+NQ LS +N+ E VQ+Y +V D+ W S GL F T+ G ++
Sbjct: 22 INQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGSDHPGLDFTVTSPAGNIV 81
Query: 75 DKMSASAFDLF 85
+ ++ D F
Sbjct: 82 QTLKGTSGDKF 92
>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770
PE=2 SV=1
Length = 125
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53
KK++ E+ ++ QK K++ QR +L +QLNEN+ V N++ D
Sbjct: 10 KKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPD 56
>sp|B1I6E0|LEPA_DESAP Elongation factor 4 OS=Desulforudis audaxviator (strain MP104C)
GN=lepA PE=3 SV=1
Length = 602
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 39 ENESVQKYCNIVHLDLGWESSRDG-LKFCTARMGRLLDKMSASAFDLFHDRQERERG 94
E + ++ +C I H+D G + D L++ A +GR + + DL ERERG
Sbjct: 4 ERDRIRNFCIIAHIDHGKSTLADRLLEYTGALVGRRMQEQVLDQMDL-----ERERG 55
>sp|P86148|RBP1_PLAF7 Reticulocyte-binding protein PFD0110w OS=Plasmodium falciparum
(isolate 3D7) GN=PFD0110w PE=3 SV=1
Length = 2971
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 8 KLENELNLFKQCQKEYQKVLNQ--------RQLLSAQLNENESVQKYCNIVHLDLGWESS 59
K+ + LFKQ + E Q ++ +Q L+ NE E ++KY N VH+D + +
Sbjct: 2052 KINETIKLFKQIKNERQNDVHNIKEDYNLLQQYLNYMKNEMEQLKKYKNDVHMDKNYVEN 2111
Query: 60 RDGLKFCTARMGRLLDKMSASAFD 83
+G K +LL + +S +D
Sbjct: 2112 NNGEK------EKLLKETISSYYD 2129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,114,129
Number of Sequences: 539616
Number of extensions: 1220010
Number of successful extensions: 5669
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 5638
Number of HSP's gapped (non-prelim): 59
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)