RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14233
(122 letters)
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 84.8 bits (209), Expect = 2e-23
Identities = 50/95 (52%), Positives = 64/95 (67%)
Query: 2 SGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQ 61
SG +K FL WC K P +++RA G K+RQ+F+CE+R+ G Y G GNSTNKKDAQ
Sbjct: 3 SGSSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQ 62
Query: 62 TNAAKDFVQYLVRSGQVNERDVPVENIPMTPTGPS 96
+NAA+DFV YLVR +V +VP I P+GPS
Sbjct: 63 SNAARDFVNYLVRINEVKSEEVPAVGIVPPPSGPS 97
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 66.6 bits (162), Expect = 4e-16
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIA----GIGYVGAGNSTNKKDAQTN 63
KA LN++ QK Q E+ GP H + F+ E+ I G + +NKK A +
Sbjct: 29 KARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQS 88
Query: 64 AAKDFVQYLVRSGQVNE 80
A V+ L G +
Sbjct: 89 CALSLVRQLYHLGVIEA 105
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 81
Score = 56.2 bits (135), Expect = 2e-12
Identities = 12/65 (18%), Positives = 21/65 (32%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K L S + + + E R+ +G G N K A AA++
Sbjct: 9 KRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAEN 68
Query: 68 FVQYL 72
++
Sbjct: 69 ALRDK 73
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 55.4 bits (133), Expect = 4e-12
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
+N + QK ++ + QRF+C+ +I Y G G+ K++A+ AAK+
Sbjct: 2 IGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMY-GTGSGVTKQEAKQLAAKE 60
Query: 68 FVQYLVRS 75
Q L++S
Sbjct: 61 AYQKLLKS 68
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 53.1 bits (127), Expect = 3e-11
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 1 MSGD--GLVKAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNK 57
M+ D G LN++ Q + + + +GP H +RF + +K
Sbjct: 1 MASDTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRF-TFQVLIDEKEFPEAKGRSK 59
Query: 58 KDAQTNAAKDFVQYLVRSGQVNER 81
++A+ AAK V L +V+
Sbjct: 60 QEARNAAAKLAVDILDNENKVDCH 83
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 68
Score = 52.3 bits (125), Expect = 5e-11
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E QK K+ PE+ + GP H+++F+ E +I +G G S KK+A+ AA
Sbjct: 3 KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS--KKEAEQRAA 60
Query: 66 KDFVQYL 72
++ ++ L
Sbjct: 61 EELIKLL 67
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 69
Score = 51.8 bits (124), Expect = 8e-11
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 8 KAFLNEWCQKNSK-QPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
K L E Q K PE+ VR + F+ E+R+ G G KK+A+ AA
Sbjct: 3 KTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTI-ATGKGRTKKEAEKEAA 61
Query: 66 KDFVQYLV 73
+ + L+
Sbjct: 62 RIAYEKLL 69
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 51.5 bits (123), Expect = 1e-10
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
L+E+ Q+ K + F + I G+ Y G+G +++KK A+ AA+
Sbjct: 12 VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTY-GSGTASSKKLAKNKAARA 70
Query: 68 FVQYLV 73
++ L+
Sbjct: 71 TLEILI 76
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 76
Score = 48.1 bits (114), Expect = 3e-09
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
+ ++E K + F +R GP H + F+ + V G KK ++ AA+
Sbjct: 10 ISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIV--GSIVTEGEGNGKKVSKKRAAE 67
Query: 67 DFVQYL 72
+ L
Sbjct: 68 KMLVEL 73
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 48.1 bits (114), Expect = 3e-09
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 1 MSGD---GLVKAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTN 56
M+GD G LN + QK ++ + +GP H +RF ++ I G + G +
Sbjct: 6 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPE-GEGRS 64
Query: 57 KKDAQTNAAKDFVQYL 72
KK+A+ AAK V+ L
Sbjct: 65 KKEAKNAAAKLAVEIL 80
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 47.5 bits (112), Expect = 5e-09
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
+N QK ++ A+G + F + ++ G G + K++A+ AAK
Sbjct: 17 IGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKM-GQKEYSIGTGSTKQEAKQLAAKL 75
Query: 68 FVQYL 72
+
Sbjct: 76 AYLQI 80
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 71
Score = 44.8 bits (106), Expect = 4e-08
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 8 KAFLNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
LNE ++D + +G H + F+ + + G + G+G + KK A+ AA+
Sbjct: 7 VMILNELRPG----LKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRN--KKLAKARAAQ 60
Query: 67 DFVQYL 72
+ +
Sbjct: 61 SALATV 66
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded
RNA-dependent protein kinase activator A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 43.9 bits (103), Expect = 1e-07
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 8 KAFLNEWCQKNSKQPEFDVRA-AGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAK 66
L+E+ K P ++ H F + + I G G S KK A+ AA+
Sbjct: 5 IQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCTGEGTS--KKLAKHRAAE 62
Query: 67 DFVQYL 72
+ L
Sbjct: 63 AAINIL 68
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A,
second dsRBD {Xenopus laevis [TaxId: 8355]}
Length = 69
Score = 41.6 bits (97), Expect = 6e-07
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 8 KAFLNEWCQKNSKQ-PEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAA 65
L E + + PE+ + +GP H++ F R+ +V G+ T+K+ A+ AA
Sbjct: 3 VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRV--ETFVETGSGTSKQVAKRVAA 60
Query: 66 KDFVQYL 72
+ +
Sbjct: 61 EKLLTKF 67
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l
(2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 128
Score = 42.8 bits (100), Expect = 7e-07
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
K L EWC++ + F + +A Y +KK A+ AA
Sbjct: 29 KMCLLEWCRREKLPQPVY-ETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIV 87
Query: 68 FVQYL-VRSGQVNE 80
++ + G++ E
Sbjct: 88 CLRSQGLPEGRLGE 101
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 41.4 bits (97), Expect = 1e-06
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 11 LNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
LN+ ++ + +GP H F + + G Y +G S KK A+ + A +
Sbjct: 18 LNQIRP----GLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPS--KKTAKLHVAVKVL 71
Query: 70 QYL 72
Q +
Sbjct: 72 QAM 74
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 73
Score = 38.7 bits (90), Expect = 9e-06
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 11 LNEWCQKNSKQPEFD-VRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFV 69
LNE ++ + GP H F+ + + G + G+G + KK A+ +AA+ +
Sbjct: 13 LNEIK----PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPT--KKKAKLHAAEKAL 66
Query: 70 QYLVR 74
+ V+
Sbjct: 67 RSFVQ 71
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 36.7 bits (84), Expect = 6e-05
Identities = 11/65 (16%), Positives = 21/65 (32%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
L E + + R + ++ G+ T+KK A+ NAA
Sbjct: 12 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAK 71
Query: 68 FVQYL 72
+ +
Sbjct: 72 MLLRV 76
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 34.1 bits (77), Expect = 7e-04
Identities = 13/65 (20%), Positives = 26/65 (40%)
Query: 8 KAFLNEWCQKNSKQPEFDVRAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKD 67
+ L + Q ++ + + +R +++ V G NKK A+ NAA+
Sbjct: 9 ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEA 68
Query: 68 FVQYL 72
+ L
Sbjct: 69 MLLQL 73
>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein,
PGRP-S {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 25.9 bits (56), Expect = 1.2
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 45 GIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNERDV 83
GI ++G AA+ + V G + V
Sbjct: 99 GISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYV 137
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.5 bits (55), Expect = 2.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 32 KHRQRFLCELRIAGIGYVGAGNST 55
+Q + L I +G G G S+
Sbjct: 24 NLKQEDVNSLTILVMGKGGVGKSS 47
>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb
(Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 174
Score = 25.1 bits (54), Expect = 2.6
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 27 RAAGPKHRQRFLCELRIAGIGYVGAGNSTNKKDAQTNAAKDFVQYLVRSGQVNER 81
R + GI +G + +AAK+ + + V G ++
Sbjct: 81 RGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPA 135
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 25.1 bits (54), Expect = 2.8
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 13/44 (29%)
Query: 63 NAAKDFVQYLVRSG----QVNERDVPVENIPMTPTGPSVTVNTS 102
A F+ +L +G QV P+ P G + S
Sbjct: 47 PQAFKFLDWLHLAGCSLWQVL---------PLVPPGKRGNEDGS 81
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 24.2 bits (51), Expect = 4.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 41 LRIAGIGYVGAGNST 55
LR+ +G G ST
Sbjct: 1 LRMVIVGKPNVGKST 15
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 24.5 bits (52), Expect = 4.6
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 59 DAQTNAAKDFVQYLVRSG----QVNERDVPVENIPMTPTG 94
+ ++ ++L+++G Q+ + V E IP T G
Sbjct: 477 RGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAG 516
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 24.3 bits (51), Expect = 4.8
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 41 LRIAGIGYVGAGNST 55
+++A +G G ST
Sbjct: 9 IKVAIVGRPNVGKST 23
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas
syringae pv. tomato [TaxId: 323]}
Length = 222
Score = 24.0 bits (51), Expect = 5.1
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 41 LRIAGIGYVGAGNST 55
LR G V G ST
Sbjct: 10 LRFLTCGNVDDGKST 24
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 122
Score = 23.8 bits (51), Expect = 5.9
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 56 NKKDAQTNAAKDFVQYLVRSGQVN------ERDVPVENIPMTPTGPS 96
N + + ++ Q L S + E DV IP + +GPS
Sbjct: 74 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGSGPS 120
>d1fvpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390)
{Photobacterium phosphoreum [TaxId: 659]}
Length = 231
Score = 23.9 bits (51), Expect = 7.2
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 77 QVNERDVPVENIPMTPTGPSVTVNTSKRFSFIRRSSIGLP 116
V + + P G + V + + + LP
Sbjct: 52 LVKKDSEDKKLAPFITLGEKLYVLATSENTVDIAAKYALP 91
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393
{Escherichia coli o6 [TaxId: 217992]}
Length = 187
Score = 23.4 bits (50), Expect = 8.7
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 1 MSGDGLVKAFLNEWCQKNSKQPEFDVRAAGPKHRQRF 37
+ +V+ L E Q + F++++ P Q
Sbjct: 113 QTVPQIVEKILRERHQMRGQDFVFNLKSEYPAREQVM 149
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 23.4 bits (50), Expect = 9.7
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 6 LVKAFLNEWCQKNSKQPEFDVRAAGPK 32
L + F + + S + +V AGP+
Sbjct: 291 LARLFQENFQKYASGVAK-EVAEAGPR 316
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.389
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 432,818
Number of extensions: 17623
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 33
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)