BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14233
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P24785|MLE_DROME Dosage compensation regulator OS=Drosophila melanogaster GN=mle
PE=2 SV=2
Length = 1293
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K+FL ++C K+ +P+FD+R GPK+RQRFLCE+R+ Y+G GNSTNKKDA+ NA +
Sbjct: 3 IKSFLYQFCAKSQIEPKFDIRQTGPKNRQRFLCEVRVEPNTYIGVGNSTNKKDAEKNACR 62
Query: 67 DFVQYLVRSGQVNERDVPVE 86
DFV YLVR G++N DVP +
Sbjct: 63 DFVNYLVRVGKLNTNDVPAD 82
>sp|Q68FK8|DHX9_XENLA ATP-dependent RNA helicase A-like protein OS=Xenopus laevis
GN=dhx9 PE=2 SV=1
Length = 1262
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 59/78 (75%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P +++RAAG K+RQ+F+CE+RI G Y+G GNSTNKKDAQTN+A+
Sbjct: 4 IKNFLYAWCGKKKLTPNYEIRAAGNKNRQKFMCEVRIDGFNYIGMGNSTNKKDAQTNSAR 63
Query: 67 DFVQYLVRSGQVNERDVP 84
DFV YLVR G++ +VP
Sbjct: 64 DFVNYLVRVGEMRSDEVP 81
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ + G + + +NKK A +
Sbjct: 185 KARLNQFFQKEKTQGEYKYSQVGPDHNRSFIAEMTLYVKQLGRKIIAREHGSNKKLAAQS 244
Query: 64 AAKDFVQYL 72
A V+ L
Sbjct: 245 CALSIVRQL 253
>sp|Q28141|DHX9_BOVIN ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1
Length = 1287
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVRVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENIPMTPTGPSVT 98
A+DFV YLVR ++ +VP + + P PS T
Sbjct: 62 ARDFVNYLVRINELKSEEVPA--VGVAPPTPSAT 93
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 179 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQIGRRIFAREHGSNKKLAAQS 238
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 239 CALSLVRQLYHLGVI 253
>sp|O70133|DHX9_MOUSE ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2
Length = 1380
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI 88
A+DFV YLVR +V +VP I
Sbjct: 62 ARDFVNYLVRINEVKSEEVPAVGI 85
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 184 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 243
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G +
Sbjct: 244 CALSLVRQLYHLGVI 258
>sp|Q5R874|DHX9_PONAB ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1
Length = 1269
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>sp|Q08211|DHX9_HUMAN ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4
Length = 1270
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
G VK FL WC K P +++RA G K+RQ+F+CE+++ G Y G GNSTNKKDAQ+NA
Sbjct: 2 GDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNA 61
Query: 65 AKDFVQYLVRSGQVNERDVPVENI----PMTPTGPSVTVN 100
A+DFV YLVR ++ +VP + P+T T P T N
Sbjct: 62 ARDFVNYLVRINEIKSEEVPAFGVASPPPLTDT-PDTTAN 100
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 182 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 241
Query: 64 AAKDFVQYLVRSGQV 78
A V+ L G V
Sbjct: 242 CALSLVRQLYHLGVV 256
>sp|Q22307|DHX9_CAEEL Probable ATP-dependent RNA helicase A OS=Caenorhabditis elegans
GN=rha-1 PE=2 SV=3
Length = 1301
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 1 MSGDGLVKAFLNEWCQKNSK-QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKD 59
MS D VK FL W KN P +D ++ RQRF CELRI G GY GNSTNKKD
Sbjct: 1 MSRD--VKEFLYAWLGKNKYGNPTYDTKSETRSGRQRFKCELRITGFGYTAFGNSTNKKD 58
Query: 60 AQTNAAKDFVQYLVRSGQVNERDVP 84
A TNAA+DF QYLVR G++ + D+P
Sbjct: 59 AATNAAQDFCQYLVREGKMQQSDIP 83
>sp|O67082|RNC_AQUAE Ribonuclease 3 OS=Aquifex aeolicus (strain VF5) GN=rnc PE=1 SV=1
Length = 221
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYLVRS 75
++ ++ L S
Sbjct: 211 EELIKLLEES 220
>sp|Q6NGH3|RNC_CORDI Ribonuclease 3 OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=rnc PE=3 SV=1
Length = 249
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 14 WCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
++N + P + GP+H Q F E+ + G +G G TNKK A+ AA V +L
Sbjct: 185 LAERNLEMPTYTSTVTGPEHEQTFTAEVAVHGT-VLGTGVGTNKKLAEQAAAHKAVGFL 242
>sp|B6J4J9|RNC_COXB1 Ribonuclease 3 OS=Coxiella burnetii (strain CbuK_Q154) GN=rnc PE=3
SV=1
Length = 233
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>sp|B6IYZ9|RNC_COXB2 Ribonuclease 3 OS=Coxiella burnetii (strain CbuG_Q212) GN=rnc PE=3
SV=1
Length = 233
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>sp|A9KFA0|RNC_COXBN Ribonuclease 3 OS=Coxiella burnetii (strain Dugway 5J108-111)
GN=rnc PE=3 SV=1
Length = 233
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>sp|P51837|RNC_COXBU Ribonuclease 3 OS=Coxiella burnetii (strain RSA 493 / Nine Mile
phase I) GN=rnc PE=3 SV=2
Length = 233
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>sp|A9N942|RNC_COXBR Ribonuclease 3 OS=Coxiella burnetii (strain RSA 331 / Henzerling
II) GN=rnc PE=3 SV=1
Length = 233
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 8 KAFLNEWCQ-KNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L EW Q + P ++V+ G H Q F + G+ + G +T ++ A+ AAK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 67 DFVQYLV--RSGQVNERD 82
F++ L + + ERD
Sbjct: 215 RFLELLDDGKGDGITERD 232
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVR--AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
GL K L E+ QK N P + A+G FLC + I GI Y+GA T KKDA+
Sbjct: 119 GLCKNLLQEYAQKMNYAIPSYICTKPASG---LAPFLCTVEIGGIQYIGAAART-KKDAE 174
Query: 62 TNAAK 66
AA+
Sbjct: 175 IKAAR 179
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 6 LVKAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
+ K+ L E+ QK Q PE+ GP H F + I Y +N+K A+ +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 65 AKDFVQYLVRSGQVN 79
A+ + +V+S N
Sbjct: 95 AEVALMEIVKSIPAN 109
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V +GP H++ F +R+AG Y G+G +KK+A+ AA+
Sbjct: 180 PEYVVEESGPDHQKTFRATVRVAGQTY-GSGEGRSKKEAEQQAAE 223
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 117 GLCKNLLQEYAQKMNYAIPSY-ICTKSASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 174
Query: 64 AAK 66
AA+
Sbjct: 175 AAR 177
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 6 LVKAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
+ K+ L E+ QK Q PE+ GP H F + I Y N+K A+ +A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 65 AKDFVQYLVRSGQVN 79
A+ + +V+S N
Sbjct: 93 AEVALMEIVKSIPAN 107
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
GL K L E+ QK N P + + F+C + I GI Y+GA T KKDA+
Sbjct: 117 GLCKNLLQEYAQKMNYAIPSY-ICTKSASGLAPFICTVEIGGIQYIGAAART-KKDAEIK 174
Query: 64 AAK 66
AA+
Sbjct: 175 AAR 177
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 6 LVKAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
+ K+ L E+ QK Q PE+ GP H F + I Y N+K A+ +A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 65 AKDFVQYLVRSGQVN 79
A+ + +V+S N
Sbjct: 93 AEVALMEIVKSIPAN 107
>sp|P74368|RNC1_SYNY3 Ribonuclease 3 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=rnc1 PE=3 SV=1
Length = 231
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 7 VKAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNA 64
VK+ L +W +KQ PE++ + +GP H Q F +++AG + G G+ +K+ A A
Sbjct: 161 VKSMLQQWALAKTKQLPEYELINTSGPPHAQEFTFTVKVAGKIH-GQGSGPSKQIATKQA 219
Query: 65 AKDFVQYL 72
A + ++ L
Sbjct: 220 ALEALKSL 227
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 5 GLVKAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E + K P + +GP H F C + +AG+ + G T KK AQ N
Sbjct: 86 GIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFTCTVELAGMTFTGNPGKT-KKQAQKN 144
Query: 64 AAK---DFVQYLVRSGQVNERDVPVEN 87
AA ++ L R G+ + P ++
Sbjct: 145 AAMAAWSELKQLPRVGEPSSSSCPPDH 171
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 191 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 234
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
PE+ V GP H + F R+ G+ Y G G +KK+A+ AA+
Sbjct: 201 PEYLVTETGPDHEKTFTAAARVGGVSY-GTGTGRSKKEAEQQAAE 244
>sp|Q91836|PRKAB_XENLA Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog B OS=Xenopus laevis GN=prkra-b PE=1
SV=1
Length = 298
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP H++ F R+ +V G+ T+K+ A+ AA+ + L +
Sbjct: 123 QKGWRLPEYTVAQESGPPHKREFTITCRVE--TFVETGSGTSKQVAKRVAAE---KLLTK 177
Query: 75 SGQVNERDVPVENI---PMTPTGPSVTVNTSKRFSFIRRSSIGLPRS 118
++ ++P+ + M T S+ ++ ++ S ++RS + +P +
Sbjct: 178 FKTISTDNIPLNKLIGNKMGCTWDSMRNSSGEKISMLKRSPLSIPNT 224
>sp|Q7ZYA5|PRKAA_XENLA Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog A OS=Xenopus laevis GN=prkra-a PE=2
SV=1
Length = 309
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP H++ F R+ +V G+ T+K+ A+ AA+ + L +
Sbjct: 134 QKGWRLPEYTVAQESGPPHKREFTITCRVE--TFVETGSGTSKQVAKRVAAE---KLLTK 188
Query: 75 SGQVNERDVPVENI---PMTPTGPSVTVNTSKRFSFIRRSSIGLPRS 118
++ ++P+ + M T S+ ++ ++ S ++RS + +P +
Sbjct: 189 FKTISTDNIPLNKLIGNKMGCTWDSMRNSSGEKISMLKRSPLSIPNT 235
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTN 63
G+ K L E Q+ + P + +G H F C + +AGI + G + NKK A+ N
Sbjct: 86 GVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKN 144
Query: 64 AA 65
AA
Sbjct: 145 AA 146
>sp|Q4SS66|TRBP2_TETNG RISC-loading complex subunit tarbp2 OS=Tetraodon nigroviridis
GN=tarbp2 PE=3 SV=1
Length = 345
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + +
Sbjct: 151 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAAAKMLSRI-- 206
Query: 75 SGQVNERDVPVE 86
DVPV+
Sbjct: 207 ------HDVPVD 212
>sp|Q7SXR1|TRBP2_DANRE RISC-loading complex subunit tarbp2 OS=Danio rerio GN=tarbp2 PE=2
SV=1
Length = 346
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + +
Sbjct: 150 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSG--TSKKLAKRNAAAKMLSRI-- 205
Query: 75 SGQVNERDVPVE 86
DVPV+
Sbjct: 206 ------HDVPVD 211
>sp|Q8A2E8|RNC_BACTN Ribonuclease 3 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 /
DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=rnc PE=3 SV=2
Length = 311
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQR--FLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ H F E+RI G+ G G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQFLDHDSNPVFQTEVRIEGLP-AGTGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>sp|Q5LIS2|RNC_BACFN Ribonuclease 3 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC
9343) GN=rnc PE=3 SV=1
Length = 290
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ ++ ++ F E+RI GI G+G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGI-LGGSGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>sp|Q64ZV9|RNC_BACFR Ribonuclease 3 OS=Bacteroides fragilis (strain YCH46) GN=rnc PE=3
SV=1
Length = 290
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDV--RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K+ L EW QKN + F++ ++ ++ F E+RI GI G+G +KK++Q NAA
Sbjct: 175 KSKLIEWSQKNKMEVSFELIEQSLDKENNPVFQTEVRIEGI-LGGSGTGYSKKESQQNAA 233
Query: 66 K 66
+
Sbjct: 234 Q 234
>sp|Q5BJ52|TRBP2_XENTR RISC-loading complex subunit tarbp2 OS=Xenopus tropicalis GN=tarbp2
PE=2 SV=2
Length = 351
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + + R
Sbjct: 161 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFLEIGSG--TSKKLAKRNAAAKMLLQIHR 218
>sp|B4U7T8|RNC_HYDS0 Ribonuclease 3 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rnc PE=3
SV=1
Length = 232
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAA-GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ P ++V + GP+HR+ F E + G GNS KK A+ AA
Sbjct: 160 KTALQEITQKKWKERPIYNVISVEGPEHRKTFTVECLFKDLRTTGKGNS--KKYAEQEAA 217
Query: 66 KDFVQYL 72
K+ +Q +
Sbjct: 218 KNMLQII 224
>sp|Q91FI4|340R_IIV6 DRBM domain-containing protein 340R OS=Invertebrate iridescent
virus 6 GN=IIV6-340R PE=4 SV=1
Length = 173
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 9 AFLNEWCQKNSKQP--EFDVRAAGPKHRQRFLCELRIAGI----GYVGAGNSTNKKDAQT 62
FLNE+C KN +P + GP H F E RI ++G+G S K+A+
Sbjct: 33 GFLNEFCHKNKYKPPSYTTLNQNGPDHSPTFNIECRIVDYKPNGKFIGSGLSM--KEAKK 90
Query: 63 NAA 65
NAA
Sbjct: 91 NAA 93
>sp|Q03963|E2AK2_MOUSE Interferon-induced, double-stranded RNA-activated protein kinase
OS=Mus musculus GN=Eif2ak2 PE=1 SV=2
Length = 515
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 21/79 (26%)
Query: 5 GLVKAFLN--------EWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTN 56
GLV +F E C+ NS+ P QRF+C+ +I Y G G+
Sbjct: 98 GLVNSFAQKKKLSVNYEQCEPNSELP------------QRFICKCKIGQTMY-GTGSGVT 144
Query: 57 KKDAQTNAAKDFVQYLVRS 75
K++A+ AAK+ Q L++S
Sbjct: 145 KQEAKQLAAKEAYQKLLKS 163
>sp|Q6GPZ1|TRBP2_XENLA RISC-loading complex subunit tarbp2 OS=Xenopus laevis GN=tarbp2
PE=2 SV=2
Length = 351
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA +
Sbjct: 161 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFLEIGSG--TSKKLAKRNAAAKML 213
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 5 GLVKAFLNEWCQK-NSKQPEFDVRAAGPKHR-QRFLCELRIAGIGYVGAGNSTNKKDAQT 62
GL K L E+ QK N P + + R +F C + I GI Y GA T KKDA+
Sbjct: 100 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KKDAEI 158
Query: 63 NAAK 66
+A +
Sbjct: 159 SAGR 162
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 8 KAFLNEWCQKNS-KQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L E+ QK P +++ GP H+ F + + G+ Y N+K A+ +AA+
Sbjct: 17 KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 76
Query: 67 DFVQYLVRSGQVNE 80
++ L +S ++++
Sbjct: 77 VALRELAKSSELSQ 90
>sp|Q15633|TRBP2_HUMAN RISC-loading complex subunit TARBP2 OS=Homo sapiens GN=TARBP2 PE=1
SV=3
Length = 366
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA + V
Sbjct: 170 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAAAKML-LRVH 226
Query: 75 SGQVNERD 82
+ ++ RD
Sbjct: 227 TVPLDARD 234
>sp|P33863|E3_VAR67 Protein E3 OS=Variola virus (isolate Human/India/Ind3/1967) GN=E3L
PE=3 SV=1
Length = 190
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 10 FLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+CQ + F + + GP + F + I G + + +K+DA+ NAAK V
Sbjct: 121 IINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVF-DKADGKSKRDAKNNAAKLAV 179
Query: 70 QYLV 73
L+
Sbjct: 180 DKLL 183
>sp|P21081|E3_VACCC Protein E3 OS=Vaccinia virus (strain Copenhagen) GN=E3L PE=2 SV=1
Length = 190
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 10 FLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
+NE+CQ + F + + GP + F + I G + A + +K+DA+ NAAK V
Sbjct: 121 IINEYCQITKRDWSFRIESVGPSNSPTFYACVDIDGRVFDKA-DGKSKRDAKNNAAKLAV 179
Query: 70 QYLV 73
L+
Sbjct: 180 DKLL 183
>sp|Q0IIG6|TRBP2_BOVIN RISC-loading complex subunit TARBP2 OS=Bos taurus GN=TARBP2 PE=2
SV=2
Length = 366
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA +
Sbjct: 170 QKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAAAKML 222
>sp|Q895M9|RNC_CLOTE Ribonuclease 3 OS=Clostridium tetani (strain Massachusetts / E88)
GN=rnc PE=3 SV=1
Length = 235
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 26 VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQ 70
++ GP HR++F E++I +G G +KK+++ NAAK ++
Sbjct: 183 IKHEGPPHRRKFYTEVKIKD-NVLGYGIGYSKKESEQNAAKKAIE 226
>sp|P21605|E3_VACCW Protein E3 OS=Vaccinia virus (strain Western Reserve) GN=VACWR059
PE=1 SV=1
Length = 190
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQ 70
+NE+CQ + F + + GP + F + I G + A + +K+DA+ NAAK V
Sbjct: 122 INEYCQITRRDWSFRIESVGPSNSPTFYACVDIDGRVFDKA-DGKSKRDAKNNAAKLAVD 180
Query: 71 YLV 73
L+
Sbjct: 181 KLL 183
>sp|Q3SWU0|TRBP2_RAT RISC-loading complex subunit TARBP2 OS=Rattus norvegicus GN=Tarbp2
PE=2 SV=1
Length = 365
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA +
Sbjct: 169 QKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAAAKML 221
>sp|B2TJ22|RNC_CLOBB Ribonuclease 3 OS=Clostridium botulinum (strain Eklund 17B / Type
B) GN=rnc PE=3 SV=1
Length = 232
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 11 LNEWCQKNSK---QPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
L E QK+ + Q E V+ GP HR++F + I +G G +KK+A+ NAAK+
Sbjct: 165 LQELLQKDGEILIQYEL-VKYEGPPHRRKFFTNV-IINEKVMGIGEGYSKKEAEQNAAKE 222
Query: 68 FVQYL 72
++ L
Sbjct: 223 ALKRL 227
>sp|B0V3F8|PRKRA_DANRE Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog OS=Danio rerio GN=prkra PE=2 SV=2
Length = 282
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 14 WCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV--- 69
WC PE+ V GP H + F R+ G+ G+G+S KK A+ AA++ +
Sbjct: 113 WCL-----PEYVVFMETGPGHMKEFTIACRLEGLEETGSGSS--KKLARRAAAENMIAKL 165
Query: 70 QYLVRSGQVNERDVPVENIPMTPTGPSVTVNTSKRFSFIRRSSIGLPRS 118
Q L S ++ P S+ +T ++ S ++R+ + LP +
Sbjct: 166 QSLSGSSEITWSP------PSRVYVESLRNSTGEKVSLLKRTPLSLPNT 208
>sp|Q57794|Y348_METJA Uncharacterized protein MJ0348 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0348 PE=4 SV=2
Length = 795
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 34 RQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD-------FVQYLVRSGQVNERDVPVE 86
RQ++ L I Y GN T+K T+A D V+ ++ Q N DVP+E
Sbjct: 511 RQKYCHSLSIEAKTYDKEGNETDKFPHPTSADYDENKHSEIIVKIKIKDEQGNYIDVPIE 570
Query: 87 NIPMTPTGPSVTVNT 101
NI + P +NT
Sbjct: 571 NIFINWQYPLNKINT 585
>sp|P97473|TRBP2_MOUSE RISC-loading complex subunit TARBP2 OS=Mus musculus GN=Tarbp2 PE=1
SV=2
Length = 365
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 QKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
QK + PE+ V + +GP HR+ F R+ +G+G T+KK A+ NAA +
Sbjct: 169 QKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGSG--TSKKLAKRNAAAKML 221
>sp|Q4JUY7|RNC_CORJK Ribonuclease 3 OS=Corynebacterium jeikeium (strain K411) GN=rnc
PE=3 SV=1
Length = 244
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 22 PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNER 81
P ++VR GP+H + F + I + G G++ KK A+ AAK VQ ++NER
Sbjct: 192 PTYEVRGEGPEHDKTFYATVTIEDLVTHGEGHT--KKVAEHAAAKQAVQ------KLNER 243
>sp|A8F397|RNC_THELT Ribonuclease 3 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM
14385 / TMO) GN=rnc PE=3 SV=1
Length = 238
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 8 KAFLNEWCQ-KNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E Q + K PE+ V GP H ++F ELR++G + G + K+A+ AA
Sbjct: 170 KTSLQEITQARYRKLPEYVLVNEKGPSHMKKFTVELRLSG-KLIAVGEGPSIKEAEKEAA 228
Query: 66 KDFVQYL 72
+ ++ L
Sbjct: 229 RRAIEKL 235
>sp|A4J683|RNC_DESRM Ribonuclease 3 OS=Desulfotomaculum reducens (strain MI-1) GN=rnc
PE=3 SV=1
Length = 246
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 8 KAFLNEWCQKNSKQP-EFDVR-AAGPKHRQRFLCELRIAGIGY----VGAGNSTNKKDAQ 61
K L E Q++S P + + +GP H + F AG+ Y +G G+ +KK+A+
Sbjct: 166 KTELQEILQQSSPDPLTYTIMDESGPDHDKTF-----TAGVIYKGKVIGKGSGHSKKEAE 220
Query: 62 TNAAKDFVQYLVRSGQVNER 81
AAKD Q+L G+ +
Sbjct: 221 QQAAKDAFQHLEGMGKSGHK 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,051,132
Number of Sequences: 539616
Number of extensions: 1720508
Number of successful extensions: 3700
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 3655
Number of HSP's gapped (non-prelim): 130
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)