RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14233
(122 letters)
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Mus musculus} SCOP: d.50.1.1
PDB: 2rs6_A
Length = 99
Score = 126 bits (317), Expect = 3e-39
Identities = 48/90 (53%), Positives = 62/90 (68%)
Query: 7 VKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ+NAA+
Sbjct: 8 IKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67
Query: 67 DFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
DFV YLVR +V +VP I P+GPS
Sbjct: 68 DFVNYLVRINEVKSEEVPAVGIVPPPSGPS 97
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant
protein; NMR {Arabidopsis thaliana}
Length = 103
Score = 63.7 bits (155), Expect = 1e-14
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L E+ QK P +++ GP H+ F + + G+ Y N+K A+ +AA+
Sbjct: 20 KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 79
Query: 67 DFVQYLVRSGQVNERDVPV 85
++ L +S ++++
Sbjct: 80 VALRELAKSSELSQCVSQP 98
>2dix_A Interferon-inducible double stranded RNA- dependent protein
kinase activator A; structure genomics, DSRM domain,
hypothetical protein PRKRA; NMR {Homo sapiens} SCOP:
d.50.1.1
Length = 84
Score = 62.3 bits (152), Expect = 2e-14
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
L+E+ K P ++ R+ H F + + I G G S KK A+ AA+
Sbjct: 11 IQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTS--KKLAKHRAAE 68
Query: 67 DFVQYL 72
+ L
Sbjct: 69 AAINIL 74
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken
structural genomics/proteomics initiative, RSGI RNA
binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB:
2rs7_A
Length = 113
Score = 63.2 bits (153), Expect = 2e-14
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRI----AGIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 29 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 88
Query: 64 AAKDFVQYLVRSG 76
A V+ L G
Sbjct: 89 CALSLVRQLYHLG 101
>1x49_A Interferon-induced, double-stranded RNA- activated protein
kinase; structure genomics, DSRM domain, structural
genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Length = 97
Score = 62.0 bits (151), Expect = 5e-14
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 8 KAFLNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
LN++ Q + + ++ +GP H +RF ++ I + +K++A+ AAK
Sbjct: 17 MDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEF-PEAKGRSKQEARNAAAK 75
Query: 67 DFVQYLVRSGQVNERD 82
V L +V+
Sbjct: 76 LAVDILDNENKVDCHT 91
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA
binding protein; 2.14A {Homo sapiens}
Length = 90
Score = 60.8 bits (148), Expect = 9e-14
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ L E+ + K P +D ++A G H+ F + + G G S KK A+ AA+
Sbjct: 17 ISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPS--KKAAKHKAAE 74
Query: 67 DFVQYLVRSGQVNE 80
+++L +
Sbjct: 75 VALKHLKGGSMLEP 88
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure,
protein/RNA, protein DSRBD, RNA hairpin; NMR
{Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Length = 76
Score = 59.3 bits (144), Expect = 3e-13
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ ++E K + F +R GP H + F+ + I G GN KK ++ AA+
Sbjct: 10 ISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNG--KKVSKKRAAE 67
Query: 67 DFVQYL 72
+ L
Sbjct: 68 KMLVEL 73
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein,
gene regulation; 3.00A {Arabidopsis thaliana} PDB:
2l2m_A
Length = 76
Score = 57.3 bits (139), Expect = 2e-12
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 5 GLVKAFLNEWCQKNSK-QPEFD-VRAAGPKHRQRFLCELRIAGIGYVGA-GNSTNKKDAQ 61
GL K L E+ QK + P + + +F C + I GI Y GA + KKDA+
Sbjct: 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT--KKDAE 61
Query: 62 TNAAKDFVQYL 72
+A + + +
Sbjct: 62 ISAGRTALLAI 72
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing,
gene regulation-RNA complex; 2.20A {Homo sapiens}
Length = 88
Score = 56.9 bits (138), Expect = 3e-12
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
L E + + PE+ V + +GP HR+ F R+ +G+G S KK A+ NAA
Sbjct: 18 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS--KKLAKRNAA 75
Query: 66 KDFVQYL 72
+ +
Sbjct: 76 AKMLLRV 82
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding
protein, gene regulation; 1.70A {Arabidopsis thaliana}
PDB: 3adi_A
Length = 73
Score = 56.5 bits (137), Expect = 3e-12
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K+ L E+ QK P +++ GP H+ F + + G+ Y N+K A+ +AA+
Sbjct: 6 KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 65
Query: 67 DFVQYL 72
++ L
Sbjct: 66 VALREL 71
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA
complex, protein-RNA interactions, RNA-bining protein;
1.90A {Xenopus laevis} SCOP: d.50.1.1
Length = 69
Score = 56.0 bits (136), Expect = 4e-12
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
L E + + PE+ V + +GP H++ F R+ G+G S K+ A+ AA
Sbjct: 3 VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTS--KQVAKRVAA 60
Query: 66 KDFVQYL 72
+ +
Sbjct: 61 EKLLTKF 67
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.50.1.1
Length = 89
Score = 54.6 bits (132), Expect = 2e-11
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
+ L + Q ++ P++ + G R+ F+ ++++ G G + KK A+ NAA
Sbjct: 9 ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPN--KKIAKKNAA 66
Query: 66 KDFVQYL 72
+ + L
Sbjct: 67 EAMLLQL 73
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain,
DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.50.1.1
Length = 89
Score = 53.1 bits (128), Expect = 1e-10
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
L E + + PE+ V + +GP HR+ F R+ +G+G S KK A+ NAA
Sbjct: 19 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTS--KKLAKRNAA 76
Query: 66 KDFVQYL 72
+ +
Sbjct: 77 AKMLLRV 83
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure,
transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Length = 179
Score = 54.5 bits (131), Expect = 2e-10
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
LN + QK ++ ++ +GP H +RF ++ I G + G +KK+A+ AAK
Sbjct: 16 MEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREF-PEGEGRSKKEAKNAAAK 74
Query: 67 DFVQYL 72
V+ L
Sbjct: 75 LAVEIL 80
Score = 53.4 bits (128), Expect = 4e-10
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+N QK ++ A+G + F + ++ Y G + K++A+ AAK
Sbjct: 107 IGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEY-SIGTGSTKQEAKQLAAK 164
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference,
endonucleolytic cleavage, hydrolase/RNA complex; 1.70A
{Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A
2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A
1jfz_A 1rc5_A
Length = 221
Score = 54.1 bits (131), Expect = 4e-10
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 153 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 210
Query: 66 KDFVQYL 72
++ ++ L
Sbjct: 211 EELIKLL 217
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA
binding domain, DSRBD, DSRM, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.50.1.1
Length = 128
Score = 50.7 bits (121), Expect = 2e-09
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L EWC++ P ++ + F + +A Y +KK A+ AA
Sbjct: 29 KMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAI 86
Query: 67 DFVQYL 72
++
Sbjct: 87 VCLRSQ 92
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: d.50.1.1
Length = 98
Score = 48.3 bits (115), Expect = 8e-09
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
L+E+ Q+ K + F + I G+ Y G+G +++KK A+ AA+
Sbjct: 19 VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTY-GSGTASSKKLAKNKAARA 77
Query: 68 FVQYLV 73
++ L+
Sbjct: 78 TLEILI 83
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic
protein structure initiative; 2.10A {Mycobacterium
tuberculosis}
Length = 242
Score = 49.9 bits (120), Expect = 1e-08
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 8 KAFLNEWCQKNSKQ-PEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
K L E P + V + GP H + F + + Y G+G +KK+A+ AA
Sbjct: 165 KTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEY-GSGVGRSKKEAEQKAAA 223
Query: 67 DFVQYL 72
+ L
Sbjct: 224 AAWKAL 229
>1x48_A Interferon-induced, double-stranded RNA- activated protein
kinase; structure genomics, DSRM domain, structural
genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Length = 88
Score = 47.0 bits (111), Expect = 3e-08
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQ 70
+N + QK ++ + QRF+C+ +I Y G G+ K++A+ AAK+ Q
Sbjct: 12 VNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMY-GTGSGVTKQEAKQLAAKEAYQ 70
Query: 71 YLVRS 75
L++S
Sbjct: 71 KLLKS 75
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene
regulation, NUCL protein, gene regulation,nuclear
protein; NMR {Homo sapiens}
Length = 85
Score = 46.6 bits (111), Expect = 3e-08
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 8 KAFLNEWCQKNSKQPEFD-------VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDA 60
K+ L + C + + ++ GP H + + + G G G + + A
Sbjct: 4 KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERI-GCGKGPSIQQA 62
Query: 61 QTNAAKDFVQYL 72
+ AA D ++
Sbjct: 63 EMGAAMDALEKY 74
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding,
endonuclease, HEL hydrolase, nucleotide-binding,
phosphoprotein, RN binding; HET: MSE; 1.68A {Mus
musculus} PDB: 3c4t_A 2eb1_A
Length = 265
Score = 49.0 bits (117), Expect = 4e-08
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGY-VGAGNSTNKKDAQTNAAK 66
++ + E + + +F + + + + G G G G S + A++ AA+
Sbjct: 200 RSPVRELLEMEPETAKFSPA--ERTYDGKVRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 255
Query: 67 DFVQYL 72
++ L
Sbjct: 256 RALRSL 261
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein;
2.60A {Homo sapiens}
Length = 232
Score = 48.6 bits (115), Expect = 4e-08
Identities = 18/115 (15%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
L+E+ Q+ K + F + I G+ Y G+G +++KK A+ AA+
Sbjct: 25 VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTY-GSGTASSKKLAKNKAARA 83
Query: 68 FVQYLVRSGQVNERDVPVENIPMTPTGPSVTVNTSKRFSFIRRSSIGLPRSYEQQ 122
++ L+ + ++ +++ S+ + ++ + P +
Sbjct: 84 TLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE 138
Score = 40.1 bits (93), Expect = 4e-05
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 11 LNEWCQKNSKQPEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
L+E ++N + + P Q+ + G NK+ + A++ +
Sbjct: 136 LHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGWCK--NKRVGKQLASQKIL 193
Query: 70 QYL 72
Q L
Sbjct: 194 QLL 196
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862,
csgid, structura genomics; 2.21A {Campylobacter jejuni
subsp}
Length = 248
Score = 48.7 bits (117), Expect = 4e-08
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYV-GAGNSTNKKDAQTNA 64
K L E Q Q P+++ VRA GP H ++F L + G S KK+AQ A
Sbjct: 180 KTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGS--KKEAQQMA 237
Query: 65 AKDFVQYL 72
AK ++ L
Sbjct: 238 AKIALEKL 245
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding
protein, hydrolase; NMR {Rattus norvegicus} SCOP:
d.50.1.1 PDB: 2l2k_B
Length = 71
Score = 45.7 bits (109), Expect = 4e-08
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
LNE + +G H + F+ + + G + G+G + KK A+ AA+
Sbjct: 7 VMILNELRPGLKYD---FLSESGESHAKSFVMSVVVDGQFFEGSGRN--KKLAKARAAQS 61
Query: 68 FVQYLV 73
+ +
Sbjct: 62 ALATVF 67
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: d.50.1.1
Length = 97
Score = 45.6 bits (108), Expect = 9e-08
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 4 DGLVKAFLNEWCQKN--SKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDA 60
D +N + N ++ + +GP H F + + G Y +G S KK A
Sbjct: 12 DSKAIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPS--KKTA 69
Query: 61 QTNAAKDFVQYL 72
+ + A +Q +
Sbjct: 70 KLHVAVKVLQAM 81
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics,
PSI-biology, protein structure initiati northeast
structural genomics consortium, NESG; 1.90A {Homo
sapiens}
Length = 75
Score = 44.6 bits (106), Expect = 2e-07
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
LNE + +++ + G H +RF+ E+ + G + GAG++ KK A+ AA
Sbjct: 10 VMELNEKRRG----LKYELISETGGSHDKRFVMEVEVDGQKFQGAGSN--KKVAKAYAAL 63
Query: 67 DFVQYL 72
++ L
Sbjct: 64 AALEKL 69
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 2.00A {Thermotoga maritima} SCOP:
a.149.1.1 d.50.1.1
Length = 252
Score = 46.4 bits (111), Expect = 2e-07
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E Q K PE+ + R + F+ E+R+ G G KK+A+ AA
Sbjct: 182 KTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTI-ATGKGRTKKEAEKEAA 240
Query: 66 KDFVQYL 72
+ + L
Sbjct: 241 RIAYEKL 247
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing,
hydrolase; NMR {Drosophila melanogaster}
Length = 114
Score = 44.1 bits (104), Expect = 6e-07
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 16 QKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLV 73
+ + GP H F + + G Y+G G S KK A+ AA ++ +
Sbjct: 44 NELRHGLIYKLESQTGPVHAPLFTISVEVDGQKYLGQGRS--KKVARIEAAATALRSFI 100
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding
protein, hydrolase; NMR {Rattus norvegicus} SCOP:
d.50.1.1 PDB: 2l3c_A
Length = 73
Score = 42.6 bits (101), Expect = 6e-07
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 30 GPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
GP H F+ + + G + G+G + KK A+ +AA+ ++ V+
Sbjct: 29 GPVHAPLFVMSVEVNGQVFEGSGPT--KKKAKLHAAEKALRSFVQ 71
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA
recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus
norvegicus}
Length = 236
Score = 45.3 bits (106), Expect = 7e-07
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 15 CQKNSKQ--------PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
KN+ ++ + GP H F+ + + G + G+G + KK A+ +AA
Sbjct: 5 LPKNALMQLNEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPT--KKKAKLHAA 62
Query: 66 KDFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
+ ++ V+ +E + + T +
Sbjct: 63 EKALRSFVQFPNASEAHLAMGRTLSVNTDFT 93
Score = 43.0 bits (100), Expect = 4e-06
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 8 KAFLNEWCQKNSKQPEF-DVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
LNE ++ + +G H + F+ + + G + G+G + KK A+ AA+
Sbjct: 164 VMILNELRP----GLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRN--KKLAKARAAQ 217
Query: 67 DFVQYL 72
+ +
Sbjct: 218 SALATV 223
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A
{Vanderwaltozyma polyspora}
Length = 341
Score = 43.2 bits (102), Expect = 4e-06
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGY-VGAGNSTNKKDAQTNAAK 66
K L E Q N + R F E++I I GNS ++A+ AA
Sbjct: 257 KNELAELLQINKLGHKLHYR--KLTEMPPFRVEVKIGDILLDEAEGNS--IREAEHRAAM 312
Query: 67 DFVQYL 72
++
Sbjct: 313 KVLEND 318
>2l33_A Interleukin enhancer-binding factor 3; structural genomics,
northeast structural genomics consortiu PSI-biology,
protein structure initiative, DRBM; NMR {Homo sapiens}
Length = 91
Score = 41.3 bits (97), Expect = 4e-06
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 11 LNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
LNE + +++ + G H +RF+ E+ + G + GAG++ KK A+ AA +
Sbjct: 23 LNEK----RRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSN--KKVAKAYAALAAL 76
Query: 70 QYL 72
+ L
Sbjct: 77 EKL 79
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A
{Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B
2lbs_B
Length = 117
Score = 38.5 bits (89), Expect = 8e-05
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K L S + + + E R+ +G G N K A AA++
Sbjct: 11 KRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAEN 70
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR
{Saccharomyces cerevisiae} SCOP: d.50.1.1
Length = 94
Score = 35.3 bits (81), Expect = 7e-04
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K L S + + + E R+ +G G N K A AA++
Sbjct: 9 KRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAEN 68
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase;
3.00A {Giardia intestinalis} PDB: 2ffl_A
Length = 756
Score = 36.9 bits (85), Expect = 8e-04
Identities = 5/64 (7%), Positives = 11/64 (17%), Gaps = 3/64 (4%)
Query: 8 KAFLNEWCQKNSKQ-PEFDV-RAAGPKHRQRFLCELRIAGIGYV-GAGNSTNKKDAQTNA 64
++ EF + C R++ +
Sbjct: 450 VTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRL 509
Query: 65 AKDF 68
F
Sbjct: 510 GIQF 513
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.002
Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 52/172 (30%)
Query: 2 SGDGLVKAFLNEWCQKN-----------SKQPEF--------------DVRAAGPKHRQR 36
+ +V+ F+ E + N +QP D + + R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 37 F---------LCELRIA-GI---GYVGAGNS--TNK--KDAQTNAAKDFVQYLVRSGQVN 79
L ELR A + G +G+G + + DF + + N
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 80 ERDVPVENI--------PMTPTGPSVTVNTSKRFSFI--RRSSIGLPRSYEQ 121
+ +E + P + + N R I + + YE
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
>2f2l_X Peptidoglycan recognition protein-LC isoform LCX;
protein-peptidoglycan complex, membrane protein, immune
SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila
melanogaster} SCOP: d.118.1.1
Length = 167
Score = 30.9 bits (70), Expect = 0.057
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVN 79
GI ++G + + Q A + +Q VR ++
Sbjct: 98 GISFIGTFTTRKPNERQLEACQLLLQEGVRLKKLT 132
>2xz4_A Peptidoglycan-recognition protein LF; immune system, innate
immunity; HET: 1PG; 1.72A {Drosophila melanogaster}
Length = 180
Score = 31.0 bits (70), Expect = 0.065
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVN 79
I ++G + Q AAK + VR ++
Sbjct: 105 SIAFIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQ 139
>1s2j_A Peptidoglycan recognition protein SA CG11709-PA; mixed beta-sheet,
PI-helix (ONE turn), hydrolase; 2.20A {Drosophila
melanogaster} SCOP: d.118.1.1
Length = 209
Score = 30.7 bits (69), Expect = 0.072
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNE-------RDV 83
GI ++G DA AAKD + V+ G+++E V
Sbjct: 134 GIAFIGNFVDKLPSDAALQAAKDLLACGVQQGELSEDYALIAGSQV 179
>1sxr_A Peptidoglycan recognition protein SA CG11709-PA; pattern
recognition receptor, innate immunity pathway, immune
system; 1.56A {Drosophila melanogaster} SCOP: d.118.1.1
Length = 183
Score = 30.2 bits (68), Expect = 0.11
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNE-------RDV 83
GI ++G DA AAKD + V+ G+++E V
Sbjct: 108 GIAFIGNFVDKLPSDAALQAAKDLLACGVQQGELSEDYALIAGSQV 153
>3ep1_A PGRP-HD - peptidoglycan recognition protein homologue; immune
system, thermophIle, model system; 2.10A {Alvinella
pompejana}
Length = 176
Score = 29.9 bits (67), Expect = 0.13
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNE--RDV 83
G+ +G A +A + + +++ R
Sbjct: 112 GVAVIGDFGKKEPSQALQDALSKLIICGQAAEELSSGARLR 152
>1sk4_A Peptidoglycan recognition protein I-alpha; alpha/beta MIX, immune
system; 1.65A {Homo sapiens} SCOP: d.118.1.1 PDB:
2aph_A* 1sk3_A* 1twq_A* 2eav_A 2eax_A*
Length = 163
Score = 29.8 bits (67), Expect = 0.14
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNE-------RDV 83
GI ++G A AA+D +Q V G + DV
Sbjct: 96 GIAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDV 141
>1yck_A Peptidoglycan recognition protein; PGRP-S, innate immunity, pattern
recognition proteins, immune syste; 1.70A {Homo sapiens}
SCOP: d.118.1.1 PDB: 3mu9_A* 2r2k_A 2z9n_A* 2r90_A*
3c93_A* 3cg9_A* 3cor_A* 3cxa_A* 3c2x_A* 3ng4_A* 3nkw_A*
3nno_A* 3nw3_A* 3o4k_A* 3ogx_A* 3olk_A* 3qj1_A* 3qs0_A*
3qv4_A* 3rt4_A* ...
Length = 175
Score = 29.4 bits (66), Expect = 0.18
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNE-------RDV 83
GI ++G AA+ + V G + RDV
Sbjct: 107 GISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDV 152
>2rkq_A Peptidoglycan-recognition protein-SD; innate immunity, TOLL,
pattern recognition, PGRP, glycoprotein, immune
response, secreted,; 1.50A {Drosophila melanogaster}
Length = 169
Score = 29.4 bits (66), Expect = 0.18
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNE-------RDV 83
GI ++G +AAK+ ++ V+ Q+ E R V
Sbjct: 99 GIAFIGNFEERAPNKEALDAAKELLEQAVKQAQLVEGYKLLGHRQV 144
>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA;
protein-peptidoglycan complex, membrane protein, immune
SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila
melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A*
Length = 167
Score = 29.5 bits (66), Expect = 0.20
Identities = 5/47 (10%), Positives = 16/47 (34%), Gaps = 7/47 (14%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNE-------RDVP 84
Y+G+ + Q + + ++ V+ G++ +
Sbjct: 99 SFAYIGSFKTIQPSAKQLSVTRLLLERGVKLGKIAPSYRFTASSKLM 145
>2cb3_A Peptidoglycan-recognition protein-LE; PGRP, tracheal cytotoxin,
innate immunity, immune system; HET: MLD; 2.40A
{Drosophila melanogaster} SCOP: d.118.1.1
Length = 175
Score = 29.0 bits (65), Expect = 0.31
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 7/46 (15%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNE-------RDV 83
GI ++G N ++ + V G ++
Sbjct: 102 GISFIGCFMKELPTADALNMCRNLLARGVEDGHISTDYRLICHCQC 147
>1oht_A CG14704 protein; peptidoglycan-recognition protein-LB isoform 2,
hydrolase; HET: TLA; 2.0A {Drosophila melanogaster}
SCOP: d.118.1.1
Length = 215
Score = 29.1 bits (65), Expect = 0.32
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVN 79
GI +G + +AAK+ + + V G ++
Sbjct: 110 GIVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYID 144
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein;
solute-binding protein, blood group antigen,
carbohydrate transport; HET: A2G GAL FUC; 2.35A
{Streptococcus pneumoniae}
Length = 430
Score = 27.8 bits (62), Expect = 0.88
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 43 IAGIGYVGAGNSTNKKDAQTNAAKDFVQYL 72
G S+ +A+ A +F++Y+
Sbjct: 303 AISSSGGGITISSKMSEAKQKLALEFLKYM 332
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 26.9 bits (59), Expect = 1.8
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 16 QKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNST------NKKDAQTNAAKDFV 69
+S E GP ++ +LRI +G GAG S +K + A +
Sbjct: 5 HHHSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSI 64
Query: 70 --QYLVRSGQVNERDVPV 85
+ RS E ++ V
Sbjct: 65 TKKCEKRSSSWKETELVV 82
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 26.7 bits (59), Expect = 2.1
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 1 MSGDGLVKAFLNE---------WCQKNSKQPEFDVRAA----GPKHRQRFLCELRIAGIG 47
+S D + + F++ W + ++ + D A K + I G
Sbjct: 245 LSADQVKQEFVSGNLGVMRSGPWDLPDLQKSDIDFGVAPFPAYSKEDGQ-----WINGGP 299
Query: 48 YVGAGNSTNKKDAQTNAAKDFVQYL 72
G ++ D + AAK F+ YL
Sbjct: 300 DQGFAIASRASDKEKAAAKKFLAYL 324
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 26.1 bits (56), Expect = 4.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFL 38
L + C +SK + + A P H+ R+L
Sbjct: 369 LEQECPYHSKDVKAPWKTAIPPHKARYL 396
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase,
alpha-amylase FAMI acarbose, transferase; HET: ACR;
1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A*
1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*
Length = 500
Score = 25.7 bits (57), Expect = 4.6
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 13/36 (36%)
Query: 64 AAKDFVQYLVRSG----QVNERDVPVENIPMTPTGP 95
A+DF+++L +G QV P+ PTG
Sbjct: 28 EARDFLRFLKEAGGRYWQVL---------PLGPTGY 54
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Streptomyces coelicolor}
Length = 405
Score = 25.9 bits (57), Expect = 4.7
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 44 AGIGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
IG+ + N K + + F++++ R
Sbjct: 286 TLIGFWISPNGVRKIEQ----VEKFLRFMYR 312
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A
{Aquifex aeolicus} SCOP: c.1.8.1
Length = 505
Score = 25.3 bits (56), Expect = 6.1
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 13/36 (36%)
Query: 64 AAKDFVQYLVRSG----QVNERDVPVENIPMTPTGP 95
A F+ +L G QV P+ PT
Sbjct: 45 EAYRFLDFLKECGFSLWQVL---------PLNPTSL 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 6.5
Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 54/131 (41%)
Query: 11 LNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIA--GIGYVGAGNSTNKKDAQTNAAKDF 68
+ EW + S P+ D +L + I+ IG + Q
Sbjct: 215 ILEWLENPSNTPDKD-----------YLLSIPISCPLIGVI-----------Q------L 246
Query: 69 VQYLV-------RSGQVNER---------DVPV-ENIPMTPTGPSVTVNTSK--RFSFIR 109
Y+V G++ + I T + S V+ K F
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF- 305
Query: 110 RSSIGLPRSYE 120
IG+ R YE
Sbjct: 306 ---IGV-RCYE 312
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein,
endotoxin, lipid binding protein; NMR {Penaeus monodon}
Length = 102
Score = 24.7 bits (53), Expect = 6.9
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 48 YVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERD 82
G ++ ++ AKDFV+ + G +++++
Sbjct: 61 IRGEASTRSQSGVAGKTAKDFVRKAFQKGLISQQE 95
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding
protein, transport protein; 1.04A {Streptococcus
pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Length = 401
Score = 24.7 bits (54), Expect = 9.4
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 46 IGYVGAGNSTNKKDAQTNAAKDFVQYLVR 74
+G S + A FV+Y+ R
Sbjct: 289 VGAGDLAWSISATTKHPKEANAFVEYMTR 317
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.389
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,792,834
Number of extensions: 92710
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 67
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)