RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14232
(112 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.015
Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 4 EVQ--KKLENELNLF 16
E Q KKL+ L L+
Sbjct: 18 EKQALKKLQASLKLY 32
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A
{Thermococcus SP} PDB: 2zdi_A
Length = 117
Score = 31.8 bits (72), Expect = 0.017
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQK 45
+ + +++ L + Q++ Q V+ Q+Q + +L E +
Sbjct: 2 QNIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALD 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.024
Identities = 22/131 (16%), Positives = 33/131 (25%), Gaps = 23/131 (17%)
Query: 2 VEEVQKKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENES------VQKYCNIVHLDLG 55
V V KL + KQ KE + L ENE V Y D
Sbjct: 404 VMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 56 WES--SRDGLKFC-------TARMGRLLDKMSASAFDL-FHDRQERERGSLSWYSKKSL- 104
D + + D F +++ R + +W + S+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST-AWNASGSIL 521
Query: 105 ----DFPKSKD 111
K
Sbjct: 522 NTLQQLKFYKP 532
Score = 26.7 bits (58), Expect = 1.9
Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 20/75 (26%)
Query: 5 VQKKLENE----------LNLFKQCQK----------EYQKVLNQRQLLSAQLNENESVQ 44
+++K+ ++ LN +Q + +Y++++N ++ EN
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 45 KYCNIVHLDLGWESS 59
KY +++ + L E
Sbjct: 563 KYTDLLRIALMAEDE 577
Score = 25.2 bits (54), Expect = 6.9
Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 24/123 (19%)
Query: 9 LENELNLFKQCQKEYQKVLNQRQLLSAQLNENESV-------QKYCN--IVHLDLGWESS 59
LE L Q + + + +++ ++ + Y N +V L +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAK 257
Query: 60 R-DGLKF-C----TARMGRLLDKMSASA---FDLFHDRQ---ERERGSL--SWYSKKSLD 105
+ C T R ++ D +SA+ L H E SL + + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 106 FPK 108
P+
Sbjct: 318 LPR 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.33
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 70 MGRLLDKMSASAFDLFH--DRQERERGSLSWYSKKSLDFPKSK 110
MG L K S +A D+++ D ++ S ++ P +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFS-ILDIVINNPVNL 1672
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: a.2.5.1 PDB: 1fxk_B
Length = 107
Score = 27.6 bits (61), Expect = 0.57
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 7 KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQK 45
+ ++++L F+Q Q++ Q + Q+Q + Q+NE + +
Sbjct: 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 66 CTARMGRLLDKMS 78
T RMG + D+MS
Sbjct: 469 GTVRMGAVEDEMS 481
>1zk8_A Transcriptional regulator, TETR family; TETR
member,transcriptional regulator, STRU genomics, PSI,
protein structure initiative; 2.15A {Bacillus cereus
atcc 14579} SCOP: a.4.1.9 a.121.1.1
Length = 183
Score = 25.0 bits (55), Expect = 5.3
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 73 LLDKMSASAFDLFHDRQERERGSLSW 98
+ + H+R E
Sbjct: 55 VRKNLGIYGIKKLHNRLEEAAEDKRM 80
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic RES lipoprotein, palmitate, transmemb
transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Length = 474
Score = 25.0 bits (55), Expect = 7.1
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 23 YQKVLN-QRQLLSAQLNENES-VQKYCNIVHL--DLG--WESS 59
Y +L+ QR L +AQ + + + V+L LG W
Sbjct: 411 YLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQQ 453
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 24.9 bits (55), Expect = 8.0
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 23 YQKVLN-QRQLLSAQLNENES-VQKYCNIVHL 52
Y +VL+ +R L + + + + N + L
Sbjct: 402 YLEVLDAERSLFATRQTLLDLNYARQVNEISL 433
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 24.6 bits (54), Expect = 8.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 3 EEVQKKLENELNLFKQCQKEYQKVLNQRQLL 33
E++ L+NEL + + Q +L +R+LL
Sbjct: 30 EQISMDLKNELMYQLEQDHDLQAILQERELL 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.374
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,513,920
Number of extensions: 69766
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 34
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)