Query psy14232
Match_columns 112
No_of_seqs 114 out of 260
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 22:47:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3478|consensus 99.9 1.1E-23 2.4E-28 153.6 7.3 78 4-81 2-85 (120)
2 PRK09343 prefoldin subunit bet 99.8 7.2E-21 1.6E-25 136.9 8.1 90 1-95 1-96 (121)
3 COG1382 GimC Prefoldin, chaper 99.8 9.4E-20 2E-24 133.2 4.7 68 2-69 1-68 (119)
4 TIGR02338 gimC_beta prefoldin, 99.7 6E-17 1.3E-21 114.0 5.7 65 5-69 1-65 (110)
5 cd00632 Prefoldin_beta Prefold 99.5 6.3E-14 1.4E-18 97.6 5.0 61 9-69 1-61 (105)
6 PF01920 Prefoldin_2: Prefoldi 99.3 3.9E-11 8.4E-16 81.1 8.1 69 10-79 1-69 (106)
7 cd00890 Prefoldin Prefoldin is 98.3 4.5E-06 9.7E-11 58.0 7.3 60 10-69 2-85 (129)
8 PRK03947 prefoldin subunit alp 98.0 2.3E-05 5E-10 56.4 7.4 87 5-91 4-105 (140)
9 KOG4098|consensus 97.6 0.00012 2.6E-09 55.3 5.5 63 6-68 14-76 (140)
10 TIGR00293 prefoldin, archaeal 96.6 0.014 2.9E-07 41.1 7.0 56 10-65 2-59 (126)
11 cd00584 Prefoldin_alpha Prefol 94.8 0.17 3.7E-06 35.7 6.9 43 10-52 2-44 (129)
12 COG1730 GIM5 Predicted prefold 92.9 0.59 1.3E-05 35.3 7.0 69 3-71 2-73 (145)
13 PF04977 DivIC: Septum formati 92.7 1 2.3E-05 28.5 7.1 50 11-60 21-78 (80)
14 PRK14011 prefoldin subunit alp 92.4 0.95 2.1E-05 33.9 7.5 60 6-65 2-61 (144)
15 KOG3501|consensus 92.1 0.22 4.7E-06 36.7 3.7 61 18-78 14-77 (114)
16 PF08826 DMPK_coil: DMPK coile 91.0 2.6 5.5E-05 27.7 7.5 45 4-48 1-45 (61)
17 PRK00888 ftsB cell division pr 86.7 6.5 0.00014 27.8 7.7 22 41-62 69-90 (105)
18 PF02996 Prefoldin: Prefoldin 74.9 3.6 7.8E-05 28.1 2.9 50 20-69 2-54 (120)
19 KOG1760|consensus 74.5 17 0.00036 27.5 6.5 68 10-78 19-87 (131)
20 COG4372 Uncharacterized protei 67.6 24 0.00052 31.5 6.9 40 9-48 139-178 (499)
21 PRK15365 type III secretion sy 65.9 17 0.00038 26.5 4.9 40 7-46 19-58 (107)
22 PF13093 FTA4: Kinetochore com 64.1 48 0.001 26.2 7.5 69 11-81 139-207 (213)
23 PF04880 NUDE_C: NUDE protein, 62.3 20 0.00043 27.7 4.9 44 16-59 2-45 (166)
24 PF06005 DUF904: Protein of un 58.5 53 0.0011 22.0 7.2 48 3-53 7-54 (72)
25 PF08317 Spc7: Spc7 kinetochor 57.4 63 0.0014 26.5 7.3 43 6-48 229-271 (325)
26 PF14193 DUF4315: Domain of un 57.0 29 0.00062 24.0 4.5 61 15-79 2-62 (83)
27 PRK15352 type III secretion sy 54.5 82 0.0018 23.2 6.7 36 3-38 70-105 (125)
28 PF10046 BLOC1_2: Biogenesis o 54.4 69 0.0015 22.1 7.4 46 4-49 42-87 (99)
29 PF04977 DivIC: Septum formati 54.2 27 0.00059 21.9 3.8 43 13-58 16-59 (80)
30 PF10473 CENP-F_leu_zip: Leuci 53.7 80 0.0017 23.7 6.8 51 3-53 55-105 (140)
31 PF11932 DUF3450: Protein of u 53.2 99 0.0021 24.2 7.6 40 8-47 50-89 (251)
32 PRK03947 prefoldin subunit alp 50.5 62 0.0014 23.0 5.6 40 5-44 11-50 (140)
33 KOG3129|consensus 50.3 26 0.00056 28.7 3.9 28 18-45 18-45 (231)
34 PF01519 DUF16: Protein of unk 49.0 43 0.00093 24.3 4.5 10 68-77 91-100 (102)
35 PF07303 Occludin_ELL: Occludi 47.7 80 0.0017 22.2 5.7 33 7-39 15-47 (101)
36 smart00787 Spc7 Spc7 kinetocho 47.7 1.1E+02 0.0024 25.5 7.3 45 6-50 224-268 (312)
37 KOG0976|consensus 47.3 1E+02 0.0022 30.3 7.8 36 13-48 112-147 (1265)
38 PF08286 Spc24: Spc24 subunit 46.9 3.2 7E-05 29.4 -1.5 60 10-70 9-79 (118)
39 PF09728 Taxilin: Myosin-like 46.5 1.1E+02 0.0025 25.2 7.3 46 5-50 48-97 (309)
40 TIGR00634 recN DNA repair prot 46.3 1.1E+02 0.0025 26.8 7.5 49 5-53 159-207 (563)
41 PF10226 DUF2216: Uncharacteri 45.1 67 0.0015 25.8 5.4 42 2-53 43-84 (195)
42 PF01920 Prefoldin_2: Prefoldi 44.8 85 0.0018 20.6 5.2 41 6-46 4-44 (106)
43 cd00179 SynN Syntaxin N-termin 43.9 94 0.002 21.7 5.6 33 3-37 91-123 (151)
44 cd07596 BAR_SNX The Bin/Amphip 43.9 1.2E+02 0.0026 21.9 8.0 70 7-81 11-80 (218)
45 PRK11637 AmiB activator; Provi 43.1 1.5E+02 0.0032 25.0 7.5 8 63-70 144-151 (428)
46 PRK13922 rod shape-determining 42.7 1.7E+02 0.0036 23.0 7.7 44 9-52 71-114 (276)
47 PF12777 MT: Microtubule-bindi 42.3 1.3E+02 0.0028 24.9 6.9 39 4-42 239-277 (344)
48 PF10303 DUF2408: Protein of u 41.2 92 0.002 22.9 5.4 88 3-94 3-99 (134)
49 TIGR00293 prefoldin, archaeal 40.6 88 0.0019 21.7 5.0 39 6-44 5-43 (126)
50 PF15294 Leu_zip: Leucine zipp 40.4 1.2E+02 0.0026 25.4 6.5 69 2-80 134-202 (278)
51 PF10498 IFT57: Intra-flagella 40.3 1.3E+02 0.0029 25.5 6.9 37 5-41 264-300 (359)
52 COG4942 Membrane-bound metallo 39.9 1.6E+02 0.0035 26.0 7.5 27 16-42 61-87 (420)
53 PF09726 Macoilin: Transmembra 39.7 1.3E+02 0.0029 27.8 7.2 40 8-47 482-521 (697)
54 PRK01203 prefoldin subunit alp 39.1 1.6E+02 0.0035 21.9 7.4 49 13-61 6-56 (130)
55 PRK10884 SH3 domain-containing 38.8 1.2E+02 0.0027 23.8 6.1 15 38-52 153-167 (206)
56 PF13942 Lipoprotein_20: YfhG 38.3 1.8E+02 0.0039 23.1 6.8 46 5-50 110-159 (179)
57 TIGR02209 ftsL_broad cell divi 37.0 1.1E+02 0.0025 19.6 6.9 32 28-59 35-66 (85)
58 COG1730 GIM5 Predicted prefold 36.6 1.7E+02 0.0036 22.1 6.2 38 3-40 97-134 (145)
59 PF12325 TMF_TATA_bd: TATA ele 36.3 1.7E+02 0.0037 21.3 7.1 43 2-44 18-60 (120)
60 PF06133 DUF964: Protein of un 36.2 86 0.0019 21.0 4.3 21 7-27 33-53 (108)
61 PF05377 FlaC_arch: Flagella a 36.0 65 0.0014 20.9 3.4 33 18-53 4-36 (55)
62 PF15233 SYCE1: Synaptonemal c 35.5 70 0.0015 24.3 4.0 43 4-53 3-49 (134)
63 smart00188 IL10 Interleukin-10 35.4 17 0.00036 27.4 0.7 56 6-63 70-125 (137)
64 PF14712 Snapin_Pallidin: Snap 34.7 1.3E+02 0.0028 19.8 4.9 40 4-43 11-50 (92)
65 PF00726 IL10: Interleukin 10 34.5 7.2 0.00016 30.0 -1.4 57 5-63 101-157 (170)
66 PHA03373 tegument protein; Pro 34.4 1.5E+02 0.0032 24.7 6.0 68 8-80 67-145 (247)
67 PF09325 Vps5: Vps5 C terminal 33.9 2E+02 0.0043 21.4 7.2 47 7-53 31-77 (236)
68 cd07660 BAR_Arfaptin The Bin/A 33.1 2.1E+02 0.0046 22.7 6.6 43 7-49 2-44 (201)
69 COG3853 TelA Uncharacterized p 32.6 1.4E+02 0.0031 26.1 5.9 43 6-48 129-171 (386)
70 PF08317 Spc7: Spc7 kinetochor 32.0 2.2E+02 0.0049 23.3 6.8 40 15-54 231-270 (325)
71 PRK13922 rod shape-determining 31.3 1.9E+02 0.0041 22.7 6.1 46 10-55 65-110 (276)
72 PF10224 DUF2205: Predicted co 31.0 64 0.0014 22.2 2.9 38 26-63 25-63 (80)
73 PF14988 DUF4515: Domain of un 30.4 2.6E+02 0.0057 21.9 6.7 51 3-53 50-100 (206)
74 PRK00888 ftsB cell division pr 30.3 1.9E+02 0.0042 20.2 5.4 31 23-53 33-63 (105)
75 cd00632 Prefoldin_beta Prefold 30.2 1.4E+02 0.003 20.4 4.6 37 17-53 2-38 (105)
76 COG2919 Septum formation initi 28.5 2.2E+02 0.0047 20.2 6.9 45 18-62 61-113 (117)
77 KOG3392|consensus 28.5 29 0.00062 26.4 0.9 36 41-76 55-111 (147)
78 PF02388 FemAB: FemAB family; 28.0 2.2E+02 0.0047 24.0 6.2 45 28-72 273-318 (406)
79 KOG3047|consensus 27.5 1.7E+02 0.0037 22.6 5.0 58 4-61 27-94 (157)
80 PF05064 Nsp1_C: Nsp1-like C-t 27.4 2.3E+02 0.0049 20.1 6.1 42 9-50 52-93 (116)
81 PF04156 IncA: IncA protein; 26.3 2.6E+02 0.0057 20.4 7.1 27 18-44 162-188 (191)
82 PRK10884 SH3 domain-containing 26.0 3.3E+02 0.0071 21.4 7.3 15 37-51 138-152 (206)
83 PRK10869 recombination and rep 25.7 4.5E+02 0.0097 23.4 8.0 47 5-51 155-201 (553)
84 PF04111 APG6: Autophagy prote 25.2 3.9E+02 0.0085 22.0 7.7 32 17-48 60-91 (314)
85 PF05816 TelA: Toxic anion res 24.8 3.6E+02 0.0079 22.2 6.9 42 7-48 84-125 (333)
86 PF06752 E_Pc_C: Enhancer of P 24.5 1.2E+02 0.0026 24.9 3.9 22 13-36 4-25 (230)
87 PF12210 Hrs_helical: Hepatocy 24.2 2.4E+02 0.0053 20.2 5.0 32 9-40 55-86 (96)
88 PF14131 DUF4298: Domain of un 24.2 1.9E+02 0.0042 19.6 4.4 20 7-26 17-36 (90)
89 COG1196 Smc Chromosome segrega 24.1 3.2E+02 0.0069 26.4 7.1 46 7-52 453-498 (1163)
90 COG1198 PriA Primosomal protei 23.8 96 0.0021 29.1 3.6 60 40-108 493-552 (730)
91 cd08806 CARD_CARD14_CARMA2 Cas 23.7 44 0.00096 23.6 1.1 30 62-91 44-76 (86)
92 PF06456 Arfaptin: Arfaptin-li 23.6 3.8E+02 0.0082 21.3 7.1 45 5-49 31-75 (229)
93 KOG2264|consensus 23.5 2.5E+02 0.0053 26.8 6.1 44 7-50 103-147 (907)
94 TIGR02338 gimC_beta prefoldin, 23.2 2.6E+02 0.0056 19.3 5.4 39 15-53 4-42 (110)
95 PHA02047 phage lambda Rz1-like 22.9 3.1E+02 0.0066 20.0 6.7 39 5-46 39-77 (101)
96 PF09340 NuA4: Histone acetylt 22.9 2.2E+02 0.0049 19.1 4.5 31 21-51 2-34 (80)
97 PF10168 Nup88: Nuclear pore c 22.8 4.4E+02 0.0095 24.6 7.6 46 4-49 569-614 (717)
98 PF13600 DUF4140: N-terminal d 22.6 2.5E+02 0.0053 18.8 5.1 31 7-37 70-100 (104)
99 PRK00708 sec-independent trans 22.4 4.1E+02 0.009 21.3 6.6 45 2-46 43-91 (209)
100 PTZ00007 (NAP-L) nucleosome as 22.4 2.4E+02 0.0052 24.0 5.5 29 1-29 31-59 (337)
101 COG1792 MreC Cell shape-determ 21.9 4.4E+02 0.0096 21.5 7.4 57 9-65 68-124 (284)
102 KOG1507|consensus 21.8 93 0.002 27.1 2.9 26 1-26 67-92 (358)
103 PF05667 DUF812: Protein of un 21.8 4.9E+02 0.011 23.8 7.6 38 4-41 332-369 (594)
104 cd08809 CARD_CARD9 Caspase act 21.4 41 0.0009 23.8 0.6 28 63-90 45-75 (86)
105 PRK15352 type III secretion sy 21.4 3.4E+02 0.0074 20.0 5.5 29 19-47 72-100 (125)
106 PF04111 APG6: Autophagy prote 21.3 4.7E+02 0.01 21.6 7.7 26 12-37 62-87 (314)
107 smart00338 BRLZ basic region l 20.9 2.2E+02 0.0048 17.6 5.3 8 19-26 31-38 (65)
108 KOG0728|consensus 20.8 2.8E+02 0.0061 24.1 5.5 60 15-74 25-94 (404)
109 TIGR00219 mreC rod shape-deter 20.7 4.6E+02 0.01 21.2 7.2 48 13-61 72-120 (283)
110 KOG4796|consensus 20.6 4E+02 0.0087 24.8 6.7 33 6-38 507-539 (604)
111 KOG4360|consensus 20.3 4.6E+02 0.0099 24.4 7.0 47 3-49 215-261 (596)
112 PF07106 TBPIP: Tat binding pr 20.1 1.5E+02 0.0032 21.8 3.3 25 55-79 113-137 (169)
No 1
>KOG3478|consensus
Probab=99.89 E-value=1.1e-23 Score=153.63 Aligned_cols=78 Identities=28% Similarity=0.332 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeec------chhhhhhHhh
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCT------ARMGRLLDKM 77 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~------~r~~~~~~~~ 77 (112)
.+++++++++++||+||+++.+.+.+|++||+||+||+.|++||++|++|++|||++|+|+++. .+||+|||||
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999975 5899999999
Q ss_pred hhhh
Q psy14232 78 SASA 81 (112)
Q Consensus 78 ~~~~ 81 (112)
+++-
T Consensus 82 ~~Ei 85 (120)
T KOG3478|consen 82 SKEI 85 (120)
T ss_pred HHHH
Confidence 9987
No 2
>PRK09343 prefoldin subunit beta; Provisional
Probab=99.84 E-value=7.2e-21 Score=136.93 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecch------hhhhh
Q psy14232 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTAR------MGRLL 74 (112)
Q Consensus 1 Mm~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r------~~~~~ 74 (112)
||..|||++|+++.+||++|++++.++.+|+++++|++||+.|++||+.|++|++|||+||+++|+.++ +..++
T Consensus 1 ~~~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~ 80 (121)
T PRK09343 1 MAENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERK 80 (121)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999875 67888
Q ss_pred HhhhhhhchhhhhHHHhhhcC
Q psy14232 75 DKMSASAFDLFHDRQERERGS 95 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~ 95 (112)
++|.... .++|++.-.
T Consensus 81 E~ie~~i-----k~lekq~~~ 96 (121)
T PRK09343 81 ELLELRS-----RTLEKQEKK 96 (121)
T ss_pred HHHHHHH-----HHHHHHHHH
Confidence 8888666 666665433
No 3
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.4e-20 Score=133.16 Aligned_cols=68 Identities=25% Similarity=0.261 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecch
Q psy14232 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTAR 69 (112)
Q Consensus 2 m~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r 69 (112)
|..|||++|+.+++||++|.++++++.+|+++++||+|++.|++||+.|++|++|||.||+++|++++
T Consensus 1 ~~~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k 68 (119)
T COG1382 1 MEQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSK 68 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhH
Confidence 45689999999999999999999999999999999999999999999999999999999999999965
No 4
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.68 E-value=6e-17 Score=113.96 Aligned_cols=65 Identities=26% Similarity=0.248 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecch
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTAR 69 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r 69 (112)
|||++|+.+.+||++|++++.+.+++++++++++||+.|.+||+.|++|++|||+||+++|..++
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~ 65 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDK 65 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecH
Confidence 68999999999999999999999999999999999999999999999999999999999999885
No 5
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.47 E-value=6.3e-14 Score=97.59 Aligned_cols=61 Identities=23% Similarity=0.205 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecch
Q psy14232 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTAR 69 (112)
Q Consensus 9 LQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r 69 (112)
+|+.+.+||++|++++++.++|++++++++||+.|.+||..+++|++||++||+++|..+.
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~ 61 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEK 61 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccH
Confidence 4788999999999999999999999999999999999999999999999999999999764
No 6
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.25 E-value=3.9e-11 Score=81.09 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecchhhhhhHhhhh
Q psy14232 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTARMGRLLDKMSA 79 (112)
Q Consensus 10 Q~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r~~~~~~~~~~ 79 (112)
|+.+.+|+.++.+++.+..++++++.++++++.|.+||+.+++|.+||+.||+++|..++ ...++.+..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~-~~~~~~L~~ 69 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDK-EEAIEELEE 69 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhH-HHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999965 344444443
No 7
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=98.27 E-value=4.5e-06 Score=58.04 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----------------------CCCcceeecc-ceee
Q psy14232 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVH-----------------------LDLGWESSRD-GLKF 65 (112)
Q Consensus 10 Q~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~-----------------------dDa~VYKlVG-~v~~ 65 (112)
+.....+++++.+++.+..+++++..++.|.+.++++|+.++ ++.+||..|| ++++
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence 567889999999999999999999999999999999999998 8899999999 9998
Q ss_pred ecch
Q psy14232 66 CTAR 69 (112)
Q Consensus 66 k~~r 69 (112)
..+.
T Consensus 82 e~~~ 85 (129)
T cd00890 82 EKSL 85 (129)
T ss_pred EecH
Confidence 7654
No 8
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=98.05 E-value=2.3e-05 Score=56.41 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCcceeeccceeeecchh-----------
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVH---LDLGWESSRDGLKFCTARM----------- 70 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~---dDa~VYKlVG~v~~k~~r~----------- 70 (112)
..++++.....|++++.+++.+..++..+.+.+.|.+.+++.|+.++ ++..||.-+|.=.+..+++
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence 46889999999999999999999999999999999999999999998 6788999999666665555
Q ss_pred -hhhhHhhhhhhchhhhhHHHh
Q psy14232 71 -GRLLDKMSASAFDLFHDRQER 91 (112)
Q Consensus 71 -~~~~~~~~~~~~~~~~~~~~~ 91 (112)
|=.+.+=..+|-+.+.+|.+.
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~ 105 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEE 105 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHH
Confidence 444555556666666666554
No 9
>KOG4098|consensus
Probab=97.64 E-value=0.00012 Score=55.32 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecc
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTA 68 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~ 68 (112)
|+.-+.-+++|+.+..+++.+.+.--.||++++|-..|.+-|+.++++-+-|++||++++-+.
T Consensus 14 ~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErT 76 (140)
T KOG4098|consen 14 PSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERT 76 (140)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhh
Confidence 445567789999999999999999999999999999999999999999999999999998654
No 10
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=96.56 E-value=0.014 Score=41.14 Aligned_cols=56 Identities=13% Similarity=-0.022 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--Ccceeeccceee
Q psy14232 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD--LGWESSRDGLKF 65 (112)
Q Consensus 10 Q~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD--a~VYKlVG~v~~ 65 (112)
+.....+++++++++.+..++..|...+.|.+.+++.|+.++++ ..++--+|+-++
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~ 59 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSF 59 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeE
Confidence 56778899999999999999999999999999999999999864 455555564444
No 11
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=94.85 E-value=0.17 Score=35.68 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy14232 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHL 52 (112)
Q Consensus 10 Q~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~d 52 (112)
+.....+++++.+++.+..+...+..++.|.+.+++.|+.+++
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999999999999999976
No 12
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.59 Score=35.29 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---cceeeccceeeecchhh
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDL---GWESSRDGLKFCTARMG 71 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa---~VYKlVG~v~~k~~r~~ 71 (112)
+..++++++..+++|.++.+++.+-.+-..|..-++|...+++-|+.++... .+---||+-.+-.+++.
T Consensus 2 ~~~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~ 73 (145)
T COG1730 2 AQTQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVK 73 (145)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEec
Confidence 3457889999999999999999999999999999999999999999987776 77777786555555443
No 13
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=92.69 E-value=1 Score=28.55 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhcCCCCcceeec
Q psy14232 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNEN--------ESVQKYCNIVHLDLGWESSR 60 (112)
Q Consensus 11 ~el~k~QqLQkeLQklv~qRQqLEaQL~EN--------e~VleELe~L~dDa~VYKlV 60 (112)
..-.+++.+++++.++-.....|..++... +.+.++|....|+..||+.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~~~ 78 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFKIP 78 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEeCC
Confidence 334445555666666666666666655554 45666888899999999865
No 14
>PRK14011 prefoldin subunit alpha; Provisional
Probab=92.40 E-value=0.95 Score=33.94 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceee
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKF 65 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~ 65 (112)
..++|..+..++.++++++.+-.+-+.|..-.+|.....+-|+.++++..|.--+|+=++
T Consensus 2 ~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~y 61 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAF 61 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcE
Confidence 356889999999999999999999999999999999999999999888888877775333
No 15
>KOG3501|consensus
Probab=92.11 E-value=0.22 Score=36.69 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecchh---hhhhHhhh
Q psy14232 18 QCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTARM---GRLLDKMS 78 (112)
Q Consensus 18 qLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r~---~~~~~~~~ 78 (112)
.-|+++-.+.-+-.+++-++.-.+...+|+..+-|+.+||..+|..++.+|+- |.+.-+|.
T Consensus 14 dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k 77 (114)
T KOG3501|consen 14 DTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMK 77 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 34555666666777777788888889999999999999999999999998875 45555553
No 16
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.02 E-value=2.6 Score=27.74 Aligned_cols=45 Identities=27% Similarity=0.315 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCN 48 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe 48 (112)
+||..|+.++..=|.++.+|.++-..=..++..|+|.+.=..+|.
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~ 45 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELE 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999999998776655553
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.71 E-value=6.5 Score=27.76 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=19.0
Q ss_pred HHHHHHhhhcCCCCcceeeccc
Q psy14232 41 ESVQKYCNIVHLDLGWESSRDG 62 (112)
Q Consensus 41 e~VleELe~L~dDa~VYKlVG~ 62 (112)
+.+.++|..+.++..||.++.+
T Consensus 69 e~AR~~Lg~vk~gEivy~~~~~ 90 (105)
T PRK00888 69 ERARNELGMVKPGETFYRIVPD 90 (105)
T ss_pred HHHHHHcCCCCCCCEEEEeCCC
Confidence 3577899999999999999886
No 18
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=74.90 E-value=3.6 Score=28.14 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCcceeeccceeeecch
Q psy14232 20 QKEYQKVLNQRQLLSAQLNENESVQKYCNIVHL---DLGWESSRDGLKFCTAR 69 (112)
Q Consensus 20 QkeLQklv~qRQqLEaQL~ENe~VleELe~L~d---Da~VYKlVG~v~~k~~r 69 (112)
+.+++.+-.+...+..++.|...+++-|+.++. +..++=-+|+-.+..++
T Consensus 2 ~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~ 54 (120)
T PF02996_consen 2 QEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGK 54 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEE
Confidence 345666777777788888888888887777766 56666666655554443
No 19
>KOG1760|consensus
Probab=74.49 E-value=17 Score=27.51 Aligned_cols=68 Identities=9% Similarity=0.119 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CcceeeccceeeecchhhhhhHhhh
Q psy14232 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD-LGWESSRDGLKFCTARMGRLLDKMS 78 (112)
Q Consensus 10 Q~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD-a~VYKlVG~v~~k~~r~~~~~~~~~ 78 (112)
|..+++|-.+-.....+-.--...-.++.-.+-|..|+.++++| ..|==.||.++|-... -++.|.+-
T Consensus 19 Qq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~-~~~~~~LE 87 (131)
T KOG1760|consen 19 QQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKL-DKLQDQLE 87 (131)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccH-HHHHHHHH
Confidence 44455555554443333333333344455566788899999998 6777789998886543 23344433
No 20
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=67.61 E-value=24 Score=31.53 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14232 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCN 48 (112)
Q Consensus 9 LQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe 48 (112)
+-...+++|.+|..+-.++.+|+||++|+.-.-.-.++|.
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678999999999999999999999987665556654
No 21
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=65.92 E-value=17 Score=26.54 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKY 46 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleE 46 (112)
-+|...+.+|.++|++++.++..|..-+.+-+|...-++.
T Consensus 19 s~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~ 58 (107)
T PRK15365 19 MQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHN 58 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3588889999999999999999999999998888776654
No 22
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=64.10 E-value=48 Score=26.16 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecchhhhhhHhhhhhh
Q psy14232 11 NELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTARMGRLLDKMSASA 81 (112)
Q Consensus 11 ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r~~~~~~~~~~~~ 81 (112)
.+.+.|..+-..|..+..+|+++...+.--+..+.-|+-++++.. .+=-|+..+.+.+.+=|++||--.
T Consensus 139 e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~--~IQ~NLvtr~g~l~~El~rmR~Ll 207 (213)
T PF13093_consen 139 EEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQE--NIQPNLVTRDGELEAELERMRMLL 207 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcc--ccccccCCCCchHHHHHHHHHHHH
Confidence 467889999999999999999999999998888888887766655 222356677788888888887543
No 23
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=62.32 E-value=20 Score=27.72 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceee
Q psy14232 16 FKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESS 59 (112)
Q Consensus 16 ~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKl 59 (112)
+..+...|+..++...-||.+|.|=+....|+..|.|+.-=-|.
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999888888888877644443
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.49 E-value=53 Score=21.96 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
+.|..+++..++.+..||.+...+-..-..|. .||+....|-..|..+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~---~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELK---EENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHH
Confidence 56788899999999999999988887766666 6677777777666533
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.37 E-value=63 Score=26.47 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCN 48 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe 48 (112)
.+++...-.+++.++..+..+-..++.+.++++|.+.+.++..
T Consensus 229 k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555556666666666777777777777777776666443
No 26
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=57.01 E-value=29 Score=23.99 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecchhhhhhHhhhh
Q psy14232 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTARMGRLLDKMSA 79 (112)
Q Consensus 15 k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r~~~~~~~~~~ 79 (112)
+++.+..++.+.-..+..+.+.|.+.+.-+.|++.+ .|-.+|.++-+..+-..-+|..+..
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~----EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENL----EIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 577888999999999999999999999999998875 4888888888888888888877654
No 27
>PRK15352 type III secretion system protein SsaO; Provisional
Probab=54.48 E-value=82 Score=23.20 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLN 38 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ 38 (112)
+.+-.+.|.=+.+-|++..++|.++++|..|..-.|
T Consensus 70 a~lftqaqsfltqrqql~nqyqqlvs~~s~lq~n~n 105 (125)
T PRK15352 70 AGLFTQAQSFLTQRQQLENQYQQLVSRRSELQKNFN 105 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677777777777777777766544333
No 28
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=54.39 E-value=69 Score=22.05 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNI 49 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~ 49 (112)
.+-..+...+..+.+...+++..+.+--++|.|..+-+.+-.+|+.
T Consensus 42 ~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ 87 (99)
T PF10046_consen 42 DIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDE 87 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777777777777777777777788888887777764
No 29
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.17 E-value=27 Score=21.89 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCccee
Q psy14232 13 LNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIV-HLDLGWES 58 (112)
Q Consensus 13 l~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L-~dDa~VYK 58 (112)
+..+.+++.+ +.....+++..-.||+....|++.| .+++.|-+
T Consensus 16 ~~~~~~~~~e---i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 16 YSRYYQLNQE---IAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3444555554 4456677788888999999999999 66655544
No 30
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=53.71 E-value=80 Score=23.70 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
..|..+++.....++++..+|..+...|..|..++.+-..=..||+.+..+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345555666666666666666666666666666666666666666655433
No 31
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.16 E-value=99 Score=24.17 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14232 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYC 47 (112)
Q Consensus 8 kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleEL 47 (112)
+-+....+|.++..++..+-....+++.++...+....+|
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554444444443
No 32
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=50.52 E-value=62 Score=22.98 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQ 44 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~Vl 44 (112)
+...++.--..++.++.+++.+-.....+..-+...+.+.
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445555555566666666665555555554444444
No 33
>KOG3129|consensus
Probab=50.34 E-value=26 Score=28.71 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 18 QCQKEYQKVLNQRQLLSAQLNENESVQK 45 (112)
Q Consensus 18 qLQkeLQklv~qRQqLEaQL~ENe~Vle 45 (112)
..-.+++.++..|..+|+|++|+..|++
T Consensus 18 ~~~~~~~eLm~~K~eiE~qin~~~~vL~ 45 (231)
T KOG3129|consen 18 NTKSELKELMDKKTEIETQINELVEVLE 45 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999986
No 34
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=49.04 E-value=43 Score=24.30 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=5.6
Q ss_pred chhhhhhHhh
Q psy14232 68 ARMGRLLDKM 77 (112)
Q Consensus 68 ~r~~~~~~~~ 77 (112)
..|++|||+|
T Consensus 91 ~~inkRLD~~ 100 (102)
T PF01519_consen 91 QSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 3456666655
No 35
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=47.68 E-value=80 Score=22.18 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNE 39 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~E 39 (112)
..+.++..+|..|+.++..+...=++|+++|+.
T Consensus 15 ~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~ 47 (101)
T PF07303_consen 15 AEFNDDYDEYKELHAEVDAVSRRFQELDSELKR 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999999999999999888888887653
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.68 E-value=1.1e+02 Score=25.50 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIV 50 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L 50 (112)
..++++.-.+++.+...+......++.+.++++|.+.+.++....
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~ 268 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGF 268 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555566666666777777788888888888888887765543
No 37
>KOG0976|consensus
Probab=47.32 E-value=1e+02 Score=30.34 Aligned_cols=36 Identities=25% Similarity=0.086 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14232 13 LNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCN 48 (112)
Q Consensus 13 l~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe 48 (112)
-...+.+..++|++-.+|+-++.++.||+.-++++.
T Consensus 112 Qn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~ 147 (1265)
T KOG0976|consen 112 QNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLN 147 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345567788999999999999999999999877764
No 38
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=46.86 E-value=3.2 Score=29.35 Aligned_cols=60 Identities=12% Similarity=-0.015 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhcCCC----Ccceeeccceeeecchh
Q psy14232 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKY-------CNIVHLD----LGWESSRDGLKFCTARM 70 (112)
Q Consensus 10 Q~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleE-------Le~L~dD----a~VYKlVG~v~~k~~r~ 70 (112)
...+.+...+..+++.+-.....|-.++.|.+....+ -....+. .++|+.+| |.+-.+.-
T Consensus 9 ~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~~~~~~~~~~~~~d~~vlklkLYrsLG-I~~e~~~~ 79 (118)
T PF08286_consen 9 FRLAKELSDLESELESLQSELEELKEELEELEEQEVEGEEVDEDTTEEIDSNVLKLKLYRSLG-IELEYDED 79 (118)
T ss_dssp ----------------------------------HT------CCCCCHHCCCHHHHHHHHHCC-EEEEC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCcccchHHHHHHHHHhCc-EEEEeccc
Confidence 3344444444444444444444444444444443333 1111111 26788999 77766443
No 39
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=46.51 E-value=1.1e+02 Score=25.22 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhc
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQ----LNENESVQKYCNIV 50 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQ----L~ENe~VleELe~L 50 (112)
+.++.........+++.++++.+..|.+||+= ...|+.+++|-..+
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666778889999999999999999986 34577777776654
No 40
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=46.25 E-value=1.1e+02 Score=26.75 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
+..+++....+++.++++++++...+..++.++...+--.+||+.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 4556777778888888888888777777777777777777777777665
No 41
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=45.05 E-value=67 Score=25.76 Aligned_cols=42 Identities=24% Similarity=0.486 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 2 m~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
|.++..++|..+.+++.|...-+++. .||+...+.+-+|++|
T Consensus 43 m~evNrrlQ~hl~EIR~LKe~NqkLq----------edNqELRdLCCFLDdd 84 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLKEVNQKLQ----------EDNQELRDLCCFLDDD 84 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHcccchh
Confidence 55666777777777777776666554 6888888888999886
No 42
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.76 E-value=85 Score=20.59 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKY 46 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleE 46 (112)
..+++..-.+++.+..+++.+-.+...++.-+.|.+.+-++
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34444444445555555555555555544444444444433
No 43
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=43.94 E-value=94 Score=21.73 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQL 37 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL 37 (112)
+.|..+|...+..||.+|.++..-. |.++..|+
T Consensus 91 ~~L~~~f~~~m~~fq~~Q~~~~~~~--k~~i~Rq~ 123 (151)
T cd00179 91 SGLSKKFVEVMTEFNKAQRKYRERY--KERIQRQL 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3466778888888888888887554 55555553
No 44
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.93 E-value=1.2e+02 Score=21.85 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecchhhhhhHhhhhhh
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTARMGRLLDKMSASA 81 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r~~~~~~~~~~~~ 81 (112)
+.+..--..++.+-+..+.++..++.+-.-+.|--.+...|...++... |++--.-.++|+..+.+....
T Consensus 11 ~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~-----~~l~~~~~~~~~~~~~~~~~~ 80 (218)
T cd07596 11 DYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVG-----GELGEALSKLGKAAEELSSLS 80 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----hhhHHHHHHHHHHHHHHHHHH
Confidence 3444444566677778888888888888888888888888888876654 455555566666666665544
No 45
>PRK11637 AmiB activator; Provisional
Probab=43.06 E-value=1.5e+02 Score=25.02 Aligned_cols=8 Identities=13% Similarity=0.081 Sum_probs=3.5
Q ss_pred eeeecchh
Q psy14232 63 LKFCTARM 70 (112)
Q Consensus 63 v~~k~~r~ 70 (112)
+++..+.+
T Consensus 144 vLl~a~~~ 151 (428)
T PRK11637 144 LILSGEES 151 (428)
T ss_pred HHhcCCCh
Confidence 44444433
No 46
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=42.65 E-value=1.7e+02 Score=23.04 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy14232 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHL 52 (112)
Q Consensus 9 LQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~d 52 (112)
+.+..++.+.|+++...+-....+++.-..||+..++-|+.-..
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~ 114 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKES 114 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 44555666666777777777777777777777777776665443
No 47
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.33 E-value=1.3e+02 Score=24.86 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENES 42 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~ 42 (112)
..+.++...-+++..++.+++.....+++|+.+...++.
T Consensus 239 ~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 239 EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666777777777777777777777777665443
No 48
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=41.25 E-value=92 Score=22.90 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcC-CCCcceeec-cceeee-cchhhhh
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLL------SAQLNENESVQKYCNIVH-LDLGWESSR-DGLKFC-TARMGRL 73 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqL------EaQL~ENe~VleELe~L~-dDa~VYKlV-G~v~~k-~~r~~~~ 73 (112)
+.|+|.|+.-.+++-.+...+..+...-.-- .+.+..-..-++|++..- .|.+-.-.- |++.-. .+-+.-+
T Consensus 3 e~i~~~L~pi~ekLisIrR~L~~~~t~~k~~~~~~~~~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~gQ~~l~~L 82 (134)
T PF10303_consen 3 EPISPELQPIYEKLISIRRSLLSLNTRSKFSDSSEESSSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPGGQAVLNGL 82 (134)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcchHHHHHHH
Confidence 4678899999999999999998887655444 566777777777777766 555444443 566555 5555555
Q ss_pred hHhhhhhhchhhhhHHHhhhc
Q psy14232 74 LDKMSASAFDLFHDRQERERG 94 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~ 94 (112)
|| ..|++.++=.++..|
T Consensus 83 Ld----~C~~li~dl~~~~~~ 99 (134)
T PF10303_consen 83 LD----DCFDLIEDLLERKGE 99 (134)
T ss_pred HH----HHHHHHHHHHHhccc
Confidence 54 567777777666554
No 49
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=40.61 E-value=88 Score=21.67 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQ 44 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~Vl 44 (112)
..+++.--.++..++.++..+-.....++.-+...+.+.
T Consensus 5 ~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~ 43 (126)
T TIGR00293 5 AAELQILQQQVESLQAQIAALRALIAELETAIETLEDLK 43 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444445555555555555555555444444443
No 50
>PF15294 Leu_zip: Leucine zipper
Probab=40.36 E-value=1.2e+02 Score=25.36 Aligned_cols=69 Identities=25% Similarity=0.292 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceeeecchhhhhhHhhhhh
Q psy14232 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKFCTARMGRLLDKMSAS 80 (112)
Q Consensus 2 m~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~k~~r~~~~~~~~~~~ 80 (112)
+..|+.+-+..-+.++.++++...++..+.+++.+|++...+...... ...+.++..-++.+=++|.+-
T Consensus 134 i~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~----------k~~~~~~~q~l~dLE~k~a~l 202 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKG----------KKDLSFKAQDLSDLENKMAAL 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------cccccccccchhhHHHHHHHH
Confidence 345566666667778888888889999999999999888875544432 233344555555555555543
No 51
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.32 E-value=1.3e+02 Score=25.55 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENE 41 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe 41 (112)
|..+++..+.+|+..|.+++.+-..-.++..-.+|-.
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4556777777777777777666666555554444433
No 52
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.95 E-value=1.6e+02 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 16 FKQCQKEYQKVLNQRQLLSAQLNENES 42 (112)
Q Consensus 16 ~QqLQkeLQklv~qRQqLEaQL~ENe~ 42 (112)
.++|++++..+-..-.+++.|+.+...
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333344444444333
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.71 E-value=1.3e+02 Score=27.83 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14232 8 KLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYC 47 (112)
Q Consensus 8 kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleEL 47 (112)
.-|.+-..+++|.+.|..-..+|+.+|+||+|-+..+.+=
T Consensus 482 aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 482 ARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455556677788888888899999999999998887763
No 54
>PRK01203 prefoldin subunit alpha; Provisional
Probab=39.09 E-value=1.6e+02 Score=21.90 Aligned_cols=49 Identities=12% Similarity=-0.050 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCcceeecc
Q psy14232 13 LNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVH--LDLGWESSRD 61 (112)
Q Consensus 13 l~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~--dDa~VYKlVG 61 (112)
.++|+-++.+.+.+-++-+.|....+|.....+-|+.++ .+..|.-=+|
T Consensus 6 ~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg 56 (130)
T PRK01203 6 EAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIG 56 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEcc
Confidence 445555555555555566666666666666666666653 4455554444
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.82 E-value=1.2e+02 Score=23.77 Aligned_cols=15 Identities=0% Similarity=-0.113 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhcCC
Q psy14232 38 NENESVQKYCNIVHL 52 (112)
Q Consensus 38 ~ENe~VleELe~L~d 52 (112)
+|++....|++.+.+
T Consensus 153 ~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 153 KKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 56
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=38.27 E-value=1.8e+02 Score=23.06 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14232 5 VQKKLENELNLFKQCQK----EYQKVLNQRQLLSAQLNENESVQKYCNIV 50 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQk----eLQklv~qRQqLEaQL~ENe~VleELe~L 50 (112)
++-+|.++-..|+.||+ ++..+-++.+.|..||+.+..-+|-|..+
T Consensus 110 lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDI 159 (179)
T PF13942_consen 110 LQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDI 159 (179)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 45567888899999995 78899999999999999988877766543
No 57
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=36.99 E-value=1.1e+02 Score=19.55 Aligned_cols=32 Identities=9% Similarity=-0.096 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCcceee
Q psy14232 28 NQRQLLSAQLNENESVQKYCNIVHLDLGWESS 59 (112)
Q Consensus 28 ~qRQqLEaQL~ENe~VleELe~L~dDa~VYKl 59 (112)
...++++..-.||...+.|.+.|.+++-|.++
T Consensus 35 ~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~ 66 (85)
T TIGR02209 35 KLQLEIDKLQKEWRDLQLEVAELSRHERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 33444555556666666666666665555543
No 58
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=1.7e+02 Score=22.12 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNEN 40 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~EN 40 (112)
+.|.++++..-...+++++.++++.+...+++.++++.
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888888999988888888877764
No 59
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.29 E-value=1.7e+02 Score=21.31 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQ 44 (112)
Q Consensus 2 m~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~Vl 44 (112)
++.|+..+...=.+++.+|.++..+..+|..+..++-..-.-.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666667788888999999988888877764433333
No 60
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=36.16 E-value=86 Score=20.95 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14232 7 KKLENELNLFKQCQKEYQKVL 27 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv 27 (112)
|.++..+..|+.+|.+++..-
T Consensus 33 ~e~~~l~~~f~~~q~~~~~~q 53 (108)
T PF06133_consen 33 PEAQKLIEEFQKLQQELQNAQ 53 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 668888999999998887643
No 61
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.01 E-value=65 Score=20.92 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 18 QCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 18 qLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
.++.++.++-.. +.+..+||+.+.++++.+++.
T Consensus 4 elEn~~~~~~~~---i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 4 ELENELPRIESS---INTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444 666667777777777776643
No 62
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=35.54 E-value=70 Score=24.31 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhcCCC
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESV----QKYCNIVHLD 53 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~V----leELe~L~dD 53 (112)
.+.|+++..|+.+..+|+ ++......|.|+..+ .+||+.|..+
T Consensus 3 sLeP~iE~LInrInelQQ-------aKKk~~EELgEa~~l~eaL~~ELDsL~~E 49 (134)
T PF15233_consen 3 SLEPQIEDLINRINELQQ-------AKKKSSEELGEAQALWEALQRELDSLNGE 49 (134)
T ss_pred CccchHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466888888888877776 556666667766554 4466666544
No 63
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=35.42 E-value=17 Score=27.42 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccce
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGL 63 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v 63 (112)
.+.+..-.+.|..|.+++.+...-..= +..-.-.+.++..++.|+ +..|||-+|.+
T Consensus 70 k~~i~Sl~~~f~~lk~~l~~C~~~~~C-e~~~~a~~qi~~~f~kl~-~kG~~KAmgEl 125 (137)
T smart00188 70 KEHVNSLGEKLKTLRLRLRRCHRFLPC-ENKSKAVEQVKNAFNKLQ-EKGVYKAMSEF 125 (137)
T ss_pred hhhHHHHHHHHHHHHHHHHHCccccCc-cchhHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 344666778888888888887432222 223333667889999999 99999999864
No 64
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=34.66 E-value=1.3e+02 Score=19.78 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESV 43 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~V 43 (112)
-+.|.+..--+.++.+.+.=..+..+-.++...|.++..+
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~ 50 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEV 50 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443333333333333333444444444444443
No 65
>PF00726 IL10: Interleukin 10 This family is a subset of the SCOP family; InterPro: IPR020443 Interleukin-10 (IL-10) is a protein that inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells. Structurally, IL-10 is a protein of about 160 amino acids that contains four conserved cysteines involved in disulphide bonds []. IL-10 is highly similar to the Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BCRF1 protein which inhibits the synthesis of gamma-interferon and to Equid herpesvirus 2 (Equine herpesvirus 2) protein E7. It is also similar, but to a lesser degree, with human protein mda-7 [], a protein which has antiproliferative properties in human melanoma cells. Mda-7 only contains two of the four cysteines of IL-10.; PDB: 1VLK_A 1Y6N_L 1Y6M_L 2ILK_A 1LK3_A 2H24_A 1J7V_L 1ILK_A 1Y6K_L 1INR_A ....
Probab=34.50 E-value=7.2 Score=30.03 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccce
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGL 63 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v 63 (112)
+...+-.-.+.|..++++++.......= +..-...+.++..++.|++ ..|||.+|.+
T Consensus 101 ~~~~isslansf~~lk~~L~~C~~~~~C-~~~~~a~~~i~~~f~kL~~-~g~~KA~GEl 157 (170)
T PF00726_consen 101 IKRKISSLANSFLSLKKDLRQCHRFLPC-ENKSKAIEQIKRTFNKLEE-KGVYKAMGEL 157 (170)
T ss_dssp GHHHHHHHHHHHHHHHHHHHCSTTCCGG-GCHHHHHHHHHHHHHCTTH-HHHHHHHHTH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHhcCCC-CCchHHHHHHHHHHhccch-hhHHHHHHHH
Confidence 3455666778899999998876521111 1112457789999999985 6799999965
No 66
>PHA03373 tegument protein; Provisional
Probab=34.44 E-value=1.5e+02 Score=24.66 Aligned_cols=68 Identities=19% Similarity=0.328 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHH------HHHHHHHHHHHHHHHHHhhhcCCCCcceee-ccceeee-cchhhhhhHh
Q psy14232 8 KLENELNLFKQCQKE---YQKVLNQ------RQLLSAQLNENESVQKYCNIVHLDLGWESS-RDGLKFC-TARMGRLLDK 76 (112)
Q Consensus 8 kLQ~el~k~QqLQke---LQklv~q------RQqLEaQL~ENe~VleELe~L~dDa~VYKl-VG~v~~k-~~r~~~~~~~ 76 (112)
.|=..+=-|++.+.. |..++.. |-.+|.+..-.+.+++-|+. .|.|+ ||.+-|+ +|.+-++|+|
T Consensus 67 hLL~LLP~Yk~c~~r~~~L~r~L~~~C~pH~r~AaevEc~KsqrIleaLDV-----vilKl~vGEFtmse~dsle~LL~K 141 (247)
T PHA03373 67 HLLQLLPIYKQCKSRYTFLERCLANGCPPHVRPAAEVECMKSKRILEALDV-----VILKLLVGEFTMSETDSLNRLLEK 141 (247)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHH-----HHHHHHHhccccCcchHHHHHHHH
Confidence 344455567777776 6666655 77788888888888888876 47775 7999999 8899999999
Q ss_pred hhhh
Q psy14232 77 MSAS 80 (112)
Q Consensus 77 ~~~~ 80 (112)
.|..
T Consensus 142 FStD 145 (247)
T PHA03373 142 FSTD 145 (247)
T ss_pred hccc
Confidence 8864
No 67
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.89 E-value=2e+02 Score=21.44 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
..+...-..++.+.+....++..|+.+-..+.|--.+...|...+++
T Consensus 31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 33555566677777888888888888888888888888888888777
No 68
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=33.10 E-value=2.1e+02 Score=22.74 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNI 49 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~ 49 (112)
.+|+..++.|..+|..+..++..=.++-.++.+.-...++|..
T Consensus 2 ~eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~ 44 (201)
T cd07660 2 LELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGD 44 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999988888888764
No 69
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=32.58 E-value=1.4e+02 Score=26.13 Aligned_cols=43 Identities=2% Similarity=0.159 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCN 48 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe 48 (112)
-..+|+-..+||.+..++.+++.+-.+....|.++..+++++-
T Consensus 129 ~~siqe~~~kYQt~~~~id~I~~~l~k~kd~L~~dn~~Le~l~ 171 (386)
T COG3853 129 KSSIQEIFSKYQTIGAQIDRIIESLSKGKDELTRDNKMLELLY 171 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHH
Confidence 3568999999999999999999999999999999888887654
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.03 E-value=2.2e+02 Score=23.26 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy14232 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDL 54 (112)
Q Consensus 15 k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa 54 (112)
++..++.+++.+-.....+..+.++...-..|++..-+..
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777777777777777777777777767766655443
No 71
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.35 E-value=1.9e+02 Score=22.68 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q psy14232 10 ENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLG 55 (112)
Q Consensus 10 Q~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~ 55 (112)
-+.+..+.++.++...+-.+-.+|+.++.+.+..++|.+.|..--.
T Consensus 65 ~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 65 FESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677788888888888888888888888888888877765433
No 72
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.98 E-value=64 Score=22.20 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcce-eeccce
Q psy14232 26 VLNQRQLLSAQLNENESVQKYCNIVHLDLGWE-SSRDGL 63 (112)
Q Consensus 26 lv~qRQqLEaQL~ENe~VleELe~L~dDa~VY-KlVG~v 63 (112)
+...+..|+.-.+..+.|++|.+.|..++.+- .-||++
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566677777777776666543 234444
No 73
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.39 E-value=2.6e+02 Score=21.88 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
+.|+.+|-..-..+..++++++.+-.-+..=+.|-.|.....+|+..+..+
T Consensus 50 ~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e 100 (206)
T PF14988_consen 50 SELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAE 100 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556667777777777777777777888888888888776554
No 74
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.32 E-value=1.9e+02 Score=20.22 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 23 YQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 23 LQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
-+.+...+++++....+|.....|++.|.++
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3444556667777778888889999999876
No 75
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.17 E-value=1.4e+02 Score=20.38 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 17 QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
|++..+++.+-...+.+.++++..+.-+.|.+.+.++
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~E 38 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEE 38 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888888888776654
No 76
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=28.52 E-value=2.2e+02 Score=20.18 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhcCCCCcceeeccc
Q psy14232 18 QCQKEYQKVLNQRQLLSAQLNE--------NESVQKYCNIVHLDLGWESSRDG 62 (112)
Q Consensus 18 qLQkeLQklv~qRQqLEaQL~E--------Ne~VleELe~L~dDa~VYKlVG~ 62 (112)
+.++++.++...+..++++.+- .+.+..++....|+..+|.++..
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~~~~gEi~f~i~~~ 113 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGMSKPGEIFFRLVKP 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCCCCCEEEEeccc
Confidence 6667777777777777766543 24556677777778888877764
No 77
>KOG3392|consensus
Probab=28.45 E-value=29 Score=26.36 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=22.9
Q ss_pred HHHHHHhhhcCCCCcceeecc---------------------ceeeecchhhhhhHh
Q psy14232 41 ESVQKYCNIVHLDLGWESSRD---------------------GLKFCTARMGRLLDK 76 (112)
Q Consensus 41 e~VleELe~L~dDa~VYKlVG---------------------~v~~k~~r~~~~~~~ 76 (112)
+.|++|+..+-+|+.|.|--. .+.|.+.+.|.+.|-
T Consensus 55 e~vl~e~kriv~dsei~kedd~nwp~pd~~gkqelei~~~~ehisf~t~kigsladv 111 (147)
T KOG3392|consen 55 ESVLEELKRIIDDSEIMKEDDANWPPPDRVGRQELEIVIGDEHISFTTSKIGSLADV 111 (147)
T ss_pred HHHHHHHHHHhhhhhhhhccccCCcCCCcccceeEEEEECCeEEEEEeccccceeec
Confidence 456666666666666655322 467777777777664
No 78
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=28.05 E-value=2.2e+02 Score=24.04 Aligned_cols=45 Identities=13% Similarity=-0.107 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CCCCcceeeccceeeecchhhh
Q psy14232 28 NQRQLLSAQLNENESVQKYCNIV-HLDLGWESSRDGLKFCTARMGR 72 (112)
Q Consensus 28 ~qRQqLEaQL~ENe~VleELe~L-~dDa~VYKlVG~v~~k~~r~~~ 72 (112)
.++..++.|+.-.+.=++|++.+ ......=-+.|.++|..++..-
T Consensus 273 ~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~~~~ 318 (406)
T PF02388_consen 273 NKLKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGDEAY 318 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECCEEE
Confidence 34566666666666666666664 3333344577788887776543
No 79
>KOG3047|consensus
Probab=27.47 E-value=1.7e+02 Score=22.58 Aligned_cols=58 Identities=9% Similarity=-0.032 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh-------hcCCCCcceeecc
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQK---YCN-------IVHLDLGWESSRD 61 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~Vle---ELe-------~L~dDa~VYKlVG 61 (112)
-|+|.+-.+.+.+.++|+++.+.+.-|-..+--+++.-.-.+ +|. .++|...||--.|
T Consensus 27 Vih~di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~ 94 (157)
T KOG3047|consen 27 VIHPDIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALC 94 (157)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEee
Confidence 478889999999999999999999988877766655432221 221 2466667776665
No 80
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=27.45 E-value=2.3e+02 Score=20.05 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14232 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIV 50 (112)
Q Consensus 9 LQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L 50 (112)
|-.--.++..|..++.++......++.+|.-.+.-..||+.+
T Consensus 52 Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~ 93 (116)
T PF05064_consen 52 LVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEEL 93 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777888888888888888888888888888888764
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.29 E-value=2.6e+02 Score=20.45 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 18 QCQKEYQKVLNQRQLLSAQLNENESVQ 44 (112)
Q Consensus 18 qLQkeLQklv~qRQqLEaQL~ENe~Vl 44 (112)
.+..++..+....+.+...+.+++...
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 82
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.02 E-value=3.3e+02 Score=21.41 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhhcC
Q psy14232 37 LNENESVQKYCNIVH 51 (112)
Q Consensus 37 L~ENe~VleELe~L~ 51 (112)
.+||....+||..+.
T Consensus 138 ~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 138 KEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666665543
No 83
>PRK10869 recombination and repair protein; Provisional
Probab=25.71 E-value=4.5e+02 Score=23.35 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVH 51 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~ 51 (112)
+-.+++....+|+.+.+++..+....+....++-..+--.+||+.++
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~ 201 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFA 201 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Confidence 33456666667777777776666555444444444444444444443
No 84
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.17 E-value=3.9e+02 Score=22.05 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14232 17 KQCQKEYQKVLNQRQLLSAQLNENESVQKYCN 48 (112)
Q Consensus 17 QqLQkeLQklv~qRQqLEaQL~ENe~VleELe 48 (112)
..+.+++..+-..+..++.++.+.+.-.++++
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555544444444333
No 85
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=24.81 E-value=3.6e+02 Score=22.17 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCN 48 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe 48 (112)
..++.-..+|+.++.++.+++..-..-..+|.++...++++-
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~ 125 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLY 125 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999888888888877777766543
No 86
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=24.51 E-value=1.2e+02 Score=24.91 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 13 LNLFKQCQKEYQKVLNQRQLLSAQ 36 (112)
Q Consensus 13 l~k~QqLQkeLQklv~qRQqLEaQ 36 (112)
.++||+.|++|.. .+||||+..
T Consensus 4 ~EQyQqHQqQL~~--MQkQQLaqi 25 (230)
T PF06752_consen 4 AEQYQQHQQQLVL--MQKQQLAQI 25 (230)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Confidence 3689999998864 566666543
No 87
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=24.23 E-value=2.4e+02 Score=20.24 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNEN 40 (112)
Q Consensus 9 LQ~el~k~QqLQkeLQklv~qRQqLEaQL~EN 40 (112)
.+..-..|..||..|..+-.+|+.|++--.|-
T Consensus 55 ~ee~R~~~E~lQdkL~qi~eAR~AlDalR~eH 86 (96)
T PF12210_consen 55 QEEKRVYYEGLQDKLAQIKEARAALDALREEH 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666778899999999999999998755543
No 88
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=24.19 E-value=1.9e+02 Score=19.63 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14232 7 KKLENELNLFKQCQKEYQKV 26 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQkl 26 (112)
+++++-+++++..+..+.++
T Consensus 17 ~~le~~l~~~~~~~~~~~~L 36 (90)
T PF14131_consen 17 EELEEALEKWQEAQPDYRKL 36 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 89
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.09 E-value=3.2e+02 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHL 52 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~d 52 (112)
.+++...+.+..+..++..+-...+.+...+++.+.-+..++....
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555566666666666666666666655555555443
No 90
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=23.82 E-value=96 Score=29.06 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=50.4
Q ss_pred HHHHHHHhhhcCCCCcceeeccceeeecchhhhhhHhhhhhhchhhhhHHHhhhcCcccccccccCCCC
Q psy14232 40 NESVQKYCNIVHLDLGWESSRDGLKFCTARMGRLLDKMSASAFDLFHDRQERERGSLSWYSKKSLDFPK 108 (112)
Q Consensus 40 Ne~VleELe~L~dDa~VYKlVG~v~~k~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (112)
++.|.+||..+=|++.|+++-++.....+....+|+.+.+..-|..---|.-- |.+|||.
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmia---------KG~~fp~ 552 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIA---------KGHDFPN 552 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhh---------cCCCccc
Confidence 57899999999999999999999999999999999999988877766555543 4478885
No 91
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=23.70 E-value=44 Score=23.57 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred ceeeecchhhhhhHhhhh---hhchhhhhHHHh
Q psy14232 62 GLKFCTARMGRLLDKMSA---SAFDLFHDRQER 91 (112)
Q Consensus 62 ~v~~k~~r~~~~~~~~~~---~~~~~~~~~~~~ 91 (112)
++..++.|+|++||-... .+|..|-+-+|-
T Consensus 44 t~~~r~~k~g~LLDIL~trG~~g~~aFLeSLe~ 76 (86)
T cd08806 44 RLTNRAMRVGHLLDLLKTRGKNGAIAFLESLKF 76 (86)
T ss_pred hHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 456788999999998875 577888777763
No 92
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=23.56 E-value=3.8e+02 Score=21.28 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNI 49 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~ 49 (112)
..++|+..++.|+..|..+..++..=.++-.++.+.-.+..+|..
T Consensus 31 ~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~ 75 (229)
T PF06456_consen 31 VDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGD 75 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999988888888887764
No 93
>KOG2264|consensus
Probab=23.53 E-value=2.5e+02 Score=26.82 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhc
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQL-LSAQLNENESVQKYCNIV 50 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQq-LEaQL~ENe~VleELe~L 50 (112)
++|+.+++++.+.+.++++.+.+.|+ |++-..|.+.+.--++.+
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 56889999999999999999887765 333334555444433333
No 94
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.20 E-value=2.6e+02 Score=19.27 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy14232 15 LFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLD 53 (112)
Q Consensus 15 k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dD 53 (112)
+++.+..++|.+-..-+.+.+|++..+.=+.|.+.+-+.
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888888888888887776543
No 95
>PHA02047 phage lambda Rz1-like protein
Probab=22.91 E-value=3.1e+02 Score=19.97 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 5 VQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKY 46 (112)
Q Consensus 5 Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleE 46 (112)
+-.+|++.=.++-.+|+..+++-.. -+++-+|.+.++++
T Consensus 39 la~qLE~a~~r~~~~Q~~V~~l~~k---ae~~t~Ei~~aL~~ 77 (101)
T PHA02047 39 QTARLEALEVRYATLQRHVQAVEAR---TNTQRQEVDRALDQ 77 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 3344444445555555555554433 55666666666554
No 96
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=22.90 E-value=2.2e+02 Score=19.11 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcC
Q psy14232 21 KEYQKVLNQRQLLSAQLNENES--VQKYCNIVH 51 (112)
Q Consensus 21 keLQklv~qRQqLEaQL~ENe~--VleELe~L~ 51 (112)
++|..++..|++|+.+|...|. -..|=..|+
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777765543 333444444
No 97
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.83 E-value=4.4e+02 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNI 49 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~ 49 (112)
.+..+.+.++.++++++++...+-..-..|...+.+....++.|..
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888888777777666777777776666665544
No 98
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.56 E-value=2.5e+02 Score=18.77 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQL 37 (112)
Q Consensus 7 ~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL 37 (112)
+.+...-++++.++.++..+-..+.-+++++
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 99
>PRK00708 sec-independent translocase; Provisional
Probab=22.38 E-value=4.1e+02 Score=21.32 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy14232 2 VEEVQKKLENELN--LFKQCQKEYQKVL--NQRQLLSAQLNENESVQKY 46 (112)
Q Consensus 2 m~~Lq~kLQ~el~--k~QqLQkeLQklv--~qRQqLEaQL~ENe~VleE 46 (112)
+++++.+++.++. +++++.+.++.+- .-|+.+...+++.....++
T Consensus 43 a~e~r~~~~e~~~~~eldd~~k~~~~~~~ldp~~~l~~~~~~l~~~~~~ 91 (209)
T PRK00708 43 AGEFRRQFDEALREAELDDVRQTISDARSLNPRTSLRQAMNPLRQAGNE 91 (209)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4455555555444 3555554444331 1233444444444444333
No 100
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=22.38 E-value=2.4e+02 Score=24.03 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 1 MVEEVQKKLENELNLFKQCQKEYQKVLNQ 29 (112)
Q Consensus 1 Mm~~Lq~kLQ~el~k~QqLQkeLQklv~q 29 (112)
+|+.||+.++..+..++.+|.++.++-..
T Consensus 31 ~i~~Lp~~~~~rv~aL~~lQ~e~~~le~e 59 (337)
T PTZ00007 31 KLSHLTDEQRETLKKLQLLQKEFDDLEVE 59 (337)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678999999999999999888776554
No 101
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=21.88 E-value=4.4e+02 Score=21.46 Aligned_cols=57 Identities=9% Similarity=0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeeccceee
Q psy14232 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRDGLKF 65 (112)
Q Consensus 9 LQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG~v~~ 65 (112)
+++...+.+.+..++..+......+++=-+||+..++.|+.-..-..-.+..+.|+.
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~~~a~Vi~ 124 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSSDYDPIAARVIS 124 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccceeeEEEE
Confidence 344444555555555555555555666666777777777664444334444554443
No 102
>KOG1507|consensus
Probab=21.83 E-value=93 Score=27.07 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 1 MVEEVQKKLENELNLFKQCQKEYQKV 26 (112)
Q Consensus 1 Mm~~Lq~kLQ~el~k~QqLQkeLQkl 26 (112)
|++.||+.+++-+..+++||.+.-.+
T Consensus 67 ~v~~Lp~~Vk~Rv~aLk~lQ~~~~~i 92 (358)
T KOG1507|consen 67 MVENLPPAVKNRVLALKNLQLECDEI 92 (358)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999765543
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.76 E-value=4.9e+02 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 4 EVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENE 41 (112)
Q Consensus 4 ~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe 41 (112)
.|+.+++....+...+..++..+-....+++.++.+-+
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~ 369 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKE 369 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554444433
No 104
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=21.44 E-value=41 Score=23.76 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=20.6
Q ss_pred eeeecchhhhhhHhhhhh---hchhhhhHHH
Q psy14232 63 LKFCTARMGRLLDKMSAS---AFDLFHDRQE 90 (112)
Q Consensus 63 v~~k~~r~~~~~~~~~~~---~~~~~~~~~~ 90 (112)
+-....|+|++||-+..- +|..|-+-+|
T Consensus 45 ~~~~~~kvg~LLDIL~~rG~~~f~aFLeSLE 75 (86)
T cd08809 45 LVIRKRKVGVLLDILQRTGLKGYEAFLESLE 75 (86)
T ss_pred cchHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 356678999999998765 5666666555
No 105
>PRK15352 type III secretion system protein SsaO; Provisional
Probab=21.43 E-value=3.4e+02 Score=19.97 Aligned_cols=29 Identities=28% Similarity=0.153 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14232 19 CQKEYQKVLNQRQLLSAQLNENESVQKYC 47 (112)
Q Consensus 19 LQkeLQklv~qRQqLEaQL~ENe~VleEL 47 (112)
+=.+.|..+.+||+|+.|++..-.-..||
T Consensus 72 lftqaqsfltqrqql~nqyqqlvs~~s~l 100 (125)
T PRK15352 72 LFTQAQSFLTQRQQLENQYQQLVSRRSEL 100 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999998887665554444
No 106
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.31 E-value=4.7e+02 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 12 ELNLFKQCQKEYQKVLNQRQLLSAQL 37 (112)
Q Consensus 12 el~k~QqLQkeLQklv~qRQqLEaQL 37 (112)
...++..++++...+..+...++.+.
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 107
>smart00338 BRLZ basic region leucin zipper.
Probab=20.92 E-value=2.2e+02 Score=17.63 Aligned_cols=8 Identities=0% Similarity=0.335 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy14232 19 CQKEYQKV 26 (112)
Q Consensus 19 LQkeLQkl 26 (112)
|+.+.+.+
T Consensus 31 Le~~~~~L 38 (65)
T smart00338 31 LERKVEQL 38 (65)
T ss_pred HHHHHHHH
Confidence 33333333
No 108
>KOG0728|consensus
Probab=20.82 E-value=2.8e+02 Score=24.12 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcCCCC----cceeecc--ceeeecchhhhhh
Q psy14232 15 LFKQCQKEYQKVLNQRQLLSAQLNENE----SVQKYCNIVHLDL----GWESSRD--GLKFCTARMGRLL 74 (112)
Q Consensus 15 k~QqLQkeLQklv~qRQqLEaQL~ENe----~VleELe~L~dDa----~VYKlVG--~v~~k~~r~~~~~ 74 (112)
+++.+|.++..--..-..|++|-+|.+ ...+||..|.+-. .|-|.+| -|++|+.--|+.+
T Consensus 25 ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegKyv 94 (404)
T KOG0728|consen 25 KIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGKYV 94 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCcEE
Confidence 344455555544555567888888754 5789999997653 5677777 5788888777754
No 109
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.69 E-value=4.6e+02 Score=21.25 Aligned_cols=48 Identities=13% Similarity=-0.096 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCcceeecc
Q psy14232 13 LNLFKQCQKEYQKV-LNQRQLLSAQLNENESVQKYCNIVHLDLGWESSRD 61 (112)
Q Consensus 13 l~k~QqLQkeLQkl-v~qRQqLEaQL~ENe~VleELe~L~dDa~VYKlVG 61 (112)
.++-++|.+++..+ ......++.-..||+..++.|+.-. ...-|.+.+
T Consensus 72 ~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~-~~~~~~i~A 120 (283)
T TIGR00219 72 EYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPL-SSDEYKISA 120 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccCCceEE
Confidence 34444455555444 2222222336778988888777743 333444333
No 110
>KOG4796|consensus
Probab=20.55 E-value=4e+02 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14232 6 QKKLENELNLFKQCQKEYQKVLNQRQLLSAQLN 38 (112)
Q Consensus 6 q~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ 38 (112)
-..++.+..+|..|+..+.++-..=++|++||.
T Consensus 507 k~dF~~eY~EYreLharve~vs~rF~~Lea~L~ 539 (604)
T KOG4796|consen 507 KKDFEAEYDEYRELHARVETVSRRFRQLEAQLK 539 (604)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999999999999998
No 111
>KOG4360|consensus
Probab=20.34 E-value=4.6e+02 Score=24.38 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14232 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQKYCNI 49 (112)
Q Consensus 3 ~~Lq~kLQ~el~k~QqLQkeLQklv~qRQqLEaQL~ENe~VleELe~ 49 (112)
..++..|+...+++-..|.+..+++.+---+.-.+...-+-++|++.
T Consensus 215 ~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~ 261 (596)
T KOG4360|consen 215 RSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE 261 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777666555555555555555543
No 112
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.06 E-value=1.5e+02 Score=21.80 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=10.6
Q ss_pred cceeeccceeeecchhhhhhHhhhh
Q psy14232 55 GWESSRDGLKFCTARMGRLLDKMSA 79 (112)
Q Consensus 55 ~VYKlVG~v~~k~~r~~~~~~~~~~ 79 (112)
.+=..|..+.-....+..+|..++.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444443
Done!