BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14233
(122 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|307197483|gb|EFN78717.1| Dosage compensation regulator [Harpegnathos saltator]
Length = 1243
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 74/96 (77%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+F ++WC KN+K+P+FDVR GPKHRQRFLCELRI+G YVGAGNSTNKKDAQ NA
Sbjct: 2 GDIKSFFHQWCGKNAKEPQFDVRPTGPKHRQRFLCELRISGFDYVGAGNSTNKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVTVN 100
AKD+V YLVR+G+VN DVP E + T VN
Sbjct: 62 AKDYVNYLVRTGRVNPNDVPREALTTQATSNDGIVN 97
>gi|307176984|gb|EFN66290.1| Dosage compensation regulator [Camponotus floridanus]
Length = 1243
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 70/86 (81%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+F ++WC KN K+P+FDVR GPKHRQRFLCELR+ G YVGAGNSTNKKDAQ NA
Sbjct: 2 GDIKSFFHQWCAKNGKEPQFDVRPTGPKHRQRFLCELRVPGFDYVGAGNSTNKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPM 90
AKD+V YLVR+ +VN DVP ENI +
Sbjct: 62 AKDYVNYLVRTNRVNSNDVPRENITL 87
>gi|332030651|gb|EGI70339.1| Dosage compensation regulator [Acromyrmex echinatior]
Length = 1202
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+F ++WC KN K+P+FDVR GPKHRQRFLCELRI G YVGAGNSTNKKDAQ NA
Sbjct: 2 GDIKSFFHQWCAKNGKEPQFDVRPTGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVE-NIP-MTPTGPSVTVNTSKRFSF 107
A+D+V YLVR+ +VN DVP + IP MTP + V+T + F
Sbjct: 62 ARDYVNYLVRTNRVNPNDVPKDAGIPTMTPDAIKIEVSTPIKSVF 106
>gi|350402053|ref|XP_003486351.1| PREDICTED: dosage compensation regulator-like [Bombus impatiens]
Length = 1234
Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 71/93 (76%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+F ++WC KN K+P+FDVR GPKHRQRFLCELR+ G YVGAGNST+KKDAQ NA
Sbjct: 2 GDIKSFFHQWCAKNCKEPQFDVRPTGPKHRQRFLCELRVPGFDYVGAGNSTSKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSV 97
AKD+V YLVRSG VN DVP + + G ++
Sbjct: 62 AKDYVNYLVRSGHVNADDVPKDTQSILQQGTTI 94
>gi|328785633|ref|XP_003250627.1| PREDICTED: dosage compensation regulator isoform 1 [Apis
mellifera]
Length = 1232
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 66/80 (82%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+F ++WC KNSK+P+FDVR GPKHR RFLCELR+ G YVGAGNSTNKKDAQ NA
Sbjct: 2 GDIKSFFHQWCTKNSKEPQFDVRQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A+D+V YLVR+G VN DVP
Sbjct: 62 ARDYVNYLVRTGHVNPNDVP 81
>gi|380020062|ref|XP_003693917.1| PREDICTED: LOW QUALITY PROTEIN: dosage compensation
regulator-like [Apis florea]
Length = 1239
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 66/80 (82%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+F ++WC KNSK+P+FDVR GPKHR RFLCELR+ G YVGAGNSTNKKDAQ NA
Sbjct: 2 GDIKSFFHQWCTKNSKEPQFDVRQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A+D+V YLVR+G VN DVP
Sbjct: 62 ARDYVNYLVRTGHVNPNDVP 81
>gi|66510919|ref|XP_396525.2| PREDICTED: dosage compensation regulator isoform 2 [Apis
mellifera]
Length = 1239
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 66/80 (82%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+F ++WC KNSK+P+FDVR GPKHR RFLCELR+ G YVGAGNSTNKKDAQ NA
Sbjct: 2 GDIKSFFHQWCTKNSKEPQFDVRQTGPKHRHRFLCELRVPGFDYVGAGNSTNKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A+D+V YLVR+G VN DVP
Sbjct: 62 ARDYVNYLVRTGHVNPNDVP 81
>gi|383854376|ref|XP_003702697.1| PREDICTED: dosage compensation regulator-like [Megachile
rotundata]
Length = 1244
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 72/97 (74%), Gaps = 2/97 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+FL++WC KN K+P+FDVR G KHRQRFLCELRI G YVGAGNSTNKKDAQ NA
Sbjct: 2 GDIKSFLHQWCAKNGKEPQFDVRPTGLKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVP--VENIPMTPTGPSVTV 99
A+D+V YLVR+G VN DVP + NI P + V
Sbjct: 62 ARDYVNYLVRTGHVNSNDVPRDMNNIQPQNVAPMIKV 98
>gi|340714916|ref|XP_003395968.1| PREDICTED: dosage compensation regulator-like [Bombus terrestris]
Length = 1236
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 65/80 (81%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K+F ++WC KN K+P+FD+R GPKHRQRFLCELR+ G YVGAGNST+KKDAQ NA
Sbjct: 2 GDIKSFFHQWCAKNCKEPQFDIRPTGPKHRQRFLCELRVPGFDYVGAGNSTSKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVP 84
AKD+V YLVRS VN DVP
Sbjct: 62 AKDYVNYLVRSRHVNADDVP 81
>gi|345488712|ref|XP_001604965.2| PREDICTED: dosage compensation regulator-like isoform 1 [Nasonia
vitripennis]
Length = 1259
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 66/82 (80%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +KAFL++WC KNS +P F+VR GPKHRQRFLCELR+ G YV GNSTNKKDAQ NA
Sbjct: 2 GDIKAFLHQWCAKNSTEPSFEVRPTGPKHRQRFLCELRVNGYDYVAVGNSTNKKDAQGNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVE 86
++DFV YLVR G+VN +DVP +
Sbjct: 62 SRDFVNYLVRIGKVNAKDVPAD 83
>gi|91078338|ref|XP_973454.1| PREDICTED: similar to maleless protein [Tribolium castaneum]
Length = 1220
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 71/91 (78%), Gaps = 3/91 (3%)
Query: 7 VKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
+K+FL+++CQK K QP+F+VR GPKHRQRFLCE+RI G YVGAGNSTNKKDAQ+NAA
Sbjct: 4 IKSFLHQFCQKTKKEQPQFEVRPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSNAA 63
Query: 66 KDFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
+DFV YLVR G VN DVP + P GP+
Sbjct: 64 RDFVSYLVREGIVNPADVP--DFQDAPPGPN 92
>gi|270003897|gb|EFA00345.1| hypothetical protein TcasGA2_TC003184 [Tribolium castaneum]
Length = 1222
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 71/91 (78%), Gaps = 3/91 (3%)
Query: 7 VKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
+K+FL+++CQK K QP+F+VR GPKHRQRFLCE+RI G YVGAGNSTNKKDAQ+NAA
Sbjct: 4 IKSFLHQFCQKTKKEQPQFEVRPTGPKHRQRFLCEVRIDGYSYVGAGNSTNKKDAQSNAA 63
Query: 66 KDFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
+DFV YLVR G VN DVP + P GP+
Sbjct: 64 RDFVSYLVREGIVNPADVP--DFQDAPPGPN 92
>gi|241600828|ref|XP_002405209.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215502478|gb|EEC11972.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 1095
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 70/92 (76%), Gaps = 5/92 (5%)
Query: 3 GDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GD L K FL WC KN P+++ + GP+HRQRFLCE+R+ G YVGAGNSTNKKDAQT
Sbjct: 2 GD-LTKTFLYAWCGKNKVTPQYEFKNTGPRHRQRFLCEVRVEGYDYVGAGNSTNKKDAQT 60
Query: 63 NAAKDFVQYLVRSGQVNERDVPVENIPMTPTG 94
NAA+DF+QYLVR+G +++ +VPVE PTG
Sbjct: 61 NAARDFLQYLVRNGLISQGEVPVE----IPTG 88
>gi|427777633|gb|JAA54268.1| Putative deah-box rna helicase [Rhipicephalus pulchellus]
Length = 1270
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/99 (57%), Positives = 73/99 (73%), Gaps = 4/99 (4%)
Query: 3 GDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GD L K FL WC K+ PE++ + GP+HRQRFLCE+R+ G YVGAGNSTNKKDAQT
Sbjct: 2 GD-LTKTFLYAWCGKHKVTPEYEFKNTGPRHRQRFLCEVRVQGFDYVGAGNSTNKKDAQT 60
Query: 63 NAAKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVTVNT 101
NAA+DF+QYLVRS +++ +VP+E IP GP + N+
Sbjct: 61 NAARDFLQYLVRSNHISQSEVPIE-IP--SGGPPASTNS 96
>gi|153792023|ref|NP_001093309.1| MLE protein [Bombyx mori]
gi|147883246|gb|ABQ51917.1| MLE protein [Bombyx mori]
Length = 1308
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 61/78 (78%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL WC K P FD+RA GPKHRQRFLCE+R+ G Y+GAGNST KKDAQ NAAK
Sbjct: 3 IKSFLYTWCAKKGLTPLFDIRATGPKHRQRFLCEVRVEGFSYLGAGNSTTKKDAQMNAAK 62
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR+GQ+ + DVP
Sbjct: 63 DFVSYLVRAGQIPQADVP 80
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
K+ L+++ Q N ++ +A GP H + F CEL I G G ++NK+ A +
Sbjct: 167 KSKLHQFLQMNKINADYVYKAVGPDHTRSFACELTIYVSQLGRNVTGRETASNKQTASKS 226
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 227 CALSIVRQLYHLGVI 241
>gi|158296133|ref|XP_316626.4| AGAP006599-PA [Anopheles gambiae str. PEST]
gi|157016367|gb|EAA11305.4| AGAP006599-PA [Anopheles gambiae str. PEST]
Length = 1309
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL WCQKN +P FDVR GPKHRQRFLCE+RI GI Y+G GNSTNKKD++ NA++
Sbjct: 3 MKSFLLCWCQKNVCEPAFDVRPLGPKHRQRFLCEVRIPGINYIGVGNSTNKKDSEKNASR 62
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTPTG 94
DFV YLVR G+V E VP + P P G
Sbjct: 63 DFVNYLVRIGKVPEGSVPQD--PSAPAG 88
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYV--------GAGNSTNKKD 59
K+ LN+W Q + + EF + GP H + F+ E+ I YV G + +NK+
Sbjct: 163 KSKLNQWLQHHKIKAEFKYTSIGPDHAKSFIAEM----IVYVRELNRTITGRESGSNKQS 218
Query: 60 AQTNAAKDFVQYLVRSGQV 78
A + A ++ L G +
Sbjct: 219 ASKSCALSLIRQLYHLGVI 237
>gi|157107677|ref|XP_001649886.1| ATP-dependent RNA helicase [Aedes aegypti]
gi|108879498|gb|EAT43723.1| AAEL004859-PA, partial [Aedes aegypti]
Length = 1131
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 63/81 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+F EWCQK S P F+VR GPK+RQRFLCE+R+ YVGAGNSTNKKDA+ NAA+
Sbjct: 3 IKSFFYEWCQKGSFTPSFEVRPTGPKNRQRFLCEVRVPSEAYVGAGNSTNKKDAERNAAR 62
Query: 67 DFVQYLVRSGQVNERDVPVEN 87
DFV YLVR+G+V DVP E+
Sbjct: 63 DFVNYLVRTGKVASSDVPSES 83
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN+W Q N P++ A GP H + F+ E+ I G + +NK+ A +
Sbjct: 172 KAKLNQWLQMNRMNPDYKYTAVGPDHARSFMAEMTIYVKQLSRNITGRESGSNKQSASKS 231
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 232 CALSLVRQLFHLGVI 246
>gi|195430156|ref|XP_002063122.1| GK21754 [Drosophila willistoni]
gi|194159207|gb|EDW74108.1| GK21754 [Drosophila willistoni]
Length = 1401
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL E+C KN +P+F+VR GPKHRQRFLCE+R+ YV GNSTNKKDA+ NA++
Sbjct: 3 IKSFLFEYCSKNHTEPKFEVRPTGPKHRQRFLCEVRVEKCSYVAVGNSTNKKDAEKNASR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP E
Sbjct: 63 DFVNYLVRMGKLNAEDVPAE 82
>gi|3650397|emb|CAA77038.1| maleless protein [Sciara ocellaris]
Length = 1252
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 63/82 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+F + WC K +P+F+ R GPKHRQRFLCELR+AG YVGAGNST KKDA+ NAA+
Sbjct: 4 IKSFFHSWCNKTKVEPQFESRPTGPKHRQRFLCELRVAGFNYVGAGNSTVKKDAEKNAAR 63
Query: 67 DFVQYLVRSGQVNERDVPVENI 88
DFV +LVR+G VN +VP + I
Sbjct: 64 DFVNFLVRNGNVNAGEVPGDAI 85
>gi|260828967|ref|XP_002609434.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae]
gi|229294790|gb|EEN65444.1| hypothetical protein BRAFLDRAFT_124637 [Branchiostoma floridae]
Length = 1237
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 64/86 (74%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P +D RAAG K RQRF+CE+R+ G YVGAGNST+KKDAQTNAA+
Sbjct: 4 LKNFLYAWCGKKKITPNYDFRAAGSKQRQRFVCEVRVPGYDYVGAGNSTSKKDAQTNAAR 63
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTP 92
DFV +LVR+G+V++ +VP +P P
Sbjct: 64 DFVMFLVRTGEVSQAEVPAIEVPTMP 89
>gi|195119908|ref|XP_002004471.1| GI19596 [Drosophila mojavensis]
gi|193909539|gb|EDW08406.1| GI19596 [Drosophila mojavensis]
Length = 1351
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 67/91 (73%), Gaps = 5/91 (5%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL +C KN +P+F+VR GPKHRQRFLCE+R+ YV GNSTNKKDA+ NA++
Sbjct: 3 IKSFLFSYCAKNQTEPKFEVRPIGPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEKNASR 62
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTPTGPSV 97
DFV YLVR G++N +DVP + PT P+V
Sbjct: 63 DFVNYLVRVGKLNAKDVPND-----PTAPAV 88
>gi|312377844|gb|EFR24577.1| hypothetical protein AND_10726 [Anopheles darlingi]
Length = 199
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+F WCQKN +P F+VR GPKHRQRFLCE+R+ G Y G GNSTNKKD++ NAA+
Sbjct: 4 MKSFFMIWCQKNVVEPSFEVRPTGPKHRQRFLCEVRLPGYNYTGVGNSTNKKDSEKNAAR 63
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
DFV YLVR G++ E +P P GP+
Sbjct: 64 DFVHYLVRIGKIAEESLPA-GCGTLPAGPT 92
>gi|410930790|ref|XP_003978781.1| PREDICTED: uncharacterized protein LOC101078888, partial
[Takifugu rubripes]
Length = 399
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 63/79 (79%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
VK FL WC K P +D+RAAG K+RQ+FLCE++++G Y+G GNSTNKKDAQTNAA+
Sbjct: 4 VKNFLYAWCGKKKLTPNYDIRAAGNKNRQKFLCEVQVSGYSYIGMGNSTNKKDAQTNAAR 63
Query: 67 DFVQYLVRSGQVNERDVPV 85
DFV +LVR+G++N DVP+
Sbjct: 64 DFVNFLVRTGEMNATDVPL 82
>gi|195027549|ref|XP_001986645.1| GH20409 [Drosophila grimshawi]
gi|193902645|gb|EDW01512.1| GH20409 [Drosophila grimshawi]
Length = 1335
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 62/78 (79%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL +C KN +P+F+VR GPKHRQRFLCE+R+ YV GNSTNKKDA+ NA++
Sbjct: 3 IKSFLFSYCAKNQTEPKFEVRPTGPKHRQRFLCEVRVDLCSYVAVGNSTNKKDAEKNASR 62
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR+G++N +DVP
Sbjct: 63 DFVNYLVRAGKLNVKDVP 80
>gi|357607145|gb|EHJ65367.1| MLE protein [Danaus plexippus]
Length = 189
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 61/77 (79%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K++L W K S P FD+RA GPKHRQRFLCE+R+ G YVGAGNS KK+AQ NA++D
Sbjct: 4 KSYLFSWAAKKSLIPTFDIRATGPKHRQRFLCEVRVEGHTYVGAGNSVTKKEAQKNASRD 63
Query: 68 FVQYLVRSGQVNERDVP 84
F+ YL+RSG+++++DVP
Sbjct: 64 FINYLIRSGEISQQDVP 80
>gi|159163361|pdb|1WHQ|A Chain A, Solution Structure Of The N-Terminal Dsrbd From
Hypothetical Protein Bab28848
gi|380258788|pdb|2RS6|A Chain A, Solution Structure Of The N-Terminal Dsrbd From Rna
Helicase A
Length = 99
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 64/95 (67%)
Query: 2 SGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
SG +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ
Sbjct: 3 SGSSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQ 62
Query: 62 TNAAKDFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
+NAA+DFV YLVR +V +VP I P+GPS
Sbjct: 63 SNAARDFVNYLVRINEVKSEEVPAVGIVPPPSGPS 97
>gi|348543015|ref|XP_003458979.1| PREDICTED: ATP-dependent RNA helicase A-like protein-like
[Oreochromis niloticus]
Length = 1288
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 60/78 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P +D+RAAG K+RQ+F+CE+R+ G Y+G GNSTNKKDAQTNAA+
Sbjct: 4 IKNFLYAWCGKKKLTPNYDIRAAGNKNRQKFMCEVRVDGFNYIGMGNSTNKKDAQTNAAR 63
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR G++N +VP
Sbjct: 64 DFVNYLVRIGEMNAAEVP 81
>gi|443688667|gb|ELT91287.1| hypothetical protein CAPTEDRAFT_220258 [Capitella teleta]
Length = 1221
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 60/85 (70%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +KAFL WC K P +DVR+ G K+R RFLCE+R+ G YVGAGNSTNKKDAQTNA
Sbjct: 2 GDIKAFLYAWCGKQKITPNYDVRSGGNKNRPRFLCEVRVEGHAYVGAGNSTNKKDAQTNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIP 89
A DF+QYL+R+ + DVP P
Sbjct: 62 ANDFIQYLIRTNIMKASDVPQSATP 86
>gi|195401473|ref|XP_002059337.1| GJ18398 [Drosophila virilis]
gi|194142343|gb|EDW58749.1| GJ18398 [Drosophila virilis]
Length = 1362
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL +C KN +P+F+VR GPKHRQRFLCE+R+ YV GNSTNKKDA+ NA++
Sbjct: 3 IKSFLFSYCAKNQTEPKFEVRPTGPKHRQRFLCEVRVDQCPYVAVGNSTNKKDAEKNASR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
D+V YLVR G++N +DVP +
Sbjct: 63 DYVNYLVRVGKLNAKDVPAD 82
>gi|195475660|ref|XP_002090102.1| GE19435 [Drosophila yakuba]
gi|194176203|gb|EDW89814.1| GE19435 [Drosophila yakuba]
Length = 1283
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 64/80 (80%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL E+C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYEFCAKSRVEPKFDIRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N++DVP +
Sbjct: 63 DFVNYLVRVGKLNDKDVPAD 82
>gi|194864148|ref|XP_001970794.1| GG10841 [Drosophila erecta]
gi|190662661|gb|EDV59853.1| GG10841 [Drosophila erecta]
Length = 1304
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL E+C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYEFCAKSRIEPKFDIRQTGPKNRQRFLCEVRVDPNIYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTPTGPSVTVN 100
DFV YLVR G++N +DVP + + + GP + ++
Sbjct: 63 DFVNYLVRVGKLNAKDVPADAVA-SGAGPRIGLD 95
>gi|242025160|ref|XP_002432994.1| ATP-dependent RNA helicase A, putative [Pediculus humanus
corporis]
gi|212518503|gb|EEB20256.1| ATP-dependent RNA helicase A, putative [Pediculus humanus
corporis]
Length = 1249
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 63/82 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K++ + WC K+ + P FDVRAAG K+RQRF+CEL++ G Y+G GNSTNKKDAQ NAA+
Sbjct: 3 IKSYFHAWCIKSGRTPTFDVRAAGLKNRQRFICELKVDGYSYIGCGNSTNKKDAQFNAAR 62
Query: 67 DFVQYLVRSGQVNERDVPVENI 88
DFV YLVR ++ ++P ++I
Sbjct: 63 DFVHYLVRQNVIDGSEIPQDSI 84
>gi|327277433|ref|XP_003223469.1| PREDICTED: ATP-dependent RNA helicase A-like [Anolis
carolinensis]
Length = 1253
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 61/88 (69%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
VK FL WC K P +++RA G K RQ+F+CE+R+AG Y+G GNSTNKKDAQTNAA+
Sbjct: 4 VKNFLYAWCGKRKLTPAYEIRAVGNKTRQKFMCEVRVAGFNYIGMGNSTNKKDAQTNAAR 63
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTPTG 94
DF+ YLVR ++ ++P + +T G
Sbjct: 64 DFLNYLVRVNEIKSEEIPALGVSLTEAG 91
>gi|194758212|ref|XP_001961356.1| GF13828 [Drosophila ananassae]
gi|190622654|gb|EDV38178.1| GF13828 [Drosophila ananassae]
Length = 1339
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL E+C K+ +P+ DVR GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYEYCSKSRIEPKLDVRQTGPKNRQRFLCEVRVDQNNYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR G++N DVP
Sbjct: 63 DFVNYLVRVGKLNANDVP 80
>gi|157382858|gb|ABV48864.1| maleless [Drosophila melanogaster]
Length = 1286
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382866|gb|ABV48868.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382860|gb|ABV48865.1| maleless [Drosophila melanogaster]
gi|157382864|gb|ABV48867.1| maleless [Drosophila melanogaster]
gi|157382878|gb|ABV48874.1| maleless [Drosophila melanogaster]
gi|384875315|gb|AFI26242.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|17136342|ref|NP_476641.1| maleless, isoform A [Drosophila melanogaster]
gi|76803804|sp|P24785.2|MLE_DROME RecName: Full=Dosage compensation regulator; AltName:
Full=ATP-dependent RNA helicase mle; AltName:
Full=Protein male-less; AltName: Full=Protein maleless;
AltName: Full=Protein no action potential
gi|7302201|gb|AAF57297.1| maleless, isoform A [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382868|gb|ABV48869.1| maleless [Drosophila melanogaster]
gi|157382870|gb|ABV48870.1| maleless [Drosophila melanogaster]
gi|157382876|gb|ABV48873.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382862|gb|ABV48866.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157906|gb|AAC41573.1| maleless protein [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382872|gb|ABV48871.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382852|gb|ABV48861.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382880|gb|ABV48875.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382874|gb|ABV48872.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157382856|gb|ABV48863.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157824888|gb|ABV82523.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|432913230|ref|XP_004078970.1| PREDICTED: ATP-dependent RNA helicase A-like [Oryzias latipes]
Length = 1224
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 64/93 (68%), Gaps = 4/93 (4%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P +++RAAG K+RQ+F+CE+R+ G YVG GNST+KKDAQTNAA+
Sbjct: 4 IKNFLYAWCGKKKLTPNYEIRAAGNKNRQKFMCEVRVDGFTYVGMGNSTSKKDAQTNAAR 63
Query: 67 DFVQYLVRSGQVNERDVP----VENIPMTPTGP 95
DFV YLVR G++ +VP V P P GP
Sbjct: 64 DFVNYLVRVGEMKAEEVPALGAVAPEPNQPEGP 96
>gi|157382854|gb|ABV48862.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157824876|gb|ABV82517.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157824886|gb|ABV82522.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157824878|gb|ABV82518.1| maleless [Drosophila melanogaster]
gi|157824880|gb|ABV82519.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157824892|gb|ABV82525.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157824882|gb|ABV82520.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157824890|gb|ABV82524.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|157824884|gb|ABV82521.1| maleless [Drosophila melanogaster]
Length = 1293
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|319803056|ref|NP_001188373.1| ATP-dependent RNA helicase A [Danio rerio]
Length = 1270
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P +D+RAAG K+RQ+F+CE+R+ Y+G GNSTNKKDAQ+NAA+
Sbjct: 4 IKNFLYAWCGKKKLTPNYDIRAAGNKNRQKFMCEVRVESYSYIGMGNSTNKKDAQSNAAR 63
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
DFV YLVR+ +++ +VP + + P GPS
Sbjct: 64 DFVNYLVRTKEISPGEVPALGVSV-PDGPS 92
>gi|344278461|ref|XP_003411012.1| PREDICTED: ATP-dependent RNA helicase A-like [Loxodonta africana]
Length = 1286
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKKKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVT 98
A+DFV YLVR +V +VP + + P PS+T
Sbjct: 62 ARDFVNYLVRINEVKSEEVPA--VGLAPPPPSLT 93
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 183 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 242
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 243 CALSLVRQLYHLGVI 257
>gi|417414426|gb|JAA53507.1| Putative deah-box rna helicase, partial [Desmodus rotundus]
Length = 1204
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 65/101 (64%), Gaps = 4/101 (3%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y+G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPTYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI--PMTPT--GPSVTVNT 101
A+DFV YLVR +V +VP + PM P P NT
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGVAPPMPPLTDTPDAAANT 102
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 183 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 242
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 243 CALSLVRQLYHLGVI 257
>gi|148226408|ref|NP_001087383.1| ATP-dependent RNA helicase A-like protein [Xenopus laevis]
gi|71153340|sp|Q68FK8.1|DHX9_XENLA RecName: Full=ATP-dependent RNA helicase A-like protein; AltName:
Full=DEAH box protein 9; AltName: Full=Nuclear DNA
helicase II; Short=NDH II
gi|51262114|gb|AAH79701.1| MGC81010 protein [Xenopus laevis]
Length = 1262
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 59/78 (75%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P +++RAAG K+RQ+F+CE+RI G Y+G GNSTNKKDAQTN+A+
Sbjct: 4 IKNFLYAWCGKKKLTPNYEIRAAGNKNRQKFMCEVRIDGFNYIGMGNSTNKKDAQTNSAR 63
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR G++ +VP
Sbjct: 64 DFVNYLVRVGEMRSDEVP 81
>gi|350589099|ref|XP_003130412.3| PREDICTED: ATP-dependent RNA helicase A-like [Sus scrofa]
Length = 841
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 60/88 (68%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTP 92
A+DFV YLVR +V +VP + TP
Sbjct: 62 ARDFVNYLVRINEVKSEEVPTMGVAPTP 89
>gi|384875316|gb|AFI26243.1| maleless [Drosophila melanogaster]
Length = 226
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>gi|335306989|ref|XP_003130411.2| PREDICTED: ATP-dependent RNA helicase A-like [Sus scrofa]
Length = 1286
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 60/88 (68%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTP 92
A+DFV YLVR +V +VP + TP
Sbjct: 62 ARDFVNYLVRINEVKSEEVPTMGVAPTP 89
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 178 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 237
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 238 CALSLVRQLYHLGVI 252
>gi|296478925|tpg|DAA21040.1| TPA: ATP-dependent RNA helicase A [Bos taurus]
gi|440892736|gb|ELR45806.1| ATP-dependent RNA helicase A [Bos grunniens mutus]
Length = 1287
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVT 98
A+DFV YLVR ++ +VP I + P PS T
Sbjct: 62 ARDFVNYLVRINELKSEEVPA--IGVAPPTPSAT 93
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 179 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQIGRRIFAREHGSNKKLAAQS 238
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 239 CALSLVRQLYHLGVI 253
>gi|126306309|ref|XP_001366536.1| PREDICTED: ATP-dependent RNA helicase A [Monodelphis domestica]
Length = 1256
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPTYEIRAVGNKNRQKFMCEVRVEGFNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI--PMTPTGPS 96
A+DFV YLVR +V +VP I P+T T S
Sbjct: 62 ARDFVNYLVRVNEVKSEEVPAIGIAPPVTDTSDS 95
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 184 KARLNQFFQKEKVQGEYKYTQVGPDHNRSFIAEMTIYVKQLGRRIFAREHGSNKKLAAQS 243
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 244 CALSLVRQLYHLGVV 258
>gi|195580870|ref|XP_002080257.1| GD10344 [Drosophila simulans]
gi|194192266|gb|EDX05842.1| GD10344 [Drosophila simulans]
Length = 1298
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|157382892|gb|ABV48881.1| maleless [Drosophila simulans]
Length = 1298
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|157382882|gb|ABV48876.1| maleless [Drosophila simulans]
Length = 1298
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|157382884|gb|ABV48877.1| maleless [Drosophila simulans]
Length = 1298
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|157382890|gb|ABV48880.1| maleless [Drosophila simulans]
Length = 1298
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|157382886|gb|ABV48878.1| maleless [Drosophila simulans]
Length = 1298
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|291415218|ref|XP_002723851.1| PREDICTED: ATP-dependent RNA helicase A [Oryctolagus cuniculus]
Length = 1260
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKDFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVT 98
A+DFV YLVR +V +VP I + P P +T
Sbjct: 62 ARDFVNYLVRINEVKSEEVPA--IGIAPPLPPLT 93
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|157382894|gb|ABV48882.1| maleless [Drosophila simulans]
Length = 1298
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|157382888|gb|ABV48879.1| maleless [Drosophila simulans]
Length = 1298
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|195155374|ref|XP_002018580.1| GL17788 [Drosophila persimilis]
gi|194114376|gb|EDW36419.1| GL17788 [Drosophila persimilis]
Length = 1318
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K +P+ +VR GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLFQFCAKTRTEPKLEVRQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR+G++N DVP
Sbjct: 63 DFVNYLVRTGKLNATDVP 80
>gi|195353782|ref|XP_002043382.1| GM16493 [Drosophila sechellia]
gi|194127505|gb|EDW49548.1| GM16493 [Drosophila sechellia]
Length = 1298
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 61/80 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+ D+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKLDIRQTGPKNRQRFLCEVRVQPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNANDVPAD 82
>gi|198459278|ref|XP_001361331.2| GA11141 [Drosophila pseudoobscura pseudoobscura]
gi|198136635|gb|EAL25909.2| GA11141 [Drosophila pseudoobscura pseudoobscura]
Length = 1318
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K +P+ +VR GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLFQFCAKTRTEPKLEVRQTGPKNRQRFLCEVRVEQTPYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR+G++N DVP
Sbjct: 63 DFVNYLVRTGKLNATDVP 80
>gi|395530934|ref|XP_003767541.1| PREDICTED: ATP-dependent RNA helicase A [Sarcophilus harrisii]
Length = 1260
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPTYEIRAVGNKNRQKFMCEVRVEGFNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI--PMTPTGPS 96
A+DFV YLVR +V +VP I P+T T S
Sbjct: 62 ARDFVNYLVRVNEVKSEEVPAIGIAPPVTDTTDS 95
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 185 KARLNQFFQKEKVQGEYKYTQVGPDHNRSFIAEMTIYVKQLGRRIFAREHGSNKKLAAQS 244
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 245 CALSLVRQLYHLGVV 259
>gi|27806665|ref|NP_776461.1| ATP-dependent RNA helicase A [Bos taurus]
gi|2500541|sp|Q28141.1|DHX9_BOVIN RecName: Full=ATP-dependent RNA helicase A; Short=RHA; AltName:
Full=DEAH box protein 9; AltName: Full=Nuclear DNA
helicase II; Short=NDH II
gi|577739|emb|CAA58036.1| nuclear DNA helicase II [Bos taurus]
Length = 1287
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVT 98
A+DFV YLVR ++ +VP + + P PS T
Sbjct: 62 ARDFVNYLVRINELKSEEVPA--VGVAPPTPSAT 93
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 179 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQIGRRIFAREHGSNKKLAAQS 238
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 239 CALSLVRQLYHLGVI 253
>gi|73960445|ref|XP_537154.2| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Canis lupus
familiaris]
Length = 1276
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 58/80 (72%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y+G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A+DFV YLVR +V +VP
Sbjct: 62 ARDFVNYLVRINEVKSEEVP 81
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 183 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 242
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 243 CALSLVRQLYHLGVI 257
>gi|354481448|ref|XP_003502913.1| PREDICTED: ATP-dependent RNA helicase A [Cricetulus griseus]
Length = 1311
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 2/94 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVT 98
A+DFV YLVR +V +VP I P P +T
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI--VPPPPILT 93
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 185 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 244
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 245 CALSLVRQLYHLGVI 259
>gi|322801001|gb|EFZ21782.1| hypothetical protein SINV_04122 [Solenopsis invicta]
Length = 184
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 29 AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERDVPVENI 88
GPKHRQRFLCELRI G YVGAGNSTNKKDAQ NAAKD+V YLVR+ VN DVP ++
Sbjct: 9 TGPKHRQRFLCELRIPGFDYVGAGNSTNKKDAQGNAAKDYVNYLVRTNHVNPNDVP-KDF 67
Query: 89 PMTPTGPSVTVNT 101
PM PT + ++ T
Sbjct: 68 PMMPTMATDSIKT 80
>gi|90077408|dbj|BAE88384.1| unnamed protein product [Macaca fascicularis]
Length = 437
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQT 62
KA LN++ QK Q E+ GP H + F+ E+ I G G+ +NKK A
Sbjct: 181 AKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARGHGSNKKLAAQ 240
Query: 63 NAAKDFVQYLVRSGQV 78
+ A V+ L G V
Sbjct: 241 SCALSLVRQLYHLGVV 256
>gi|12850774|dbj|BAB28848.1| unnamed protein product [Mus musculus]
Length = 265
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTP 92
A+DFV YLVR +V +VP I P
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGIVPPP 89
>gi|157821633|ref|NP_001100654.1| ATP-dependent RNA helicase A [Rattus norvegicus]
gi|149058390|gb|EDM09547.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 (predicted) [Rattus
norvegicus]
Length = 1174
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 185 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 244
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 245 CALSLVRQLYHLGVI 259
>gi|148707490|gb|EDL39437.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Mus
musculus]
Length = 1384
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 3 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 62
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 63 ARDFVNYLVRINEVKSEEVPAVGI 86
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 185 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 244
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 245 CALSLVRQLYHLGVI 259
>gi|148707489|gb|EDL39436.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Mus
musculus]
Length = 1174
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 185 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 244
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 245 CALSLVRQLYHLGVI 259
>gi|345325475|ref|XP_001515991.2| PREDICTED: ATP-dependent RNA helicase A [Ornithorhynchus
anatinus]
Length = 1332
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKVTPTYEIRAVGNKNRQKFMCEVRVEGFNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI--PMTPT 93
A+DFV YLVR +V +VP + P T T
Sbjct: 62 ARDFVNYLVRVNEVKSEEVPAMGVAPPTTET 92
>gi|218675756|gb|AAI69284.2| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [synthetic construct]
Length = 413
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 184 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 243
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 244 CALSLVRQLYHLGVI 258
>gi|150456419|ref|NP_031868.2| ATP-dependent RNA helicase A [Mus musculus]
Length = 1383
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 184 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 243
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 244 CALSLVRQLYHLGVI 258
>gi|74202542|dbj|BAE24846.1| unnamed protein product [Mus musculus]
Length = 735
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 185 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 244
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 245 CALSLVRQLYHLGVI 259
>gi|71153505|sp|O70133.2|DHX9_MOUSE RecName: Full=ATP-dependent RNA helicase A; Short=RHA; AltName:
Full=DEAH box protein 9; Short=mHEL-5; AltName:
Full=Nuclear DNA helicase II; Short=NDH II
Length = 1380
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 184 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 243
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 244 CALSLVRQLYHLGVI 258
>gi|426240004|ref|XP_004013905.1| PREDICTED: ATP-dependent RNA helicase A [Ovis aries]
Length = 1287
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
A+DFV YLVR ++ +VP I + P PS
Sbjct: 62 ARDFVNYLVRINELKSEEVPA--IGVAPPPPS 91
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 179 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQIGRRIFAREHGSNKKLAAQS 238
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 239 CALSLVRQLYHLGVI 253
>gi|58047678|gb|AAH89159.1| Dhx9 protein [Mus musculus]
Length = 459
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTP 92
A+DFV YLVR +V +VP I P
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGIVPPP 89
>gi|2688940|gb|AAC05301.1| RNA helicase A [Mus musculus]
Length = 161
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
>gi|62020087|gb|AAH08773.1| DHX9 protein, partial [Homo sapiens]
Length = 596
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|116283708|gb|AAH25245.1| DHX9 protein [Homo sapiens]
Length = 593
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|33878473|gb|AAH14246.1| DHX9 protein, partial [Homo sapiens]
Length = 599
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|380810168|gb|AFE76959.1| ATP-dependent RNA helicase A [Macaca mulatta]
Length = 1166
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|116283679|gb|AAH33911.1| Dhx9 protein [Mus musculus]
Length = 198
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTP 92
A+DFV YLVR +V +VP I P
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGIVPPP 89
>gi|1806048|emb|CAA71668.1| nuclear DNA helicase II [Homo sapiens]
Length = 1270
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|426332974|ref|XP_004028065.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Gorilla gorilla
gorilla]
Length = 1270
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|297662534|ref|XP_002809755.1| PREDICTED: ATP-dependent RNA helicase A [Pongo abelii]
gi|71153339|sp|Q5R874.1|DHX9_PONAB RecName: Full=ATP-dependent RNA helicase A; Short=RHA; AltName:
Full=DEAH box protein 9; AltName: Full=Nuclear DNA
helicase II; Short=NDH II
gi|55730630|emb|CAH92036.1| hypothetical protein [Pongo abelii]
Length = 1269
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|1082769|pir||A47363 RNA helicase A - human
Length = 1279
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
>gi|296229583|ref|XP_002760334.1| PREDICTED: ATP-dependent RNA helicase A isoform 2 [Callithrix
jacchus]
Length = 1270
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|100913206|ref|NP_001348.2| ATP-dependent RNA helicase A [Homo sapiens]
gi|332811349|ref|XP_003308679.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Pan troglodytes]
gi|397508714|ref|XP_003824791.1| PREDICTED: ATP-dependent RNA helicase A [Pan paniscus]
gi|116241330|sp|Q08211.4|DHX9_HUMAN RecName: Full=ATP-dependent RNA helicase A; Short=RHA; AltName:
Full=DEAH box protein 9; AltName: Full=Leukophysin;
Short=LKP; AltName: Full=Nuclear DNA helicase II;
Short=NDH II
gi|119611544|gb|EAW91138.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_b [Homo
sapiens]
gi|187952519|gb|AAI37137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
gi|255652739|dbj|BAH90798.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, partial [synthetic
construct]
gi|410211166|gb|JAA02802.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Pan troglodytes]
gi|410260646|gb|JAA18289.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Pan troglodytes]
gi|410308470|gb|JAA32835.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Pan troglodytes]
Length = 1270
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|119611543|gb|EAW91137.1| DEAH (Asp-Glu-Ala-His) box polypeptide 9, isoform CRA_a [Homo
sapiens]
Length = 1014
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|332230603|ref|XP_003264483.1| PREDICTED: ATP-dependent RNA helicase A isoform 1 [Nomascus
leucogenys]
Length = 1270
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|388454543|ref|NP_001253117.1| ATP-dependent RNA helicase A [Macaca mulatta]
gi|383416221|gb|AFH31324.1| ATP-dependent RNA helicase A [Macaca mulatta]
gi|384945584|gb|AFI36397.1| ATP-dependent RNA helicase A [Macaca mulatta]
Length = 1275
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|403266627|ref|XP_003925470.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase A
[Saimiri boliviensis boliviensis]
Length = 1243
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVTSPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|328724252|ref|XP_003248081.1| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum]
Length = 190
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
KAFL+EWC KN+ +P+F+++ AG K RF+CE+ + G YVG GNSTNKKDAQ NA+KD
Sbjct: 5 KAFLHEWCAKNNLEPQFEIKQAGSKFNLRFICEVTVGGHNYVGVGNSTNKKDAQGNASKD 64
Query: 68 FVQYLVRSGQVNERDVPVENIPMTPTGPSVTVNTSKRF 105
++ YL R G V+ +P N P VN S+R
Sbjct: 65 YLLYLTRQGLVSTDSLP-SNCFSGPASNDSMVNASQRL 101
>gi|348578187|ref|XP_003474865.1| PREDICTED: ATP-dependent RNA helicase A-like [Cavia porcellus]
Length = 1291
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P ++ RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEFRAVGNKNRQKFMCEVRVEGFNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVTVNTSKRFSFIRRSSIGLPRS 118
A+DFV YLVR +V +VP + + P P VT T + ++S LP +
Sbjct: 62 ARDFVNYLVRINEVKSEEVP--TVGIAPPPPPVTEATDTATTDAGKNSESLPTT 113
>gi|307383|gb|AAB48855.1| RNA helicase A [Homo sapiens]
Length = 1279
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPTYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
>gi|301615908|ref|XP_002937403.1| PREDICTED: ATP-dependent RNA helicase A-like protein [Xenopus
(Silurana) tropicalis]
Length = 1257
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 56/78 (71%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P +++RAAG K RQ+F+CE+R+ G Y G GNSTNKKDAQTNAA+
Sbjct: 4 IKNFLYAWCGKKKLTPNYEIRAAGNKMRQKFMCEVRVDGFNYTGMGNSTNKKDAQTNAAR 63
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR ++ +VP
Sbjct: 64 DFVNYLVRVKEMKSDEVP 81
>gi|2961456|gb|AAC05725.1| RNA helicase A [Mus musculus]
Length = 1380
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYRGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
>gi|194210388|ref|XP_001489530.2| PREDICTED: ATP-dependent RNA helicase A [Equus caballus]
Length = 1272
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFTCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPT 93
A+DFV YLVR +V +VP + P+
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAIGVAPPPS 90
>gi|47205228|emb|CAF92278.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1091
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 60/89 (67%), Gaps = 11/89 (12%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELR-----------IAGIGYVGAGNST 55
VK FL WC K P +D+RAAG K+RQ+F+CE+R ++G Y+G GNST
Sbjct: 15 VKNFLYAWCGKKKLTPNYDIRAAGNKNRQKFMCEVRSDPASPTLQVQVSGFNYIGMGNST 74
Query: 56 NKKDAQTNAAKDFVQYLVRSGQVNERDVP 84
NKKDAQTNAA+DFV +LVR G+V +VP
Sbjct: 75 NKKDAQTNAARDFVNFLVRIGEVTATEVP 103
>gi|449802166|pdb|3VYY|A Chain A, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase A (dhx9)
gi|449802167|pdb|3VYY|B Chain B, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase A (dhx9)
Length = 91
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTP 92
A+DFV YLVR ++ +VP + P
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPP 89
>gi|355746108|gb|EHH50733.1| hypothetical protein EGM_01605 [Macaca fascicularis]
Length = 1275
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 GRDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>gi|395824901|ref|XP_003785689.1| PREDICTED: ATP-dependent RNA helicase A [Otolemur garnettii]
Length = 1271
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 59/88 (67%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKLNPTYEIRAVGNKNRQKFMCEVQVEGFNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTP 92
A+DFV YLVR ++ +VP + P
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAVGVVSPP 89
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 183 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 242
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 243 CALSLVRQLYHLGVV 257
>gi|281337823|gb|EFB13407.1| hypothetical protein PANDA_013142 [Ailuropoda melanoleuca]
Length = 1155
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 56/78 (71%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y+G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERD 82
A+DFV YLVR +V +
Sbjct: 62 ARDFVNYLVRINEVKSEE 79
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 183 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 242
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 243 CALSLVRQLYHLGVI 257
>gi|291222158|ref|XP_002731085.1| PREDICTED: ATP-dependent RNA helicase A-like protein-like
[Saccoglossus kowalevskii]
Length = 1325
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 55/78 (70%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P+++ R+AG KHRQRF+CE+R+ Y+G GNST+KKDAQ N A+
Sbjct: 4 IKNFLYSWCGKKKVVPQYEFRSAGSKHRQRFMCEVRVQDYDYIGVGNSTSKKDAQANCAR 63
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR+G +VP
Sbjct: 64 DFVNYLVRTGNCLASEVP 81
>gi|301776997|ref|XP_002923919.1| PREDICTED: ATP-dependent RNA helicase A-like [Ailuropoda
melanoleuca]
Length = 1276
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 56/78 (71%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y+G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERD 82
A+DFV YLVR +V +
Sbjct: 62 ARDFVNYLVRINEVKSEE 79
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 183 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 242
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 243 CALSLVRQLYHLGVI 257
>gi|355683896|gb|AER97227.1| DEAH box polypeptide 9 [Mustela putorius furo]
Length = 1056
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 56/78 (71%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y+G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYIGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERD 82
A+DFV YLVR +V +
Sbjct: 62 ARDFVNYLVRINEVKSEE 79
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 183 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 242
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 243 CALSLVRQLYHLGVI 257
>gi|449508002|ref|XP_002191685.2| PREDICTED: ATP-dependent RNA helicase A [Taeniopygia guttata]
Length = 1218
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK +L WC + P +++RAAG + RQ FLCE+R+ G YVG GNSTNKKDAQ+NA
Sbjct: 2 GDVKNYLYAWCGRRRVMPAYEIRAAGGRGRQTFLCEVRVEGFNYVGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A+DF+ YLVR ++ + ++P
Sbjct: 62 ARDFINYLVRVNEMKKDEIP 81
>gi|410986036|ref|XP_003999318.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase A
[Felis catus]
Length = 1341
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 55/78 (70%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERD 82
A+DFV YLVR +V +
Sbjct: 62 ARDFVNYLVRINEVKSEE 79
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 183 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 242
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 243 CALSLVRQLYHLGVI 257
>gi|449266453|gb|EMC77506.1| ATP-dependent RNA helicase A, partial [Columba livia]
Length = 855
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK +L WC + P +++RA G ++RQ FLCELR+ G Y+G G+STNKKDAQ+NA
Sbjct: 2 GDVKNYLYAWCGRRRLTPAYEIRAGGGRNRQTFLCELRVEGFNYIGMGSSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A+DFV YLVR ++ + +VP
Sbjct: 62 ARDFVNYLVRVNEMKKDEVP 81
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 177 KARLNQFFQKEKIQEEYKYTEMGPDHNRSFIAEMNIYVKQLGRRIFSREHGSNKKLAAQS 236
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 237 CACSLVRQLYHLGVI 251
>gi|405959793|gb|EKC25785.1| ATP-dependent RNA helicase A-like protein [Crassostrea gigas]
Length = 1464
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 54/85 (63%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL W K P ++ G KH+ RF CE+R G Y+ GNSTNKKDAQTNA
Sbjct: 2 GDIKQFLYAWLGKRKATPAYEFSQTGSKHKPRFKCEVRADGFDYIAVGNSTNKKDAQTNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIP 89
AKDFVQYLVR G V + +VP +P
Sbjct: 62 AKDFVQYLVRQGLVQQAEVPALEMP 86
>gi|395745460|ref|XP_003778270.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase A-like
[Pongo abelii]
Length = 1309
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDA 60
++GD VK FL W K P +++RA G K RQ+FLCE+++ G Y G GNSTNKKDA
Sbjct: 43 ITGD--VKNFLYAWXGKRKMTPSYEIRALGNKSRQKFLCEVQVEGYNYTGIGNSTNKKDA 100
Query: 61 QTNAAKDFVQYLVRSGQVNERDVP---VENIPMTPTGPSVTVN 100
Q NAA+DFV YLVR ++ +VP V ++P P T N
Sbjct: 101 QGNAARDFVNYLVRINEIKSEEVPAFGVASLPPLTDTPDTTAN 143
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F E+ I G + +NKK A +
Sbjct: 222 KAHLNQYFQKEKIQGEYKYTQVGPDHNRSFTAEITIYIKQLGRRIFAGEHGSNKKLAAQS 281
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 282 CALSLVRQLYHLGVV 296
>gi|198423925|ref|XP_002127604.1| PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 9
[Ciona intestinalis]
Length = 1243
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL W K P +D++ +G K R +F+CE+R+ GI YVG GNSTNKKDAQ NAA
Sbjct: 4 IKTFLYAWLGKQKMTPSYDIQPSGSKARPKFMCEVRVDGIPYVGIGNSTNKKDAQANAAY 63
Query: 67 DFVQYLVRSGQVNERDVPVENIPMT--PTGPSVTVN 100
DF YLVR+G++ ++P + + + P PS T +
Sbjct: 64 DFANYLVRAGKIQASEIPSKVVIASSAPQQPSSTYD 99
>gi|390340054|ref|XP_003725156.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase A-like
protein-like [Strongylocentrotus purpuratus]
Length = 1291
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL K P++D+R +GPKHRQRFLCE+R+ YVG GNST+KKD+Q NAAK
Sbjct: 4 LKSFLYSLLGKKKLTPDYDIRNSGPKHRQRFLCEVRVPTYSYVGVGNSTSKKDSQLNAAK 63
Query: 67 DFVQYLVRSGQ 77
DF+ +LVRS +
Sbjct: 64 DFLMFLVRSAE 74
>gi|313230916|emb|CBY18913.1| unnamed protein product [Oikopleura dioica]
Length = 1232
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 56/86 (65%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
VKA+L W QK QP +D+R A + R RF CELR G YV GN+ +KKD+Q++AA
Sbjct: 6 VKAWLYAWLQKKKVQPNYDIRPAPGRGRSRFKCELRATGFAYVAVGNAASKKDSQSHAAF 65
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTP 92
DF QYL+R GQ+ + + P N +TP
Sbjct: 66 DFCQYLIREGQILQSEFPYSNAGVTP 91
>gi|170055796|ref|XP_001863741.1| ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167875616|gb|EDS38999.1| ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 378
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 52/59 (88%)
Query: 29 AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERDVPVEN 87
+GPK+RQRFLCE+R+ + YVGAGNSTNKKDA+ NAA+DFV YLVR+GQ+++ DVP ++
Sbjct: 203 SGPKNRQRFLCEVRVPNVAYVGAGNSTNKKDAERNAARDFVNYLVRAGQISQSDVPSDD 261
>gi|86562256|ref|NP_495890.2| Protein RHA-1 [Caenorhabditis elegans]
gi|3913436|sp|Q22307.3|DHX9_CAEEL RecName: Full=Probable ATP-dependent RNA helicase A; AltName:
Full=Nuclear DNA helicase II; Short=NDH II
gi|77799164|emb|CAA90409.2| Protein RHA-1 [Caenorhabditis elegans]
Length = 1301
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 1 MSGDGLVKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKD 59
MS D VK FL W KN P +D ++ RQRF CELRI G GY GNSTNKKD
Sbjct: 1 MSRD--VKEFLYAWLGKNKYGNPTYDTKSETRSGRQRFKCELRITGFGYTAFGNSTNKKD 58
Query: 60 AQTNAAKDFVQYLVRSGQVNERDVP 84
A TNAA+DF QYLVR G++ + D+P
Sbjct: 59 AATNAAQDFCQYLVREGKMQQSDIP 83
>gi|328712008|ref|XP_001944312.2| PREDICTED: dosage compensation regulator-like [Acyrthosiphon pisum]
Length = 1430
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K FL+EWC+KN+ +P+F + AG + RF+CE+ I G Y+G GNS N K AQ NA+KD
Sbjct: 192 KTFLHEWCEKNNLEPQFKTKQAGSNRKPRFICEVIITGHDYIGIGNSANIKYAQENASKD 251
Query: 68 FVQYLVRSGQVNERDVPVENIPMTPTGPSVTVNTSKRF 105
F+ YL R G V+ D N P + VN S++
Sbjct: 252 FLLYLTRKGLVS-TDSLASNCISGPASNDLMVNASQKL 288
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR-FLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
KA+L+EWC KN+ + +F+ + AG + R F+CE+ + G Y+G GNSTNKK AQ NA+K
Sbjct: 5 KAYLHEWCAKNNLELQFETKQAGSNCKPRLFICEVTVTGHNYIGVGNSTNKKLAQANASK 64
Query: 67 DFVQYLVRSGQV 78
D++ YL + G +
Sbjct: 65 DYLLYLTKEGLI 76
>gi|268532474|ref|XP_002631365.1| C. briggsae CBR-RHA-1 protein [Caenorhabditis briggsae]
Length = 1402
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 1 MSGDGLVKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKD 59
MS D +K FL W KN P +D +A RQ+F CELR+ YV GNS+NKKD
Sbjct: 102 MSKD--IKEFLYAWLGKNKHPNPVYDTKAETRGGRQQFKCELRVTSFPYVAFGNSSNKKD 159
Query: 60 AQTNAAKDFVQYLVRSGQVNERDVP 84
A TNAA+DF +LVR G++ E ++P
Sbjct: 160 AATNAARDFCLFLVREGEMKESEIP 184
>gi|341879081|gb|EGT35016.1| CBN-RHA-1 protein [Caenorhabditis brenneri]
Length = 1316
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 1 MSGDGLVKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKD 59
MS D +K FL W +N P +D R +QRF CELR+ Y GNSTNKKD
Sbjct: 1 MSRD--IKEFLYAWLGRNKHGNPNYDTRGETRGAKQRFKCELRVPNFPYTAFGNSTNKKD 58
Query: 60 AQTNAAKDFVQYLVRSGQVNERDVP 84
A TNAA DF QYLVR G + + ++P
Sbjct: 59 AATNAALDFCQYLVREGAMQQNELP 83
>gi|358335935|dbj|GAA54529.1| ATP-dependent RNA helicase A [Clonorchis sinensis]
Length = 1353
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 7 VKAFLNEWCQKNSK-QPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
+K+++ + Q + PE+ + + AG + R RF+CELR Y+G GNST+KKDAQTN
Sbjct: 81 IKSWVYSYLQSTRRVAPEYTITQKPAG-RGRLRFICELRAESFDYIGLGNSTSKKDAQTN 139
Query: 64 AAKDFVQYLVRSGQVNERDVPVENIPMTPT 93
AA+DF YLVR G V +VPV + PT
Sbjct: 140 AARDFANYLVREGHVKASEVPVLQVGREPT 169
>gi|308509256|ref|XP_003116811.1| CRE-RHA-1 protein [Caenorhabditis remanei]
gi|308241725|gb|EFO85677.1| CRE-RHA-1 protein [Caenorhabditis remanei]
Length = 1338
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 1 MSGDGLVKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKD 59
MS D +K FL W +N P +D + R RF CELR+ YV GNS+NKKD
Sbjct: 1 MSRD--IKEFLYAWLGRNKYGNPAYDTKGETRGARSRFKCELRVPSFNYVAFGNSSNKKD 58
Query: 60 AQTNAAKDFVQYLVRSGQVNERDVP 84
A TNAA DF Q+LVR G++ + ++P
Sbjct: 59 AATNAALDFCQFLVRDGKMQQSEIP 83
>gi|257215814|emb|CAX83059.1| maleless [Schistosoma japonicum]
Length = 237
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 7 VKAFLNEWCQ-KNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
+K+FL + Q K PE+ + + + RFLCE R G YVG GNST KKDAQTNA
Sbjct: 7 IKSFLYTFLQTKKRIAPEYTFIEKPVGRGKVRFLCEARAEGFNYVGIGNSTTKKDAQTNA 66
Query: 65 AKDFVQYLVRSGQVNERDVPV-ENIPMTPTGPSVTVNTSKRFSF 107
A+DFV YLVR G+V VPV + + P+ PS T+ + SF
Sbjct: 67 ARDFVNYLVREGEVPASTVPVIKPGNVVPSEPSSTLPKNHGQSF 110
>gi|92081460|dbj|BAE93277.1| zinc finger protein [Ciona intestinalis]
Length = 947
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPK-HRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
VKA+L W K +P++++ A G +RQ ++CE+ + G YV G++ NKKD+QT AA
Sbjct: 243 VKAYLYAWLSKKKARPDYNITAHGSHPYRQTYVCEIVVHGYDYVAKGSAGNKKDSQTRAA 302
Query: 66 KDFVQYLVRSGQVNERDVPVEN 87
DF YLVR + E ++P+ +
Sbjct: 303 WDFCDYLVREKLMTESELPIRD 324
>gi|198426348|ref|XP_002130212.1| PREDICTED: zinc finger protein [Ciona intestinalis]
Length = 945
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPK-HRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
VKA+L W K +P++++ A G +RQ ++CE+ + G YV G++ NKKD+QT AA
Sbjct: 241 VKAYLYAWLSKKKARPDYNITAHGSHPYRQTYVCEIVVHGYDYVAKGSAGNKKDSQTRAA 300
Query: 66 KDFVQYLVRSGQVNERDVPVEN 87
DF YLVR + E ++P+ +
Sbjct: 301 WDFCDYLVREKLMTESELPIRD 322
>gi|256092860|ref|XP_002582095.1| ATP-dependent RNA Helicase [Schistosoma mansoni]
gi|353228861|emb|CCD75032.1| putative atp-dependent RNA helicase [Schistosoma mansoni]
Length = 1289
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 7 VKAFLNEWCQ-KNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
+K+FL + Q K PE+ + +++ RFLCE R G YVG GNST KK+AQTNA
Sbjct: 7 IKSFLYTFLQTKKRIAPEYTFIEKPVGRNKVRFLCEARADGFNYVGIGNSTTKKEAQTNA 66
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A+DFV YLVR G++ VP
Sbjct: 67 ARDFVNYLVREGEIPASSVP 86
>gi|324500369|gb|ADY40175.1| ATP-dependent RNA helicase A [Ascaris suum]
Length = 1452
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 7 VKAFLNEWC-QKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
+K +L W +K P +++ + R RF CELR++G +VG G S NKKDA TNAA
Sbjct: 5 IKGWLYGWLGKKKLGVPTYNITTNAGRGRARFKCELRVSGQPHVGLGVSVNKKDAATNAA 64
Query: 66 KDFVQYLVRSGQVNERDVP--------VENIPMTPTG 94
+DF Q+L+R ++ ++P NI +TP G
Sbjct: 65 RDFAQFLIRQKILDPSEMPALTASSLEATNIELTPGG 101
>gi|324506281|gb|ADY42685.1| ATP-dependent RNA helicase A [Ascaris suum]
Length = 792
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 7 VKAFLNEWC-QKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
+K +L W +K P +++ + R RF CELR++G +VG G S NKKDA TNAA
Sbjct: 5 IKGWLYGWLGKKKLGVPTYNITTNAGRGRARFKCELRVSGQPHVGLGVSVNKKDAATNAA 64
Query: 66 KDFVQYLVRSGQVNERDVP--------VENIPMTPTG 94
+DF Q+L+R ++ ++P NI +TP G
Sbjct: 65 RDFAQFLIRQKILDPSEMPALTASSLEATNIELTPGG 101
>gi|74146678|dbj|BAE41336.1| unnamed protein product [Mus musculus]
Length = 132
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 38 LCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERDVPVENI 88
+CE+R+ G Y G GNSTNKKDAQ+NAA+DFV YLVR +V +VP I
Sbjct: 1 MCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSEEVPAVGI 51
>gi|308459378|ref|XP_003092010.1| hypothetical protein CRE_01399 [Caenorhabditis remanei]
gi|308254470|gb|EFO98422.1| hypothetical protein CRE_01399 [Caenorhabditis remanei]
Length = 1335
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKD 59
MS D +K FL W +N+ +P +D R QRF C++ + + YV +G+S+ KKD
Sbjct: 1 MSRD--IKEFLYGWLGRNNYGKPVYDTRD-DKNAPQRFTCKISVPSLNYVASGSSSTKKD 57
Query: 60 AQTNAAKDFVQYLVRSGQVNERDVP 84
A TNAA DF Q+L+R G++ ++P
Sbjct: 58 AGTNAALDFCQFLIRDGKMMRSEIP 82
>gi|198431249|ref|XP_002129094.1| PREDICTED: similar to Zinc finger RNA-binding protein (hZFR)
(M-phase phosphoprotein homolog) [Ciona intestinalis]
Length = 1143
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL W +P +DV++ G + Q F CELR+ +VG G + +KK+AQT AA
Sbjct: 344 IKTFLYAWMGVRHLRPVYDVQSIGERPEQTFRCELRVNNYKFVGVGEAESKKEAQTEAAW 403
Query: 67 DFVQYLVRSGQVNERDVP 84
+F YLV+ G + ++P
Sbjct: 404 NFADYLVKQGDLLAEELP 421
>gi|198426942|ref|XP_002131661.1| PREDICTED: similar to Zfr protein [Ciona intestinalis]
Length = 1004
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKH--RQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
+KA+L WC + +PE++V G R F C+L I G+ YV + NKKDAQ A
Sbjct: 241 IKAYLYAWCGQRKLKPEYEVLPQGQVQLPRTMFTCKLHITGLDYVAEAQAPNKKDAQGKA 300
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVTVNTS 102
A +F + LV++G + ++P P P S V+T+
Sbjct: 301 AWNFCENLVKTGYMKASELPPR--PAQPVPKSQGVSTT 336
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELR--IAGIGYV--GAGNSTNKKDAQTNAAK 66
LN++CQ+ P+F GP+H + F+CEL+ ++ + V + +NKK A A
Sbjct: 365 LNQFCQREHTSPDFKHETHGPEHARIFVCELKLNVSSVQKVLLASERGSNKKQATAVCAL 424
Query: 67 DFVQYLVRSGQVNERDVPVENI 88
++ L + + + P++++
Sbjct: 425 SMIRQLYKERLIEKCGDPIKHV 446
>gi|351704636|gb|EHB07555.1| ATP-dependent RNA helicase A [Heterocephalus glaber]
Length = 1513
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 41 LRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVTVN 100
+R+ G Y G GNSTNKKDAQ+NAA+DFV YLVR +V +VP I P P VT
Sbjct: 121 VRVEGFNYTGMGNSTNKKDAQSNAARDFVNYLVRINEVKSEEVPTVGI--APPPPPVTEA 178
Query: 101 T 101
T
Sbjct: 179 T 179
>gi|431915942|gb|ELK16196.1| ATP-dependent RNA helicase A [Pteropus alecto]
Length = 1263
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 41 LRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVT 98
+R+ G Y+G GNSTNKKDAQ+NAA+DFV YLVR +V +VP I + P P +T
Sbjct: 11 VRVEGYNYIGMGNSTNKKDAQSNAARDFVNYLVRINEVKSEEVPA--IGVAPPLPHLT 66
>gi|313238810|emb|CBY20003.1| unnamed protein product [Oikopleura dioica]
Length = 859
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K++L WC + +PE+ G + R++C L I G+GY + +K++AQT AA
Sbjct: 146 IKSYLYAWCTQKKIKPEYTYTPIGRSPKVRYVCNLVIQGMGYEAQQEARSKREAQTLAAW 205
Query: 67 DFVQYLVRSGQVNERDVPVENIPM 90
DFV +V G + + ++P N+ M
Sbjct: 206 DFVDAMVAKGLIKKAELPTRNLQM 229
>gi|313241277|emb|CBY33555.1| unnamed protein product [Oikopleura dioica]
Length = 859
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K++L WC + +PE+ G + R++C L I G+GY + +K++AQT AA
Sbjct: 146 IKSYLYAWCTQKKIKPEYTYTPIGRSPKVRYVCNLVIQGMGYEAQQEARSKREAQTLAAW 205
Query: 67 DFVQYLVRSGQVNERDVPVENIPM 90
DFV +V G + + ++P N+ M
Sbjct: 206 DFVDAMVAKGLIKKAELPTRNLQM 229
>gi|313233113|emb|CBY24225.1| unnamed protein product [Oikopleura dioica]
Length = 741
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHR--QRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
VKAFL +C + PE++ + AG + + G YVG G + +K+AQT A
Sbjct: 120 VKAFLYAFCGRQRSLPEYETKPAGRDKNGWMSYFSTVAPTGFPYVGQGTAQTRKEAQTAA 179
Query: 65 AKDFVQYLVRSGQVNERDVPV 85
A DF+ YL + G +NE D+P+
Sbjct: 180 AWDFIDYLAKQGMINEMDLPL 200
>gi|313214423|emb|CBY42793.1| unnamed protein product [Oikopleura dioica]
Length = 626
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHR--QRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
VKAFL +C + PE++ + AG + + G YVG G + +K+AQT A
Sbjct: 5 VKAFLYAFCGRQRSLPEYETKPAGRDKNGWMSYFSTVAPTGFPYVGQGTAQTRKEAQTAA 64
Query: 65 AKDFVQYLVRSGQVNERDVPV 85
A DF+ YL + G +NE D+P+
Sbjct: 65 AWDFIDYLAKQGMINEMDLPL 85
>gi|355558958|gb|EHH15738.1| hypothetical protein EGK_01870 [Macaca mulatta]
Length = 1378
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 41 LRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERDVPVENI----PMTPTGPS 96
+++ G Y G GNSTNKKDAQ+NAA+DFV YLVR ++ +VP + P+T T P
Sbjct: 103 VQVEGYNYTGMGNSTNKKDAQSNAARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PD 161
Query: 97 VTVN 100
T N
Sbjct: 162 TTAN 165
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 247 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 306
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 307 CALSLVRQLYHLGVV 321
>gi|313219943|emb|CBY43644.1| unnamed protein product [Oikopleura dioica]
Length = 813
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K +L+ WC + PEFD + G +H++ F C ++I+G+ +V + +KK+AQ A
Sbjct: 119 IKGYLHIWCNQRRVTPEFDYKELGNRHKKLFSCSIQISGLDFVAIKEARSKKEAQNEATW 178
Query: 67 DFVQYLVRSGQVNERDVP 84
++ L G + + D P
Sbjct: 179 EYCNKLAELGFMEKEDFP 196
>gi|402593280|gb|EJW87207.1| hypothetical protein WUBG_01880, partial [Wuchereria bancrofti]
Length = 169
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 34 RQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERDVP 84
+ RF CELRI G +VG G S NKKDA TNAA+DF +L+R ++ ++P
Sbjct: 34 KTRFRCELRIPGQHHVGLGISVNKKDAATNAARDFAHFLIRQKLLDPTELP 84
>gi|313237547|emb|CBY12695.1| unnamed protein product [Oikopleura dioica]
Length = 853
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIG--YVGAGNSTNKKDAQTNA 64
+KA+L EWC + +PE+ A G + R++C L++AG+ + NKK+AQT
Sbjct: 136 IKAWLFEWCTQKKMKPEYSFTAKGKYPKVRYICTLKVAGLAKPLEAIQEAKNKKEAQTLC 195
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A +F LV +N+ +P
Sbjct: 196 AWNFCDQLVEHNMINQSSLP 215
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 6 LVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLC--ELRIAGIGYVGAGNSTNKKDAQTN 63
L ++ L+E+ K KQ + + +G ++F+C E+ I G + + + NKK AQ
Sbjct: 389 LARSRLSEFFHKQGKQLNCEEKESGGPFNKQFVCSTEIEIDGEKFAASATAPNKKSAQKK 448
Query: 64 AAKDFVQYLVRSGQV 78
A V L ++GQ+
Sbjct: 449 CALSMVIQLYKAGQI 463
>gi|313214863|emb|CBY41096.1| unnamed protein product [Oikopleura dioica]
Length = 750
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIG--YVGAGNSTNKKDAQTNA 64
+KA+L EWC + +PE+ A G + R++C L++AG+ + NKK+AQT
Sbjct: 136 IKAWLFEWCTQKKMKPEYSFTAKGKYPKVRYICTLKVAGLAKPLEAIQEAKNKKEAQTLC 195
Query: 65 AKDFVQYLVRSGQVNERDVP 84
A +F LV +N+ +P
Sbjct: 196 AWNFCDQLVEHNMINQSSLP 215
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 6 LVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLC--ELRIAGIGYVGAGNSTNKKDAQTN 63
L ++ L+E+ K KQ + + +G ++F+C E+ I G + + + NKK AQ
Sbjct: 389 LARSRLSEFFHKQGKQLNCEEKESGGPFNKQFVCSTEIEIDGEKFAASATAPNKKSAQKK 448
Query: 64 AAKDFVQYLVRSGQV 78
A V L ++GQ+
Sbjct: 449 CALSMVIQLYKAGQI 463
>gi|313246369|emb|CBY35283.1| unnamed protein product [Oikopleura dioica]
Length = 823
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FLN WC + +PE++ G + F+C+L+I Y+ + K++AQ + A
Sbjct: 215 IKGFLNIWCNQRRLKPEYEFIERGKPPKGTFICKLKIESFDYIAECEARTKREAQADVAW 274
Query: 67 DFVQYLVRSGQVNERDVP 84
D+ LV G ++ D+P
Sbjct: 275 DYALKLVSMGYCSKGDLP 292
>gi|313239731|emb|CBY14617.1| unnamed protein product [Oikopleura dioica]
Length = 870
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FLN WC + +PE++ G + F+C+L+I Y+ + K++AQ + A
Sbjct: 211 IKGFLNIWCNQRRLKPEYEFIERGKPPKGTFICKLKIESFDYIAECEARTKREAQADVAW 270
Query: 67 DFVQYLVRSGQVNERDVP 84
D+ LV G ++ D+P
Sbjct: 271 DYALKLVSMGYCSKGDLP 288
>gi|444730524|gb|ELW70906.1| ATP-dependent RNA helicase A [Tupaia chinensis]
Length = 1489
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 41 LRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERD 82
+R+ G Y G GNS NKKDAQ+NAA+DFV YLVR ++ +
Sbjct: 140 VRVEGFNYTGMGNSNNKKDAQSNAARDFVNYLVRINEIKSEE 181
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVG-----AGNSTNKKDAQT 62
KA LN++ QK Q E+ GP H + F+ E+ I I ++G + +NKK A
Sbjct: 285 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIY-IKHMGRRIFAREHGSNKKLAAQ 343
Query: 63 NAAKDFVQYLVRSGQV 78
+ A V+ L G V
Sbjct: 344 SCALSLVRQLYHLGVV 359
>gi|374386737|ref|ZP_09644234.1| ribonuclease III [Odoribacter laneus YIT 12061]
gi|373223298|gb|EHP45648.1| ribonuclease III [Odoribacter laneus YIT 12061]
Length = 247
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K+ L EW QKN K+ FDVR H+ RF C + I G +G GN +KK+A+ NAA+
Sbjct: 174 KSRLIEWGQKNRKELSFDVRENLKSHKNRFECAISIGGT-VMGNGNGASKKEAEQNAAER 232
Query: 68 FVQYLVRSGQ 77
++ L +
Sbjct: 233 VIEKLTEEAE 242
>gi|449662281|ref|XP_002164293.2| PREDICTED: ATP-dependent RNA helicase A-like protein-like [Hydra
magnipapillata]
Length = 1355
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 5 GLVKAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K FL W K K P F GP RF + +I GI Y+ G +KK+ +
Sbjct: 3 GLAKGFLFHWVGKQMKLIPHFYAVPDGP---HRFNYQAKIDGINYIAFGGGPSKKEGEAA 59
Query: 64 AAKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVTVNTSKRFS 106
AA+D + YL VN +PVE +P + +V K+ S
Sbjct: 60 AARDLLNYL-----VNNEIIPVEAVPPNMLQATTSVVEVKKSS 97
>gi|321458151|gb|EFX69224.1| maleless-like protein [Daphnia pulex]
Length = 1191
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 3 GDGLVKAFLNEWCQKNSKQPE-FDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
G+ +K FL + K + P + V + G + + CELR+ G +V G S++K++AQ
Sbjct: 5 GERDIKEFLYAYLMKKFRIPPVYVVNSMGDQ--SGYYCELRVRGFSFVATGRSSSKRNAQ 62
Query: 62 TNAAKDFVQYLVRSGQVNERDVPVEN 87
NAA FV +LV + E ++P N
Sbjct: 63 ANAANSFVAHLVCQQIMREEEIPNRN 88
>gi|324501431|gb|ADY40638.1| ATP-dependent RNA helicase A [Ascaris suum]
Length = 1262
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 7 VKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
+K +L W KN P +++ RF+CEL +AG + G + +KKDA AA
Sbjct: 5 IKNWLYGWLGKNRLGAPVYNITQTNCDG-ARFVCELIVAGHCHRSIGRAMSKKDATAKAA 63
Query: 66 KDFVQYLVRSGQVNERDVPVENIP 89
DFV +L+ ++ D+P P
Sbjct: 64 NDFVNFLIAEKLIDASDLPAAITP 87
>gi|62637420|ref|YP_227418.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83]
gi|115503280|gb|ABI99198.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83]
Length = 199
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 9 AFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDF 68
+ LNE+CQ S+ D+ ++GP H+ F L I+G+ + A ST KK+A+TNA K
Sbjct: 129 SILNEYCQYTSRDWFIDIISSGPIHKPLFTATLCISGVKFRSAIGST-KKEAKTNATKMA 187
Query: 69 VQYLVRSGQV 78
+ ++ + +
Sbjct: 188 MDLIINNSII 197
>gi|324501852|gb|ADY40820.1| ATP-dependent RNA helicase A [Ascaris suum]
Length = 1225
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 7 VKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
+K +L W KN P +++ RF+CEL +AG + G + +KKDA AA
Sbjct: 5 IKNWLYGWLGKNRLGAPVYNITQTNCDG-ARFVCELIVAGHCHRSIGRAMSKKDATAKAA 63
Query: 66 KDFVQYLVRSGQVNERDVPVENIP 89
DFV +L+ ++ D+P P
Sbjct: 64 NDFVNFLIAEKLIDASDLPAAITP 87
>gi|211956314|ref|YP_002302383.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84]
gi|115503109|gb|ABI99027.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84]
Length = 199
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 9 AFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDF 68
+ LNE+CQ S+ D+ ++GP H+ F L I+G+ + A ST KK+A+TNA +
Sbjct: 129 SVLNEYCQYTSRDWYIDIISSGPIHKPLFTATLCISGVKFRSAIGST-KKEAKTNATRMA 187
Query: 69 VQYLVRSGQV 78
+ ++ + +
Sbjct: 188 MDLIINNSII 197
>gi|357623380|gb|EHJ74558.1| hypothetical protein KGM_22318 [Danaus plexippus]
Length = 638
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 9 AFLNEWCQKNS-KQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ L E+C K PE+ + GP H++ FL ++++AGI Y A S NKK A+ +AA+
Sbjct: 569 SLLGEYCSKQKLGPPEYSLCFECGPDHKKNFLFKVKVAGIEYQPAVASANKKQAKADAAQ 628
Query: 67 DFVQYL 72
+Q L
Sbjct: 629 LALQKL 634
>gi|170587044|ref|XP_001898289.1| Probable ATP-dependent RNA helicase A [Brugia malayi]
gi|158594684|gb|EDP33268.1| Probable ATP-dependent RNA helicase A, putative [Brugia malayi]
Length = 1431
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 27/78 (34%)
Query: 34 RQRFLCELRIAGIGY---------------------------VGAGNSTNKKDAQTNAAK 66
+ RF CELRI G Y VG G S NKKDA T AA+
Sbjct: 34 KTRFRCELRIPGFTYLFPIIFASTGVIDIRINAAWSKTRQHHVGLGISVNKKDAATKAAR 93
Query: 67 DFVQYLVRSGQVNERDVP 84
DF +L+R ++ ++P
Sbjct: 94 DFAHFLIRQKLLDPTELP 111
>gi|328706652|ref|XP_001945206.2| PREDICTED: ATP-dependent RNA helicase A-like isoform 1
[Acyrthosiphon pisum]
Length = 1003
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 13 EWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
+WC KN+ +P++ + +F E+R+ Y+G GN+ ++ A+ A KD + YL
Sbjct: 33 KWCLKNNLKPQYKITDINEDQNVKF--EIRVPTYNYIGVGNAKTEEIARQKALKDILLYL 90
Query: 73 VRSGQV 78
++
Sbjct: 91 ADKNEI 96
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C K PE+ R GP H F+ + + G+ + + + K+AQ+NAA
Sbjct: 3 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 62
Query: 67 DFVQYLV 73
+QYL
Sbjct: 63 LAIQYLT 69
>gi|406946301|gb|EKD77552.1| hypothetical protein ACD_42C00297G0002 [uncultured bacterium]
Length = 223
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L EW Q + P ++ A G H Q F R+ G + G STN++ A+ AAK
Sbjct: 156 KTMLQEWLQARKMMLPVYEATATGDAHAQEFTVICRVVGFDFETTGVSTNRRKAEQIAAK 215
Query: 67 DFV 69
F+
Sbjct: 216 QFL 218
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C K PE+ R GP H F+ + + G+ + + + K+AQ+NAA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 67 DFVQYLV 73
+QYL
Sbjct: 72 LAIQYLT 78
>gi|328706650|ref|XP_003243163.1| PREDICTED: ATP-dependent RNA helicase A-like isoform 2
[Acyrthosiphon pisum]
Length = 1116
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 13 EWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
+WC KN+ +P++ + +F E+R+ Y+G GN+ ++ A+ A KD + YL
Sbjct: 33 KWCLKNNLKPQYKITDINEDQNVKF--EIRVPTYNYIGVGNAKTEEIARQKALKDILLYL 90
Query: 73 VRSGQV 78
++
Sbjct: 91 ADKNEI 96
>gi|110637800|ref|YP_678007.1| ribonuclease III [Cytophaga hutchinsonii ATCC 33406]
gi|110280481|gb|ABG58667.1| RNAse III [Cytophaga hutchinsonii ATCC 33406]
Length = 247
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 8 KAFLNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EWCQK +K+ EF + +G +H++ F E+R+A G G +KK A+ NAA+
Sbjct: 180 KSILLEWCQKENKKLEFVIIEESGHRHQKVFKAEVRVADESK-GQGIGFSKKKAEQNAAE 238
>gi|422012064|ref|ZP_16358804.1| ribonuclease III [Actinomyces georgiae F0490]
gi|394760973|gb|EJF43430.1| ribonuclease III [Actinomyces georgiae F0490]
Length = 240
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGI-GYVGAGNSTNKKDAQTNAA 65
K L E+ Q K + ++V GP HR+ F IAGI G VG+G +T+KK A+ AA
Sbjct: 171 KTLLVEYAQGKGLGEVSYEVEGEGPDHRRVFTARAFIAGIDGPVGSGRATSKKHAENAAA 230
Query: 66 KDFVQYL 72
++ + L
Sbjct: 231 QNAMGAL 237
>gi|313226819|emb|CBY21964.1| unnamed protein product [Oikopleura dioica]
Length = 816
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
KA+L W +P + + G + Q F C L G G G + +KK+AQ+ AA +
Sbjct: 40 KAWLYAWLGFRHIRPTYSWQTMGERPSQSFKCILSAEGFKEKGTGTAQSKKEAQSQAAWN 99
Query: 68 FVQYLVRS 75
F+ +L+ S
Sbjct: 100 FIDWLLGS 107
>gi|427412473|ref|ZP_18902665.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716280|gb|EKU79264.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 253
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+ Q+ KQ + + + +GP H + F E+RI G Y G+G +KK+A+ NAA
Sbjct: 177 KTMLQEYVQQEGEKQIVYTLLSESGPDHDKIFCMEVRIEGKAY-GSGTGKSKKEAEQNAA 235
Query: 66 KDFVQYLV 73
+ + YL+
Sbjct: 236 QVTLDYLI 243
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 8 KAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNS---TNKKDAQTN 63
K L E+CQKN P +DV H ++F+C++++ G Y NS NKKDA+ +
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQY----NSLWMDNKKDAEKH 63
Query: 64 AAKDFVQYLVRSGQVNERDVPVENI 88
AA + L + G P N+
Sbjct: 64 AATVALVELSKGGHKRLMAPPPRNL 88
>gi|320093928|ref|ZP_08025763.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
gi|319979140|gb|EFW10648.1| ribonuclease III [Actinomyces sp. oral taxon 178 str. F0338]
Length = 239
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 8 KAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGI-GYVGAGNSTNKKDAQTNAA 65
K L E+ Q++ + ++V GP HR+ F IAGI G VG+G +T+KK A+ AA
Sbjct: 170 KTLLVEYSQEHGLGEVSYEVEGEGPDHRRVFTARAFIAGIDGPVGSGRATSKKHAENAAA 229
Query: 66 KDFVQYL 72
++ + L
Sbjct: 230 QNAMGAL 236
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QK K+ P ++ V+ +GP+H + F + + G Y G +KK+A+ NAA
Sbjct: 180 KSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGASY-GPAQGKSKKEAEQNAA 238
Query: 66 K 66
K
Sbjct: 239 K 239
>gi|193787107|dbj|BAG52313.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 487 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 545
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 546 HAKATAATVVLQAM 559
>gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi]
gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi]
Length = 833
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 10 FLNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
LNE KN P++ +R +GP H + FL + I G Y A + NKK+A+ NAAK
Sbjct: 763 VLNELTSKNRWTPPQYTLRGDSGPSHSRMFLFSVEINGQSYTPAQSCNNKKEAKMNAAKL 822
Query: 68 FVQYL 72
++ L
Sbjct: 823 CLRAL 827
>gi|307203953|gb|EFN82860.1| SON protein [Harpegnathos saltator]
Length = 891
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 9 AFLNEWCQKNS-KQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ L E+C K P +D+ GP HR+ FL ++++ GI Y + S NKK A+ AA+
Sbjct: 821 SLLGEYCSKKKLGAPVYDLCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKAEAAQ 880
Query: 67 DFVQYL 72
+Q L
Sbjct: 881 ICLQTL 886
>gi|393771549|ref|ZP_10360020.1| ribonuclease III [Novosphingobium sp. Rr 2-17]
gi|392723036|gb|EIZ80430.1| ribonuclease III [Novosphingobium sp. Rr 2-17]
Length = 222
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++ PE+ V +GP H RF E+ + +G A + +K+DA+T AA
Sbjct: 156 KSALQEWAAGNRRRMPEYRLVERSGPDHAARFTVEVAVHNVGAAQA-TAHSKQDAETLAA 214
Query: 66 KDFVQ 70
K+F++
Sbjct: 215 KEFMR 219
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C K PE+ R GP H F + + G+ + + + K+AQ+NAA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 67 DFVQYLV 73
+QYL
Sbjct: 72 LAIQYLT 78
>gi|9633838|ref|NP_051918.1| gp029L [Rabbit fibroma virus]
gi|6578557|gb|AAF17911.1|AF170722_29 gp029L [Rabbit fibroma virus]
Length = 116
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQ 70
LNE+CQ S++ +V G H F + ++G + A S NKK+A+ NAAK+ +
Sbjct: 48 LNEYCQITSREWSINVTRTGQSHNPTFTAVVTVSGYSFKSATGS-NKKEARKNAAKEAMD 106
Query: 71 YLVR 74
+++
Sbjct: 107 IILK 110
>gi|157414210|ref|YP_001485076.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215]
gi|157388785|gb|ABV51490.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9215]
Length = 249
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 8 KAFLNEWCQKNS------KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
K L EWCQ K EF + PK RF C++ I G+ A ++K+ A+
Sbjct: 177 KTVLQEWCQSKGFDLPIYKIIEFSKKNGDPK---RFSCDIHIEGLKESSAFGKSHKQ-AE 232
Query: 62 TNAAKDFVQYLVRSGQV 78
TNAA+ ++ L+ +G++
Sbjct: 233 TNAARVLIEKLIAAGKI 249
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 8 KAFLNEWCQKN-SKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK PE+ V+ G +H + F C++ I G+ Y G G +KKDA+ NAA
Sbjct: 164 KTHLQEITQKQFGCLPEYVIVKEDGQEHNKTFYCDVMIKGVKY-GFGIGKSKKDAEKNAA 222
Query: 66 KDFVQYL 72
K+ V+ L
Sbjct: 223 KEAVKKL 229
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 2 SGDGLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDA 60
S GL K L E+ Q+N P + + GP H F + I G+ Y G G + +KK+A
Sbjct: 83 SMTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFAATVEIGGVLYKG-GTAKSKKEA 141
Query: 61 QTNAAK 66
+ AA+
Sbjct: 142 EVKAAR 147
>gi|334118125|ref|ZP_08492215.1| Ribonuclease 3 [Microcoleus vaginatus FGP-2]
gi|333460110|gb|EGK88720.1| Ribonuclease 3 [Microcoleus vaginatus FGP-2]
Length = 237
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 11 LNEWCQKN--SKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
EW Q N + P++ V+A G H+ FL ++ +A Y G G +KKDA+ NAA+D
Sbjct: 168 FQEWVQANGDTTPPKYVTVQAGGTPHKPEFLAKVYVAEKLY-GEGKGKSKKDAEKNAAED 226
Query: 68 FVQYLVRSGQV 78
+ L + G +
Sbjct: 227 ALAKLKKRGLI 237
>gi|332017864|gb|EGI58524.1| Protein SON [Acromyrmex echinatior]
Length = 808
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 9 AFLNEWC-QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ L E+C +K P +++ +GP HR+ FL ++++ GI Y + S+NKK A+ AA+
Sbjct: 738 SLLGEYCTKKKLGAPVYELCFESGPDHRKNFLFKVKVNGIEYKPSVASSNKKQAKAEAAQ 797
Query: 67 DFVQYL 72
+Q L
Sbjct: 798 ICLQNL 803
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E CQK + P+++ VR +GP H + F EL I G+ G G +KK+A+ AA
Sbjct: 168 KTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQGV-MRGIGRGRSKKEAEQMAA 226
Query: 66 KDFVQYLV 73
K+ + L
Sbjct: 227 KEALTQLA 234
>gi|399059718|ref|ZP_10745271.1| ribonuclease III [Novosphingobium sp. AP12]
gi|398039031|gb|EJL32176.1| ribonuclease III [Novosphingobium sp. AP12]
Length = 222
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++ PE+ V +GP H RF E+ + +G A + +K+DA+T AA
Sbjct: 156 KSALQEWTAGNRRRMPEYKLVDRSGPDHAARFTVEVSVHNVGTAQA-TAHSKQDAETQAA 214
Query: 66 KDFVQ 70
++F++
Sbjct: 215 EEFMR 219
>gi|402822513|ref|ZP_10871993.1| ribonuclease III [Sphingomonas sp. LH128]
gi|402263934|gb|EJU13817.1| ribonuclease III [Sphingomonas sp. LH128]
Length = 222
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++ PE+ + +GP H RF E+ + +G A + +K+DA+T AA
Sbjct: 156 KSALQEWTAGNRRRMPEYKLIERSGPDHAARFTVEVSVHNVGSAQA-TAHSKQDAETGAA 214
Query: 66 KDFVQ 70
++F++
Sbjct: 215 EEFMR 219
>gi|254526942|ref|ZP_05138994.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202]
gi|221538366|gb|EEE40819.1| ribonuclease III [Prochlorococcus marinus str. MIT 9202]
Length = 249
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 8 KAFLNEWCQKNS------KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
K L EWCQ K EF + PK RF C++ I G+ A ++K+ A+
Sbjct: 177 KTVLQEWCQSKGFDLPVYKIIEFSKKNGDPK---RFSCDIYIEGLKESSAFGKSHKQ-AE 232
Query: 62 TNAAKDFVQYLVRSGQV 78
TNAA+ ++ L+ +G++
Sbjct: 233 TNAARVLIEKLIAAGKI 249
>gi|326387678|ref|ZP_08209284.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370]
gi|326207724|gb|EGD58535.1| ribonuclease III [Novosphingobium nitrogenifigens DSM 19370]
Length = 233
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAA--GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
KA L EW N ++P A GP H F + + G+G + A S+ K++A+T+AA
Sbjct: 167 KAALQEWAAGNKRKPPIYTLVAREGPDHAATFTVSVTVKGVGEMTARGSS-KQEAETSAA 225
Query: 66 KDFVQ 70
++F++
Sbjct: 226 REFMK 230
>gi|444721324|gb|ELW62066.1| Protein SON [Tupaia chinensis]
Length = 798
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 706 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 764
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 765 HAKATAATVVLQAM 778
>gi|408684523|gb|AFU76962.1| m29L [Myxoma virus]
gi|408684690|gb|AFU77128.1| m29L [Myxoma virus]
gi|408686370|gb|AFU78798.1| m29L [Myxoma virus]
gi|408686705|gb|AFU79131.1| m29L [Myxoma virus]
gi|408686873|gb|AFU79298.1| m29L [Myxoma virus]
gi|408687377|gb|AFU79799.1| m29L [Myxoma virus]
gi|408687712|gb|AFU80132.1| m29L [Myxoma virus]
gi|408688048|gb|AFU80466.1| m29L [Myxoma virus]
gi|408688217|gb|AFU80634.1| m29L [Myxoma virus]
Length = 115
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQ 70
LNE+CQ ++ +V AG H F + ++G + A S NKK+A+ NAAK+ +
Sbjct: 47 LNEYCQITFREWSINVTRAGQSHSPTFTAVVTVSGYSFKSATGS-NKKEARKNAAKEAMD 105
Query: 71 YLVR 74
+++
Sbjct: 106 VILK 109
>gi|9633665|ref|NP_051743.1| m29L [Myxoma virus]
gi|6523884|gb|AAF14917.1|AF170726_33 m29L [Myxoma virus]
gi|170664495|gb|ACB28652.1| m29L [Myxoma virus]
gi|170664667|gb|ACB28823.1| m29L [recombinant virus 6918VP60-T2]
gi|301134555|gb|ADK63669.1| m29L [Myxoma virus]
gi|408684857|gb|AFU77294.1| m29L [Myxoma virus]
gi|408685025|gb|AFU77461.1| m29L [Myxoma virus]
gi|408685195|gb|AFU77630.1| m29L [Myxoma virus]
gi|408685365|gb|AFU77799.1| m29L [Myxoma virus]
gi|408685530|gb|AFU77963.1| m29L [Myxoma virus]
gi|408685699|gb|AFU78131.1| m29L [Myxoma virus]
gi|408685868|gb|AFU78299.1| m29L [Myxoma virus]
gi|408686033|gb|AFU78463.1| m29L [Myxoma virus]
gi|408686203|gb|AFU78632.1| m29L [Myxoma virus]
gi|408686538|gb|AFU78965.1| m29L [Myxoma virus]
gi|408687042|gb|AFU79466.1| m29L [Myxoma virus]
gi|408687209|gb|AFU79632.1| m29L [Myxoma virus]
gi|408687544|gb|AFU79965.1| m29L [Myxoma virus]
gi|408687880|gb|AFU80299.1| m29L [Myxoma virus]
Length = 115
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQ 70
LNE+CQ ++ +V AG H F + ++G + A S NKK+A+ NAAK+ +
Sbjct: 47 LNEYCQITFREWSINVTRAGQSHSPTFTAVVTVSGYSFKSATGS-NKKEARKNAAKEAMD 105
Query: 71 YLVR 74
+++
Sbjct: 106 VILK 109
>gi|383864907|ref|XP_003707919.1| PREDICTED: uncharacterized protein LOC100879799 [Megachile
rotundata]
Length = 914
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 9 AFLNEWCQKNSK-QPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ L E+C K P +++ GP HR+ FL ++++ GI Y + S NKK A+ AA+
Sbjct: 835 SLLGEYCSKRKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKAEAAQ 894
Query: 67 DFVQYL 72
+Q L
Sbjct: 895 ICLQTL 900
>gi|376248822|ref|YP_005140766.1| ribonuclease III [Corynebacterium diphtheriae HC04]
gi|376251621|ref|YP_005138502.1| ribonuclease III [Corynebacterium diphtheriae HC03]
gi|372113125|gb|AEX79184.1| ribonuclease III [Corynebacterium diphtheriae HC03]
gi|372115390|gb|AEX81448.1| ribonuclease III [Corynebacterium diphtheriae HC04]
Length = 249
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 14 WCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
++N + P++ GP+H Q F E+ + G +G G TNKK A+ AA V +L
Sbjct: 185 LAERNLEMPKYTSTVTGPEHEQTFTAEVAVHGT-VLGTGVGTNKKLAEQAAAHKAVGFL 242
>gi|443314193|ref|ZP_21043774.1| ribonuclease III [Leptolyngbya sp. PCC 6406]
gi|442786217|gb|ELR95976.1| ribonuclease III [Leptolyngbya sp. PCC 6406]
Length = 224
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW + + PE+ V A+GP H ++F+ E+RI G Y G G K+DA+ AA
Sbjct: 156 KSQLQEWSLATTGEIPEYVMVEASGPDHAKQFVVEVRIQGQVY-GRGQGQRKQDAEKQAA 214
Query: 66 K 66
+
Sbjct: 215 R 215
>gi|307169155|gb|EFN61971.1| SON protein [Camponotus floridanus]
Length = 883
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 9 AFLNEWCQKNS-KQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ L E+C K P +++ GP HR+ FL ++++ GI Y + S NKK A+ AA+
Sbjct: 813 SLLGEYCSKKKLGAPVYELCFECGPDHRKNFLFKVKVNGIEYKPSVASPNKKQAKAEAAQ 872
Query: 67 DFVQYL 72
+Q L
Sbjct: 873 ICLQSL 878
>gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5]
gi|7531189|sp|O67082.1|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5]
Length = 221
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
gi|83753759|pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
gi|83753777|pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
gi|90109240|pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>gi|398382919|ref|ZP_10540996.1| ribonuclease III [Sphingobium sp. AP49]
gi|397725629|gb|EJK86077.1| ribonuclease III [Sphingobium sp. AP49]
Length = 223
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRA--AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++P V +GP H RF + I G+G A +K++A+T AA
Sbjct: 156 KSALQEWAASNKRKPPEYVMTDRSGPHHALRFTVTVSIKGVGEASA-TGGSKQEAETAAA 214
Query: 66 KDFVQYLV 73
K ++ L
Sbjct: 215 KALLEQLA 222
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+CQ+ + P + V GP H++ F + I G Y G G+ +KK+A+ AA
Sbjct: 166 KTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIY-GEGSGKSKKEAEQKAA 224
Query: 66 KDFVQYLVRSGQVNERDV--PVENIP 89
KD + L R+ RDV P +N P
Sbjct: 225 KDALSRLARTS----RDVLQPGKNAP 246
>gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+CQ+ + P + V GP H++ F + I G Y G G+ +KK+A+ AA
Sbjct: 166 KTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIY-GEGSGKSKKEAEQKAA 224
Query: 66 KDFVQYLVRSGQVNERDV--PVENIP 89
KD + L R+ RDV P +N P
Sbjct: 225 KDALSRLARTS----RDVLQPGKNAP 246
>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
Length = 246
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V +GP HR+ F + +AG +G GN T KK+A+ AA+
Sbjct: 186 PEYRVEDSGPDHRKEFTATVLVAGRA-LGEGNGTTKKEAEQKAAE 229
>gi|375291202|ref|YP_005125742.1| ribonuclease III [Corynebacterium diphtheriae 241]
gi|376246036|ref|YP_005136275.1| ribonuclease III [Corynebacterium diphtheriae HC01]
gi|376293537|ref|YP_005165211.1| ribonuclease III [Corynebacterium diphtheriae HC02]
gi|371580873|gb|AEX44540.1| ribonuclease III [Corynebacterium diphtheriae 241]
gi|372108666|gb|AEX74727.1| ribonuclease III [Corynebacterium diphtheriae HC01]
gi|372110860|gb|AEX76920.1| ribonuclease III [Corynebacterium diphtheriae HC02]
Length = 249
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 14 WCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
++N + P + GP+H Q F E+ + G +G G TNKK A+ AA V +L
Sbjct: 185 LAERNLEMPTYTSTVTGPEHEQTFTAEVAVHGT-VLGTGVGTNKKLAEQAAAHKAVGFL 242
>gi|339500023|ref|YP_004698058.1| ribonuclease 3 [Spirochaeta caldaria DSM 7334]
gi|338834372|gb|AEJ19550.1| Ribonuclease 3 [Spirochaeta caldaria DSM 7334]
Length = 249
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E CQ+ K P + + + GP H + F E+ + G+ Y G G NKK+A+ AA
Sbjct: 180 KTLLQEKCQQLYKNYPTYTLLKRTGPDHERMFWVEVHVNGVAY-GPGIGKNKKEAEQEAA 238
Query: 66 K 66
K
Sbjct: 239 K 239
>gi|156368791|ref|XP_001627875.1| predicted protein [Nematostella vectensis]
gi|156214837|gb|EDO35812.1| predicted protein [Nematostella vectensis]
Length = 803
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGY----VGAGNSTNKKDAQTN 63
K+ L+++ Q+N EF A GP H + F CEL + + G N++ KK A +
Sbjct: 32 KSRLHQFLQQNRLPAEFKYGAVGPDHNRAFKCELSVFVKSHRRNIHGTANASTKKQAAQS 91
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 92 CALSLVRQLFHMGAI 106
>gi|332019072|gb|EGI59604.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Acromyrmex echinatior]
Length = 358
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 10 FLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
L E K P ++ ++++F+C + A + G GNS KK+A+ NAAK+ +
Sbjct: 8 LLQELSIKRGFTPIYNFSEKNINYQKQFICNVACAKLITHGTGNS--KKEAKHNAAKNML 65
Query: 70 QYLVRSGQVNERDVPVE-NIPMTPTGPSVT 98
L N ++P+ IP T P VT
Sbjct: 66 SLLA----TNHNEIPLSVVIPQVVTSPIVT 91
>gi|376290735|ref|YP_005162982.1| ribonuclease III [Corynebacterium diphtheriae C7 (beta)]
gi|372104131|gb|AEX67728.1| ribonuclease III [Corynebacterium diphtheriae C7 (beta)]
Length = 249
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 14 WCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
++N + P + GP+H Q F E+ + G +G G TNKK A+ AA V +L
Sbjct: 185 LAERNLEMPTYTSTVTGPEHEQTFTAEVAVHGT-VLGTGVGTNKKLAEQAAAHKAVGFL 242
>gi|376288050|ref|YP_005160616.1| ribonuclease III [Corynebacterium diphtheriae BH8]
gi|371585384|gb|AEX49049.1| ribonuclease III [Corynebacterium diphtheriae BH8]
Length = 249
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 14 WCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
++N + P + GP+H Q F E+ + G +G G TNKK A+ AA V +L
Sbjct: 185 LAERNLEMPTYTSTVTGPEHEQTFTAEVAVHGT-VLGTGVGTNKKLAEQAAAHKAVGFL 242
>gi|38234119|ref|NP_939886.1| ribonuclease III [Corynebacterium diphtheriae NCTC 13129]
gi|375293404|ref|YP_005127943.1| ribonuclease III [Corynebacterium diphtheriae INCA 402]
gi|376257435|ref|YP_005145326.1| ribonuclease III [Corynebacterium diphtheriae VA01]
gi|419861105|ref|ZP_14383743.1| ribonuclease III [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
gi|81564732|sp|Q6NGH3.1|RNC_CORDI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|38200381|emb|CAE50069.1| ribonuclease III [Corynebacterium diphtheriae]
gi|371583075|gb|AEX46741.1| ribonuclease III [Corynebacterium diphtheriae INCA 402]
gi|372119952|gb|AEX83686.1| ribonuclease III [Corynebacterium diphtheriae VA01]
gi|387982174|gb|EIK55681.1| ribonuclease III [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
Length = 249
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 14 WCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
++N + P + GP+H Q F E+ + G +G G TNKK A+ AA V +L
Sbjct: 185 LAERNLEMPTYTSTVTGPEHEQTFTAEVAVHGT-VLGTGVGTNKKLAEQAAAHKAVGFL 242
>gi|298346956|ref|YP_003719643.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
gi|298237017|gb|ADI68149.1| ribonuclease III [Mobiluncus curtisii ATCC 43063]
Length = 249
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 8 KAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
K L+E+ NS +PE+ V+ +GP H + F ++RIAG +G G T+KK
Sbjct: 179 KTHLSEFAAANSLGEPEYVVQGSGPDHARVFTAQIRIAG-EVLGEGQGTSKK 229
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG+ + G T KK AQ N
Sbjct: 86 GIYKNLLQETAHRAGLKLPVYTTVRSGPGHTPIFTCTVELAGMSFTGDPAKT-KKQAQKN 144
Query: 64 AA-------KDFVQYLV 73
AA K F YLV
Sbjct: 145 AAMAAWSALKHFKSYLV 161
>gi|304389333|ref|ZP_07371298.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315655502|ref|ZP_07908401.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
gi|315656591|ref|ZP_07909478.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|304327451|gb|EFL94684.1| ribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315490157|gb|EFU79783.1| ribonuclease III [Mobiluncus curtisii ATCC 51333]
gi|315492546|gb|EFU82150.1| ribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length = 249
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 8 KAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
K L+E+ NS +PE+ V+ +GP H + F ++RIAG +G G T+KK
Sbjct: 179 KTHLSEFAAANSLGEPEYVVQGSGPDHARVFTAQIRIAG-EVLGEGQGTSKK 229
>gi|17046379|gb|AAL34500.1|AF380182_1 SON DNA binding protein isoform D [Homo sapiens]
Length = 147
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 55 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 113
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 114 HAKATAATVVLQAM 127
>gi|327262381|ref|XP_003216003.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Anolis carolinensis]
Length = 439
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 9 AFLNEWCQKNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
+ LNE+ KN K EF + + GP H+ F +I G +G G NK A+ NAAK
Sbjct: 117 SLLNEYALKNKKIVEFGLESKDGPDHKPVFSQSCKIDG-EILGVGTGNNKNIAKFNAAK- 174
Query: 68 FVQYLVRSGQVNER----DVPVENI 88
+ Y +GQ R D P ++I
Sbjct: 175 -MAYEKLTGQATARAENDDAPSDSI 198
>gi|406708413|ref|YP_006758765.1| double-stranded RNA-binding protein,RNase3-like protein [alpha
proteobacterium HIMB59]
gi|406654189|gb|AFS49588.1| double-stranded RNA-binding protein,RNase3-like protein [alpha
proteobacterium HIMB59]
Length = 215
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K ++ E+ QK +K P++ + G KHR +FL EL+I + G G S K+ A+ AA
Sbjct: 148 KTYIQEYSQKKNKMIPQYKLINELGTKHRPKFLVELKIDDLIVEGEGIS--KQKAEIAAA 205
Query: 66 KDFVQYL 72
K ++ +
Sbjct: 206 KKMIKLI 212
>gi|334142355|ref|YP_004535563.1| ribonuclease III [Novosphingobium sp. PP1Y]
gi|359401286|ref|ZP_09194256.1| ribonuclease III [Novosphingobium pentaromativorans US6-1]
gi|333940387|emb|CCA93745.1| ribonuclease III [Novosphingobium sp. PP1Y]
gi|357597357|gb|EHJ59105.1| ribonuclease III [Novosphingobium pentaromativorans US6-1]
Length = 222
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++ PE+ + GP H +F E+ I +G A +++K+DA+T AA
Sbjct: 156 KSALQEWAAGNRRRMPEYRLLERTGPDHASQFTVEVTIHHVGSAQA-TASSKQDAETQAA 214
Query: 66 KDFVQ 70
++F++
Sbjct: 215 EEFMK 219
>gi|87199824|ref|YP_497081.1| ribonuclease III [Novosphingobium aromaticivorans DSM 12444]
gi|87135505|gb|ABD26247.1| RNAse III [Novosphingobium aromaticivorans DSM 12444]
Length = 252
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKNSKQPEFD--VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
KA L EW N ++P V GP H F + + G+G A S+ K++A+T AA
Sbjct: 186 KAALQEWAAGNRRKPPVYTLVSREGPDHAATFTVSVEVKGVGEASARGSS-KQEAETAAA 244
Query: 66 KDFVQ 70
+ F+Q
Sbjct: 245 RAFMQ 249
>gi|310828474|ref|YP_003960831.1| ribonuclease III [Eubacterium limosum KIST612]
gi|308740208|gb|ADO37868.1| ribonuclease III [Eubacterium limosum KIST612]
Length = 222
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 1 MSGDGLVKAF---LNEWCQKNSKQP-EFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNST 55
+SG GL+K + L E QK+S E+ + ++ GP+H + F +L G+ V G
Sbjct: 144 LSG-GLIKDYKTELQEQIQKHSDNAIEYVLEKSEGPEHNKTFFIDLTFNGV-VVSKGTGK 201
Query: 56 NKKDAQTNAAKDFV 69
+KK+A+ NAAK+++
Sbjct: 202 SKKEAEQNAAKNYL 215
>gi|340757909|ref|ZP_08694501.1| ribonuclease 3 [Fusobacterium varium ATCC 27725]
gi|251836195|gb|EES64732.1| ribonuclease 3 [Fusobacterium varium ATCC 27725]
Length = 235
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+ Q+ K P ++V R GP H++ F E+RI G G NKK A+ +AA
Sbjct: 163 KTILQEYSQREYKIIPSYEVIRETGPDHQKVFEIEVRIGE--RTGRGTGKNKKSAEQSAA 220
Query: 66 KDFVQYL 72
K+ + L
Sbjct: 221 KELCKKL 227
>gi|292609374|ref|XP_694356.4| PREDICTED: hypothetical protein LOC565999 [Danio rerio]
Length = 1079
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 11 LNEWCQKNS-KQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDF 68
L E C K QPEF V +GP HR+ FL ++ + G Y S NKK A+ AA
Sbjct: 994 LMEMCNKKKWPQPEFVMVHHSGPDHRKNFLFKVVVNGSDYQPQSASPNKKHAKAMAATVA 1053
Query: 69 VQYL 72
+Q +
Sbjct: 1054 LQAM 1057
>gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
gi|226741367|sp|B6J4J9.1|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
Length = 233
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>gi|313229252|emb|CBY23838.1| unnamed protein product [Oikopleura dioica]
Length = 343
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 9 AFLNEWCQKNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
+ L E CQK SK P +D+ G H+ F+ + + G G+ T+KK A+ AA++
Sbjct: 53 SMLQELCQKLSKTPRYDLLTMEGRAHQPSFVFRCVVGDL--TGEGHGTSKKSAKHQAAEN 110
Query: 68 FVQYLVRSGQV-NERDVPVE 86
+ L +SG V E +P++
Sbjct: 111 VLAQL-KSGVVPGEEKLPIK 129
>gi|212212136|ref|YP_002303072.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
gi|226741368|sp|B6IYZ9.1|RNC_COXB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212010546|gb|ACJ17927.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
Length = 233
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii]
Length = 233
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 256
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C + + P + A GP+H Q F +AG+ VG G NKK A+ AA+
Sbjct: 177 KTTLQELCAELKAPMPVYSATATGPEHDQTFSAVATVAGLS-VGNGQGHNKKLAEQQAAQ 235
Query: 67 DFVQYL 72
+ Q L
Sbjct: 236 EACQTL 241
>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
Length = 244
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+ QK K P + V+ GP H + F E++I G Y G G NKK+A+ +AA
Sbjct: 174 KTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIEVKIDGKVY-GPGKGKNKKEAEQHAA 232
>gi|154707005|ref|YP_001423899.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
gi|165919331|ref|ZP_02219417.1| ribonuclease III [Coxiella burnetii Q321]
gi|189043305|sp|A9KFA0.1|RNC_COXBN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|154356291|gb|ABS77753.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
gi|165916991|gb|EDR35595.1| ribonuclease III [Coxiella burnetii Q321]
Length = 233
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis]
gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis]
Length = 873
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10 FLNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
LNE KN P++ ++ +GP H + FL + I G Y A NKK+A+ NAAK
Sbjct: 803 VLNELTSKNKWTPPQYTLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEAKLNAAKL 862
Query: 68 FVQYL 72
++ L
Sbjct: 863 CLRAL 867
>gi|406945190|gb|EKD76766.1| hypothetical protein ACD_42C00622G0001, partial [uncultured
bacterium]
Length = 130
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L EW Q + P ++ G H Q F R+ G+ + G ST+++ A+ AAK
Sbjct: 63 KTTLQEWMQARQMPLPLYECTVTGDAHEQEFTVTCRVEGLAFETIGVSTSRRKAEQIAAK 122
Query: 67 DFV 69
F+
Sbjct: 123 LFL 125
>gi|94497606|ref|ZP_01304175.1| ribonuclease III [Sphingomonas sp. SKA58]
gi|94423023|gb|EAT08055.1| ribonuclease III [Sphingomonas sp. SKA58]
Length = 227
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 8 KAFLNEWCQKNSKQP-EFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++P E+ + +GP+H RF + I G G A +K++A+T AA
Sbjct: 160 KSALQEWAAANRRKPPEYQMTDRSGPQHALRFTVAVSIKGAGEASA-TGASKQEAETAAA 218
Query: 66 KDFVQYLV 73
K ++ L
Sbjct: 219 KALLEKLA 226
>gi|428174132|gb|EKX43030.1| hypothetical protein GUITHDRAFT_111072 [Guillardia theta CCMP2712]
Length = 635
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 10 FLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
L C + K EF +R GP H + F ++ I G+ +G G + KK AQ AA++ +
Sbjct: 390 HLQHACSRLHKMMEFSMREEGPPHSKTFHADVVIEGV-VMGRGTAPKKKGAQGLAAREAL 448
Query: 70 QYLVRSGQVNERDVP 84
L G N + P
Sbjct: 449 GKLELEGWSNLQPPP 463
>gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493]
gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331]
gi|30581027|sp|P51837.2|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043306|sp|A9N942.1|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493]
gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331]
Length = 233
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP HR+ F + +AG + G GN T KK+A+ AA+
Sbjct: 171 PEYKVEDTGPDHRKEFSATVLVAGRDF-GNGNGTTKKEAEQKAAE 214
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V +GP H++ F +R+ G+ Y G+G +KK+A+ AA+
Sbjct: 196 PEYHVAESGPDHQKTFRATVRVGGVTY-GSGEGRSKKEAEQRAAE 239
>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
Length = 256
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C + + P + A GP+H Q F +AG+ VG G NKK A+ AA+
Sbjct: 177 KTTLQELCAELKAPMPVYSATATGPEHDQTFSAVATVAGL-TVGNGQGHNKKLAEQQAAQ 235
Query: 67 DFVQYL 72
+ Q L
Sbjct: 236 EACQTL 241
>gi|313243028|emb|CBY39738.1| unnamed protein product [Oikopleura dioica]
Length = 324
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 9 AFLNEWCQKNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
+ L E CQK SK P +D+ G H+ F+ + + G G+ T+KK A+ AA++
Sbjct: 34 SMLQELCQKLSKTPRYDLLTMEGRAHQPSFVFRCVVGDL--TGEGHGTSKKSAKHQAAEN 91
Query: 68 FVQYLVRSGQV-NERDVPVE 86
+ L +SG V E +P++
Sbjct: 92 VLAQL-KSGVVPGEEKLPIK 110
>gi|123969345|ref|YP_001010203.1| ribonuclease III [Prochlorococcus marinus str. AS9601]
gi|123199455|gb|ABM71096.1| putative ribonuclease III [Prochlorococcus marinus str. AS9601]
Length = 249
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHR--QRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
K L EWCQ K P + + K+ +RF C + I G+ A ++K+ A+TNA
Sbjct: 177 KTVLQEWCQSKGFDLPVYKIIEVSKKNGDPERFYCNIFIEGLKESSAFGKSHKQ-AETNA 235
Query: 65 AKDFVQYLVRSGQV 78
A+ ++ + GQ+
Sbjct: 236 ARVLIEKFIAKGQI 249
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+CQ+ + P + V GP H++ F + I G Y G G+ +KK+A+ AA
Sbjct: 166 KTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIY-GEGSGRSKKEAEQKAA 224
Query: 66 KDFVQYLVRSGQVNERDV 83
KD + L R+ RDV
Sbjct: 225 KDALSRLARTS----RDV 238
>gi|406945288|gb|EKD76827.1| hypothetical protein ACD_42C00585G0003 [uncultured bacterium]
Length = 221
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 11 LNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
L EW Q K P + + G H Q F+ ++ G+ G ST+++ A+ AAK F+
Sbjct: 156 LQEWLQAKKMPLPTYACKILGKAHEQTFVVTCKVTGMPMQTEGKSTSRRKAEQIAAKYFL 215
Query: 70 QYL 72
+ L
Sbjct: 216 EKL 218
>gi|269966648|ref|ZP_06180727.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
gi|269828715|gb|EEZ82970.1| hypothetical protein VMC_21570 [Vibrio alginolyticus 40B]
Length = 445
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 7 VKAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
+K L E+ Q Q P++DV +GP+H Q F + I VG+GNS KK A +A
Sbjct: 112 MKMVLQEYAQSRKLQAPQYDVVEISGPQHNQVFSVQCSIVNEKAVGSGNS--KKKASEDA 169
Query: 65 AKDFVQYLVRSGQVNER 81
A Q L ++ + R
Sbjct: 170 AIKLYQKLNKAKSTSHR 186
>gi|381201711|ref|ZP_09908836.1| ribonuclease III [Sphingobium yanoikuyae XLDN2-5]
Length = 226
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRA--AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++P V +GP H RF + I G G A +K++A+T AA
Sbjct: 159 KSALQEWAASNKRKPPEYVMTDRSGPHHALRFTVTVSIKGAGEASA-TGGSKQEAETAAA 217
Query: 66 KDFVQYLV 73
K ++ L
Sbjct: 218 KALLEQLA 225
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ N P + +GP H F C + +AG+ + G T KK A+ N
Sbjct: 86 GVFKNLLQETAQRANVPLPTYTTTRSGPGHLPVFTCVVEVAGMNFTGDAGKT-KKQAEKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|428317702|ref|YP_007115584.1| RNAse III [Oscillatoria nigro-viridis PCC 7112]
gi|428241382|gb|AFZ07168.1| RNAse III [Oscillatoria nigro-viridis PCC 7112]
Length = 230
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 11 LNEWC-QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDF 68
EW K + PE+ + GP H + F ++ ++G Y G G K+DA+ NAA+D
Sbjct: 162 FQEWALAKFGQNPEYSIIDEEGPDHAKEFTAQVYVSGKMY-GVGRGRRKQDAEKNAAEDA 220
Query: 69 VQYLVRSGQV 78
+ L + G +
Sbjct: 221 LAKLKKPGLI 230
>gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992554|gb|EEC58556.1| ribonuclease III [[Bacteroides] pectinophilus ATCC 43243]
Length = 234
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E Q ++K PE+ + GP+H + F E+ + G +G G+ NKK A+ AA
Sbjct: 168 KTILQEILQADNKTPEYRITGEEGPEHSKTFSAEV-LDGSTVLGHGSGHNKKAAEQQAAY 226
Query: 67 DFVQYL 72
D + L
Sbjct: 227 DAILRL 232
>gi|427407563|ref|ZP_18897765.1| ribonuclease III [Sphingobium yanoikuyae ATCC 51230]
gi|425714067|gb|EKU77078.1| ribonuclease III [Sphingobium yanoikuyae ATCC 51230]
Length = 226
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRA--AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++P V +GP H RF + I G G A +K++A+T AA
Sbjct: 159 KSALQEWAASNKRKPPEYVMTDRSGPHHALRFTVTVSIKGAGEASA-TGGSKQEAETAAA 217
Query: 66 KDFVQYLV 73
K ++ L
Sbjct: 218 KALLEQLA 225
>gi|163783627|ref|ZP_02178616.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
gi|159881120|gb|EDP74635.1| RNase III [Hydrogenivirga sp. 128-5-R1-1]
Length = 222
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK ++ P + V + GP+H + F E I G+ VG G S KK+A+ AA
Sbjct: 154 KTMLQEITQKRWRERPHYRVISVEGPEHAKTFTVESSIKGVSAVGRGKS--KKEAEQEAA 211
Query: 66 KDFVQYLVRSGQ 77
K V+ L +SG+
Sbjct: 212 KRLVEKL-QSGE 222
>gi|300868242|ref|ZP_07112873.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
gi|300333766|emb|CBN58057.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
Length = 328
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 13 EWCQKNSKQ--PEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
EW Q NS P++ + A G H+ +L ++ + G G G ++KK+A+ NAA+D +
Sbjct: 261 EWVQANSDNTPPKYVTIHAGGAPHKPEYLAKVYV-GEKLYGEGKGSSKKEAEKNAAEDAL 319
Query: 70 QYLVRSGQV 78
L + G +
Sbjct: 320 ARLKKRGLI 328
>gi|373498045|ref|ZP_09588560.1| ribonuclease III [Fusobacterium sp. 12_1B]
gi|404367694|ref|ZP_10973056.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|371962085|gb|EHO79694.1| ribonuclease III [Fusobacterium sp. 12_1B]
Length = 235
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+ Q+ K P ++V R GP H++ F E++I G G NKK A+ +AA
Sbjct: 163 KTILQEYSQREYKIIPSYEVIRETGPDHQKIFEIEVKIGD--RTGRGTGKNKKSAEQSAA 220
Query: 66 KDFVQYL 72
K+ + L
Sbjct: 221 KELCKKL 227
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + FLC + I GI Y+GA T KKDA+
Sbjct: 469 GLCKNLLQEYAQKMNYAIPSY-ICTKPASGLAPFLCTVEIGGIQYIGAAART-KKDAEIK 526
Query: 64 AAK 66
AA+
Sbjct: 527 AAR 529
>gi|126697134|ref|YP_001092020.1| ribonuclease III [Prochlorococcus marinus str. MIT 9301]
gi|126544177|gb|ABO18419.1| putative ribonuclease III [Prochlorococcus marinus str. MIT 9301]
Length = 249
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKH--RQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
K L EWCQ K P + + K+ +RF C++ I G+ A ++K+ A+TNA
Sbjct: 177 KTVLQEWCQSKGFDLPVYKIMEVSKKNGDLKRFSCDIFIEGLKESSAFGKSHKQ-AETNA 235
Query: 65 AKDFVQYLVRSGQV 78
A+ ++ + G++
Sbjct: 236 ARVLIEKFITKGKI 249
>gi|387018942|gb|AFJ51589.1| RISC-loading complex subunit TARBP2 [Crotalus adamanteus]
Length = 360
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + LVR
Sbjct: 169 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAA---AKMLVR 223
Query: 75 SGQVNERDVPVENIPMTPTGPSVTVNTSKRFSFI 108
+ N+P+ P S +FS I
Sbjct: 224 ----------IHNVPLDPREGSEAEMEEDQFSII 247
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVR--AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
GL K L E+ QK N P + A+G FLC + I GI Y+GA T KKDA+
Sbjct: 119 GLCKNLLQEYAQKMNYAIPSYICTKPASG---LAPFLCTVEIGGIQYIGAAART-KKDAE 174
Query: 62 TNAAK 66
AA+
Sbjct: 175 IKAAR 179
>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
Length = 240
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V +GP H++ F +R+AG Y G+G +KK+A+ AA+
Sbjct: 180 PEYVVEESGPDHQKTFRATVRVAGQTY-GSGEGRSKKEAEQQAAE 223
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 474 GLCKNLLQEYAQKMNYAIPSY-ICTKSASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 531
Query: 64 AAK 66
AA+
Sbjct: 532 AAR 534
>gi|164508752|emb|CAM07151.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G + LNE+ QK EF+ GP H +RF + G + G KK+A+ N
Sbjct: 6 GNYTSLLNEYQQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPD-GTGKTKKEAKQN 64
Query: 64 AAKDFVQYLVRSGQVNERDVPVENIPMT 91
AAK+ ++ L + PVENI ++
Sbjct: 65 AAKNALEGLKSTHSDEPTPSPVENISIS 92
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 474 GLCKNLLQEYAQKMNYAIPSY-ICTKSASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 531
Query: 64 AAK 66
AA+
Sbjct: 532 AAR 534
>gi|403510495|ref|YP_006642133.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
gi|402803356|gb|AFR10766.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
Length = 267
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V +GP H++ F +R+AG Y G G +KK+A+ AA+
Sbjct: 180 PEYHVDESGPDHQKTFRATVRVAGESY-GLGEGRSKKEAEQQAAE 223
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 117 GLCKNLLQEYAQKMNYAIPSY-ICTKSASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 174
Query: 64 AAK 66
AA+
Sbjct: 175 AAR 177
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 117 GLCKNLLQEYAQKMNYAIPSY-ICTKSASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 174
Query: 64 AAK 66
AA+
Sbjct: 175 AAR 177
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 1703 GLCKNLLQEYAQKMNYAIPSY-ICTKSASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 1760
Query: 64 AAK 66
AA+
Sbjct: 1761 AAR 1763
>gi|357410945|ref|YP_004922681.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
Length = 274
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|36546|emb|CAA45282.1| son-a [Homo sapiens]
Length = 1523
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 1360 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 1418
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 1419 HAKATAATVVLQAM 1432
>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 117 GLCKNLLQEYAQKMNYAIPSY-ICTKSASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 174
Query: 64 AAK 66
AA+
Sbjct: 175 AAR 177
>gi|455651571|gb|EMF30297.1| ribonuclease III [Streptomyces gancidicus BKS 13-15]
Length = 272
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 186 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 229
>gi|16331055|ref|NP_441783.1| ribonuclease III [Synechocystis sp. PCC 6803]
gi|383322797|ref|YP_005383650.1| ribonuclease III [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325966|ref|YP_005386819.1| ribonuclease III [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491850|ref|YP_005409526.1| ribonuclease III [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384437118|ref|YP_005651842.1| ribonuclease III [Synechocystis sp. PCC 6803]
gi|451815212|ref|YP_007451664.1| ribonuclease III [Synechocystis sp. PCC 6803]
gi|2500554|sp|P74368.1|RNC1_SYNY3 RecName: Full=Ribonuclease 3 1; AltName: Full=Ribonuclease III 1;
Short=RNase III 1
gi|1653550|dbj|BAA18463.1| ribonuclease III [Synechocystis sp. PCC 6803]
gi|339274150|dbj|BAK50637.1| ribonuclease III [Synechocystis sp. PCC 6803]
gi|359272116|dbj|BAL29635.1| ribonuclease III [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275286|dbj|BAL32804.1| ribonuclease III [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278456|dbj|BAL35973.1| ribonuclease III [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407961578|dbj|BAM54818.1| ribonuclease III [Bacillus subtilis BEST7613]
gi|451781181|gb|AGF52150.1| ribonuclease III [Synechocystis sp. PCC 6803]
Length = 231
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 7 VKAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
VK+ L +W +KQ PE++ + +GP H Q F +++AG + G G+ +K+ A A
Sbjct: 161 VKSMLQQWALAKTKQLPEYELINTSGPPHAQEFTFTVKVAGKIH-GQGSGPSKQIATKQA 219
Query: 65 AKDFVQYL 72
A + ++ L
Sbjct: 220 ALEALKSL 227
>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 248
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V +GP H++ F +R+AG Y G G +KK+A+ AA+
Sbjct: 180 PEYHVDESGPDHQKTFRATVRVAGESY-GLGEGRSKKEAEQQAAE 223
>gi|345002305|ref|YP_004805159.1| ribonuclease III [Streptomyces sp. SirexAA-E]
gi|344317931|gb|AEN12619.1| ribonuclease III [Streptomyces sp. SirexAA-E]
Length = 274
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 183 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 226
>gi|411120253|ref|ZP_11392629.1| ribonuclease III [Oscillatoriales cyanobacterium JSC-12]
gi|410710409|gb|EKQ67920.1| ribonuclease III [Oscillatoriales cyanobacterium JSC-12]
Length = 225
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ EW Q N ++ P + + +GP H + ++ E+ + G Y G G K+DA+ +AA
Sbjct: 157 KSRFQEWAQANHRENPTYAIAHESGPDHAKTYVTEVFVNGKFY-GRGTGRKKQDAEKDAA 215
Query: 66 KDFVQYL 72
+D + L
Sbjct: 216 RDALDRL 222
>gi|297620496|ref|YP_003708633.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
gi|297375797|gb|ADI37627.1| ribonuclease III [Waddlia chondrophila WSU 86-1044]
Length = 252
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 8 KAFLNEWCQKNSKQPEFD--VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
KA L ++CQK + P V +GP H++ F + I VG G +KK+AQ AA
Sbjct: 176 KAQLQDYCQKKYRHPPLYKVVSESGPDHQKIFTISVLINN-QEVGHGEGPSKKEAQQAAA 234
Query: 66 KD 67
KD
Sbjct: 235 KD 236
>gi|456388603|gb|EMF54043.1| rnc protein [Streptomyces bottropensis ATCC 25435]
Length = 271
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 191 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 234
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 184 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 227
>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
Length = 256
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C + + P + + GP+H Q F +AG+ VG G NKK A+ AA+
Sbjct: 177 KTTLQELCAELKAAMPVYSATSTGPEHDQTFNAVATVAGL-TVGRGTGHNKKLAEQQAAE 235
Query: 67 DFVQYL 72
+ Q L
Sbjct: 236 EACQAL 241
>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 272
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 186 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 229
>gi|440696029|ref|ZP_20878532.1| ribonuclease III [Streptomyces turgidiscabies Car8]
gi|440281787|gb|ELP69332.1| ribonuclease III [Streptomyces turgidiscabies Car8]
Length = 280
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|408529026|emb|CCK27200.1| Ribonuclease 3 [Streptomyces davawensis JCM 4913]
Length = 263
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG+ + G T KK AQ N
Sbjct: 86 GIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKT-KKQAQKN 144
Query: 64 AAK---DFVQYLVRSGQVNERDVPVEN 87
AA ++ L R G+ + P ++
Sbjct: 145 AAMAAWSELKQLPRVGEPSSSSCPPDH 171
>gi|337292610|emb|CCB90626.1| Ribonuclease 3 [Waddlia chondrophila 2032/99]
Length = 243
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 8 KAFLNEWCQKNSKQPEFD--VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
KA L ++CQK + P V +GP H++ F + I VG G +KK+AQ AA
Sbjct: 167 KAQLQDYCQKKYRHPPLYKVVSESGPDHQKIFTISVLINN-QEVGHGEGPSKKEAQQAAA 225
Query: 66 KD 67
KD
Sbjct: 226 KD 227
>gi|449513317|ref|XP_004175519.1| PREDICTED: LOW QUALITY PROTEIN: RISC-loading complex subunit
TARBP2, partial [Taeniopygia guttata]
Length = 215
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +V G+ T+KK A+ NAA + LVR
Sbjct: 73 QKGWRLPEYTVTQESGPAHRKEFTMTCRVE--RFVEIGSGTSKKLAKRNAA---AKMLVR 127
Query: 75 SGQVNERDVPVENIPMTP 92
+ N+PM P
Sbjct: 128 ----------IHNVPMEP 135
>gi|392950932|ref|ZP_10316487.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
gi|391859894|gb|EIT70422.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
Length = 228
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 8 KAFLNEWCQKNSK-QPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L EW Q ++ P ++V + AGP HR++F+ R+ + + S +++ A+ AA
Sbjct: 157 KTRLQEWLQARARPLPIYEVLSEAGPPHRRQFVVRARLLDMEHTAEAFSNSRRSAEQKAA 216
Query: 66 KDFVQYL 72
+ +Q L
Sbjct: 217 ELLLQRL 223
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG+ + G T KK AQ N
Sbjct: 99 GIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKT-KKQAQKN 157
Query: 64 AAK---DFVQYLVRSGQVNERDVPVEN 87
AA ++ L R G+ + P ++
Sbjct: 158 AAMAAWSELKQLPRVGEPSSSSCPPDH 184
>gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase
[Danio rerio]
gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio]
gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 2 SGDGLVKAFLNEWCQKNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDA 60
S G + LNE+ QK EF+ GP H +RF + G + G KK+A
Sbjct: 3 SLSGNYTSLLNEYQQKTQCTVEFEEGPTDGPSHNKRFTMRAIVNGQKFPD-GTGKTKKEA 61
Query: 61 QTNAAKDFVQYLVRSGQVNERDVPVENIPMT 91
+ NAAK+ ++ L + PVENI ++
Sbjct: 62 KQNAAKNALEGLKSTHSDEPTPSPVENISVS 92
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GL K L E+ QK N P ++ + P F C + I GI Y+GA T KK+A+
Sbjct: 100 GLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKT-KKEAEI 158
Query: 63 NAAKDFVQYLVRSG 76
AA+ + + SG
Sbjct: 159 KAARTALLAIQSSG 172
>gi|359148735|ref|ZP_09181842.1| ribonuclease III [Streptomyces sp. S4]
Length = 260
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 187 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 230
>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
Length = 265
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 192 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 235
>gi|441178347|ref|ZP_20970023.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614520|gb|ELQ77785.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 275
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 194 PEYMVSETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 237
>gi|421739406|ref|ZP_16177716.1| ribonuclease III [Streptomyces sp. SM8]
gi|406692179|gb|EKC95890.1| ribonuclease III [Streptomyces sp. SM8]
Length = 260
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 187 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 230
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG+ + G T KK AQ N
Sbjct: 86 GIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKT-KKQAQKN 144
Query: 64 AAK---DFVQYLVRSGQVNERDVPVEN 87
AA ++ L R G+ + P ++
Sbjct: 145 AAMAAWSELKQLPRVGEPSSSSCPPDH 171
>gi|395771774|ref|ZP_10452289.1| ribonuclease III [Streptomyces acidiscabies 84-104]
Length = 263
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 186 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 229
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 197 PEYLVSETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 240
>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
Length = 273
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces griseus XylebKG-1]
gi|411004906|ref|ZP_11381235.1| ribonuclease III [Streptomyces globisporus C-1027]
gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces griseus XylebKG-1]
Length = 274
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|429197323|ref|ZP_19189225.1| ribonuclease III [Streptomyces ipomoeae 91-03]
gi|428666991|gb|EKX66112.1| ribonuclease III [Streptomyces ipomoeae 91-03]
Length = 275
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 186 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 229
>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 274
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 272
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 186 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 229
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 193 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 236
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 200 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 243
>gi|386842771|ref|YP_006247829.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103072|gb|AEY91956.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796063|gb|AGF66112.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 274
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 186 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 229
>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
Length = 277
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
Length = 274
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 190 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 233
>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
Length = 272
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 191 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 234
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ + P + +G H F C + +AGI + G + NKK A+ N
Sbjct: 86 GVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFTCTVELAGITFAG-DPAKNKKQAEKN 144
Query: 64 AAK---DFVQYLVRSGQVNERDVPVENI 88
AA ++ LVR +VN + P ENI
Sbjct: 145 AASAAWSALKQLVRE-EVNSSNEP-ENI 170
>gi|443623856|ref|ZP_21108344.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
gi|443342637|gb|ELS56791.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
Length = 273
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 197 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 240
>gi|365861190|ref|ZP_09400967.1| ribonuclease III [Streptomyces sp. W007]
gi|364009341|gb|EHM30304.1| ribonuclease III [Streptomyces sp. W007]
Length = 238
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 154 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 197
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 186 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 229
>gi|348507383|ref|XP_003441235.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Oreochromis niloticus]
Length = 665
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 9 AFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
A LNE+ QK +F+ V AAGP H + F + + G Y G NKK+A+ NAAK+
Sbjct: 6 ANLNEYAQKQRLVLQFEEVGAAGPDHIKTFTIRVVLNGKAYPD-GVGKNKKEAKQNAAKN 64
Query: 68 FVQYLV-RSGQVNERDVPVEN 87
+ L+ S E V N
Sbjct: 65 ALAGLLEESADTTENAAEVSN 85
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 195 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 238
>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
gi|81719920|sp|Q82JT9.1|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
Length = 276
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 191 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 234
>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
gi|418472126|ref|ZP_13041896.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
gi|384872625|sp|Q9ZBQ7.2|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Antibiotic biosynthesis
protein B; Short=AbsB; AltName: Full=Ribonuclease III;
Short=RNase III
gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
gi|371547286|gb|EHN75676.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
Length = 276
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 201 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 244
>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
Length = 272
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 197 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 240
>gi|431894718|gb|ELK04511.1| Protein SON [Pteropus alecto]
Length = 2343
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2251 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2309
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2310 HAKATAATVVLQAM 2323
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVR--AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
GL K L E+ QK N P + A+G F+C + I GI Y+GA T KKDA+
Sbjct: 119 GLCKNLLQEYAQKMNYAIPSYICTKPASG---LAPFICTVEIGGIQYIGAAART-KKDAE 174
Query: 62 TNAAK 66
AA+
Sbjct: 175 IKAAR 179
>gi|344245382|gb|EGW01486.1| Protein SON [Cricetulus griseus]
Length = 2319
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2227 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2285
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2286 HAKATAATVVLQAM 2299
>gi|329964465|ref|ZP_08301519.1| ribonuclease III [Bacteroides fluxus YIT 12057]
gi|328524865|gb|EGF51917.1| ribonuclease III [Bacteroides fluxus YIT 12057]
Length = 294
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ + + F E+RI GI G G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQLLDEDYNPMFHTEVRIEGIS-AGTGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 R 234
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GL K L E+ QK N P + + GP F C + I GI Y+GA T KK+A+
Sbjct: 93 GLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKT-KKEAEI 151
Query: 63 NAAK 66
AA+
Sbjct: 152 KAAR 155
>gi|427394181|ref|ZP_18887683.1| ribonuclease III [Alloiococcus otitis ATCC 51267]
gi|425730169|gb|EKU93012.1| ribonuclease III [Alloiococcus otitis ATCC 51267]
Length = 235
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 8 KAFLNEWCQKNSK-QPEFDV-RAAGPKHRQRFLCELRIAGIGY-VGAGNSTNKKDAQTNA 64
K L E Q+N + + ++DV GP H + F E++I G Y VG GNS KK AQ A
Sbjct: 163 KTALQELMQENGEVKIDYDVVDTKGPDHNRTFYVEVKIEGDSYGVGQGNS--KKRAQQQA 220
Query: 65 AKDFVQYL 72
AK ++ L
Sbjct: 221 AKKALEQL 228
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 187 PEYLVSEEGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 230
>gi|307718753|ref|YP_003874285.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
6192]
gi|306532478|gb|ADN02012.1| hypothetical protein STHERM_c10670 [Spirochaeta thermophila DSM
6192]
Length = 194
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+ QKN K P + V GP+H + F E++I Y G G NKK+A+ +AA
Sbjct: 124 KTLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKY-GPGEGKNKKEAEQSAA 182
>gi|398782208|ref|ZP_10546026.1| ribonuclease III [Streptomyces auratus AGR0001]
gi|396996945|gb|EJJ07924.1| ribonuclease III [Streptomyces auratus AGR0001]
Length = 253
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 154 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 197
>gi|301170840|dbj|BAJ12034.1| virus interferon resistance [Orf virus]
Length = 183
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 11 LNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+C + EF + RA G H RF C + I+G V A + +KK A+ A +
Sbjct: 114 VNEFCMMTHRPLEFSETRAGGEDHCPRFTCTITISG-KVVAAADGASKKLARHTACSSAL 172
Query: 70 QYLV 73
L+
Sbjct: 173 TILI 176
>gi|212722406|ref|NP_001131481.1| Double-stranded RNA binding motif protein family [Zea mays]
gi|194691644|gb|ACF79906.1| unknown [Zea mays]
gi|195623306|gb|ACG33483.1| double-stranded RNA binding motif family protein [Zea mays]
gi|414885437|tpg|DAA61451.1| TPA: Double-stranded RNA binding motif protein family [Zea mays]
Length = 184
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 20 KQPEFDVRAAGPKHRQRFLCELRIAGIGYVG------AGNSTNKKDAQTNAAKDFVQYLV 73
K+P FD GP H + F C++ + G V + KK A+ NAA+ + L
Sbjct: 104 KEPSFDFEEQGPPHNRIFTCKVTVHLDGLVNTIMECFSDPKPKKKAARENAAQGALWCLE 163
Query: 74 RSGQV-NERDVP 84
RSG V + DVP
Sbjct: 164 RSGYVKSSSDVP 175
>gi|397507175|ref|XP_003846008.1| PREDICTED: LOW QUALITY PROTEIN: protein SON [Pan paniscus]
Length = 2436
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2344 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2402
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2403 HAKATAATVVLQAM 2416
>gi|301768411|ref|XP_002919630.1| PREDICTED: protein SON-like [Ailuropoda melanoleuca]
Length = 2336
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2244 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2302
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2303 HAKATAATVVLQAM 2316
>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
Length = 275
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 199 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 242
>gi|403271818|ref|XP_003927803.1| PREDICTED: protein SON [Saimiri boliviensis boliviensis]
Length = 2419
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2327 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2385
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2386 HAKATAATVVLQAM 2399
>gi|167427274|gb|ABZ80253.1| SON DNA-binding protein isoform F (predicted) [Callithrix jacchus]
Length = 2454
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2362 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2420
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2421 HAKATAATVVLQAM 2434
>gi|119630222|gb|EAX09817.1| SON DNA binding protein, isoform CRA_d [Homo sapiens]
Length = 2482
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2390 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2448
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2449 HAKATAATVVLQAM 2462
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K PE+ +GP H F C + +AG + G T KK AQ N
Sbjct: 86 GIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPMFTCTVELAGRIFTGNPGKT-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|426392883|ref|XP_004062768.1| PREDICTED: protein SON isoform 1 [Gorilla gorilla gorilla]
Length = 2368
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2276 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2334
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2335 HAKATAATVVLQAM 2348
>gi|395849039|ref|XP_003797144.1| PREDICTED: protein SON [Otolemur garnettii]
Length = 2418
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2326 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2384
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2385 HAKATAATVVLQAM 2398
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GL K L E+ QK N P + + GP F C + I GI Y+GA T KK+A+
Sbjct: 100 GLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLFSCTVEIGGIRYIGAVAKT-KKEAEI 158
Query: 63 NAAK 66
AA+
Sbjct: 159 KAAR 162
>gi|386346835|ref|YP_006045084.1| ribonuclease 3 [Spirochaeta thermophila DSM 6578]
gi|339411802|gb|AEJ61367.1| Ribonuclease 3 [Spirochaeta thermophila DSM 6578]
Length = 251
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+ QKN K P + V GP+H + F E++I Y G G NKK+A+ +AA
Sbjct: 181 KTLLQEYVQKNFKTYPRYRVVEKLGPEHNRTFRIEVQIRDKKY-GPGEGKNKKEAEQSAA 239
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 1 MSGDGLVKAFLNEWCQK-NSKQPEFDVRAAGPKHR-QRFLCELRIAGIGYVGAGNSTNKK 58
M GL K L E+ QK N P + + R +F C + I GI Y GA T KK
Sbjct: 3 MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KK 61
Query: 59 DAQTNAAK 66
DA+ +A +
Sbjct: 62 DAEISAGR 69
>gi|301117218|ref|XP_002906337.1| double stranded RNA binding, putative [Phytophthora infestans
T30-4]
gi|262107686|gb|EEY65738.1| double stranded RNA binding, putative [Phytophthora infestans
T30-4]
Length = 371
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 11 LNEWCQKNSKQPEFDVRAAG-PKHRQRFLCELRIAG--IGYVGAGNS 54
LNE QK+ KQ E+ ++ G HR+R++C+L+I G +GY G G S
Sbjct: 98 LNELIQKDKKQVEYLIQDQGETSHRRRYVCKLQIDGKRMGY-GEGVS 143
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GL K L E+ QK N P ++ + P F C + I GI Y+GA T KK+A+
Sbjct: 93 GLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASAKT-KKEAEI 151
Query: 63 NAAKDFVQYLVRSG 76
AA+ + + SG
Sbjct: 152 KAARTALLAIQSSG 165
>gi|357975276|ref|ZP_09139247.1| ribonuclease III [Sphingomonas sp. KC8]
Length = 223
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAA--GPKHRQRFLCELRIAG-IGYVGAGNSTNKKDAQTNA 64
K+ L EW N +P AA GP H RF + + G G + T+K++A+T A
Sbjct: 155 KSALQEWAAANRCRPPVYTMAARSGPHHAPRFTVVVTLPGRTGAEASAEGTSKQEAETAA 214
Query: 65 AKDFVQYL 72
AK ++ L
Sbjct: 215 AKALLEKL 222
>gi|119630227|gb|EAX09822.1| SON DNA binding protein, isoform CRA_h [Homo sapiens]
Length = 2459
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2367 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2425
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2426 HAKATAATVVLQAM 2439
>gi|242014081|ref|XP_002427726.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212512167|gb|EEB14988.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 865
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 9 AFLNEWCQKNSK-QPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
+ LNE C + P+F++ GP H++ FL ++ + G+ Y S NKK A+ AA
Sbjct: 793 SLLNELCSRRKYGTPQFELCFECGPDHKKNFLFKVIVNGVEYTPTIASPNKKQAKVEAA 851
>gi|390478200|ref|XP_002807816.2| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100390479
[Callithrix jacchus]
Length = 2365
Score = 36.6 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2273 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2331
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2332 HAKATAATVVLQAM 2345
>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 236
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 8 KAFLNEWCQKNSKQP-EFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E Q+N +Q + V GP H + F+ E++I G+ G G +KK+A+ NAA
Sbjct: 168 KTQLQELVQQNGEQQISYSVTDQFGPDHNKTFVTEVKINGVTQ-GQGKGHSKKEAEQNAA 226
Query: 66 KD 67
KD
Sbjct: 227 KD 228
>gi|350567556|ref|ZP_08935966.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
gi|348662627|gb|EGY79284.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
Length = 259
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 8 KAFLNEWC-QKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E+C ++ + P +D+ +GP H +R+ + G + A NKK+A+ AA+
Sbjct: 188 KTVLQEYCAEQGFEAPRYDIVGSGPDHNRRYCARAEVDGKLHA-AYTGHNKKEAEQGAAQ 246
Query: 67 DFVQYLV 73
V L+
Sbjct: 247 LAVAALI 253
>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
Length = 286
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 204 PEYLVTEEGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 247
>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
Length = 275
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 193 PEYLVTEEGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 236
>gi|449266107|gb|EMC77217.1| RISC-loading complex subunit TARBP2, partial [Columba livia]
Length = 283
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 7 VKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
V A QK + PE+ V + +GP HR+ F R+ +V G+ T+KK A+ +AA
Sbjct: 118 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVE--RFVEIGSGTSKKLAKRDAA 175
Query: 66 KDFVQYLVRSGQVNERDVPVENIPMTPTGPSVTVNTSKRFSFI 108
+ LVR + N+PM P S ++F +
Sbjct: 176 ---AKMLVR----------IHNVPMEPRDGSEAEGDEEQFCMV 205
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 469 GLCKNLLQEYAQKMNYAIPSY-ICTKPASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 526
Query: 64 AAK 66
AA+
Sbjct: 527 AAR 529
>gi|296491682|tpg|DAA33715.1| TPA: SON DNA-binding protein [Bos taurus]
Length = 2136
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2044 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2102
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2103 HAKATAATVVLQAM 2116
>gi|139948494|ref|NP_001077163.1| protein SON [Bos taurus]
gi|61966462|emb|CAG47115.1| SON DNA-binding protein [Bos taurus]
Length = 2136
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2044 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2102
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2103 HAKATAATVVLQAM 2116
>gi|428180344|gb|EKX49212.1| hypothetical protein GUITHDRAFT_105286 [Guillardia theta CCMP2712]
Length = 336
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 8 KAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L C +NS + P F AGP H +F C + I + G+ T KK A+ A+K
Sbjct: 83 KGNLINLCTRNSLEMPVFKTTRAGPDHEPQFSCTVTIGQQTFYGSQQPT-KKLAEKEASK 141
Query: 67 DFVQYL-------VRSGQVNERDVPVENIPMTPTGP 95
V+ L VRS VN R V T T P
Sbjct: 142 QAVEGLFEAGSGIVRSPLVNSRLVEESAKSQTQTCP 177
>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
Length = 314
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 232 PEYLVTEEGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 275
>gi|17046373|gb|AAL34497.1|AF380179_1 SON DNA binding protein isoform A [Homo sapiens]
Length = 2140
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2048 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2106
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2107 HAKATAATVVLQAM 2120
>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
Length = 280
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 216 PEYLVTEEGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 259
>gi|345851640|ref|ZP_08804609.1| putative glycosyl hydrolase [Streptomyces zinciresistens K42]
gi|345636912|gb|EGX58450.1| putative glycosyl hydrolase [Streptomyces zinciresistens K42]
Length = 629
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 48 YVGAGNSTNKKDAQTNAAKDFVQYLVRS----GQ--VNERDVPVENIPMTPTG-PSVTVN 100
++ GNS N +T DF YLV++ GQ +N D+ V+N P PT PS+ +
Sbjct: 186 WMKTGNSLNGGSLRTENYGDFADYLVKAIKAYGQEGINLSDLTVQNEPENPTSYPSMAMT 245
Query: 101 TSKRFSFI-----RRSSIGLP 116
+++ F+ R ++ GLP
Sbjct: 246 PAQQADFVRILDQRLAAAGLP 266
>gi|297287594|ref|XP_001093086.2| PREDICTED: protein SON-like [Macaca mulatta]
Length = 2140
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A + E C K QP EF V +GP HR+ FL + I G Y + S NKK
Sbjct: 2048 LSGKHPVSALM-EICNKRRWQPPEFLLVHDSGPDHRKHFLFRVLINGSAYQPSFASPNKK 2106
Query: 59 DAQTNAAKDFVQYL 72
A+ AA +Q +
Sbjct: 2107 HAKATAATVVLQAM 2120
>gi|270294929|ref|ZP_06201130.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317477924|ref|ZP_07937108.1| ribonuclease III [Bacteroides sp. 4_1_36]
gi|270274176|gb|EFA20037.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316905940|gb|EFV27710.1| ribonuclease III [Bacteroides sp. 4_1_36]
Length = 309
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ + ++ F E+RI GI G G +KK++Q NAA
Sbjct: 192 KSKLIEWSQKNKMEVSFELIEQFLDEEYNPMFHTEVRIEGIS-AGTGTGYSKKESQQNAA 250
Query: 66 K 66
+
Sbjct: 251 Q 251
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
GL K L E+ QK N P + +A+GP F+C + I GI Y+GA T KK A+
Sbjct: 91 GLCKNLLQEYAQKMNYAIPSYICTKQASGP-----FICSVEIGGILYIGAAART-KKGAE 144
Query: 62 TNAAK 66
AA+
Sbjct: 145 IKAAR 149
>gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1]
Length = 229
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L E+CQKN K+ +++ + GP+H + F+ + I G G +N+K+++ AA
Sbjct: 160 KSTLQEFCQKNGKELKYELIEEKGPEHNKIFVSDALIDGQA-TARGEGSNRKNSEQMAA 217
>gi|390364358|ref|XP_797285.3| PREDICTED: uncharacterized protein LOC592681 [Strongylocentrotus
purpuratus]
Length = 1573
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQKNS-KQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+SG V A LNE C K +P F+V R GP H++ F+ ++ I Y+ S NKK
Sbjct: 1496 LSGKHPVMA-LNELCNKRRWGKPNFEVVREDGPPHKKNFVFKVCIRNDEYIPTVCSGNKK 1554
Query: 59 DAQTNAAKDFVQYL 72
DA+ AA +Q +
Sbjct: 1555 DAKAMAATVALQKM 1568
>gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae]
gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae]
Length = 871
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 10 FLNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
LNE KN P + +R GP H + FL + I G Y NKK+A+ NAAK
Sbjct: 801 VLNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGCNNKKEAKLNAAK 859
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ + P + +G H F C + +AGI + G ++ NKK A+ N
Sbjct: 86 GVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DHAKNKKQAEKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|325073735|gb|ADY76788.1| PP120 [Orf virus]
Length = 183
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 11 LNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+C + EF + R+ G H RF C + I+G V A N +KK A+ A +
Sbjct: 114 VNEFCMMTHRPLEFCETRSGGEDHCPRFTCTITISG-KVVAAANGASKKLARHAACASAL 172
Query: 70 QYLV 73
L+
Sbjct: 173 TILI 176
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 11 LNEWCQKNSKQPE-FDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
L + ++ K+P + V + G H+ +F C + + G + AG+ KK+A+ +AA+ +
Sbjct: 52 LQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDAAR--I 109
Query: 70 QYLVRSGQVNERDV 83
Y + S V E D+
Sbjct: 110 AYEILSA-VGEDDI 122
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ + P + +G H F C + +AGI + G + NKK A+ N
Sbjct: 86 GVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKN 144
Query: 64 AAK---DFVQYLVRSGQVNERDVPVEN 87
AA ++ LVR +VN + P N
Sbjct: 145 AASAAWSALKQLVRE-EVNSSNEPENN 170
>gi|160888577|ref|ZP_02069580.1| hypothetical protein BACUNI_00994 [Bacteroides uniformis ATCC 8492]
gi|156861891|gb|EDO55322.1| ribonuclease III [Bacteroides uniformis ATCC 8492]
Length = 306
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ + ++ F E+RI GI G G +KK++Q NAA
Sbjct: 189 KSKLIEWSQKNKMEVSFELIEQFLDEEYNPMFHTEVRIEGIS-AGTGTGYSKKESQQNAA 247
Query: 66 K 66
+
Sbjct: 248 Q 248
>gi|423304254|ref|ZP_17282253.1| ribonuclease 3 [Bacteroides uniformis CL03T00C23]
gi|423310632|ref|ZP_17288616.1| ribonuclease 3 [Bacteroides uniformis CL03T12C37]
gi|392681803|gb|EIY75160.1| ribonuclease 3 [Bacteroides uniformis CL03T12C37]
gi|392684840|gb|EIY78160.1| ribonuclease 3 [Bacteroides uniformis CL03T00C23]
Length = 292
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ + ++ F E+RI GI G G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQFLDEEYNPMFHTEVRIEGIS-AGTGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|188995567|ref|YP_001929819.1| ribonuclease III [Porphyromonas gingivalis ATCC 33277]
gi|419970023|ref|ZP_14485538.1| ribonuclease III [Porphyromonas gingivalis W50]
gi|188595247|dbj|BAG34222.1| putative ribonuclease III [Porphyromonas gingivalis ATCC 33277]
gi|392611793|gb|EIW94520.1| ribonuclease III [Porphyromonas gingivalis W50]
Length = 261
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K+ L EW QK+ EF + + + F + + G +G+G NKK+A NAA D
Sbjct: 179 KSLLLEWAQKHHLNLEFRLISEPKRAHGHFNYAVFVDG-HRIGSGIGMNKKEAHQNAAHD 237
Query: 68 FVQYLVRS 75
++ L R+
Sbjct: 238 ALEKLKRA 245
>gi|82582935|gb|ABB84393.1| interferon resistance protein, partial [Orf virus]
Length = 166
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 11 LNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+C + EF + RA G H RF C + I+G V + +KK A+ NA +
Sbjct: 97 VNEFCMMTHRPLEFSETRAGGEDHCPRFTCTITISG-KVVTVADGASKKLARHNACASAL 155
Query: 70 QYLV 73
L+
Sbjct: 156 TILI 159
>gi|78780081|ref|YP_398193.1| RNAse III [Prochlorococcus marinus str. MIT 9312]
gi|78713580|gb|ABB50757.1| RNAse III [Prochlorococcus marinus str. MIT 9312]
Length = 249
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHR--QRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
K L EWCQ K P + + K+ +RF C++ + G+ A ++K+ A+TNA
Sbjct: 177 KTVLQEWCQSKGFDLPVYKIIEVSKKNGDPKRFSCDIFVEGLKESSAFGKSHKQ-AETNA 235
Query: 65 AKDFVQYLVRSGQV 78
AK ++ + G++
Sbjct: 236 AKVLIEKFITIGKI 249
>gi|345494516|ref|XP_001601978.2| PREDICTED: hypothetical protein LOC100117848 isoform 1 [Nasonia
vitripennis]
Length = 930
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 9 AFLNEWCQKNS-KQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ L E+C K P +++ GP H++ FL ++++ G+ Y A S NKK A+ AA+
Sbjct: 861 SLLGEYCSKRKFGAPVYELCFECGPDHKKNFLFKVKVNGVEYKPAVASPNKKLAKAEAAQ 920
Query: 67 DFVQYL 72
+Q +
Sbjct: 921 VCLQSI 926
>gi|403386857|ref|ZP_10928914.1| ribonuclease III [Clostridium sp. JC122]
Length = 233
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 8 KAFLNEWCQKNSKQPEFD--VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QKN + V+ GP HR++F E+ + G+ G G +KK+A+ NAA
Sbjct: 163 KTKLQETLQKNGEVSIVYNLVKFEGPPHRRQFFVEVLVNGVSR-GNGIGYSKKEAEQNAA 221
Query: 66 KDFV 69
K+ V
Sbjct: 222 KEVV 225
>gi|34541386|ref|NP_905865.1| ribonuclease III [Porphyromonas gingivalis W83]
gi|334147160|ref|YP_004510089.1| ribonuclease III [Porphyromonas gingivalis TDC60]
gi|34397703|gb|AAQ66764.1| ribonuclease III [Porphyromonas gingivalis W83]
gi|333804316|dbj|BAK25523.1| ribonuclease III [Porphyromonas gingivalis TDC60]
Length = 237
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K+ L EW QK+ EF + + + F + + G +G+G NKK+A NAA D
Sbjct: 155 KSLLLEWAQKHHLNLEFRLISEPKRAHGHFNYAVFVDG-HRIGSGIGMNKKEAHQNAAHD 213
Query: 68 FVQYLVRS 75
++ L R+
Sbjct: 214 ALEKLKRA 221
>gi|453053100|gb|EMF00570.1| ribonuclease III [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 275
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 154 PEYLVTETGPDHEKTFTAAARVGGVEY-GTGTGRSKKEAEQQAAE 197
>gi|449541140|gb|EMD32126.1| hypothetical protein CERSUDRAFT_88396 [Ceriporiopsis
subvermispora B]
Length = 75
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K LN CQ + +D++ GP+H+Q + + I G+ G G ++K+ AQ +A++
Sbjct: 7 KMELNNLCQTTGARETWDLQVVGPEHQQVWYATVYINGVQ-CGYGTGSSKRAAQESASQQ 65
Query: 68 FVQYLV 73
L
Sbjct: 66 AYHTLT 71
>gi|385810564|ref|YP_005846960.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
gi|383802612|gb|AFH49692.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
Length = 258
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 2 SGDGLV----KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNST 55
+G+ LV K+ L E+ Q N + P + V + GP+H + F ++ + G +G G
Sbjct: 179 AGEHLVDENYKSQLLEYAQANKLELPNYKVIKEEGPQHERIFTVQVSV-GDKIIGIGKGK 237
Query: 56 NKKDAQTNAAKDFVQYLVRS 75
NKK A+ NAA+ ++ +++S
Sbjct: 238 NKKSAEQNAAQKAMEKILKS 257
>gi|255638997|gb|ACU19799.1| unknown [Glycine max]
Length = 168
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 1 MSGDGLVKAFLNEWCQKNS-KQPEFDV-RAAGPKHRQRFLCELRIA-------GIGYVGA 51
+SG G ++ L E C K P F+ +A GP H ++F C++ + + +VG
Sbjct: 78 LSGTGTARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGE 137
Query: 52 GNSTNKKDAQTNAAKDFVQYLVRSGQVNER 81
S KKDA +AA+ YL G + R
Sbjct: 138 PLS-KKKDAAESAAEGAFWYLQHEGYLPSR 166
>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
Length = 256
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C + + P + + GP+H Q F +AG+ VG G NKK A+ AA+
Sbjct: 177 KTTLQELCAELKAPMPVYSATSTGPEHDQTFNAVATVAGL-TVGNGVGHNKKLAEQQAAQ 235
Query: 67 DFVQYL 72
+ Q L
Sbjct: 236 EACQTL 241
>gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni]
gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni]
Length = 845
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 10 FLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
LNE KN P V + GP H + FL + I G Y + +KK+A+ NAAK
Sbjct: 775 VLNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQKYTPSNGCNSKKEAKLNAAKL 834
Query: 68 FVQYL 72
+Q L
Sbjct: 835 CLQAL 839
>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
Length = 256
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C + + P + + GP+H Q F +AG+ VG G NKK A+ AA+
Sbjct: 177 KTTLQELCAELKAPMPVYSATSTGPEHDQTFNAVATVAGL-TVGNGVGHNKKLAEQQAAQ 235
Query: 67 DFVQYL 72
+ Q L
Sbjct: 236 EACQTL 241
>gi|327263959|ref|XP_003216784.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Anolis
carolinensis]
Length = 383
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 16/78 (20%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + LVR
Sbjct: 190 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAA---AKMLVR 244
Query: 75 SGQVNERDVPVENIPMTP 92
+ N+P+ P
Sbjct: 245 ----------IHNVPLDP 252
>gi|82582925|gb|ABB84388.1| interferon resistance protein, partial [Orf virus]
gi|82582927|gb|ABB84389.1| interferon resistance protein, partial [Orf virus]
Length = 166
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 11 LNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+C + EF + R+ G H RF C + I+G V A N +KK A+ A +
Sbjct: 97 VNEFCMMTHRPLEFCETRSGGEDHCPRFTCTITISG-KVVAAANGASKKLARHAACASAL 155
Query: 70 QYLV 73
L+
Sbjct: 156 TILI 159
>gi|82582943|gb|ABB84397.1| interferon resistance protein, partial [Orf virus]
Length = 166
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 11 LNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+C + EF + R+ G H RF C + I+G V A N +KK A+ A +
Sbjct: 97 VNEFCMMTHRPLEFCETRSGGEDHCPRFTCTITISG-KVVAAANGASKKLARHAACASAL 155
Query: 70 QYLV 73
L+
Sbjct: 156 TILI 159
>gi|198423460|ref|XP_002126266.1| PREDICTED: similar to SON DNA-binding protein [Ciona intestinalis]
Length = 140
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKD 59
+SG V A + ++ QP F V +GP H++ F+ ++ I G Y + S NKK
Sbjct: 61 LSGKHPVSALMEICSKRKWSQPNFQLVHNSGPDHQRFFMFKVTINGQEYQPSTPSVNKKL 120
Query: 60 AQTNAAKDFVQ 70
A+ N+A +Q
Sbjct: 121 AKANSASVALQ 131
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 4 DGLVKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GL K L E+ QK+ P++ G +H F + IAG+ Y G G + +KK+A+
Sbjct: 81 SGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFSSTVEIAGVSYSG-GCAKSKKEAEI 139
Query: 63 NAAK 66
AA+
Sbjct: 140 KAAR 143
>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
Length = 230
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 8 KAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E + S P + V AAGP H +RF +R+ + G G+S KK A+ AA
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRVGDVVTTGTGSS--KKQAEMAAA 219
>gi|449459642|ref|XP_004147555.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 338
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 15 CQKNSKQPEFDV-RAAGPKHRQRFLCELRIA---GIGYVGAGNSTNKKDAQTNAAKDFVQ 70
C++ ++P + V + GP H + F+C ++IA G Y+ + KDA+ +AA ++
Sbjct: 271 CKRKWQKPNYSVEKDLGPSHERIFVCSVKIATCYGTFYIVGDEKSRVKDAENSAASLMIR 330
Query: 71 YL 72
L
Sbjct: 331 AL 332
>gi|82582941|gb|ABB84396.1| interferon resistance protein, partial [Orf virus]
Length = 166
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 11 LNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+C + EF + R+ G H RF C + I+G V A N +KK A+ A +
Sbjct: 97 VNEFCMMTHRPLEFCETRSGGEDHCPRFTCTITISG-KVVAAANGASKKLARHAACASAL 155
Query: 70 QYLV 73
L+
Sbjct: 156 TILI 159
>gi|124004144|ref|ZP_01688990.1| ribonuclease III [Microscilla marina ATCC 23134]
gi|123990214|gb|EAY29713.1| ribonuclease III [Microscilla marina ATCC 23134]
Length = 248
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ + EW QKN++ +F+ VR G KH+++F+ ++ I V G+ +KK A+ AA+
Sbjct: 178 KSIIIEWAQKNNRDLKFEIVREEGSKHQRQFIAQV-IIDDEPVAKGSGFSKKKAEQAAAE 236
>gi|225873636|ref|YP_002755095.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196]
gi|225793249|gb|ACO33339.1| ribonuclease III [Acidobacterium capsulatum ATCC 51196]
Length = 302
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 8 KAFLNEWCQKNSK-QPEFDVRA-AGPKHRQRFLCELRIAGIG-----YVGAGNSTNKKDA 60
K+ L E+ Q + QPE+ V +GP H +RFL E+R+ G + G KK A
Sbjct: 210 KSALQEFLQSEHRGQPEYVVTGQSGPDHHKRFLVEVRLPGKAGAPGTALARGIGGTKKHA 269
Query: 61 QTNAAKDFVQYL 72
+ AA+ ++ L
Sbjct: 270 EQEAARRALRKL 281
>gi|198415842|ref|XP_002129369.1| PREDICTED: similar to TAR (HIV) RNA binding protein 2 [Ciona
intestinalis]
Length = 326
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 11 LNEWCQKNSKQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
L E+CQK SK P++D+ A G H+ +F+ + + G G S KK A+ AA+ +
Sbjct: 26 LQEYCQKLSKTPQYDLTALEGRAHQPQFVYRCMVGDVTATGQGGS--KKIAKHAAAEAVL 83
Query: 70 QYLVRSGQVNERDVP 84
+ L +G V P
Sbjct: 84 KTLT-NGLVEPESFP 97
>gi|452819315|gb|EME26377.1| ribonuclease III [Galdieria sulphuraria]
Length = 720
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L E+ +KQ E+ ++ GP H++ F+ + + VG G +KK+AQ AAK
Sbjct: 227 KSLLQEYVNSQNKQVEYVEKSCKGPSHQREFIYHAVVDQV-IVGQGKGESKKEAQQKAAK 285
Query: 67 DFVQYLVRSGQVNERDVPVEN 87
+ L R G +++ D +++
Sbjct: 286 E---ALARLGVLSKEDECIQS 303
>gi|3334381|sp|Q91836.1|PRKAB_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog B; AltName:
Full=Double-stranded RNA-binding protein A; AltName:
Full=XlRBPA
gi|214739|gb|AAA49947.1| RNA binding protein [Xenopus laevis]
Length = 298
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP H++ F R+ +V G+ T+K+ A+ AA+ + L +
Sbjct: 123 QKGWRLPEYTVAQESGPPHKREFTITCRVE--TFVETGSGTSKQVAKRVAAE---KLLTK 177
Query: 75 SGQVNERDVPVENI---PMTPTGPSVTVNTSKRFSFIRRSSIGLPRS 118
++ ++P+ + M T S+ ++ ++ S ++RS + +P +
Sbjct: 178 FKTISTDNIPLNKLIGNKMGCTWDSMRNSSGEKISMLKRSPLSIPNT 224
>gi|449526603|ref|XP_004170303.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like protein 2-like
[Cucumis sativus]
Length = 338
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 15 CQKNSKQPEFDV-RAAGPKHRQRFLCELRIA---GIGYVGAGNSTNKKDAQTNAAKDFVQ 70
C++ ++P + V + GP H + F+C ++IA G Y+ + KDA+ +AA ++
Sbjct: 271 CKRKWQKPNYSVEKDLGPSHERIFVCSVKIATCYGTFYIVGDEKSRVKDAENSAASLMIR 330
Query: 71 YL 72
L
Sbjct: 331 AL 332
>gi|358445257|ref|ZP_09155867.1| ribonuclease III [Corynebacterium casei UCMA 3821]
gi|356608703|emb|CCE54110.1| ribonuclease III [Corynebacterium casei UCMA 3821]
Length = 244
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 8 KAFLNEWC-QKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C ++ PE+ + GP+H Q F ++ + G +G G NKK A+ +AA+
Sbjct: 177 KTTLQELCAERKMPMPEYTATSTGPEHDQLFSAQVFVEG-QLLGEGMGPNKKQAEQHAAE 235
>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
Length = 246
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
P +D+ GP H + F E+RI G Y G G+ +KK+A+ AA++
Sbjct: 186 PFYDLSERGPDHEKVFTAEVRIGGRVY-GTGSGHSKKEAEQRAAQE 230
>gi|3021544|emb|CAA10952.1| OV20.0L [Orf virus]
Length = 183
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 11 LNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+C + EF + R+ G H RF C + I+G V A + +KK A+ A +
Sbjct: 114 VNEFCMMTRRSLEFCETRSGGEDHCPRFTCTITISG-KVVAAADGASKKLARHTACSSAL 172
Query: 70 QYLV 73
L+
Sbjct: 173 TILI 176
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ + P + +G H F C + +AGI + G ++ NKK A+ N
Sbjct: 86 GVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPVFTCTVELAGITFTG-DHAKNKKQAEKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|340617582|ref|YP_004736035.1| ribonuclease III [Zobellia galactanivorans]
gi|339732379|emb|CAZ95647.1| Ribonuclease III [Zobellia galactanivorans]
Length = 245
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 8 KAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ + EWCQK K +FDV G + F +L IA V +T+KK A+ A+K
Sbjct: 174 KSLIIEWCQKQKKSFDFDVYEDTGNDTLKHFAVKLTIAD-NVVAKARATSKKKAEERASK 232
>gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
Length = 232
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 1 MSGDGLVKAFLNEWCQ-KNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKK 58
+ G G K L E+ Q K K PE+ + R GP H + F +R Y G G +KK
Sbjct: 158 IEGTGDYKTILQEFVQGKYKKMPEYKLLRTKGPDHNKVFEICVRWNDKIY-GIGTGKSKK 216
Query: 59 DAQTNAAKDFVQYL 72
+A+ +AAK+ ++ L
Sbjct: 217 EAEKHAAKEALEKL 230
>gi|148234413|ref|NP_001079500.1| protein kinase, interferon-inducible double stranded RNA dependent
activator [Xenopus laevis]
gi|82176774|sp|Q7ZYA5.1|PRKAA_XENLA RecName: Full=Interferon-inducible double stranded RNA-dependent
protein kinase activator A homolog A
gi|27696370|gb|AAH43873.1| Rbpa protein [Xenopus laevis]
Length = 309
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP H++ F R+ +V G+ T+K+ A+ AA+ + L +
Sbjct: 134 QKGWRLPEYTVAQESGPPHKREFTITCRVE--TFVETGSGTSKQVAKRVAAE---KLLTK 188
Query: 75 SGQVNERDVPVENI---PMTPTGPSVTVNTSKRFSFIRRSSIGLPRS 118
++ ++P+ + M T S+ ++ ++ S ++RS + +P +
Sbjct: 189 FKTISTDNIPLNKLIGNKMGCTWDSMRNSSGEKISMLKRSPLSIPNT 235
>gi|333995527|ref|YP_004528140.1| ribonuclease III [Treponema azotonutricium ZAS-9]
gi|333737229|gb|AEF83178.1| ribonuclease III [Treponema azotonutricium ZAS-9]
Length = 228
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQK-NSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L E CQ+ P + + + +GP H + F E+ ++ I Y G G NKK A+ AA
Sbjct: 157 KSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVSDIAY-GPGTGRNKKTAEQEAA 215
Query: 66 K 66
K
Sbjct: 216 K 216
>gi|24645429|ref|NP_649914.1| CG8273, isoform A [Drosophila melanogaster]
gi|442618276|ref|NP_001262426.1| CG8273, isoform B [Drosophila melanogaster]
gi|7299212|gb|AAF54409.1| CG8273, isoform A [Drosophila melanogaster]
gi|440217260|gb|AGB95808.1| CG8273, isoform B [Drosophila melanogaster]
Length = 874
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 10 FLNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
LNE KN P++ +R GP H + FL + I G + S NKK+A+ NAA
Sbjct: 804 VLNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAA 861
>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
Length = 256
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E C + + P + + GP+H Q F +AG+ VG G NKK A+ AA+
Sbjct: 177 KTNLQELCAELKAPMPVYTATSTGPEHDQTFTAVATVAGL-TVGNGVGHNKKLAEQQAAQ 235
Query: 67 DFVQYL 72
+ Q L
Sbjct: 236 EACQTL 241
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + P + AGP H F C + IAG+ + G T KK AQ N
Sbjct: 86 GVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFYCTVEIAGMHFTGDPART-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|376261061|ref|YP_005147781.1| ribonuclease III [Clostridium sp. BNL1100]
gi|373945055|gb|AEY65976.1| ribonuclease III [Clostridium sp. BNL1100]
Length = 236
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 8 KAFLNEWCQKNSKQP-EFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E Q+N +Q + V GP H + F+ E++I G G G +KK+A+ NAA
Sbjct: 168 KTQLQELVQQNGEQQISYSVTDQFGPDHNKTFITEVKING-ATQGQGKGHSKKEAEQNAA 226
Query: 66 KD 67
KD
Sbjct: 227 KD 228
>gi|319900438|ref|YP_004160166.1| RNAse III [Bacteroides helcogenes P 36-108]
gi|319415469|gb|ADV42580.1| RNAse III [Bacteroides helcogenes P 36-108]
Length = 290
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ + + F E+RI G+ G G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIKQLLDKDYNPMFHTEIRIEGVS-AGTGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|354491534|ref|XP_003507910.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like, partial [Cricetulus griseus]
Length = 452
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 9 AFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDF 68
+N + QK + ++ + + QRF C+ +I G+ G G+ K++A+ +AAKD
Sbjct: 96 GLVNSYAQKENLSVNYEQCTSNTQSPQRFCCKCKI-GLKTYGIGSGATKQEAKQSAAKDA 154
Query: 69 VQYLVRSGQVNERDVP 84
Q L + + VP
Sbjct: 155 YQKLSEKSSMVQSCVP 170
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG + G+ T KK AQ N
Sbjct: 86 GIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPTFTCTVELAGRIFTGSPGKT-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|21430030|gb|AAM50693.1| GM01981p [Drosophila melanogaster]
Length = 489
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 11 LNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
LNE KN P++ +R GP H + FL + I G + S NKK+A+ NAA
Sbjct: 420 LNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAA 476
>gi|25009833|gb|AAN71087.1| AT18855p [Drosophila melanogaster]
Length = 886
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 10 FLNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
LNE KN P++ +R GP H + FL + I G + S NKK+A+ NAA
Sbjct: 816 VLNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEINGQTFTPDRGSNNKKEAKLNAA 873
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ + P + +G H F C + +AGI + G + NKK A+ N
Sbjct: 86 GVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|317418804|emb|CBN80842.1| RISC-loading complex subunit tarbp2 [Dicentrarchus labrax]
Length = 345
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + +
Sbjct: 151 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSG--TSKKLAKRNAAAKMLSRI-- 206
Query: 75 SGQVNERDVPVE 86
DVPV+
Sbjct: 207 ------HDVPVD 212
>gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis]
gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis]
Length = 851
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 10 FLNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
LNE KN P++ +R +GP H + F + I G Y A +KK+A+ NAAK
Sbjct: 781 VLNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLNAAKL 840
Query: 68 FVQYL 72
++ L
Sbjct: 841 CLRAL 845
>gi|353237404|emb|CCA69378.1| hypothetical protein PIIN_03278 [Piriformospora indica DSM 11827]
Length = 152
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 24 FDVRAAGPKHRQRFLCELRI---AGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQV 78
+ + GP H ++++ + G +G N+TNKKDA+ AA VQYL G V
Sbjct: 95 YSEESIGPSHAEQWIGRFTMNTMTGFIMIGLANATNKKDAKELAAAIAVQYLNNMGYV 152
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ + P + +G H F C + +AGI + G ++ NKK A+ N
Sbjct: 86 GVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGIIFTG-DHAKNKKQAEKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain-containing protein
[Marinithermus hydrothermalis DSM 14884]
gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus
hydrothermalis DSM 14884]
Length = 158
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L +C+ K PEFD R GP+H F+ ++ + G V G K++A+ AA+
Sbjct: 5 KSALIAYCRTKGLAGPEFDTRGTGPEHDPLFISDVMVNGT-VVATGQGRTKREAERIAAE 63
>gi|167771632|ref|ZP_02443685.1| hypothetical protein ANACOL_03004 [Anaerotruncus colihominis DSM
17241]
gi|167666272|gb|EDS10402.1| ribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 232
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 8 KAFLNEWCQKNSKQ--PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QKN ++ V +GP H ++FL E+R+ +G G +KK A+ AA
Sbjct: 165 KTMLQEIIQKNPEERLSYVLVNESGPDHNKKFLVEVRLNS-NVIGVGCGGSKKSAEQAAA 223
Query: 66 KDFVQYLVR 74
++ ++ + R
Sbjct: 224 REALKLMGR 232
>gi|291238580|ref|XP_002739212.1| PREDICTED: Probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Saccoglossus kowalevskii]
Length = 315
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 4 DGLVK------AFLNEWCQKNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTN 56
DG +K + L E C K S P +D+ A G H+ +F+ R+ + G+ T+
Sbjct: 2 DGPIKPMKTPISILQELCTKRSLTPIYDLIACEGAAHQPKFV--YRVTVGEHTANGDGTS 59
Query: 57 KKDAQTNAAKDFV-QYLVR--------------SGQVNERDVPVENIPMTPTG---PSVT 98
KK A+ NAA++ + Q+ V S + + V + IP P G V
Sbjct: 60 KKQAKHNAAENVLEQFNVSVPKPSTPSQDASNGSTEADGNSVYNDGIPGNPVGQLQELVV 119
Query: 99 VNTSKRFSFIRRSSIGLPRSYE 120
+R +I+ S G P S E
Sbjct: 120 ARHWRRPDYIQISECGPPHSRE 141
>gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
Length = 252
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
P + A GP+H Q F E+ I G+ G G NKK A+ N+A++ +L
Sbjct: 191 PVYTATAKGPEHEQIFTAEVAIDGV-RRGVGRGQNKKTAEQNSAREAFFFL 240
>gi|409182784|gb|AFV27009.1| double-stranded RNA-dependent protein kinase [Ctenopharyngodon
idella]
Length = 688
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 9 AFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGY-VGAGNSTN--KKDAQTNA 64
A+LN++CQKN +F V GP H F+ ++ I G Y G G S+ K+ A +A
Sbjct: 217 AYLNDFCQKNKSVLDFKLVERRGPPHNPEFVYKVVIDGKEYPEGQGKSSKEAKQHAAQHA 276
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
+ + R+ Q +E D + +
Sbjct: 277 WSEIRDQIGRTTQSSEDDTSSQTL 300
>gi|348528752|ref|XP_003451880.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Oreochromis
niloticus]
Length = 345
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + +
Sbjct: 151 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSG--TSKKLAKRNAAAKMLSRI-- 206
Query: 75 SGQVNERDVPVE 86
DVPV+
Sbjct: 207 ------HDVPVD 212
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + P + +GP H F C + IAG+ + G T KK AQ N
Sbjct: 86 GVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKT-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG+ + G T KK AQ N
Sbjct: 86 GVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFSCTVELAGMSFTGEPART-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|402857890|ref|XP_003893470.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase A,
partial [Papio anubis]
Length = 1202
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 98 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 157
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 158 CALSLVRQLYHLGVV 172
>gi|432857632|ref|XP_004068726.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Oryzias
latipes]
Length = 345
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + +
Sbjct: 151 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSG--TSKKLAKRNAAAKMLSRI-- 206
Query: 75 SGQVNERDVPVE 86
DVPV+
Sbjct: 207 ------HDVPVD 212
>gi|432089382|gb|ELK23333.1| ATP-dependent RNA helicase A [Myotis davidii]
Length = 1163
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCEL----RIAGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ ++ G + +NKK A +
Sbjct: 73 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTVYIKMLGRRIFAREHGSNKKLAAQS 132
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 133 CALSLVRQLYHLGVV 147
>gi|82268346|sp|Q4SS66.1|TRBP2_TETNG RecName: Full=RISC-loading complex subunit tarbp2
gi|47222849|emb|CAF96516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 345
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + +
Sbjct: 151 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAAAKMLSRI-- 206
Query: 75 SGQVNERDVPVE 86
DVPV+
Sbjct: 207 ------HDVPVD 212
>gi|335424915|ref|ZP_08553908.1| RNAse III [Salinisphaera shabanensis E1L3A]
gi|334887046|gb|EGM25385.1| RNAse III [Salinisphaera shabanensis E1L3A]
Length = 233
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 7 VKAFLNEWCQKNSK-QPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
K L EW Q S+ +PE++ V G H Q F+ R+A G G ++ A+ +A
Sbjct: 162 AKTQLQEWLQARSRSRPEYELVEVTGADHCQHFVSRCRLADSGDSVEGEGGGRRKAEQDA 221
Query: 65 AKDFVQYL 72
A+ ++ L
Sbjct: 222 ARRMLEKL 229
>gi|410920129|ref|XP_003973536.1| PREDICTED: RISC-loading complex subunit tarbp2-like [Takifugu
rubripes]
Length = 345
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + +
Sbjct: 151 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSG--TSKKLAKRNAAAKMLSRI-- 206
Query: 75 SGQVNERDVPVE 86
DVPV+
Sbjct: 207 ------HDVPVD 212
>gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
14600]
gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
14600]
Length = 230
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 26 VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVN 79
VR GP H +RF+ E R+ G +G G +KK ++ AA + YL G V+
Sbjct: 178 VREEGPDHAKRFVTEARLDG-RTIGRGEGGSKKASEQEAAYQGLLYLKERGHVS 230
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ + P + +G H F C + +AGI + G + NKK A+ N
Sbjct: 78 GVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKN 136
Query: 64 AA 65
AA
Sbjct: 137 AA 138
>gi|452953036|gb|EME58459.1| ribonuclease III [Amycolatopsis decaplanina DSM 44594]
Length = 248
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAG--IGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP HR+ F + + G +GY G+ T KK+A+ AA+
Sbjct: 186 PEYKVEDTGPDHRKEFSATVLVGGRELGY---GSGTTKKEAEQKAAE 229
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + P + +GP H F C + IAG+ + G T KK AQ N
Sbjct: 86 GVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFSCTVEIAGMSFTGEAAKT-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
Length = 259
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 8 KAFLNEWCQKNSKQP--EFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK S +P + GP H++ F + GI +G G +KK+A+ AA
Sbjct: 166 KTELQEMLQKKSPEPISYVILNEEGPDHQKLFTAGVVYCGI-IIGQGTGRSKKEAEQQAA 224
Query: 66 KDFVQYLVRSGQVNER 81
K + L +G++N R
Sbjct: 225 KIALLELPSNGEINLR 240
>gi|427419495|ref|ZP_18909678.1| ribonuclease III [Leptolyngbya sp. PCC 7375]
gi|425762208|gb|EKV03061.1| ribonuclease III [Leptolyngbya sp. PCC 7375]
Length = 223
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 26 VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ A+GP H ++F E+R+ G+ Y G G K+DA+ AA+
Sbjct: 175 IAASGPDHAKQFTAEVRVKGLLY-GRGKGKRKQDAEKKAAQ 214
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG + G T KK AQ N
Sbjct: 86 GIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFTCTVELAGKTFTGNPGKT-KKQAQKN 144
Query: 64 AA----KDFVQYLVRSGQVNERDVPVE 86
AA D Q L R G+ + P +
Sbjct: 145 AAMAAWSDLKQ-LPRIGEPSSSSCPAD 170
>gi|376254621|ref|YP_005143080.1| ribonuclease III [Corynebacterium diphtheriae PW8]
gi|372117705|gb|AEX70175.1| ribonuclease III [Corynebacterium diphtheriae PW8]
Length = 249
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 14 WCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
+++ + P + GP+H Q F ++ + G +G G TNKK A+ AA V +L
Sbjct: 185 LAERSLEMPTYTSTVTGPEHEQTFTAKVAVHGT-VLGTGVGTNKKLAEQAAAHKAVGFL 242
>gi|194902968|ref|XP_001980797.1| GG16917 [Drosophila erecta]
gi|190652500|gb|EDV49755.1| GG16917 [Drosophila erecta]
Length = 892
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 10 FLNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
LNE KN P++ +R GP H + FL + I G Y NKK+A+ NAA
Sbjct: 822 VLNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKEAKLNAA 879
>gi|376243136|ref|YP_005133988.1| ribonuclease III [Corynebacterium diphtheriae CDCE 8392]
gi|372106378|gb|AEX72440.1| ribonuclease III [Corynebacterium diphtheriae CDCE 8392]
Length = 249
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 14 WCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
+++ + P + GP+H Q F ++ + G +G G TNKK A+ AA V +L
Sbjct: 185 LAERSLEMPTYTSTVTGPEHEQTFTAKVAVHGT-VLGTGVGTNKKLAEQAAAHKAVGFL 242
>gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
Length = 219
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E+ Q K + V+ GP HR F E+ + +G G ++ K+A+ NAAK
Sbjct: 148 KTQLQEFIQLERKSLSYKTVKVGGPSHRPIFKSEVFLENSIMLGTGQGSSTKEAEQNAAK 207
Query: 67 DFVQYLVR 74
+ + +V+
Sbjct: 208 EALSKVVK 215
>gi|38229197|ref|NP_938290.1| 34L [Yaba monkey tumor virus]
gi|38000468|gb|AAR07391.1| 34L [Yaba monkey tumor virus]
Length = 184
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYV-GAGNSTNKKDAQTNAAKDFV 69
+NE+CQ S+ +V AG H F + I+GI + GN+ KK+A+ A+K +
Sbjct: 116 INEYCQLTSRDWSIEVTTAGESHCPIFTASVIISGIKFKPEIGNT--KKEAKHKASKITM 173
Query: 70 QYLVRSGQV 78
+ +++S V
Sbjct: 174 EEILKSSIV 182
>gi|41053389|ref|NP_956291.1| RISC-loading complex subunit tarbp2 [Danio rerio]
gi|82240186|sp|Q7SXR1.1|TRBP2_DANRE RecName: Full=RISC-loading complex subunit tarbp2
gi|33311802|gb|AAH55390.1| TAR (HIV) RNA binding protein 2 [Danio rerio]
Length = 346
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + +
Sbjct: 150 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSG--TSKKLAKRNAAAKMLSRI-- 205
Query: 75 SGQVNERDVPVE 86
DVPV+
Sbjct: 206 ------HDVPVD 211
>gi|312074021|ref|XP_003139783.1| hypothetical protein LOAG_04198 [Loa loa]
Length = 184
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDA 60
++G V + +K P+F +GP + +RFL + + G+ Y + ST+KK
Sbjct: 89 LTGKHPVSVLMELCSKKRWHAPQFTCLESGPSNNRRFLWKAVVNGVEYQPSTPSTSKKTG 148
Query: 61 QTNAAKDFVQYL 72
+ A + +Q L
Sbjct: 149 KAQACQVVLQSL 160
>gi|125777342|ref|XP_001359575.1| GA20947 [Drosophila pseudoobscura pseudoobscura]
gi|54639322|gb|EAL28724.1| GA20947 [Drosophila pseudoobscura pseudoobscura]
Length = 851
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 10 FLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
LNE KN P + + +GP H + FL + I G Y NKK+A+ NAAK
Sbjct: 781 VLNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKLNAAKL 840
Query: 68 FVQYL 72
++ L
Sbjct: 841 CLESL 845
>gi|29348766|ref|NP_812269.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482]
gi|29340672|gb|AAO78463.1| ribonuclease III [Bacteroides thetaiotaomicron VPI-5482]
Length = 324
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|419966954|ref|ZP_14482868.1| exoribonuclease II [Rhodococcus opacus M213]
gi|414567674|gb|EKT78453.1| exoribonuclease II [Rhodococcus opacus M213]
Length = 619
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73
P++ VR G H F CE+R + + G+ T K A+T AA D V L+
Sbjct: 560 PQWAVRMEGAAHAPVFTCEVRY--LDHTATGSGTTKNLARTTAAADLVDSLL 609
>gi|383124939|ref|ZP_09945599.1| ribonuclease 3 [Bacteroides sp. 1_1_6]
gi|90101612|sp|Q8A2E8.2|RNC_BACTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|382983539|gb|EES68991.2| ribonuclease 3 [Bacteroides sp. 1_1_6]
Length = 311
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|298387131|ref|ZP_06996685.1| ribonuclease 3 [Bacteroides sp. 1_1_14]
gi|298260281|gb|EFI03151.1| ribonuclease 3 [Bacteroides sp. 1_1_14]
Length = 324
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|265764902|ref|ZP_06093177.1| ribonuclease III [Bacteroides sp. 2_1_16]
gi|263254286|gb|EEZ25720.1| ribonuclease III [Bacteroides sp. 2_1_16]
Length = 290
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ ++ ++ F E+RI GI G+G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGI-LGGSGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|423214797|ref|ZP_17201325.1| ribonuclease 3 [Bacteroides xylanisolvens CL03T12C04]
gi|392692060|gb|EIY85298.1| ribonuclease 3 [Bacteroides xylanisolvens CL03T12C04]
Length = 351
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|60679772|ref|YP_209916.1| ribonuclease III [Bacteroides fragilis NCTC 9343]
gi|375356557|ref|YP_005109328.1| putative ribonuclease III [Bacteroides fragilis 638R]
gi|383116521|ref|ZP_09937269.1| ribonuclease 3 [Bacteroides sp. 3_2_5]
gi|423259429|ref|ZP_17240352.1| ribonuclease 3 [Bacteroides fragilis CL07T00C01]
gi|423263597|ref|ZP_17242600.1| ribonuclease 3 [Bacteroides fragilis CL07T12C05]
gi|81317155|sp|Q5LIS2.1|RNC_BACFN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|60491206|emb|CAH05954.1| putative ribonuclease III [Bacteroides fragilis NCTC 9343]
gi|251948208|gb|EES88490.1| ribonuclease 3 [Bacteroides sp. 3_2_5]
gi|301161237|emb|CBW20775.1| putative ribonuclease III [Bacteroides fragilis 638R]
gi|387777009|gb|EIK39109.1| ribonuclease 3 [Bacteroides fragilis CL07T00C01]
gi|392707019|gb|EIZ00139.1| ribonuclease 3 [Bacteroides fragilis CL07T12C05]
Length = 290
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ ++ ++ F E+RI GI G+G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGI-LGGSGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|423269922|ref|ZP_17248894.1| ribonuclease 3 [Bacteroides fragilis CL05T00C42]
gi|423272623|ref|ZP_17251570.1| ribonuclease 3 [Bacteroides fragilis CL05T12C13]
gi|423282514|ref|ZP_17261399.1| ribonuclease 3 [Bacteroides fragilis HMW 615]
gi|392700768|gb|EIY93930.1| ribonuclease 3 [Bacteroides fragilis CL05T00C42]
gi|392708700|gb|EIZ01805.1| ribonuclease 3 [Bacteroides fragilis CL05T12C13]
gi|404582082|gb|EKA86777.1| ribonuclease 3 [Bacteroides fragilis HMW 615]
Length = 290
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ ++ ++ F E+RI GI G+G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGI-LGGSGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|254283270|ref|ZP_04958238.1| ribonuclease III [gamma proteobacterium NOR51-B]
gi|219679473|gb|EED35822.1| ribonuclease III [gamma proteobacterium NOR51-B]
Length = 222
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L EW Q ++ P +D V+ G HRQ F ++AG G ++++ A+ AA
Sbjct: 153 KTRLQEWLQARGEELPSYDLVQVDGEDHRQSFTVTCQLAGRDLALTGRGSSRRRAEQAAA 212
Query: 66 KDFVQYL 72
K ++ L
Sbjct: 213 KATLERL 219
>gi|195153156|ref|XP_002017495.1| GL22329 [Drosophila persimilis]
gi|194112552|gb|EDW34595.1| GL22329 [Drosophila persimilis]
Length = 854
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 10 FLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
LNE KN P + + +GP H + FL + I G Y NKK+A+ NAAK
Sbjct: 784 VLNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKLNAAKL 843
Query: 68 FVQYL 72
++ L
Sbjct: 844 CLESL 848
>gi|443653781|ref|ZP_21131163.1| ribonuclease III [Microcystis aeruginosa DIANCHI905]
gi|159029006|emb|CAO87467.1| rnc [Microcystis aeruginosa PCC 7806]
gi|443333967|gb|ELS48501.1| ribonuclease III [Microcystis aeruginosa DIANCHI905]
Length = 226
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K +W N + PE+ + GP H + F E+R+ + Y G G K+DA AA
Sbjct: 157 KNLFQQWALANFASNPEYAIIDVTGPPHAREFTAEVRVNNLLY-GTGKGKRKQDATKAAA 215
Query: 66 KDFVQ 70
+D ++
Sbjct: 216 EDALK 220
>gi|53711509|ref|YP_097501.1| ribonuclease III [Bacteroides fragilis YCH46]
gi|336407706|ref|ZP_08588202.1| hypothetical protein HMPREF1018_00217 [Bacteroides sp. 2_1_56FAA]
gi|81383900|sp|Q64ZV9.1|RNC_BACFR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52214374|dbj|BAD46967.1| ribonuclease III [Bacteroides fragilis YCH46]
gi|335944785|gb|EGN06602.1| hypothetical protein HMPREF1018_00217 [Bacteroides sp. 2_1_56FAA]
Length = 290
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ ++ ++ F E+RI GI G+G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGI-LGGSGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|425471703|ref|ZP_18850554.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9701]
gi|389882349|emb|CCI37163.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9701]
Length = 226
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K +W N + PE+ + GP H + F E+R+ + Y G G K+DA AA
Sbjct: 157 KNLFQQWALANFASNPEYAIIDVTGPPHAREFTAEVRVNNLLY-GTGKGKRKQDATKAAA 215
Query: 66 KDFVQ 70
+D ++
Sbjct: 216 EDALK 220
>gi|85373795|ref|YP_457857.1| ribonuclease III [Erythrobacter litoralis HTCC2594]
gi|84786878|gb|ABC63060.1| ribonuclease III [Erythrobacter litoralis HTCC2594]
Length = 223
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKNSKQP-EFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW N ++P +++ V +GP H F + + +G A +++K++A+T AA
Sbjct: 157 KSALQEWAAGNQRRPPQYELVDRSGPDHAAIFTVRVEVHKVGAAEA-TASSKQEAETEAA 215
Query: 66 KDFVQ 70
K F++
Sbjct: 216 KKFME 220
>gi|425446310|ref|ZP_18826318.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9443]
gi|389733466|emb|CCI02748.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9443]
Length = 261
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K +W N + PE+ + GP H + F E+R+ + Y G G K+DA AA
Sbjct: 193 KNLFQQWALANFASNPEYAIIDVTGPPHAREFTAEVRVNNLLY-GTGKGKRKQDATKAAA 251
Query: 66 KDFVQ 70
+D ++
Sbjct: 252 EDALK 256
>gi|262405515|ref|ZP_06082065.1| ribonuclease III [Bacteroides sp. 2_1_22]
gi|298480489|ref|ZP_06998686.1| ribonuclease 3 [Bacteroides sp. D22]
gi|262356390|gb|EEZ05480.1| ribonuclease III [Bacteroides sp. 2_1_22]
gi|298273310|gb|EFI14874.1| ribonuclease 3 [Bacteroides sp. D22]
Length = 331
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 164 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 222
Query: 66 K 66
+
Sbjct: 223 Q 223
>gi|383111106|ref|ZP_09931924.1| ribonuclease 3 [Bacteroides sp. D2]
gi|382949427|gb|EFS31511.2| ribonuclease 3 [Bacteroides sp. D2]
Length = 354
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|297624883|ref|YP_003706317.1| double-stranded RNA binding domain-containing protein [Truepera
radiovictrix DSM 17093]
gi|297166063|gb|ADI15774.1| double-stranded RNA binding domain protein [Truepera radiovictrix
DSM 17093]
Length = 157
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 8 KAFLNEWC-QKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E C Q P F+ R GP H RF E+ I G Y G G + K+DA+ A+
Sbjct: 5 KGTLIERCKQLRLGAPSFNTRNLGPDHEPRFESEVLIQGEVY-GRGEAGTKRDAERRAS 62
>gi|195499487|ref|XP_002096969.1| GE25964 [Drosophila yakuba]
gi|194183070|gb|EDW96681.1| GE25964 [Drosophila yakuba]
Length = 908
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 10 FLNEWCQKNS-KQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
LNE KN P++ +R GP H + FL + I G Y NKK+A+ NAA
Sbjct: 838 VLNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKEAKLNAA 895
>gi|345510700|ref|ZP_08790263.1| ribonuclease 3 [Bacteroides sp. D1]
gi|345454384|gb|EEO48513.2| ribonuclease 3 [Bacteroides sp. D1]
Length = 355
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|432906952|ref|XP_004077608.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced,
double-stranded RNA-activated protein kinase [Oryzias
latipes]
Length = 900
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 25 DVRAAGPKHRQRFLCELRIAGIGY-VGAGNSTNKKDAQTNAAKDFVQYLVRSGQ 77
DV + GP H +RF + G GY G GN NKK+A+ NAA++ ++ +GQ
Sbjct: 25 DVASDGPDHIRRFTIRAVVNGEGYPEGVGN--NKKEAKKNAARN--AWMALTGQ 74
>gi|157939656|ref|YP_001497028.1| dsRNA-binding [Tanapox virus]
gi|146746372|gb|ABQ43508.1| dsRNA-binding [Tanapox virus]
gi|146746528|gb|ABQ43663.1| dsRNA-binding [Tanapox virus]
Length = 181
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
LNE+CQ + D+ +G H F + I+GI + A +T K++A+ NA+K
Sbjct: 113 LNEYCQFTCRDWSIDITTSGKSHCPMFTATVIISGIKFKPAIGNT-KREAKYNASK 167
>gi|423294051|ref|ZP_17272178.1| ribonuclease 3 [Bacteroides ovatus CL03T12C18]
gi|392676719|gb|EIY70146.1| ribonuclease 3 [Bacteroides ovatus CL03T12C18]
Length = 354
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|336417433|ref|ZP_08597757.1| ribonuclease 3 [Bacteroides ovatus 3_8_47FAA]
gi|335936179|gb|EGM98119.1| ribonuclease 3 [Bacteroides ovatus 3_8_47FAA]
Length = 354
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|170037804|ref|XP_001846745.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167881149|gb|EDS44532.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 896
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 9 AFLNEWCQKNS-KQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ L E+ K P +D V +GP H + F+ ++ + G+ Y A ++ KKDA+ AA+
Sbjct: 826 SILGEYASKRKWNPPRYDLVHESGPGHAKNFVFKVIVNGLEYQPAISNNTKKDAKATAAR 885
Query: 67 DFVQYL 72
+Q L
Sbjct: 886 FCLQQL 891
>gi|299147039|ref|ZP_07040106.1| ribonuclease 3 [Bacteroides sp. 3_1_23]
gi|298514924|gb|EFI38806.1| ribonuclease 3 [Bacteroides sp. 3_1_23]
Length = 355
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|295086176|emb|CBK67699.1| RNAse III [Bacteroides xylanisolvens XB1A]
Length = 355
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + P + +GP H F C + IAG+ + G + T KK AQ N
Sbjct: 86 GVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFSCSVEIAGMHFTGDPSRT-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|348688278|gb|EGZ28092.1| hypothetical protein PHYSODRAFT_472216 [Phytophthora sojae]
Length = 374
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 11 LNEWCQKNSKQPEFDVRAAGP-KHRQRFLCELRIAG 45
LNE QK +Q E+ ++ G HR+R++CEL+I G
Sbjct: 101 LNERMQKEKRQVEYLIQDEGETSHRRRYVCELQIDG 136
>gi|423248179|ref|ZP_17229195.1| ribonuclease 3 [Bacteroides fragilis CL03T00C08]
gi|423253128|ref|ZP_17234059.1| ribonuclease 3 [Bacteroides fragilis CL03T12C07]
gi|392657028|gb|EIY50665.1| ribonuclease 3 [Bacteroides fragilis CL03T12C07]
gi|392660286|gb|EIY53900.1| ribonuclease 3 [Bacteroides fragilis CL03T00C08]
Length = 290
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ ++ ++ F E+RI GI G+G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGI-LGGSGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|237720469|ref|ZP_04550950.1| ribonuclease III [Bacteroides sp. 2_2_4]
gi|229450220|gb|EEO56011.1| ribonuclease III [Bacteroides sp. 2_2_4]
Length = 328
Score = 34.7 bits (78), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 164 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 222
Query: 66 K 66
+
Sbjct: 223 Q 223
>gi|330836489|ref|YP_004411130.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
gi|329748392|gb|AEC01748.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
Length = 256
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K P +++ R +GP+H + F ++ + G G + NKK+A+ NAA
Sbjct: 182 KTLLQEIIQKRYHKYPVYELLRTSGPEHDRTFWVQVNVVG-NIFGPASGANKKEAEQNAA 240
>gi|160883983|ref|ZP_02064986.1| hypothetical protein BACOVA_01957 [Bacteroides ovatus ATCC 8483]
gi|336403712|ref|ZP_08584422.1| ribonuclease 3 [Bacteroides sp. 1_1_30]
gi|423290674|ref|ZP_17269523.1| ribonuclease 3 [Bacteroides ovatus CL02T12C04]
gi|156110713|gb|EDO12458.1| ribonuclease III [Bacteroides ovatus ATCC 8483]
gi|335945204|gb|EGN07018.1| ribonuclease 3 [Bacteroides sp. 1_1_30]
gi|392665327|gb|EIY58855.1| ribonuclease 3 [Bacteroides ovatus CL02T12C04]
Length = 352
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 188 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 246
Query: 66 K 66
+
Sbjct: 247 Q 247
>gi|390439612|ref|ZP_10227997.1| Ribonuclease 3 (modular protein) [Microcystis sp. T1-4]
gi|389836983|emb|CCI32121.1| Ribonuclease 3 (modular protein) [Microcystis sp. T1-4]
Length = 290
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K +W N + PE+ + GP H + F E+R+ + Y G G K+DA AA
Sbjct: 222 KNLFQQWALANFASNPEYAIIDVTGPPHAREFTAEVRVNNLLY-GTGKGKRKQDATKAAA 280
Query: 66 KDFVQ 70
+D ++
Sbjct: 281 EDALK 285
>gi|344226974|gb|AEN03185.1| dsRNA-dependent protein kinase [Carassius auratus]
Length = 677
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 9 AFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGY-VGAGNSTNKKDAQTNAAK 66
A+LN++CQKN +F V GP H F+ ++ I G Y G G S+ K+A+ +AA+
Sbjct: 217 AYLNDFCQKNKSVLDFKLVERRGPPHNPEFVYKVVIHGKEYPEGQGKSS--KEAKQHAAQ 274
>gi|443733452|gb|ELU17807.1| hypothetical protein CAPTEDRAFT_171815 [Capitella teleta]
Length = 364
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 9 AFLNEWCQKNSKQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
++L E C K P++D+ A G H F+ ++ + I VG G +KK A+ NAA
Sbjct: 36 SYLQELCTKRGLTPQYDLIANEGAVHEPTFVFKVVVGDI--VGTGKGPSKKKAKHNAAVS 93
Query: 68 FVQYL 72
+ L
Sbjct: 94 VLNQL 98
>gi|422304165|ref|ZP_16391514.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9806]
gi|389790766|emb|CCI13385.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9806]
Length = 226
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K +W N + PE+ + GP H + F E+R+ + Y G G K+DA AA
Sbjct: 157 KNLFQQWALANFASNPEYAIIDVTGPPHAREFTAEVRVNNLLY-GTGKGKRKQDATKAAA 215
Query: 66 KDFVQ 70
+D ++
Sbjct: 216 EDALK 220
>gi|380693189|ref|ZP_09858048.1| ribonuclease III [Bacteroides faecis MAJ27]
Length = 321
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
Length = 234
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 8 KAFLNEWCQKNSK-QPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK S +PE+ V GP H + F E++ +G G ++KK+AQ AA
Sbjct: 168 KTTLQEMIQKRSNARPEYYVIEEKGPDHSKEFTVEVKFNDRS-LGEGTGSSKKEAQQQAA 226
Query: 66 KDFVQYL 72
K+ ++ L
Sbjct: 227 KNALKKL 233
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L E+ QK Q P ++ GP H+ F + + G+ Y N+K A+ +AA+
Sbjct: 17 KSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSAAE 76
Query: 67 DFVQYLVRSGQVNE 80
+Q L +S ++++
Sbjct: 77 VALQELAKSSELSQ 90
>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
Length = 254
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+CQ+ + P++ + +GP H++ F +RI + G G +KK+A+ AA
Sbjct: 170 KTQLQEYCQRELETLPQYVITGQSGPDHQKVFEVAVRIRDKNW-GEGQGHSKKEAEQKAA 228
Query: 66 KDFVQYLVRS 75
K ++ + R+
Sbjct: 229 KSALERIART 238
>gi|12085017|ref|NP_073419.1| 34L protein [Yaba-like disease virus]
gi|12056193|emb|CAC21272.1| 34L protein [Yaba-like disease virus]
Length = 185
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
LNE+CQ + D+ +G H F + I+GI + A +T K++A+ NA+K
Sbjct: 117 LNEYCQFTCRDWSIDITTSGKSHCPMFTATVIISGIKFKPAIGNT-KREAKYNASK 171
>gi|166365898|ref|YP_001658171.1| ribonuclease III [Microcystis aeruginosa NIES-843]
gi|425466502|ref|ZP_18845800.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9809]
gi|166088271|dbj|BAG02979.1| ribonuclease III [Microcystis aeruginosa NIES-843]
gi|389830956|emb|CCI26688.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9809]
Length = 226
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K +W N + PE+ + GP H + F E+R+ + Y G G K+DA AA
Sbjct: 157 KNLFQQWALANFASNPEYAIIDVTGPPHAREFTAEVRVNNLLY-GTGKGKRKQDATKAAA 215
Query: 66 KD 67
+D
Sbjct: 216 ED 217
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + P + +GP H F C + IAG+ + G + T KK AQ N
Sbjct: 86 GVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFSCTVEIAGMHFTGDPSRT-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|423281233|ref|ZP_17260144.1| ribonuclease 3 [Bacteroides fragilis HMW 610]
gi|424665832|ref|ZP_18102868.1| ribonuclease 3 [Bacteroides fragilis HMW 616]
gi|404574085|gb|EKA78836.1| ribonuclease 3 [Bacteroides fragilis HMW 616]
gi|404583397|gb|EKA88078.1| ribonuclease 3 [Bacteroides fragilis HMW 610]
Length = 290
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ + ++ F E+RI GI GAG +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQFLDKENNPVFQTEVRIEGI-LGGAGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>gi|357392059|ref|YP_004906900.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length = 269
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V +GP H + F R+AG + G+G+ +KK+A+ AA+
Sbjct: 198 PEYVVTESGPDHEKTFTAAARVAGQDH-GSGSGRSKKEAEQKAAE 241
>gi|440684120|ref|YP_007158915.1| RNAse III [Anabaena cylindrica PCC 7122]
gi|428681239|gb|AFZ60005.1| RNAse III [Anabaena cylindrica PCC 7122]
Length = 228
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 13 EWCQKN--SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
EW Q+ + P++ + GP H F+ ++ + G Y G G NKK+A+ +AA+D +
Sbjct: 160 EWVQREIGANPPKYMTEQIGGPSHAPEFVAKVLVDGKEY-GIGKGRNKKEAEKDAAEDAL 218
Query: 70 QYLVRSG 76
L + G
Sbjct: 219 AKLKKRG 225
>gi|425437049|ref|ZP_18817477.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9432]
gi|425462711|ref|ZP_18842178.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9808]
gi|440754206|ref|ZP_20933408.1| ribonuclease III [Microcystis aeruginosa TAIHU98]
gi|389678042|emb|CCH93062.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9432]
gi|389824179|emb|CCI27048.1| Ribonuclease 3 [Microcystis aeruginosa PCC 9808]
gi|440174412|gb|ELP53781.1| ribonuclease III [Microcystis aeruginosa TAIHU98]
Length = 225
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K +W N + PE+ + GP H + F E+R+ + Y G G K+DA AA
Sbjct: 157 KNLFQQWALANFASNPEYAIIDVTGPPHAREFTAEVRVNNLLY-GTGKGKRKQDATKAAA 215
Query: 66 KD 67
+D
Sbjct: 216 ED 217
>gi|258645853|ref|ZP_05733322.1| ribonuclease III [Dialister invisus DSM 15470]
gi|260403226|gb|EEW96773.1| ribonuclease III [Dialister invisus DSM 15470]
Length = 249
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 8 KAFLNEWCQKNSK-QPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L E QKN ++V R GP H + EL I G +G G NKK+A NAA
Sbjct: 173 KSDLQEIAQKNGDVDIRYEVVRDEGPDHDKTIWMELFINGKA-LGTGIGKNKKEAAQNAA 231
Query: 66 KDFVQYLVRSGQV 78
K+ ++ L + V
Sbjct: 232 KEAIERLHKGESV 244
>gi|338732330|ref|YP_004670803.1| ribonuclease 3 [Simkania negevensis Z]
gi|336481713|emb|CCB88312.1| ribonuclease 3 [Simkania negevensis Z]
Length = 236
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 8 KAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
KA L ++CQKN K P ++V GP H + F +++ +G G T+KK+A+ A
Sbjct: 168 KAELQDYCQKNYQKPPTYEVINEEGPDHEKTFYVVVKLDN-QILGKGAGTSKKEAEQMCA 226
Query: 66 KDFVQ 70
+ ++
Sbjct: 227 QQAIE 231
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG+ + G T KK AQ N
Sbjct: 86 GVYKNLLQETAHRAGLKLPVYTTIRSGPGHVPVFSCNVELAGMSFTGESART-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|159163523|pdb|1X48|A Chain A, Solution Structure Of The Second Dsrm Domain In
Interferon- Induced, Double-Stranded Rna-Activated
Protein Kinase
Length = 88
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 21/79 (26%)
Query: 5 GLVKAFLN--------EWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTN 56
GLV +F E C+ NS+ P QRF+C+ +I Y G G+
Sbjct: 10 GLVNSFAQKKKLSVNYEQCEPNSELP------------QRFICKCKIGQTMY-GTGSGVT 56
Query: 57 KKDAQTNAAKDFVQYLVRS 75
K++A+ AAK+ Q L++S
Sbjct: 57 KQEAKQLAAKEAYQKLLKS 75
>gi|357118476|ref|XP_003560980.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
distachyon]
Length = 360
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 9 AFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDF 68
+ LNE CQK+ P+F G + + ++ + G VG G+S + A+ NA++D
Sbjct: 200 SMLNELCQKHGMVPQFKESKKG----EMTVIKIFVGG-ALVGMGSSEQRAIAKLNASRDA 254
Query: 69 VQYLVRSGQVNERDVPVENIPMTPTGPSVTVNT 101
V L+ P + + T GP + V
Sbjct: 255 VSKLLGD--------PKQQVLTTGVGPGLVVEV 279
>gi|88801614|ref|ZP_01117142.1| putative ribonuclease III [Polaribacter irgensii 23-P]
gi|88782272|gb|EAR13449.1| putative ribonuclease III [Polaribacter irgensii 23-P]
Length = 245
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 8 KAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K + EWCQK K+ FD +G + + F ++ I G + G +T+KK A+ A+K
Sbjct: 174 KGLIIEWCQKQKKRYAFDAYEDSGNETTKHFSVKISIDG-QQIAKGRATSKKKAEEQASK 232
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG + G T KK AQ N
Sbjct: 86 GIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFACTVELAGKAFTGNPGKT-KKQAQKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
Length = 235
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E Q N+ + + V +GP H + F +++ G +G G NKK+A+ AA+
Sbjct: 168 KTILQEIIQGNNGKISYKLVGESGPDHNKEFEMQVK-CGQDTIGIGKGKNKKEAEKEAAR 226
Query: 67 DFVQYLVRSGQV 78
D LV+ G++
Sbjct: 227 D---ALVKMGEL 235
>gi|453364526|dbj|GAC79803.1| ribonuclease III [Gordonia malaquae NBRC 108250]
Length = 242
Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 15 CQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
++ + QP + V + GP H + F +AG +G G KK+A+ NAA
Sbjct: 173 AERGTGQPHYQVTSTGPDHDKEFTATAVVAGR-SLGEGVGRTKKEAEQNAA 222
>gi|386714302|ref|YP_006180625.1| ribonuclease III [Halobacillus halophilus DSM 2266]
gi|384073858|emb|CCG45351.1| ribonuclease III [Halobacillus halophilus DSM 2266]
Length = 230
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 8 KAFLNEWCQ--KNSKQPEFDVRAAGPKHRQRFLCELRIAG-IGYVGAGNSTNKKDAQTNA 64
K+ L E+ Q KNSK V GP H + F+ +RI G +G +G G + KK+A+ A
Sbjct: 161 KSQLQEFIQRDKNSKIEYEIVEERGPAHSREFIAHVRIQGEVGGIGVGRT--KKEAEQRA 218
Query: 65 AK 66
A+
Sbjct: 219 AQ 220
>gi|397728829|ref|ZP_10495619.1| RNB domain protein [Rhodococcus sp. JVH1]
gi|396935114|gb|EJJ02234.1| RNB domain protein [Rhodococcus sp. JVH1]
Length = 624
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73
P++ VR G H F CE+R + + G+ T K A+T AA D V L+
Sbjct: 565 PQWAVRMEGAAHAPVFTCEVRY--LDHTATGSGTTKNLARTAAAADLVDSLL 614
>gi|18640118|ref|NP_570192.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus]
gi|18448525|gb|AAL69771.1| SPV032 putative PKR inhibitor host range protein [Swinepox virus]
Length = 177
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQ 70
LNE+CQ + D+ ++G H F + ++GI G + KK+A+ AA++ +
Sbjct: 109 LNEYCQITQRDWIIDIISSGQSHCPIFTASITVSGIK-CKTGKGSTKKEAKQIAARETMN 167
Query: 71 YLV 73
+++
Sbjct: 168 FIL 170
>gi|452943710|ref|YP_007499875.1| ribonuclease III [Hydrogenobaculum sp. HO]
gi|452882128|gb|AGG14832.1| ribonuclease III [Hydrogenobaculum sp. HO]
Length = 232
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ P ++V + GP+HR+ F E + G GNS KK+A+ AA
Sbjct: 160 KTALQEITQKKWKERPIYNVISVEGPEHRKTFTVECLFKDLRTTGKGNS--KKNAEQEAA 217
Query: 66 KDFVQYL 72
K+ + +
Sbjct: 218 KNMLHMI 224
>gi|374314927|ref|YP_005061355.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350571|gb|AEV28345.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 248
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+ QK ++ P + V+ GP+H F E+++ + + G NKK+A+ NAA
Sbjct: 177 KTSLQEYMQKRWRKCPTYTLVKKTGPEHDFTFFVEVKVNDLSF-GPAKGRNKKEAEQNAA 235
Query: 66 K 66
K
Sbjct: 236 K 236
>gi|393910119|gb|EJD75745.1| G-patch domain-containing protein [Loa loa]
Length = 1045
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDA 60
++G V + +K P+F +GP + +RFL + + G+ Y + ST+KK
Sbjct: 961 LTGKHPVSVLMELCSKKRWHAPQFTCLESGPSNNRRFLWKAVVNGVEYQPSTPSTSKKTG 1020
Query: 61 QTNAAKDFVQYL 72
+ A + +Q L
Sbjct: 1021 KAQACQVVLQSL 1032
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|384146954|ref|YP_005529770.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|399535602|ref|YP_006548264.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|398316372|gb|AFO75319.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length = 234
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP HR+ F + +AG +G G + KK+A+ AA+
Sbjct: 171 PEYKVEDTGPDHRKEFTATVLVAG-RPLGHGAGSTKKEAEQKAAE 214
>gi|349700038|ref|ZP_08901667.1| ribonuclease III [Gluconacetobacter europaeus LMG 18494]
Length = 258
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L EW + P++ V +A GP H RF+ + + G G G + +K+ A+++AA
Sbjct: 177 KTALQEWVLGRGLPLPQYRVVSADGPSHAPRFV--IAVDAQGKTGQGIAGSKRAAESDAA 234
Query: 66 KDFVQYLVRSGQ 77
D ++ L GQ
Sbjct: 235 SDLLRQLGAGGQ 246
>gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
gi|226741373|sp|B4U7T8.1|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
Length = 232
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ P ++V + GP+HR+ F E + G GNS KK A+ AA
Sbjct: 160 KTALQEITQKKWKERPIYNVISVEGPEHRKTFTVECLFKDLRTTGKGNS--KKYAEQEAA 217
Query: 66 KDFVQYL 72
K+ +Q +
Sbjct: 218 KNMLQII 224
>gi|317058970|ref|ZP_07923455.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684646|gb|EFS21481.1| ribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 235
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E+CQK + P++ V GP HR+ F E+++ + TNKK A+ AA
Sbjct: 166 KTILQEYCQKKYRDIPKYTLVGEEGPDHRKLF--EMQVQIQNNIAKAKGTNKKIAEQMAA 223
Query: 66 KDFVQYL 72
K + L
Sbjct: 224 KQLCKEL 230
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,940,846,175
Number of Sequences: 23463169
Number of extensions: 71870538
Number of successful extensions: 165973
Number of sequences better than 100.0: 644
Number of HSP's better than 100.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 456
Number of HSP's that attempted gapping in prelim test: 165569
Number of HSP's gapped (non-prelim): 769
length of query: 122
length of database: 8,064,228,071
effective HSP length: 89
effective length of query: 33
effective length of database: 5,976,006,030
effective search space: 197208198990
effective search space used: 197208198990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)