Query psy14233
Match_columns 122
No_of_seqs 139 out of 1113
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:48:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whq_A RNA helicase A; double- 99.9 8.4E-26 2.9E-30 153.4 11.7 86 2-87 3-88 (99)
2 3adg_A F21M12.9 protein; HYL1, 99.9 1.2E-23 4E-28 134.9 10.4 70 3-73 1-72 (73)
3 3adj_A F21M12.9 protein; HYL1, 99.9 7.3E-23 2.5E-27 132.3 9.6 68 5-73 4-73 (76)
4 1uhz_A Staufen (RNA binding pr 99.9 3E-22 1E-26 133.4 11.2 70 2-73 3-74 (89)
5 3llh_A RISC-loading complex su 99.9 2.1E-22 7.1E-27 134.2 9.7 73 4-78 13-86 (90)
6 2dix_A Interferon-inducible do 99.9 5.7E-22 1.9E-26 130.6 11.2 69 4-74 7-76 (84)
7 1di2_A XLRBPA, double stranded 99.9 3.6E-22 1.2E-26 126.6 9.6 66 6-73 1-68 (69)
8 3adl_A RISC-loading complex su 99.9 9.5E-22 3.3E-26 130.7 11.6 68 4-73 14-83 (88)
9 2cpn_A TAR RNA-binding protein 99.9 6.9E-22 2.4E-26 131.6 11.0 69 4-74 15-85 (89)
10 1x49_A Interferon-induced, dou 99.9 5.4E-22 1.8E-26 134.1 9.7 73 4-77 13-86 (97)
11 1x48_A Interferon-induced, dou 99.9 1.5E-21 5.1E-26 129.7 11.7 72 2-75 3-75 (88)
12 2l2n_A Hyponastic leave 1; DSR 99.9 5.6E-22 1.9E-26 135.2 8.9 74 3-77 15-90 (103)
13 2khx_A Ribonuclease 3; drosha, 99.9 1.9E-22 6.3E-27 133.3 6.3 68 5-73 1-75 (85)
14 1uil_A Double-stranded RNA-bin 99.9 2.2E-21 7.5E-26 134.3 10.8 76 5-81 26-106 (113)
15 1t4n_A Ribonuclease III; DSRBD 99.9 4.4E-22 1.5E-26 134.0 6.9 70 4-73 5-74 (94)
16 1ekz_A DSRBDIII, maternal effe 99.9 2.9E-22 1E-26 129.3 5.7 67 4-73 6-74 (76)
17 2b7t_A Double-stranded RNA-spe 99.9 2.2E-21 7.5E-26 124.4 9.4 68 4-74 3-71 (73)
18 1t4o_A Ribonuclease III; RNT1P 99.8 5.9E-21 2E-25 132.9 8.2 70 4-73 7-76 (117)
19 2dmy_A Spermatid perinuclear R 99.8 1.6E-20 5.4E-25 126.7 9.7 67 4-73 15-82 (97)
20 1x47_A DGCR8 protein; structur 99.8 7.5E-20 2.6E-24 123.7 10.4 68 3-73 14-83 (98)
21 2l33_A Interleukin enhancer-bi 99.8 6.7E-20 2.3E-24 122.6 8.5 66 5-73 14-80 (91)
22 2ljh_A Double-stranded RNA-spe 99.8 1.5E-19 5.1E-24 125.4 9.7 65 3-73 35-100 (114)
23 1whn_A Hypothetical protein ri 99.8 5.3E-19 1.8E-23 124.9 12.0 67 4-73 25-93 (128)
24 2b7v_A Double-stranded RNA-spe 99.8 7.7E-19 2.6E-23 111.8 9.9 66 3-74 2-68 (71)
25 1qu6_A Protein kinase PKR; dsR 99.8 4.8E-19 1.7E-23 130.3 7.3 72 4-76 12-84 (179)
26 3p1x_A Interleukin enhancer-bi 99.7 1.8E-17 6E-22 106.8 10.0 66 3-74 5-71 (75)
27 1o0w_A Ribonuclease III, RNAse 99.7 1.7E-17 5.7E-22 127.7 10.2 70 4-74 178-249 (252)
28 2nug_A Ribonuclease III, RNAse 99.7 1.9E-17 6.4E-22 124.9 9.6 68 4-73 149-218 (221)
29 2yt4_A Protein DGCR8; DSRBD, R 99.7 1.2E-16 3.9E-21 122.2 10.8 68 4-74 21-90 (232)
30 1qu6_A Protein kinase PKR; dsR 99.7 5.7E-17 1.9E-21 119.2 8.7 71 4-75 103-173 (179)
31 2a11_A Ribonuclease III, RNAse 99.7 8.8E-18 3E-22 128.3 0.0 72 4-76 161-233 (242)
32 3n3w_A Ribonuclease III; nucle 99.6 1.7E-17 5.9E-22 127.7 0.0 69 4-73 176-246 (248)
33 2l3j_A Double-stranded RNA-spe 99.6 3.4E-15 1.2E-19 114.2 10.0 66 4-75 160-226 (236)
34 2l3j_A Double-stranded RNA-spe 99.6 1.3E-14 4.3E-19 111.0 10.4 70 3-75 2-72 (236)
35 2yt4_A Protein DGCR8; DSRBD, R 99.5 1E-14 3.5E-19 111.4 7.3 66 4-74 129-198 (232)
36 3rv0_A K. polysporus DCR1; RNA 99.3 1.3E-13 4.5E-18 110.6 0.0 65 4-74 253-320 (341)
37 3c4b_A Endoribonuclease dicer; 99.2 3.2E-11 1.1E-15 92.7 8.2 65 7-74 199-263 (265)
38 2kou_A Dicer-like protein 4; A 98.1 2E-05 7E-10 53.0 8.9 79 4-85 3-91 (102)
39 2db2_A KIAA0890 protein; DSRM 96.9 0.0037 1.3E-07 42.8 7.2 79 4-86 16-101 (119)
40 3htx_A HEN1; HEN1, small RNA m 96.2 0.0085 2.9E-07 53.4 6.3 66 5-74 17-95 (950)
41 3k6q_A Putative ligand binding 71.4 12 0.00042 26.0 6.1 56 8-73 41-96 (139)
42 2qvw_A GLP_546_48378_50642; di 53.9 2.3 7.9E-05 37.1 -0.4 42 4-74 446-497 (756)
43 2gjh_A Designed protein; oblig 46.2 12 0.00043 21.8 2.0 25 52-77 8-32 (62)
44 1mp9_A Tata-binding protein; t 39.6 56 0.0019 23.7 5.2 41 34-77 56-96 (198)
45 2qv6_A MJ0145, GTP cyclohydrol 37.6 37 0.0013 25.9 4.1 26 49-75 214-239 (268)
46 1ytb_A Protein (tata binding p 37.3 69 0.0023 22.8 5.3 41 34-77 48-88 (180)
47 3eik_A Tata-box-binding protei 34.5 83 0.0029 23.2 5.5 41 34-77 86-126 (218)
48 2z8u_A Tata-box-binding protei 31.2 1.1E+02 0.0039 21.8 5.7 42 33-77 55-96 (188)
49 1rm1_A Tata-box binding protei 29.4 1.2E+02 0.0042 22.6 5.7 41 34-77 108-148 (240)
50 1qys_A TOP7; alpha-beta, novel 28.4 33 0.0011 21.9 2.0 26 51-77 51-76 (106)
51 1ais_A TBP, protein (tata-bind 25.4 1.4E+02 0.0047 21.2 5.2 41 34-77 52-92 (182)
52 3jtz_A Integrase; four strande 25.0 1.3E+02 0.0044 18.6 5.7 37 29-65 30-69 (88)
53 3htx_A HEN1; HEN1, small RNA m 21.9 1.2E+02 0.0043 27.2 5.1 70 4-73 393-502 (950)
No 1
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.93 E-value=8.4e-26 Score=153.35 Aligned_cols=86 Identities=52% Similarity=0.972 Sum_probs=79.4
Q ss_pred CCCCChHHHHHHHHHhcCCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy14233 2 SGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNER 81 (122)
Q Consensus 2 ~~~~n~ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~~~~~ 81 (122)
++..|||+.||||||+++..|+|++...||+|.++|+|.|.|+|..+++.|.|+|||+|||.||+.||+.|...+.+..+
T Consensus 3 ~g~~d~Kt~LqE~~Qk~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~~~ 82 (99)
T 1whq_A 3 SGSSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSE 82 (99)
T ss_dssp CCCCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTSSCTT
T ss_pred CCCCCHHHHHHHHHHHCCCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 67899999999999999778999997789999999999999999324799999999999999999999999999999999
Q ss_pred CCCCCC
Q psy14233 82 DVPVEN 87 (122)
Q Consensus 82 ~~p~~~ 87 (122)
+.|...
T Consensus 83 ~~P~~~ 88 (99)
T 1whq_A 83 EVPAVG 88 (99)
T ss_dssp TSCCCC
T ss_pred cCCCcC
Confidence 999865
No 2
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.90 E-value=1.2e-23 Score=134.92 Aligned_cols=70 Identities=26% Similarity=0.419 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHhc-CCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEec-cCHHHHHHHHHHHHHHHHH
Q psy14233 3 GDGLVKAFLNEWCQKN-SKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNS-TNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 3 ~~~n~ks~L~E~~qk~-~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G-~SKK~Aeq~AA~~Al~~L~ 73 (122)
|..|||+.||||||++ +..|.|++...||+|++.|+|.|.|+|.. ++.|.| .|||+||+.||+.||+.|.
T Consensus 1 ~~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~-~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 1 GSHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVR-YNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp -CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEE-EECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEE-EEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 4689999999999999 77899998766999999999999999974 799999 9999999999999999883
No 3
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.89 E-value=7.3e-23 Score=132.31 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHhc-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 5 GLVKAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 5 ~n~ks~L~E~~qk~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
.|||+.||||||++ +..|.|++ ...||+|++.|+|.|.|+|.. ++.|.|+|||+||+.||+.||+.|.
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIK-YTGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEE-EECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEE-EEEeccCCHHHHHHHHHHHHHHHHh
Confidence 68999999999999 67899997 578999999999999999974 7999999999999999999999995
No 4
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.88 E-value=3e-22 Score=133.38 Aligned_cols=70 Identities=27% Similarity=0.381 Sum_probs=64.8
Q ss_pred CCCCChHHHHHHHHHhc-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 2 SGDGLVKAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 2 ~~~~n~ks~L~E~~qk~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
++..|||+.||||||++ +..|.|++ ...||+|++.|+|.|.|+|. ++.|.|.|||+||+.||+.||+.|.
T Consensus 3 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~--~~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (89)
T 1uhz_A 3 SGSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE--VATGTGPNKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp CSSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE--EEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 46789999999999999 67899997 56899999999999999995 6999999999999999999999994
No 5
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=134.19 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=58.8
Q ss_pred CCChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCCC
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQV 78 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~~ 78 (122)
..|||+.||||||+++..|.|++ ...||+|+++|+|.|.|+|. ++.|.|+|||+||+.||+.||+.|...+.+
T Consensus 13 ~kd~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~--~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~ 86 (90)
T 3llh_A 13 GKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDT--SCTGQGPSKKAAKHKAAEVALKHLKGGSML 86 (90)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEC-----CCEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHhcCCCCEEEEEEeECCCCCCcEEEEEEECCE--EEEEEeCCHHHHHHHHHHHHHHHHHhcccc
Confidence 57999999999999877899997 57899999999999999996 599999999999999999999999765443
No 6
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.88 E-value=5.7e-22 Score=130.56 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=64.1
Q ss_pred CCChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
..|||+.||||||+++..|.|++ .+.||+|.++|+|.|.|+| . ++.|.|.|||+||+.||+.||+.|..
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~-~~~G~G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD-I-TCTGEGTSKKLAKHRAAEAAINILKA 76 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT-E-EEEECSSCTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeECCCCCCeEEEEEEECC-E-EEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 47999999999999977899997 5689999999999999999 4 69999999999999999999999964
No 7
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.88 E-value=3.6e-22 Score=126.60 Aligned_cols=66 Identities=26% Similarity=0.441 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHhc-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 6 LVKAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 6 n~ks~L~E~~qk~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
.||+.||||||++ +..|.|++ ...||+|++.|+|.|.|+|. ++.|.|.|||+||+.||+.||+.|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~--~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF--VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE--EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 3899999999999 67899997 56899999999999999995 6999999999999999999999984
No 8
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.87 E-value=9.5e-22 Score=130.72 Aligned_cols=68 Identities=28% Similarity=0.425 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHhc-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..|||+.||||||++ +..|.|++ ...||+|.+.|+|.|.|+|. ++.|.|+|||+||+.||+.||+.|.
T Consensus 14 ~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~--~~~G~G~SKK~Aeq~AA~~AL~~L~ 83 (88)
T 3adl_A 14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF--IEIGSGTSKKLAKRNAAAKMLLRVH 83 (88)
T ss_dssp TCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE--EEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999 67899997 56899999999999999995 6999999999999999999999995
No 9
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.87 E-value=6.9e-22 Score=131.59 Aligned_cols=69 Identities=28% Similarity=0.415 Sum_probs=63.9
Q ss_pred CCChHHHHHHHHHhc-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
..|||+.||||||++ +..|.|++ ...||+|.+.|+|.|.|+|. ++.|.|.|||+||+.||+.||+.|..
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~--~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF--IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE--EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 469999999999999 77899997 57899999999999999995 69999999999999999999999963
No 10
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.87 E-value=5.4e-22 Score=134.07 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
..|||+.||||||+++..|.|++ ...||+|.+.|+|.|.|+|+. ++.|.|.|||+|||.||+.||+.|..+..
T Consensus 13 ~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 86 (97)
T 1x49_A 13 PGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKE-FPEAKGRSKQEARNAAAKLAVDILDNENK 86 (97)
T ss_dssp TTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCC-CCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEECCEE-EEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence 46999999999999954599996 578999999999999999974 79999999999999999999999964433
No 11
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.87 E-value=1.5e-21 Score=129.66 Aligned_cols=72 Identities=26% Similarity=0.432 Sum_probs=64.9
Q ss_pred CCCCChHHHHHHHHHhcCCCceEEEEeeCCCCCc-cEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHc
Q psy14233 2 SGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQ-RFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRS 75 (122)
Q Consensus 2 ~~~~n~ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~-~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~ 75 (122)
++..|||+.||||||+++..+.|+ ...||+|++ +|+|.|.|+|.. ++.|.|.|||+|||.||+.||+.|...
T Consensus 3 ~~~~d~Kt~LqE~~Q~~~~~~~Y~-~~~Gp~H~~~~F~~~v~v~g~~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 3 SGSSGYIGLVNSFAQKKKLSVNYE-QCEPNSELPQRFICKCKIGQTM-YGTGSGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSSSCHHHHHHHHHHHTTCCEEEE-ECCCSSSSSCCEEEEEEESSCE-EEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHcCCCCeeE-EeeCCCCCCceEEEEEEECCEE-EEEeecCCHHHHHHHHHHHHHHHHHhc
Confidence 346799999999999995566999 888999999 799999999974 799999999999999999999999753
No 12
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.87 E-value=5.6e-22 Score=135.23 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHhc-CCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEec-cCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 3 GDGLVKAFLNEWCQKN-SKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNS-TNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 3 ~~~n~ks~L~E~~qk~-~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G-~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
...|||+.||||||++ +..|.|++...||+|++.|+|.|.|+|.. ++.|.| +|||+||+.||+.||+.|..++.
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~-~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~ 90 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVR-YNSLPGFFNRKAAEQSAAEVALRELAKSSE 90 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEE-EECCSCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEE-EEEeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 3579999999999999 67899998767999999999999999974 799999 99999999999999999986544
No 13
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=133.34 Aligned_cols=68 Identities=21% Similarity=0.396 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHh-----c-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 5 GLVKAFLNEWCQK-----N-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 5 ~n~ks~L~E~~qk-----~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
.|||+.||||||+ + +..|.|++ .+.||+|++.|+|.|.|+|.. ++.|.|+|||+||+.||+.||+.|.
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~-~~~G~G~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGER-IGCGKGPSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEE-CCCEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEE-EEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 5899999999998 3 56899998 468999999999999999974 7999999999999999999999874
No 14
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.86 E-value=2.2e-21 Score=134.35 Aligned_cols=76 Identities=29% Similarity=0.401 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHhcCCCceEEEEeeCCCCCccEEEEEEE-----CCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCCCC
Q psy14233 5 GLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI-----AGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVN 79 (122)
Q Consensus 5 ~n~ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~~F~~~V~v-----~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~~~ 79 (122)
.|||+.||||||+++..|.|++...||+|.++|+|.|.| +|. +++.|.|+|||+||+.||+.||+.|...+.+.
T Consensus 26 ~d~Kt~LqE~~Qk~~~~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~-~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ie 104 (113)
T 1uil_A 26 ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRR-IFAREHGSNKKLAAQSCALSLVRQLYHLGVIE 104 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEE-EEEECCCSSHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHCCCCCeEEEeeECCCCCCcEEEEEEEeeeccCCE-EEEEEeeCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 489999999999994499999878899999999999999 465 58999999999999999999999999877766
Q ss_pred CC
Q psy14233 80 ER 81 (122)
Q Consensus 80 ~~ 81 (122)
..
T Consensus 105 ~~ 106 (113)
T 1uil_A 105 AY 106 (113)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 15
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.86 E-value=4.4e-22 Score=133.99 Aligned_cols=70 Identities=19% Similarity=0.065 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHhcCCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..|||+.||||||+.+..|.|++...||+|++.|++.|.|+|...+|.|.|+|||+|||.||+.||..|.
T Consensus 5 ~~D~KT~LQE~~Q~~~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp CHHHHHHHHHHTCSSSSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999987789999976699999999999999996137999999999999999999999886
No 16
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.86 E-value=2.9e-22 Score=129.28 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHhc-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..|||+.||||||++ +. |.|++ ...||+|.+.|+|.|.|+| . ++.|.|+|||+||+.||+.||+.|.
T Consensus 6 ~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~-~~~G~G~sKK~Aeq~AA~~aL~~L~ 74 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-I-VTEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-E-EEEECCCSTTSSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-E-EEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 479999999999999 55 99998 4789999999999999999 4 7999999999999999999999984
No 17
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.86 E-value=2.2e-21 Score=124.36 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
..|||+.||||||+ +..|.|++ ...||+|+++|++.|.|+|.. + .|.|+|||+||+.||+.||+.|..
T Consensus 3 ~~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~-~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-F-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH-CSCCEEEEEEEECSSSSCEEEEEEESSSSE-E-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC-CCCceEEEEEeeCCCCCCeEEEEEEECCEE-E-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 46999999999996 78999997 568999999999999999975 4 899999999999999999999963
No 18
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.84 E-value=5.9e-21 Score=132.90 Aligned_cols=70 Identities=19% Similarity=0.065 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHhcCCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..|||+.||||||+.+..|.|.+...||+|++.|++.|.|+|...+|.|.|.|||+|||.||+.||..|.
T Consensus 7 ~~D~KT~LQE~~Q~~~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999976789999866699999999999999996137999999999999999999999887
No 19
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.84 E-value=1.6e-20 Score=126.72 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHhcCCCceEEEE-eeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDVR-AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..|||+.||||||++ ..|.|++. +.||+|+++|++.|.|+|.. + .|.|.|||+||+.||+.||+.|.
T Consensus 15 ~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~-~G~G~SKK~Aeq~AA~~aL~~L~ 82 (97)
T 2dmy_A 15 AIDLMNALMRLNQIR-PGLQYKLLSQSGPVHAPVFTMSVDVDGTT-Y-EASGPSKKTAKLHVAVKVLQAMG 82 (97)
T ss_dssp SSSCTHHHHHHHHHS-CSCCCEEEEEESCSSSCEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhcC-CCceEEEEEeeCCCCCCeEEEEEEECCEE-E-EEeeCCHHHHHHHHHHHHHHHhC
Confidence 579999999999996 78999985 68999999999999999985 5 89999999999999999999993
No 20
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.82 E-value=7.5e-20 Score=123.66 Aligned_cols=68 Identities=24% Similarity=0.425 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHhc-CCCceEEEE-eeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 3 GDGLVKAFLNEWCQKN-SKQPEFDVR-AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 3 ~~~n~ks~L~E~~qk~-~~~p~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
...|||+.||||||++ +..|.|++. ..||+ +.|+|.|.|+|.. ++.|.|.|||+||+.||+.||+.|.
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~-~~~G~G~SKK~Aeq~AA~~AL~~L~ 83 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVT-YGSGTASSKKLAKNKAARATLEILI 83 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEE-EEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999999 678999985 57887 9999999999974 7999999999999999999999995
No 21
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=122.64 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=61.3
Q ss_pred CChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 5 GLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 5 ~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
.++|+.||||||+++ .|.|++ .+.||+|+++|+|.|.|+|.. + .|.|+|||+|||.||+.||+.|.
T Consensus 14 ~~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~-~-~G~G~SKK~AEq~AA~~AL~~L~ 80 (91)
T 2l33_A 14 KHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQK-F-QGAGSNKKVAKAYAALAALEKLF 80 (91)
T ss_dssp SSTTCHHHHHHHHCS-SCEEEEEEEEECSSCEEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHhCC-CCeEEEEEeeCCCCCCeEEEEEEECCEE-E-EeeeCCHHHHHHHHHHHHHHHHh
Confidence 589999999999998 999997 568999999999999999975 4 89999999999999999999994
No 22
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.5e-19 Score=125.43 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=59.9
Q ss_pred CCCChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 3 GDGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 3 ~~~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
...|||+.||||||+ |.|++ .+.||+|+++|+|.|.|+|.. + .|.|.|||+|||.||+.||+.|.
T Consensus 35 ~~kd~Ks~LQE~~q~----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~-~-~G~G~SKK~AEq~AA~~AL~~L~ 100 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG----LIYKLESQTGPVHAPLFTISVEVDGQK-Y-LGQGRSKKVARIEAAATALRSFI 100 (114)
T ss_dssp CCSCHHHHHHHHCSC----CEEEEEEEECCSSSCEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHccC----CeEEEEEeeCCCCCCeEEEEEEECCEE-E-EeeeCCHHHHHHHHHHHHHHHHH
Confidence 467999999999985 99997 568999999999999999986 5 89999999999999999999995
No 23
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.80 E-value=5.3e-19 Score=124.86 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHhc-CCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEec-cCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNS-TNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G-~SKK~Aeq~AA~~Al~~L~ 73 (122)
..|||+.||||||++ +..|.|++... +|.+.|+|.|.|+|.. ++.|.| .|||+|||.||+.||+.|.
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~-~g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQK-YQSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEE-EEESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEE-EEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 579999999999999 78899998765 8999999999999975 799999 9999999999999999995
No 24
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.79 E-value=7.7e-19 Score=111.80 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=59.7
Q ss_pred CCCChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 3 GDGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 3 ~~~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
+..||++.||||| ..|.|++ ...||+|++.|+|.|.|+|.. ..|.|+|||+|||.||+.||+.|..
T Consensus 2 ~~knp~s~L~E~~----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~--~~G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 2 SGKNPVMILNELR----PGLKYDFLSESGESHAKSFVMSVVVDGQF--FEGSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CSSCHHHHHHHHC----CSCEEEEEECCCCTTTCCEEEEEECSSCE--EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC----CCCEEEEEEeECCCCCceEEEEEEECCEE--EEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 4689999999995 6799997 568999999999999999974 4899999999999999999999975
No 25
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.77 E-value=4.8e-19 Score=130.31 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHhcCCCceEEEE-eeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcC
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDVR-AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSG 76 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~ 76 (122)
..|||+.||||||+++..|.|++. ..||+|.+.|+|.|.|+|.. ++.|.|.|||+||+.||+.||+.|...+
T Consensus 12 ~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~-~~~G~G~sKK~Aeq~AA~~al~~L~~~~ 84 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGRE-FPEGEGRSKKEAKNAAAKLAVEILNKEK 84 (179)
T ss_dssp SCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSC-CCEEECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeeccCCCCCCeEEEEEEECCEE-EEecCCCCHHHHHHHHHHHHHHHHhccc
Confidence 469999999999999555999974 68999999999999999974 7999999999999999999999997543
No 26
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=106.85 Aligned_cols=66 Identities=26% Similarity=0.309 Sum_probs=56.2
Q ss_pred CCCChHHHHHHHHHhcCCCceEEEE-eeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 3 GDGLVKAFLNEWCQKNSKQPEFDVR-AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 3 ~~~n~ks~L~E~~qk~~~~p~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
+.+||.+.|+|++ ..|.|++. +.||+|+++|++.|.|+|.. + .|.|+|||+|||.||+.||+.|..
T Consensus 5 ~~K~pl~~L~q~~----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (75)
T 3p1x_A 5 HGKNPVMELNEKR----RGLKYELISETGGSHDKRFVMEVEVDGQK-F-QGAGSNKKVAKAYAALAALEKLFP 71 (75)
T ss_dssp -CCCHHHHHHHHS----TTCCEEEEEEESCTTSCEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHcC----CCCEEEEEEeeCCCCCceEEEEEEECCEE-E-EEEECCHHHHHHHHHHHHHHHHHc
Confidence 3567777777664 68999984 68999999999999999975 4 899999999999999999999943
No 27
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.73 E-value=1.7e-17 Score=127.72 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHHhc-CCCceEEEE-eeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDVR-AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
..|||+.||||||++ +..|+|++. +.||+|.+.|+|.|.|+|+. ++.|.|.|||+||+.||+.||+.|..
T Consensus 178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 178 LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKT-IATGKGRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp CSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEE-EEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEE-EEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 469999999999999 779999974 68999999999999999975 79999999999999999999999953
No 28
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.72 E-value=1.9e-17 Score=124.94 Aligned_cols=68 Identities=29% Similarity=0.550 Sum_probs=63.4
Q ss_pred CCChHHHHHHHHHhc-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..|||+.||||||++ +..|.|++ ...||+|.+.|+|.|.|+|+ ++.|.|.|||+||+.||+.||+.|.
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~--~~~G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY--RTLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE--EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE--EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 479999999999999 78899997 57899999999999999996 6999999999999999999999984
No 29
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=122.25 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHhc-CCCceEEEE-eeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDVR-AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
..|||+.||||||++ +..|.|++. ..||+ +.|+|.|.|+|.. ++.|.|.|||+||+.||+.||..|..
T Consensus 21 ~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~-~~~G~G~SKK~Aeq~AA~~aL~~L~~ 90 (232)
T 2yt4_A 21 GKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVT-YGSGTASSKKLAKNKAARATLEILIP 90 (232)
T ss_dssp TSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEE-EEEEEESSHHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEE-EeecCCCCHHHHHHHHHHHHHHHHHh
Confidence 579999999999999 678999985 67887 9999999999975 79999999999999999999999954
No 30
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.69 E-value=5.7e-17 Score=119.21 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHhcCCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHc
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRS 75 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~ 75 (122)
..||+++||||||+++..+.|++...||+|.+.|+|+|.|+|.. ++.|.|.|||+||+.||+.||..|...
T Consensus 103 ~~n~~~~L~E~~qk~~~~~~Y~~~~~G~~h~~~F~~~v~v~~~~-~~~g~g~sKK~Ak~~AA~~al~~L~~~ 173 (179)
T 1qu6_A 103 MGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKE-YSIGTGSTKQEAKQLAAKLAYLQILSE 173 (179)
T ss_dssp CCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETTB-CCEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCcceEEecCcCCCCCCeEEEEEEECCEE-EeeEEECCHHHHHHHHHHHHHHHHhcc
Confidence 46999999999999955669998889999999999999999975 699999999999999999999999764
No 31
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.65 E-value=8.8e-18 Score=128.26 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHhc-CCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcC
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSG 76 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~ 76 (122)
..|||+.||||||++ +..|+|++...||+|.+.|+|.|+|+|+ +++.|.|.|||+||+.||+.||+.|..++
T Consensus 161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~-~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDS-EYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCE-EEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 369999999999999 6789999866999999999999999997 47999999999999999999999997543
No 32
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.63 E-value=1.7e-17 Score=127.73 Aligned_cols=69 Identities=30% Similarity=0.350 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHhc-CCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..|||+.||||||++ +..|.|++ ...||+|.+.|+|.|.|+|+. ++.|.|.|||+||+.||+.||+.|.
T Consensus 176 ~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~-~~~G~G~SKK~Aeq~AA~~AL~~L~ 246 (248)
T 3n3w_A 176 IKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKE-LARAIAGSKKEAQQMAAKIALEKLG 246 (248)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEE-EEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 479999999999999 68899997 478999999999999999974 7999999999999999999999885
No 33
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.60 E-value=3.4e-15 Score=114.18 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHc
Q psy14233 4 DGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRS 75 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~ 75 (122)
..|||++|||| +..|.|++ ...||+|.+.|+|.|.|+|.. ..|.|+|||+|||.||+.||+.|...
T Consensus 160 ~~d~ks~LqE~----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~--~~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 160 GKNPVMILNEL----RPGLKYDFLSESGESHAKSFVMSVVVDGQF--FEGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SCCHHHHHHHH----CCCEEEEEECCSSSSSSCCEEEEEEETTEE--EEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHhc----CCCCcEEEEEeeCCCCCCeEEEEEEECCEE--EEeeeCCHHHHHHHHHHHHHHHHccc
Confidence 36999999999 57899997 468999999999999999974 48999999999999999999999643
No 34
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.57 E-value=1.3e-14 Score=111.04 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCCChHHHHHHHHHhcCCCceEEE-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHc
Q psy14233 3 GDGLVKAFLNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRS 75 (122)
Q Consensus 3 ~~~n~ks~L~E~~qk~~~~p~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~ 75 (122)
+..|||+.|++|++. +..|.|++ ...||+|.++|++.|.|+|.. +.|.|.|||+||+.||+.||+.|...
T Consensus 2 ~~~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~--~~G~G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 2 GPVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV--FEGSGPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCCCTHHHHHHHHHH-CSSCEEEEEEEESCTTSCEEEEEEEETTEE--EEEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcCHHHHHhhc-CCCceEEEEeccCCCCCCeEEEEEEECCEE--EEEecCChHHHHHHHHHHHHHHHHhc
Confidence 567999999999976 67899998 468999999999999999975 48999999999999999999999753
No 35
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=111.39 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHhc-CCCceEE--E-EeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFD--V-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~--~-~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
..|||+.||| |+++ +..|.|+ + ...||+|.+.|+|.|. + +++.|.|.|||+||+.||+.||+.|..
T Consensus 129 ~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~--~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 198 (232)
T 2yt4_A 129 LLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K--HTVRGWCKNKRVGKQLASQKILQLLHP 198 (232)
T ss_dssp CCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T--EEEEEEESSHHHHHHHHHHHHHHHHST
T ss_pred CCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E--EEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 4699999999 8888 7889999 4 4689999999999886 5 369999999999999999999999953
No 36
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.32 E-value=1.3e-13 Score=110.63 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHhc-CC-CceEEEE-eeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-SK-QPEFDVR-AAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~-~p~Y~~~-~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
..|||+.||||||++ +. .|.|++. ..|| |++.|+|+|+. +|.|.|.|||+|||.||+.||+.|..
T Consensus 253 ~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~-~g~G~G~SKK~AEq~AA~~AL~~L~~ 320 (341)
T 3rv0_A 253 NKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDIL-LDEAEGNSIREAEHRAAMKVLENDEL 320 (341)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEE-EEEEEeCCHHHHHHHHHHHHHHHhhh
Confidence 369999999999998 44 5799974 5564 99999999974 79999999999999999999999974
No 37
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.22 E-value=3.2e-11 Score=92.70 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhcCCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHH
Q psy14233 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74 (122)
Q Consensus 7 ~ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~ 74 (122)
||+.|+||++.....+.|. ..++.|.+.|++.|.|+|.. +|.|.|.|||+|||.||+.||+.|..
T Consensus 199 ~k~~l~el~~~~~~~~~~~--~~~~~~~~~f~v~v~v~~~~-~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 199 PRSPVRELLEMEPETAKFS--PAERTYDGKVRVTVEVVGKG-KFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp CCCHHHHHHHHCTTTEEEC--CCEECTTSCEEEEEEETTTE-EEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccCCceee--eccccCCCcEEEEEEEecce-EEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4444444444442223332 23346899999999999975 79999999999999999999999964
No 38
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=98.12 E-value=2e-05 Score=52.97 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHhc-C-----CCceEEEEeeCCCCCccEEEEEEECC----EEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 4 DGLVKAFLNEWCQKN-S-----KQPEFDVRAAGPKHRQRFLCELRIAG----IGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~-----~~p~Y~~~~~Gp~h~~~F~~~V~v~g----~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..+.++.|+.||++. . ..|.|.+..... ....| |+|.+-. +.+.|.-. .||+.||+.||-+|+..|.
T Consensus 3 ~~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~-~sk~~AK~sAAf~Ac~~L~ 79 (102)
T 2kou_A 3 GGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLL-PSTEAAKKDACLKAVHELH 79 (102)
T ss_dssp CSHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCcc-ccHHHHHHHHHHHHHHHHH
Confidence 357889999999997 2 479999754321 23467 9988632 12456666 9999999999999999999
Q ss_pred HcCCCCCCCCCC
Q psy14233 74 RSGQVNERDVPV 85 (122)
Q Consensus 74 ~~~~~~~~~~p~ 85 (122)
+.|.++..-+|.
T Consensus 80 ~~G~Ldd~LlP~ 91 (102)
T 2kou_A 80 NLGVLNDFLLPD 91 (102)
T ss_dssp HHCSCTTTSCCH
T ss_pred HCCCCccccCCC
Confidence 999998876664
No 39
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.93 E-value=0.0037 Score=42.78 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHhc-CC--CceEEE--EeeCCCCCccEEEEEEEC--CEEEEEeEeccCHHHHHHHHHHHHHHHHHHcC
Q psy14233 4 DGLVKAFLNEWCQKN-SK--QPEFDV--RAAGPKHRQRFLCELRIA--GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSG 76 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~--~p~Y~~--~~~Gp~h~~~F~~~V~v~--g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~ 76 (122)
.-.||++|+...|.- .. .-.|.+ ...| .+.=.|.+.+. -. +..+|.|+.|-+||..||-.||+.|...|
T Consensus 16 Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g---~k~K~~tl~l~WP~~-mef~a~G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 16 FPQPKNLLNSVIGRALGISHAKDKLVYVHTNG---PKKKKVTLHIKWPKS-VEVEGYGSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp CSCHHHHHHHHHHHHTTHHHHHHHEEEEECCS---SSSEEEEEEECSSSC-EEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHccCchhhheeEEeecC---CceeEEEEEecCCCc-EEEEeeccchHHHHHHHHHHHHHHHHHcC
Confidence 348999999998886 31 223322 1223 22235555553 32 35688999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy14233 77 QVNERDVPVE 86 (122)
Q Consensus 77 ~~~~~~~p~~ 86 (122)
.+...+.|..
T Consensus 92 ll~p~n~pl~ 101 (119)
T 2db2_A 92 LLGPRNELFD 101 (119)
T ss_dssp SSCTTCCCCC
T ss_pred ccCCCCCcch
Confidence 9999888754
No 40
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0085 Score=53.43 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHhcCCCceEEEEe------eC------CCCC-ccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHH
Q psy14233 5 GLVKAFLNEWCQKNSKQPEFDVRA------AG------PKHR-QRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQY 71 (122)
Q Consensus 5 ~n~ks~L~E~~qk~~~~p~Y~~~~------~G------p~h~-~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~ 71 (122)
..||..+++ |.+..+.|.+++ .| |... -.|.|.+-+-+.. +-.+.-+-||+|||.||+.||++
T Consensus 17 ~~pk~~~~q---~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~-~~~~~~~~kkd~eq~aa~~al~~ 92 (950)
T 3htx_A 17 PTPKAIIHQ---KFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFS-VVSNVFKKKKDSEQSAAELALDK 92 (950)
T ss_dssp CCCHHHHHH---TTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCE-EECCCBSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHH---HhCcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCce-EecchhhccccHHHHHHHHHHHH
Confidence 378888763 445669997742 11 1222 2799999987764 34799999999999999999999
Q ss_pred HHH
Q psy14233 72 LVR 74 (122)
Q Consensus 72 L~~ 74 (122)
|..
T Consensus 93 ~g~ 95 (950)
T 3htx_A 93 LGI 95 (950)
T ss_dssp TTS
T ss_pred hCC
Confidence 854
No 41
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=71.36 E-value=12 Score=26.04 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 8 ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
..+|-++|+.....|+|... .| .+.+.+++..+ .+.|.|+.+|....+..+++.-+
T Consensus 41 ~~lL~~~L~~y~f~~e~i~E-dG-------s~t~~l~eldi--~~~g~T~eeA~~~li~~l~eYAe 96 (139)
T 3k6q_A 41 EQIIKDLLQDLKIHAELSKE-DG-------IIIGTIDGFDL--VVSGESEQEVIQKLAEDLLEYAQ 96 (139)
T ss_dssp HHHHHHHTTTCCEEEEEEEE-TT-------EEEEEETTTCC--EEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCceEEEec-CC-------eEEEEecCcee--EeeCCCHHHHHHHHHHHHHHHHH
Confidence 35678888433444444433 33 37788898765 45669999999999988887654
No 42
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=53.92 E-value=2.3 Score=37.10 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=32.0
Q ss_pred CCCh-HHHHHHHHHhcCCCceEEEEeeCCCCCccEEEEEEECCEEEEEeEeccCHHHHH---------HHHHHHHHHHHH
Q psy14233 4 DGLV-KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ---------TNAAKDFVQYLV 73 (122)
Q Consensus 4 ~~n~-ks~L~E~~qk~~~~p~Y~~~~~Gp~h~~~F~~~V~v~g~~~~g~G~G~SKK~Ae---------q~AA~~Al~~L~ 73 (122)
..|| |+.|||||| ++. ++.|.+.+.+.|+ ..||+.||+.|.
T Consensus 446 ~~Dp~Kt~LqE~~q----------------------------~~~-ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~ 496 (756)
T 2qvw_A 446 CPDAVTKASKRVCM----------------------------GEA-GAHEFRSLVDYACEQGISVFCSSRVSTMFLERLR 496 (756)
T ss_dssp CCHHHHHHHHHHHT----------------------------SCC-CHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHh----------------------------ccc-hhhhhhhhhhHHhhhccccchhhHHHHHHHHhhc
Confidence 3577 999999997 222 4667778888888 679999998875
Q ss_pred H
Q psy14233 74 R 74 (122)
Q Consensus 74 ~ 74 (122)
.
T Consensus 497 ~ 497 (756)
T 2qvw_A 497 D 497 (756)
T ss_dssp H
T ss_pred c
Confidence 4
No 43
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=46.19 E-value=12 Score=21.80 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=17.2
Q ss_pred EeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 52 GNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 52 G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
=.+++||+|+.-||-. +..+...|+
T Consensus 8 itartkkeaekfaail-ikvfaelgy 32 (62)
T 2gjh_A 8 ITARTKKEAEKFAAIL-IKVFAELGY 32 (62)
T ss_dssp EECSSHHHHHHHHHHH-HHHHHHTTC
T ss_pred EEecchhHHHHHHHHH-HHHHHHhCc
Confidence 3569999999988853 344445555
No 44
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=39.64 E-value=56 Score=23.67 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=29.3
Q ss_pred CccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 34 RQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 34 ~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
++.-++.++-.|+ ++..| ++|..+|+. |++..++.|++.|+
T Consensus 56 ~Pk~t~lIF~SGK-iv~TG-akS~e~a~~-a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 56 SPKITSLIFKSGK-MVVTG-AKSTDELIK-AVKRIIKTLKKYGM 96 (198)
T ss_dssp TTTEEEEECTTSE-EEEEC-CSSHHHHHH-HHHHHHHHHHHTTC
T ss_pred CCceEEEEeCCCe-EEEec-cCCHHHHHH-HHHHHHHHHHHcCC
Confidence 4556666666897 44555 488888887 77888888887665
No 45
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=37.65 E-value=37 Score=25.92 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.7
Q ss_pred EEeEeccCHHHHHHHHHHHHHHHHHHc
Q psy14233 49 VGAGNSTNKKDAQTNAAKDFVQYLVRS 75 (122)
Q Consensus 49 ~g~G~G~SKK~Aeq~AA~~Al~~L~~~ 75 (122)
+|+|.|.|=.+|+. -|+.||+.++..
T Consensus 214 vGIGiG~TA~~Ae~-~A~~ALe~~R~~ 239 (268)
T 2qv6_A 214 AGIGIGRTAEDASN-LADIGLEKIRGK 239 (268)
T ss_dssp EEEEEESSHHHHHH-HHHHHHHHHHTT
T ss_pred EeeccCCCHHHHHH-HHHHHHHHHHhc
Confidence 69999999999999 678899999854
No 46
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=37.34 E-value=69 Score=22.83 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=28.8
Q ss_pred CccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 34 RQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 34 ~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
+|.-++-++..|+ ++.+| ++|..+|+. |++..++.|.+-|+
T Consensus 48 ~Pk~~~lIF~SGK-iv~TG-aks~e~~~~-a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 48 EPKTTALIFASGK-MVVTG-AKSEDDSKL-ASRKYARIIQKIGF 88 (180)
T ss_dssp TTTEEEEECTTSE-EEEEE-ESSHHHHHH-HHHHHHHHHHHHTC
T ss_pred CCcEEEEEECCCe-EEEEe-cCCHHHHHH-HHHHHHHHHHHcCC
Confidence 4555666667897 45555 488888877 77777777876664
No 47
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=34.53 E-value=83 Score=23.25 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=29.5
Q ss_pred CccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 34 RQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 34 ~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
++.-++-++-.|+ ++..| ++|..+|+. |++...+.|++.|+
T Consensus 86 ~Pk~t~LIF~SGK-iV~TG-AkS~e~a~~-A~~ki~~~L~~lG~ 126 (218)
T 3eik_A 86 EPKTTALIFASGK-MVITG-AKSEKSSRM-AAQRYAKIIHKLGF 126 (218)
T ss_dssp TTTEEEEECTTSE-EEEEE-ESSHHHHHH-HHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCCe-EEEEe-cCCHHHHHH-HHHHHHHHHHHcCC
Confidence 3455666666897 45666 588888887 77777788887665
No 48
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=31.24 E-value=1.1e+02 Score=21.79 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=29.9
Q ss_pred CCccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 33 HRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 33 h~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
.+|.-++.++-.|+ ++..| ++|..+|+. |++...+.|++.|+
T Consensus 55 ~~Pk~t~lIF~SGK-iv~TG-AkS~e~a~~-a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 55 SVPKVALLIFRSGK-VNCTG-AKSKEEAEI-AIKKIIKELKDAGI 96 (188)
T ss_dssp TTTTEEEEECTTSE-EEEEE-ESSHHHHHH-HHHHHHHHHHHTTC
T ss_pred CCCcEEEEEeCCCe-EEEec-CCCHHHHHH-HHHHHHHHHHhcCC
Confidence 34555666666897 45665 488888887 77777888887765
No 49
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=29.40 E-value=1.2e+02 Score=22.62 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=28.7
Q ss_pred CccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 34 RQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 34 ~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
++.-++-++..|+ ++.+| ++|..+|+. |++..++.|.+-|+
T Consensus 108 ~Pk~t~lIF~SGK-iV~TG-aks~e~a~~-A~~~i~~~L~~lg~ 148 (240)
T 1rm1_A 108 EPKTTALIFASGK-MVVTG-AKSEDDSKL-ASRKYARIIQKIGF 148 (240)
T ss_dssp TTEEEEEEETTSE-EEEEE-ESSHHHHHH-HHHHHHHHHHHHTC
T ss_pred CCcEEEEEECCCe-EEEEe-cCCHHHHHH-HHHHHHHHHHHcCC
Confidence 3455666667897 45555 488888877 77777788877664
No 50
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=28.42 E-value=33 Score=21.92 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=17.9
Q ss_pred eEeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 51 AGNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 51 ~G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
.=.+++||+|+.-||-. +..+...|+
T Consensus 51 sitartkkeaekfaail-ikvfaelgy 76 (106)
T 1qys_A 51 SITARTKKEAEKFAAIL-IKVFAELGY 76 (106)
T ss_dssp EEECSSHHHHHHHHHHH-HHHHHHTTC
T ss_pred EEEecchhHHHHHHHHH-HHHHHHhCC
Confidence 34679999999988853 344445555
No 51
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=25.38 E-value=1.4e+02 Score=21.19 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=28.8
Q ss_pred CccEEEEEEECCEEEEEeEeccCHHHHHHHHHHHHHHHHHHcCC
Q psy14233 34 RQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQ 77 (122)
Q Consensus 34 ~~~F~~~V~v~g~~~~g~G~G~SKK~Aeq~AA~~Al~~L~~~~~ 77 (122)
+|.-++.++-.|+ ++..| ++|..+|+. |++..++.|++.|.
T Consensus 52 ~P~~t~lIF~SGK-iv~TG-akS~~~~~~-a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 52 DPKVALLIFSSGK-LVVTG-AKSVQDIER-AVAKLAQKLKSIGV 92 (182)
T ss_dssp SSCCEEEECTTSE-EEEEE-ESSHHHHHH-HHHHHHHHHHHTTC
T ss_pred CCcEEEEEeCCCe-EEEec-CCCHHHHHH-HHHHHHHHHHHcCC
Confidence 3445666666897 45655 478888887 77777888887665
No 52
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=24.98 E-value=1.3e+02 Score=18.62 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=25.6
Q ss_pred eCCCCCccEEEEEEECCEEE-EEeEe--ccCHHHHHHHHH
Q psy14233 29 AGPKHRQRFLCELRIAGIGY-VGAGN--STNKKDAQTNAA 65 (122)
Q Consensus 29 ~Gp~h~~~F~~~V~v~g~~~-~g~G~--G~SKK~Aeq~AA 65 (122)
-.|...+.|.+...++|+.. ++.|. ..|-++|++.|.
T Consensus 30 V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~ 69 (88)
T 3jtz_A 30 VKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQRE 69 (88)
T ss_dssp ECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHH
T ss_pred EecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHH
Confidence 34567899999999999742 23343 357888888554
No 53
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=21.87 E-value=1.2e+02 Score=27.20 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHhc-CCCceEEEE---------------------------------eeCCCCCccEEEEEEEC--CEE
Q psy14233 4 DGLVKAFLNEWCQKN-SKQPEFDVR---------------------------------AAGPKHRQRFLCELRIA--GIG 47 (122)
Q Consensus 4 ~~n~ks~L~E~~qk~-~~~p~Y~~~---------------------------------~~Gp~h~~~F~~~V~v~--g~~ 47 (122)
.-.|+..|-.+|.++ ...|.|.+. ..+|+-...|.|+|.|- ++.
T Consensus 393 g~~pr~~l~~fc~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~~~~~~~~~~ 472 (950)
T 3htx_A 393 GPLPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQD 472 (950)
T ss_dssp SSCHHHHHHHHHHTTTCCCCEEECCC--------------------------------------------CEEEEEETTE
T ss_pred CCChHHHHHHHHHHhhcCcceeeeccCccccccccccccccccccccchhhhcCCcccCCCCCcccceEEEEEEEecccc
Confidence 346899999999998 778888631 01122222399999883 322
Q ss_pred E----EEeEeccCHHHHHHHHHHHHHHHHH
Q psy14233 48 Y----VGAGNSTNKKDAQTNAAKDFVQYLV 73 (122)
Q Consensus 48 ~----~g~G~G~SKK~Aeq~AA~~Al~~L~ 73 (122)
+ ...+.=+..-+|=|+|+.++|--|.
T Consensus 473 ~~~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 502 (950)
T 3htx_A 473 LVLECSPRKFYEKENDAIQNASLKALLWFS 502 (950)
T ss_dssp EEEEECCSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhccChhhhhhhccHHHHHHHHHHHHHHH
Confidence 1 1234445668999999999998885
Done!