BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14233
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHQ|A Chain A, Solution Structure Of The N-Terminal Dsrbd From
Hypothetical Protein Bab28848
pdb|2RS6|A Chain A, Solution Structure Of The N-Terminal Dsrbd From Rna
Helicase A
Length = 99
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 64/95 (67%)
Query: 2 SGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
SG +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ
Sbjct: 3 SGSSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQ 62
Query: 62 TNAAKDFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
+NAA+DFV YLVR +V +VP I P+GPS
Sbjct: 63 SNAARDFVNYLVRINEVKSEEVPAVGIVPPPSGPS 97
>pdb|3VYY|A Chain A, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase A (dhx9)
pdb|3VYY|B Chain B, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase A (dhx9)
Length = 91
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 59/88 (67%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTP 92
A+DFV YLVR ++ +VP + P
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPP 89
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
Length = 221
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 1 MSGDGLVKAFLNEWCQK-NSKQPEFDVRAAGPKHR-QRFLCELRIAGIGYVGAGNSTNKK 58
M GL K L E+ QK N P + + R +F C + I GI Y GA T KK
Sbjct: 3 MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KK 61
Query: 59 DAQTNAAK 66
DA+ +A +
Sbjct: 62 DAEISAGR 69
>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHR-QRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GL K L E+ QK N P + + R +F C + I GI Y GA T KKDA+
Sbjct: 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KKDAEI 62
Query: 63 NAAK 66
+A +
Sbjct: 63 SAGR 66
>pdb|3VYX|A Chain A, Structural Insights Into Risc Assembly Facilitated By
Dsrna Binding Domains Of Human Rna Helicase (dhx9)
Length = 114
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 32 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 91
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 92 CALSLVRQLYHLGVV 106
>pdb|1X48|A Chain A, Solution Structure Of The Second Dsrm Domain In
Interferon- Induced, Double-Stranded Rna-Activated
Protein Kinase
Length = 88
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 21/79 (26%)
Query: 5 GLVKAFLN--------EWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTN 56
GLV +F E C+ NS+ P QRF+C+ +I Y G G+
Sbjct: 10 GLVNSFAQKKKLSVNYEQCEPNSELP------------QRFICKCKIGQTMY-GTGSGVT 56
Query: 57 KKDAQTNAAKDFVQYLVRS 75
K++A+ AAK+ Q L++S
Sbjct: 57 KQEAKQLAAKEAYQKLLKS 75
>pdb|1UIL|A Chain A, Double-Stranded Rna-Binding Motif Of Hypothetical Protein
Bab28848
pdb|2RS7|A Chain A, Solution Structure Of The Second Dsrbd From Rna Helicase A
Length = 113
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 29 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 88
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 89 CALSLVRQLYHLGVI 103
>pdb|2CPN|A Chain A, Solution Structure Of The Second Dsrbd Of Tar
Rna-Binding Protein 2
Length = 89
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA +
Sbjct: 28 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAAAKML 80
>pdb|3ADL|A Chain A, Structure Of Trbp2 And Its Molecule Implications For
Mirna Processing
Length = 88
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 3 GDGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
G V A QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+
Sbjct: 14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAK 71
Query: 62 TNAAKDFV 69
NAA +
Sbjct: 72 RNAAAKML 79
>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 6 LVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
+ K+ L E+ QK P +++ GP H+ F + + G+ Y N+K A+ +A
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 65 AKDFVQYLVRSGQVNE 80
A+ ++ L +S ++++
Sbjct: 78 AEVALRELAKSSELSQ 93
>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 3 GDGLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
G + K+ L E+ QK P +++ GP H+ F + + G+ Y N+K A+
Sbjct: 1 GSHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE 60
Query: 62 TNAAK 66
+AA+
Sbjct: 61 QSAAE 65
>pdb|1DI2|A Chain A, Crystal Structure Of A Dsrna-Binding Domain Complexed
With Dsrna: Molecular Basis Of Double-Stranded
Rna-Protein Interactions
pdb|1DI2|B Chain B, Crystal Structure Of A Dsrna-Binding Domain Complexed
With Dsrna: Molecular Basis Of Double-Stranded
Rna-Protein Interactions
Length = 69
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
QK + PE+ V + +GP H++ F R+ +V G+ T+K+ A+ AA+ +
Sbjct: 12 QKGWRLPEYTVAQESGPPHKREFTITCRVE--TFVETGSGTSKQVAKRVAAEKLL 64
>pdb|3RJL|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|F Chain F, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|G Chain G, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|H Chain H, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
Length = 538
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 51 AGNSTNKKDAQTNAAKDFVQY-------LVRSGQVNERDVPVENIPMTPTGPSVTV 99
AG N+ DA T A DF++Y L + VN R+ TPTG +V +
Sbjct: 124 AGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVI 179
>pdb|2DVT|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVU|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVX|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
Length = 327
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 46 IGYVGA--GNSTNKKDAQTNAAKDFVQYLVRSGQVNERDVPVENIPMTP 92
+G+VGA + + D QT D QY G+V + DVP P P
Sbjct: 120 LGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRNP 168
>pdb|2LJH|A Chain A, Nmr Structure Of Double-Stranded Rna-Specific Editase Adar
Length = 114
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 30 GPKHRQRFLCELRIAGIGYVGAGNSTN--KKDAQTNAAKDFVQY 71
GP H F + + G Y+G G S + +A A + F+Q+
Sbjct: 59 GPVHAPLFTISVEVDGQKYLGQGRSKKVARIEAAATALRSFIQF 102
>pdb|2HTM|A Chain A, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|B Chain B, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|C Chain C, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|D Chain D, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
Length = 268
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 84 PVENIPMTPTGP 95
PVE +P TPTGP
Sbjct: 250 PVEGVPFTPTGP 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,418,551
Number of Sequences: 62578
Number of extensions: 119990
Number of successful extensions: 197
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 25
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)