RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14232
         (112 letters)



>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 107

 Score = 32.4 bits (74), Expect = 0.003
 Identities = 10/39 (25%), Positives = 24/39 (61%)

Query: 7  KKLENELNLFKQCQKEYQKVLNQRQLLSAQLNENESVQK 45
          + ++++L  F+Q Q++ Q +  Q+Q +  Q+NE +   +
Sbjct: 1  QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39


>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
          T-cell [TaxId: 9606]}
          Length = 273

 Score = 25.9 bits (56), Expect = 0.99
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 11 NELNLFKQCQKEYQKVLNQRQLLS---AQLNENESVQKYCNIVHLDLGWESSRDGLKFCT 67
           EL+  ++ Q  Y ++ N+        A+  EN +  +Y ++      ++ SR  L+   
Sbjct: 6  EELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDV----SPYDHSRVKLQNAE 61

Query: 68 ARMGRLLDKMSASAFDLFHDRQE 90
                 D ++AS  D+   ++ 
Sbjct: 62 N------DYINASLVDIEEAQRS 78


>d2dsrg1 g.28.1.1 (G:151-229) Insulin-like growth factor-binding
          protein 4, IGFBP4 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 79

 Score = 24.2 bits (52), Expect = 2.6
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 19 CQKEYQKVLNQRQLLSAQLNEN 40
          CQ E  + L +     ++ +E+
Sbjct: 3  CQSELHRALERLAASQSRTHED 24


>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
          {Escherichia coli [TaxId: 562]}
          Length = 80

 Score = 23.9 bits (52), Expect = 3.0
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 54 LGWESSRDGLKFCTARM--GRLLDKMSASAFDLFHDRQERERGSL 96
          +GW    D     T  +  GR+LD  +        +  +  +G  
Sbjct: 1  IGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDF 45


>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 456

 Score = 24.8 bits (52), Expect = 3.3
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 2   VEEVQKKLENELNLFKQCQKEYQKVLN-QRQLLSAQLNENESVQKY 46
           V+   +  +     ++     Y  +L+ QR L +AQ          
Sbjct: 390 VKASDEYYQLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQ 435


>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 172

 Score = 24.4 bits (53), Expect = 3.5
 Identities = 4/24 (16%), Positives = 9/24 (37%)

Query: 57  ESSRDGLKFCTARMGRLLDKMSAS 80
              R+ L     ++  LL ++   
Sbjct: 92  RKRRNPLSLPVEKIHPLLKEVLGY 115


>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
          erythrocytes [TaxId: 9031]}
          Length = 106

 Score = 23.6 bits (51), Expect = 5.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 58 SSRDGLKFCTARMGRLLDKMS 78
          SSR GL+F   R+ RLL K +
Sbjct: 6  SSRAGLQFPVGRVHRLLRKGN 26


>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 288

 Score = 24.0 bits (51), Expect = 5.2
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 1  MVEEVQKKLENELNLFKQCQKEYQKVLNQRQLLS---AQLNENESVQKYCNIV 50
          + EE+ +++ ++  LF++   E+  +       +   A   EN+   +Y NI+
Sbjct: 10 LEEEINRRMADDNKLFRE---EFNALPACPIQATCEAASKEENKEKNRYVNIL 59


>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
          H2A.Z [TaxId: 9606]}
          Length = 103

 Score = 23.3 bits (50), Expect = 5.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 58 SSRDGLKFCTARMGRLL 74
          S R GL+F   R+ R L
Sbjct: 5  SQRAGLQFPVGRIHRHL 21


>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 23.6 bits (51), Expect = 5.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 58 SSRDGLKFCTARMGRLLDKMSAS 80
          S++ G+ F   RM R + K    
Sbjct: 5  SAKAGVIFPVGRMLRYIKKGHPK 27


>d1z1za1 d.323.1.1 (A:2-130) Minor tail protein gpU {Bacteriophage
           lambda [TaxId: 10710]}
          Length = 129

 Score = 22.8 bits (49), Expect = 9.1
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 19  CQKEYQKVLNQRQLLSAQLNENESVQKYCNIVHLDLGWESS-RDGLKFCTARMGRLLDKM 77
               +Q  L+    L AQ+ ++E          LD   ES     +    A +  L+  M
Sbjct: 53  DSDTWQAELHIEVFLPAQVPDSE----------LDAWMESRIYPVMSDIPA-LSDLITSM 101

Query: 78  SASAFDLFHDRQERERGS 95
            AS +D   D       S
Sbjct: 102 VASGYDYRRDDDAGLWSS 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,568
Number of extensions: 13915
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 15
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)