BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14234
(779 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 95/114 (83%)
Query: 117 RPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRL 176
+PGR TNQLQY+ K VMKA+WKH AWPF +PVDA+ L LPDYHK+I QPMD+GTIK+RL
Sbjct: 25 KPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRL 84
Query: 177 ENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230
ENNYYW+ E +QDF TMFTNCY+YNKP +D+VLMAQ LE++FL K+ MP EE
Sbjct: 85 ENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEE 138
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPF PVD KLGL DY IIK+PMD+GT+++++ N Y A E D +F+
Sbjct: 46 KHQ-FAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFT 104
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA+ L +F + A MP E
Sbjct: 105 NCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 95/114 (83%)
Query: 117 RPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRL 176
+PGR TNQLQY+ K VMKA+WKH AWPF +PVDA+ L LPDYHK+I QPMD+GTIK+RL
Sbjct: 25 KPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRL 84
Query: 177 ENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230
ENNYYW+ E +QDF TMFTNCY+YNKP +D+VLMAQ LE++FL K+ MP EE
Sbjct: 85 ENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEE 138
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPF PVD KLGL DY IIK+PMD+GT+++++ N Y A E D +F+
Sbjct: 46 KHQ-FAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFT 104
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA+ L +F + A MP E
Sbjct: 105 NCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQE 137
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 117 RPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRL 176
+PGR TNQLQY+ V+K +WKH AWPF++PVDAI LNLPDYHK+I PMD+GTIKKRL
Sbjct: 14 KPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRL 73
Query: 177 ENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEEVVL 233
ENNYYWS E +QDF TMFTNCY+YNKP +D+VLMAQ LE++FL K+ MP EEV L
Sbjct: 74 ENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEEVEL 130
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPFY PVD KL L DY IIK PMD+GT++K++ N Y +A E D +F+
Sbjct: 35 KHQ-FAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFT 93
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA+ L +F + A+MP E
Sbjct: 94 NCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQE 126
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 117 RPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRL 176
+PGR TNQLQY+ V+K +WKH AWPF++PVDAI LNLPDYHK+I PMD+GTIKKRL
Sbjct: 12 KPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRL 71
Query: 177 ENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEEVVL 233
ENNYYWS E +QDF TMFTNCY+YNKP +D+VLMAQ LE++FL K+ MP EEV L
Sbjct: 72 ENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEEVEL 128
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPFY PVD KL L DY IIK PMD+GT++K++ N Y +A E D +F+
Sbjct: 33 KHQ-FAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFT 91
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA+ L +F + A+MP E
Sbjct: 92 NCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQE 124
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 94/114 (82%)
Query: 117 RPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRL 176
+PGR TNQLQY+ V+K +WKH AWPF++PVDAI LNLPDYHK+I PMD+GTIKKRL
Sbjct: 10 KPGRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRL 69
Query: 177 ENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230
ENNYYWS E +QDF TMFTNCY+YNKP +D+VLMAQ LE++FL K+ MP EE
Sbjct: 70 ENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEE 123
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPFY PVD KL L DY IIK PMD+GT++K++ N Y +A E D +F+
Sbjct: 31 KHQ-FAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFT 89
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA+ L +F + A+MP E
Sbjct: 90 NCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQE 122
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 100/122 (81%)
Query: 109 PPVVPPKHRPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMD 168
PP ++P R TNQLQY+++ V+K +WKH AWPF +PVDA+ LNLPDY+K+I PMD
Sbjct: 6 PPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMD 65
Query: 169 LGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228
+GTIKKRLENNYYW+ +E IQDF TMFTNCY+YNKPG+D+VLMA+ LE+LFL KI +P+
Sbjct: 66 MGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 125
Query: 229 EE 230
EE
Sbjct: 126 EE 127
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPF PVD KL L DY+ IIK PMD+GT++K++ N Y A+E D +F+
Sbjct: 35 KHQ-FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFT 93
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA L +F + ++P E
Sbjct: 94 NCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 126
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 100/122 (81%)
Query: 109 PPVVPPKHRPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMD 168
PP ++P R TNQLQY+++ V+K +WKH AWPF +PVDA+ LNLPDY+K+I PMD
Sbjct: 10 PPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMD 69
Query: 169 LGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228
+GTIKKRLENNYYW+ +E IQDF TMFTNCY+YNKPG+D+VLMA+ LE+LFL KI +P+
Sbjct: 70 MGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 129
Query: 229 EE 230
EE
Sbjct: 130 EE 131
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPF PVD KL L DY+ IIK PMD+GT++K++ N Y A+E D +F+
Sbjct: 39 KHQ-FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFT 97
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA L +F + ++P E
Sbjct: 98 NCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 130
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 100/122 (81%)
Query: 109 PPVVPPKHRPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMD 168
PP ++P R TNQLQY+++ V+K +WKH AWPF +PVDA+ LNLPDY+K+I PMD
Sbjct: 6 PPETSNPNKPKRETNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMD 65
Query: 169 LGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228
+GTIKKRLENNYYW+ +E IQDF TMFTNCY+YNKPG+D+VLMA+ LE+LFL KI +P+
Sbjct: 66 MGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 125
Query: 229 EE 230
EE
Sbjct: 126 EE 127
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPF PVD KL L DY+ IIK PMD+GT++K++ N Y A+E D +F+
Sbjct: 35 KHQ-FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFT 93
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA L +F + ++P E
Sbjct: 94 NCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 126
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 98/120 (81%)
Query: 109 PPVVPPKHRPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMD 168
PP ++P R TNQLQY+++ V+K +WKH AWPF +PVDA+ LNLPDY+K+I PMD
Sbjct: 26 PPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMD 85
Query: 169 LGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228
+GTIKKRLENNYYW+ +E IQDF TMFTNCY+YNKPG+D+VLMA+ LE+LFL KI +P+
Sbjct: 86 MGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 145
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPF PVD KL L DY+ IIK PMD+GT++K++ N Y A+E D +F+
Sbjct: 55 KHQ-FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFT 113
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478
NCY YN P ++V MA L +F + ++P
Sbjct: 114 NCYIYNKPGDDIVLMAEALEKLFLQKINELP 144
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 86/112 (76%)
Query: 119 GRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLEN 178
GR TNQLQY+ K V KA+WKH AWPF +PVDA+ L LPDYHK+I QP D GTIK+RLEN
Sbjct: 7 GRVTNQLQYLHKVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLEN 66
Query: 179 NYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230
NYYW+ E QDF T FTNCY+YNKP +D+VL AQ LE++FL K+ P EE
Sbjct: 67 NYYWAASECXQDFNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQEE 118
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPF PVD KLGL DY IIK+P D GT+++++ N Y A E D F+
Sbjct: 26 KHQ-FAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFT 84
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V A+ L +F + A P E
Sbjct: 85 NCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQE 117
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 86/112 (76%)
Query: 119 GRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLEN 178
GR TNQLQY+ K V KA+WKH AWPF +PVDA+ L LPDYHK+I QP D GTIK+RLEN
Sbjct: 1 GRVTNQLQYLHKVVXKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLEN 60
Query: 179 NYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230
NYYW+ E QDF T FTNCY+YNKP +D+VL AQ LE++FL K+ P EE
Sbjct: 61 NYYWAASECXQDFNTXFTNCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQEE 112
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KHQ +AWPF PVD KLGL DY IIK+P D GT+++++ N Y A E D F+
Sbjct: 20 KHQ-FAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFT 78
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V A+ L +F + A P E
Sbjct: 79 NCYIYNKPTDDIVLXAQTLEKIFLQKVASXPQE 111
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 87/112 (77%)
Query: 119 GRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLEN 178
GR TNQLQY+ K V+K +WKH +WPF PVDA+ L LPDY+ +I PMDL TIKKRLEN
Sbjct: 8 GRLTNQLQYLQKVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLEN 67
Query: 179 NYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230
YY E I+DF TMF+NCY+YNKPG+D+VLMAQ LE+LF+ K++ MP EE
Sbjct: 68 KYYAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQMPQEE 119
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KH +++WPF PVD KL L DY+ IIK PMDL T++K++ N+ Y A E +D +FS
Sbjct: 27 KH-SFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDFNTMFS 85
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN P ++V MA+ L +F + ++MP E
Sbjct: 86 NCYLYNKPGDDIVLMAQALEKLFMQKLSQMPQE 118
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 82/106 (77%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K CS I+ E+F KKH YAWPFY PVDVE LGL DY DIIK PMD+ T++ K+ R Y+
Sbjct: 25 KCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRD 84
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
A+EF DVRL+FSNCYKYNPPDH VV MAR+L VFE RFAKMPDE
Sbjct: 85 AQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 113 PPKHRPGRNTNQLQYIVKNVMKAVWKHPHA---WPFHEPVDAINLNLPDYHKVITQPMDL 169
P + + + QL+ ++K ++ HA WPF++PVD L L DY +I PMD+
Sbjct: 12 PAPEKSSKVSEQLK-CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDM 70
Query: 170 GTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSE 229
TIK +LE Y +E D MF+NCY YN P +VV MA+ L+ +F + MP E
Sbjct: 71 STIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 82/106 (77%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K CS I+ E+F KKH YAWPFY PVDVE LGL DY DIIK PMD+ T++ K+ R Y+
Sbjct: 23 KCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRD 82
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
A+EF DVRL+FSNCYKYNPPDH VV MAR+L VFE RFAKMPDE
Sbjct: 83 AQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 128
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 113 PPKHRPGRNTNQLQYIVKNVMKAVWKHPHA---WPFHEPVDAINLNLPDYHKVITQPMDL 169
P + + + QL+ ++K ++ HA WPF++PVD L L DY +I PMD+
Sbjct: 10 PAPEKSSKVSEQLK-CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDM 68
Query: 170 GTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSE 229
TIK +LE Y +E D MF+NCY YN P +VV MA+ L+ +F + MP E
Sbjct: 69 STIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 128
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 162 bits (409), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 89/114 (78%)
Query: 117 RPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRL 176
+ GR TNQLQ++ + V+KA+WKH +WPF +PVDA+ L LPDY+ +I PMDL TIKKRL
Sbjct: 7 KSGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRL 66
Query: 177 ENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230
EN YY E I+DF TMF+NCY+YNK G+D+V+MAQ LE+LF+ K++ MP EE
Sbjct: 67 ENKYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQMPQEE 120
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 388 KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447
KH ++WPF PVD KL L DY+ IIK PMDL T++K++ N+ Y+ A E +D +FS
Sbjct: 28 KH-GFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDFNTMFS 86
Query: 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
NCY YN ++V MA+ L +F + ++MP E
Sbjct: 87 NCYLYNKTGDDIVVMAQALEKLFMQKLSQMPQE 119
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 83/105 (79%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K+C+ I+ EL KKH YAWPFY PVD LGL DY DIIK PMDL TV++KM NR Y+
Sbjct: 10 KHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRD 69
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479
A+EFA DVRL+FSNCYKYNPPDH+VV MAR+L VFE R+AKMPD
Sbjct: 70 AQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 114
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 119 GRNTNQLQY---IVKNVMKAVWKHP-HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKK 174
G+ + QL++ I+K ++ KH +AWPF++PVDA L L DYH +I PMDL T+K+
Sbjct: 3 GKLSEQLKHCNGILKELLSK--KHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKR 60
Query: 175 RLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMP 227
++EN Y +E D MF+NCY YN P DVV MA+ L+ +F + MP
Sbjct: 61 KMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMP 113
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 83/105 (79%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K+C+ I+ EL KKH YAWPFY PVD LGL DY DIIK PMDL TV++KM NR Y+
Sbjct: 8 KHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRD 67
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479
A+EFA DVRL+FSNCYKYNPPDH+VV MAR+L VFE R+AKMPD
Sbjct: 68 AQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 112
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 119 GRNTNQLQY---IVKNVMKAVWKHP-HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKK 174
G + QL++ I+K ++ KH +AWPF++PVDA L L DYH +I PMDL T+K+
Sbjct: 1 GSHMEQLKHCNGILKELLSK--KHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKR 58
Query: 175 RLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMP 227
++EN Y +E D MF+NCY YN P DVV MA+ L+ +F + MP
Sbjct: 59 KMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMP 111
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 83/105 (79%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K+C+ I+ EL KKH YAWPFY PVD LGL DY DIIK PMDL TV++KM NR Y+
Sbjct: 4 KHCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRD 63
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479
A+EFA DVRL+FSNCYKYNPPDH+VV MAR+L VFE R+AKMPD
Sbjct: 64 AQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD 108
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 57/90 (63%)
Query: 141 HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200
+AWPF++PVDA L L DYH +I PMDL T+K+++EN Y +E D MF+NCY
Sbjct: 21 YAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYK 80
Query: 201 YNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230
YN P DVV MA+ L+ +F + MP E
Sbjct: 81 YNPPDHDVVAMARKLQDVFEFRYAKMPDLE 110
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 156 bits (395), Expect = 4e-38, Method: Composition-based stats.
Identities = 72/106 (67%), Positives = 83/106 (78%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K CS I+ E+F KKH YAWPFY PVDVE LGL DY DIIK PMD+ T++ K+ +R Y+
Sbjct: 12 KCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRD 71
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
A+EF DVRL+FSNCYKYNPPDH VV MAR+L VFE RFAKMPDE
Sbjct: 72 AQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/89 (44%), Positives = 54/89 (60%)
Query: 141 HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200
+AWPF++PVD L L DY +I PMD+ TIK +LE+ Y +E D MF+NCY
Sbjct: 29 YAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYK 88
Query: 201 YNKPGEDVVLMAQNLEQLFLTKITGMPSE 229
YN P +VV MA+ L+ +F + MP E
Sbjct: 89 YNPPDHEVVAMARKLQDVFEMRFAKMPDE 117
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 82/106 (77%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K+CSEI+ E+ KKH YAWPFY PVD + LGL +Y+D++K PMDLGT++ KM N+ YK
Sbjct: 17 KHCSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKD 76
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
A EFA DVRL+F NCYKYNPPDH VV MAR L VFE FAK+PDE
Sbjct: 77 AYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDE 122
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 55/92 (59%)
Query: 140 PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199
P+AWPF+ PVDA L L +Y+ V+ PMDLGTIK +++N Y E D MF NCY
Sbjct: 33 PYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCY 92
Query: 200 VYNKPGEDVVLMAQNLEQLFLTKITGMPSEEV 231
YN P +VV MA+ L+ +F +P E +
Sbjct: 93 KYNPPDHEVVAMARTLQDVFELHFAKIPDEPI 124
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 152 bits (383), Expect = 8e-37, Method: Composition-based stats.
Identities = 69/103 (66%), Positives = 79/103 (76%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K CS I+ E+F KKH YAWPFY PVDVE LGL DY DIIK PMD+ T++ K+ R Y+
Sbjct: 4 KCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRD 63
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKM 477
A+EF DVRL+FSNCYKYNPPDH VV MAR+L VFE RFAKM
Sbjct: 64 AQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 106
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 51/86 (59%)
Query: 141 HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200
+AWPF++PVD L L DY +I PMD+ TIK +LE Y +E D MF+NCY
Sbjct: 21 YAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 80
Query: 201 YNKPGEDVVLMAQNLEQLFLTKITGM 226
YN P +VV MA+ L+ +F + M
Sbjct: 81 YNPPDHEVVAMARKLQDVFEMRFAKM 106
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 146 bits (368), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/104 (66%), Positives = 77/104 (74%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
+YC I+ E+ KKH YAWPFY PVD E L L DY DIIK PMDL TV++KM R Y
Sbjct: 10 RYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPD 69
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478
A+ FA DVRL+FSNCYKYNPPDH VV MAR+L VFE RFAKMP
Sbjct: 70 AQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 113
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 54/87 (62%)
Query: 141 HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200
+AWPF++PVDA L L DYH +I PMDL T+K++++ Y + D MF+NCY
Sbjct: 27 YAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYK 86
Query: 201 YNKPGEDVVLMAQNLEQLFLTKITGMP 227
YN P +VV MA+ L+ +F + MP
Sbjct: 87 YNPPDHEVVAMARKLQDVFEMRFAKMP 113
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 144 bits (363), Expect = 2e-34, Method: Composition-based stats.
Identities = 68/103 (66%), Positives = 76/103 (73%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
+YC I+ E+ KKH YAWPFY PVD E L L DY DIIK PMDL TV++KM R Y
Sbjct: 15 RYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPD 74
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKM 477
A+ FA DVRL+FSNCYKYNPPDH VV MAR+L VFE RFAKM
Sbjct: 75 AQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 117
Score = 82.4 bits (202), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 141 HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200
+AWPF++PVDA L L DYH +I PMDL T+K++++ Y + D MF+NCY
Sbjct: 32 YAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYK 91
Query: 201 YNKPGEDVVLMAQNLEQLFLTKITGM 226
YN P +VV MA+ L+ +F + M
Sbjct: 92 YNPPDHEVVAMARKLQDVFEMRFAKM 117
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 142 bits (358), Expect = 7e-34, Method: Composition-based stats.
Identities = 68/105 (64%), Positives = 76/105 (72%)
Query: 375 KYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKT 434
K CS I+ E F KKH YAWPFY PVDVE LGL DY DIIK P D T++ K+ +R Y+
Sbjct: 10 KCCSGILKEXFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRD 69
Query: 435 AKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479
A+EF DVRL FSNCYKYNPPDH VV AR+L VFE RFAK PD
Sbjct: 70 AQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRFAKXPD 114
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 48/87 (55%)
Query: 141 HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200
+AWPF++PVD L L DY +I P D TIK +LE+ Y +E D F+NCY
Sbjct: 27 YAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYK 86
Query: 201 YNKPGEDVVLMAQNLEQLFLTKITGMP 227
YN P +VV A+ L+ +F + P
Sbjct: 87 YNPPDHEVVAXARKLQDVFEXRFAKXP 113
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/71 (85%), Positives = 67/71 (94%)
Query: 616 DVAKPMSYDEKRQLSLDINKLPGDKLGKVVHIIQSREPSLREPNPDEIEIDFETLKPSTL 675
D KPMSY+EKRQLSLDINKLPG+KLG+VVHIIQSREPSL+ NPDEIEIDFETLKPSTL
Sbjct: 13 DKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTL 72
Query: 676 RELEQYVSSCL 686
RELE+YV+SCL
Sbjct: 73 RELERYVTSCL 83
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 115 KHRPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKK 174
K + R+ +QL +K++++ V H AWPF EPV P Y++VI PMDL T+ +
Sbjct: 6 KSKEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSE 63
Query: 175 RLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
RL+N YY S K + D +FTNC YN P + A LE+ F +KI
Sbjct: 64 RLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKI 112
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 387 KKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446
K HQ+ AWPF PV ++ Y+++I+ PMDL T+ ++++NR Y + K F D++ +F
Sbjct: 28 KSHQS-AWPFMEPV--KRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVF 84
Query: 447 SNCYKYNPPDHNVVTMARQLSAVF 470
+NC +YNPP+ A L F
Sbjct: 85 TNCKEYNPPESEYYKCANILEKFF 108
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENN 179
R+ +QL +K++++ V H AWPF EPV P Y++VI PMDL T+ +RL+N
Sbjct: 9 RDPDQLYSTLKSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNR 66
Query: 180 YYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
YY S K + D +FTNC YN P + A LE+ F +KI
Sbjct: 67 YYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKI 110
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 387 KKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446
K HQ+ AWPF PV ++ Y+++I+ PMDL T+ ++++NR Y + K F D++ +F
Sbjct: 26 KSHQS-AWPFMEPV--KRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVF 82
Query: 447 SNCYKYNPPDHNVVTMARQLSAVF 470
+NC +YNPP+ A L F
Sbjct: 83 TNCKEYNPPESEYYKCANILEKFF 106
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188
+K V++++ H AWPF EPVD + PDY+ VI +PMDL T+++R++ YY E +
Sbjct: 25 LKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFV 82
Query: 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGM 226
D T +F NC YN A+ LE F+ K+ G
Sbjct: 83 ADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGF 120
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PVD DY+ +IK+PMDL T+ ++++ R Y+ EF D+ IF NC Y
Sbjct: 38 AWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 95
Query: 453 NPPDHNVVTMARQLSAVF 470
NP D A L + F
Sbjct: 96 NPSDSPFYQCAEVLESFF 113
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188
+K V++++ H AWPF EPVD + PDY+ VI +PMDL T+++R++ YY E +
Sbjct: 18 LKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFV 75
Query: 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGM 226
D T +F NC YN A+ LE F+ K+ G
Sbjct: 76 ADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGF 113
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PVD DY+ +IK+PMDL T+ ++++ R Y+ EF D+ IF NC Y
Sbjct: 31 AWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTAIFDNCRYY 88
Query: 453 NPPDHNVVTMARQLSAVF 470
NP D A L + F
Sbjct: 89 NPSDSPFYQCAEVLESFF 106
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188
+K V++++ H AWPF EPVD + PDY+ VI +PMDL T+++R++ YY E +
Sbjct: 18 LKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFV 75
Query: 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGM 226
D T +F NC YN A+ LE F+ K+ G
Sbjct: 76 ADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGF 113
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PVD DY+ +IK+PMDL T+ ++++ R Y+ EF D+ IF NC Y
Sbjct: 31 AWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 88
Query: 453 NPPDHNVVTMARQLSAVF 470
NP D A L + F
Sbjct: 89 NPSDSPFYQCAEVLESFF 106
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188
+K V++++ H AWPF EPVD + PDY+ VI +PMDL T+++R++ YY E +
Sbjct: 77 LKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFV 134
Query: 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228
D T +F NC YN A+ LE F+ K+ G +
Sbjct: 135 ADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PVD DY+ +IK+PMDL T+ ++++ R Y+ EF D+ IF NC Y
Sbjct: 90 AWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 147
Query: 453 NPPDHNVVTMARQLSAVF 470
NP D A L + F
Sbjct: 148 NPSDSPFYQCAEVLESFF 165
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188
+K V++++ H AWPF EPVD + PDY+ VI +PMDL T+++R++ YY E +
Sbjct: 77 LKRVLRSLQAHKMAWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFV 134
Query: 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228
D T +F NC YN A+ LE F+ K+ G +
Sbjct: 135 ADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PVD DY+ +IK+PMDL T+ ++++ R Y+ EF D+ IF NC Y
Sbjct: 90 AWPFLEPVDPNDA--PDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 147
Query: 453 NPPDHNVVTMARQLSAVF 470
NP D A L + F
Sbjct: 148 NPSDSPFYQCAEVLESFF 165
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYW 182
+QL +KN++ + HP AWPF EPV PDY++VI P+DL T+ +RL + YY
Sbjct: 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYV 63
Query: 183 SGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
+ K + D + NC YN P + A LE+ F K+
Sbjct: 64 TRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKL 104
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PV +K DY+++I+ P+DL T+ +++R+R Y T K F D++ + +NC +Y
Sbjct: 25 AWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82
Query: 453 NPPDHNVVTMARQLSAVF 470
NPPD A L F
Sbjct: 83 NPPDSEYCRCASALEKFF 100
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYW 182
+QL +KN++ + HP AWPF EPV PDY++VI P+DL T+ +RL + YY
Sbjct: 2 DQLYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYYV 59
Query: 183 SGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
+ K + D + NC YN P + A LE+ F K+
Sbjct: 60 TRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKL 100
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PV +K DY+++I+ P+DL T+ +++R+R Y T K F D++ + +NC +Y
Sbjct: 21 AWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 78
Query: 453 NPPDHNVVTMARQLSAVF 470
NPPD A L F
Sbjct: 79 NPPDSEYCRCASALEKFF 96
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 395 PFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNP 454
PF PVD + LG+ DYFDI+K PMDL T+++K+ Y+ ++ DD+ L+F+N + YN
Sbjct: 37 PFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNR 96
Query: 455 PDHNVVTMARQLSAVFE 471
V +LS VFE
Sbjct: 97 KTSRVYKYCSKLSEVFE 113
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 133 MKAVWKH-PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDF 191
++A+++ P + PF +PVD L +PDY ++ PMDL TIK++L+ Y + + D
Sbjct: 25 LEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDI 84
Query: 192 TTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
MF N ++YN+ V L ++F +I
Sbjct: 85 WLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEI 116
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 395 PFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNP 454
PF PVD + LG+ DYFDI+K PMDL T+++K+ Y+ ++ DDV L+F+N + YN
Sbjct: 34 PFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNR 93
Query: 455 PDHNVVTMARQLSAVFE 471
V +L+ VFE
Sbjct: 94 KTSRVYKFCSKLAEVFE 110
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 133 MKAVWKH-PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDF 191
++A+++ P + PF +PVD L +PDY ++ PMDL TIK++L+ Y + + D
Sbjct: 22 LEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDV 81
Query: 192 TTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
MF N ++YN+ V L ++F +I
Sbjct: 82 WLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEI 113
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 395 PFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNP 454
PF PVD + LG+ DYFDI+K PMDL T+++K+ Y+ ++ DDV L+F+N + YN
Sbjct: 32 PFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNR 91
Query: 455 PDHNVVTMARQLSAVFE 471
V +L+ VFE
Sbjct: 92 KTSRVYKFCSKLAEVFE 108
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 133 MKAVWKH-PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDF 191
++A+++ P + PF +PVD L +PDY ++ PMDL TIK++L+ Y + + D
Sbjct: 20 LEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDV 79
Query: 192 TTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
MF N ++YN+ V L ++F +I
Sbjct: 80 WLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEI 111
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188
+K V++++ H AWPF EPVD + PDY+ VI +P DL T ++R++ YY E +
Sbjct: 77 LKRVLRSLQAHKXAWPFLEPVDPNDA--PDYYGVIKEPXDLATXEERVQRRYYEKLTEFV 134
Query: 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228
D T +F NC YN A+ LE F+ K+ G +
Sbjct: 135 ADXTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PVD DY+ +IK+P DL T ++++ R Y+ EF D IF NC Y
Sbjct: 90 AWPFLEPVDPNDA--PDYYGVIKEPXDLATXEERVQRRYYEKLTEFVADXTKIFDNCRYY 147
Query: 453 NPPDHNVVTMARQLSAVF 470
NP D A L + F
Sbjct: 148 NPSDSPFYQCAEVLESFF 165
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
AWPF PV+ E++ DY+D IK+PMDL T+ K+ + Y+ ++F D RL+F+NC Y
Sbjct: 31 AWPFLQPVNKEEV--PDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 88
Query: 453 NPPDHNVVTMARQLSAVFEDRFAKMPDESNL 483
N + + A +L F ++ ++P+ S+L
Sbjct: 89 NGENTSYYKYANRLEKFFNNKVKEIPEYSHL 119
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188
++N++ + H AWPF +PV+ +PDY+ I +PMDL T++ +LE+N Y ++ I
Sbjct: 18 IQNILTELQNHAAAWPFLQPVNK--EEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFI 75
Query: 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEEVVLD 234
D +F NC +YN A LE+ F K+ +P ++D
Sbjct: 76 YDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHLID 121
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTY 432
W K C E++ +F + PF PVD+ + DY DII PMD GTVR+ + Y
Sbjct: 11 WKKQCKELVNLIFQCEDSE---PFRQPVDL--VEYPDYRDIIDTPMDFGTVRETLDAGNY 65
Query: 433 KTAKEFADDVRLIFSNCYKYNPPDHN-VVTMARQLSAVFEDRFAKM 477
+ EF D+RLIFSN Y P + + +M +LSA+FE++ K+
Sbjct: 66 DSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKI 111
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188
K ++ +++ + PF +PVD + PDY +I PMD GT+++ L+ Y S E
Sbjct: 15 CKELVNLIFQCEDSEPFRQPVDLVEY--PDYRDIIDTPMDFGTVRETLDAGNYDSPLEFC 72
Query: 189 QDFTTMFTNCYVY--NKPGEDVVLMAQNLEQLFLTKITGMPSE 229
+D +F+N Y NK + + M L LF K+ + S+
Sbjct: 73 KDIRLIFSNAKAYTPNKRSK-IYSMTLRLSALFEEKMKKISSD 114
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 127 YIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKE 186
Y V +V+KA H +WPF EPVD P+Y+++I PMD+ +++K+L Y + +E
Sbjct: 22 YKVLDVVKA---HKDSWPFLEPVDESYA--PNYYQIIKAPMDISSMEKKLNGGLYCTKEE 76
Query: 187 AIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLF 219
+ D TMF NC YN + M+ NLE+ F
Sbjct: 77 FVNDMKTMFRNCRKYNGESSEYTKMSDNLERCF 109
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 387 KKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446
K H++ +WPF PVD + +Y+ IIK PMD+ ++ KK+ Y T +EF +D++ +F
Sbjct: 29 KAHKD-SWPFLEPVD--ESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMF 85
Query: 447 SNCYKYNPPDHNVVTMARQLSAVF 470
NC KYN M+ L F
Sbjct: 86 RNCRKYNGESSEYTKMSDNLERCF 109
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 377 CSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAK 436
CS I+ E+ + H++ AWPF PV+++ + Y +IKKPMD T+R+K+ + Y +
Sbjct: 18 CSMILTEM--ETHED-AWPFLLPVNLKLV--PGYKKVIKKPMDFSTIREKLSSGQYPNLE 72
Query: 437 EFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFA 475
FA DVRL+F NC +N D ++ + FE ++
Sbjct: 73 TFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWT 111
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 117 RPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNL-PDYHKVITQPMDLGTIKKR 175
+P R+ ++ + ++ + H AWPF PV NL L P Y KVI +PMD TI+++
Sbjct: 6 KPKRDDSKDLALCSMILTEMETHEDAWPFLLPV---NLKLVPGYKKVIKKPMDFSTIREK 62
Query: 176 LENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKIT 224
L + Y + + D +F NC +N+ D+ N+ + F K T
Sbjct: 63 LSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWT 111
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTY 432
W K C E++ +F + PF PVD+ L DY DII PMD TVR+ + Y
Sbjct: 22 WKKQCEELLNLIFQCEDSE---PFRQPVDL--LEYPDYRDIIDTPMDFATVRETLEAGNY 76
Query: 433 KTAKEFADDVRLIFSNCYKYNPPDHN-VVTMARQLSAVFEDRFAKM 477
++ E DVRLIFSN Y P + + +M+ +LSA FE+ + +
Sbjct: 77 ESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSV 122
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 144 PFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203
PF +PVD L PDY +I PMD T+++ LE Y S E +D +F+N Y
Sbjct: 41 PFRQPVDL--LEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTP 98
Query: 204 PGEDVVL-MAQNLEQLFLTKITGMPSE 229
+ M+ L F I+ + S+
Sbjct: 99 SKRSRIYSMSLRLSAFFEEHISSVLSD 125
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 377 CSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAK 436
CS I+ E+ + H++ AWPF PV+++ + Y +IKKPMD T+R+K+ + Y +
Sbjct: 15 CSMILTEM--ETHED-AWPFLLPVNLKLV--PGYKKVIKKPMDFSTIREKLSSGQYPNLE 69
Query: 437 EFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFA 475
FA DVRL+F NC +N D ++ + FE ++
Sbjct: 70 TFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWT 108
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 139 HPHAWPFHEPVDAINLNL-PDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTN 197
H AWPF PV NL L P Y KVI +PMD TI+++L + Y + + D +F N
Sbjct: 25 HEDAWPFLLPV---NLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDN 81
Query: 198 CYVYNKPGEDVVLMAQNLEQLFLTKIT 224
C +N+ D+ N+ + F K T
Sbjct: 82 CETFNEDDSDIGRAGHNMRKYFEKKWT 108
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNY--YWSGKE 186
+ ++ ++ H + F +PV L +PDY+K+I PMDL TIKKRL+ +Y Y ++
Sbjct: 25 CERLLLFLYCHEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPED 81
Query: 187 AIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLF 219
+ DF +F NC +N+P +V LE F
Sbjct: 82 FVADFRLIFQNCAEFNEPDSEVANAGIKLENYF 114
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 370 TPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRN 429
TP+ + C ++ LF H+ + F PV L + DY+ IIK PMDL T++K+++
Sbjct: 18 TPIDKRKCERLL--LFLYCHE-MSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQE 71
Query: 430 --RTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFED 472
Y ++F D RLIF NC ++N PD V +L FE+
Sbjct: 72 DYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEE 116
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNY--YWSGKE 186
+ ++ ++ H + F +PV L +PDY+K+I PMDL TIKKRL+ +Y Y ++
Sbjct: 86 CERLLLFLYCHEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPED 142
Query: 187 AIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLF 219
+ DF +F NC +N+P +V LE F
Sbjct: 143 FVADFRLIFQNCAEFNEPDSEVANAGIKLENYF 175
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 370 TPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRN 429
TP+ + C ++ LF H+ + F PV L + DY+ IIK PMDL T++K+++
Sbjct: 79 TPIDKRKCERLL--LFLYCHE-MSLAFQDPV---PLTVPDYYKIIKNPMDLSTIKKRLQE 132
Query: 430 --RTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFED 472
Y ++F D RLIF NC ++N PD V +L FE+
Sbjct: 133 DYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEE 177
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
+WPF+ PV+ K + DY+ +I PMDL T+RK + Y++ + F DDV LI +N KY
Sbjct: 188 SWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 245
Query: 453 NPPDHNVVTMARQLSAV 469
N P+ A+++ V
Sbjct: 246 NGPESQYTKTAQEIVNV 262
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
+PF+TPV+ + + DY+ II +PMDL T+R+ +R R Y + +EF + + LI N Y
Sbjct: 65 TYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122
Query: 453 NPPDHNVVTMARQLSAVFEDRFAKMPDE 480
N P H++ +++ + + +++ + D+
Sbjct: 123 NGPKHSLTQISQSMLDLCDEKLKEKEDK 150
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSG 184
L IV M AV P +WPFH PV+ +PDY+KVI PMDL TI+K + + Y S
Sbjct: 174 LDNIVTQKMMAV---PDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSR 228
Query: 185 KEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKIT 224
+ + D + N YN P AQ + + +T
Sbjct: 229 ESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLT 268
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSG 184
L I+++++ + P+ +PFH PV+A + DY+K+IT+PMDL T+++ + Y S
Sbjct: 48 LSSILESIINDMRDLPNTYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKRLYPSR 105
Query: 185 KEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQL 218
+E + + N YN P + ++Q++ L
Sbjct: 106 EEFREHLELIVKNSATYNGPKHSLTQISQSMLDL 139
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
+WPF+ PV+ K + DY+ +I PMDL T+RK + Y++ + F DDV LI +N KY
Sbjct: 167 SWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 224
Query: 453 NPPDHNVVTMARQLSAV 469
N P+ A+++ V
Sbjct: 225 NGPESQYTKTAQEIVNV 241
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
+PF+TPV+ + + DY+ II +PMDL T+R+ +R R Y + +EF + + LI N Y
Sbjct: 44 TYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 101
Query: 453 NPPDHNVVTMARQLSAVFEDRFAKMPDE 480
N P H++ +++ + + +++ + D+
Sbjct: 102 NGPKHSLTQISQSMLDLCDEKLKEKEDK 129
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSG 184
L IV M AV P +WPFH PV+ +PDY+KVI PMDL TI+K + + Y S
Sbjct: 153 LDNIVTQKMMAV---PDSWPFHHPVNK--KFVPDYYKVIVNPMDLETIRKNISKHKYQSR 207
Query: 185 KEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKIT 224
+ + D + N YN P AQ + + +T
Sbjct: 208 ESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLT 247
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSG 184
L I+++++ + P+ +PFH PV+A + DY+K+IT+PMDL T+++ + Y S
Sbjct: 27 LSSILESIINDMRDLPNTYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKRLYPSR 84
Query: 185 KEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQL 218
+E + + N YN P + ++Q++ L
Sbjct: 85 EEFREHLELIVKNSATYNGPKHSLTQISQSMLDL 118
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
+WPF+ PV+ K + DY+ +I PMDL T+RK + Y++ + F DDV LI +N KY
Sbjct: 155 SWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 212
Query: 453 NPPDHNVVTMARQLSAV 469
N P+ A+++ V
Sbjct: 213 NGPESQYTKTAQEIVNV 229
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
+PF+TPV+ + + DY+ II +PMDL T+R+ +R R Y + +EF + + LI N Y
Sbjct: 32 TYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89
Query: 453 NPPDHNVVTMARQLSAVFEDRFAKMPDE 480
N P H++ +++ + + +++ + D+
Sbjct: 90 NGPKHSLTQISQSMLDLCDEKLKEKEDK 117
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSG 184
L IV M AV P +WPFH PV+ +PDY+KVI PMDL TI+K + + Y S
Sbjct: 141 LDNIVTQKMMAV---PDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSR 195
Query: 185 KEAIQDFTTMFTNCYVYNKPGEDVVLMAQNL 215
+ + D + N YN P AQ +
Sbjct: 196 ESFLDDVNLILANSVKYNGPESQYTKTAQEI 226
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSG 184
L I+++++ + P+ +PFH PV+A + DY+K+IT+PMDL T+++ + Y S
Sbjct: 15 LSSILESIINDMRDLPNTYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKRLYPSR 72
Query: 185 KEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQL 218
+E + + N YN P + ++Q++ L
Sbjct: 73 EEFREHLELIVKNSATYNGPKHSLTQISQSMLDL 106
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
+WPF+ PV+ K + DY+ +I PMDL T+RK + Y++ + F DDV LI +N KY
Sbjct: 48 SWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 105
Query: 453 NPPDHNVVTMARQLSAV 469
N P+ A+++ V
Sbjct: 106 NGPESQYTKTAQEIVNV 122
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 128 IVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEA 187
IV M AV P +WPFH PV+ +PDY+KVI PMDL TI+K + + Y S +
Sbjct: 37 IVTQKMMAV---PDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESF 91
Query: 188 IQDFTTMFTNCYVYNKPGEDVVLMAQNL 215
+ D + N YN P AQ +
Sbjct: 92 LDDVNLILANSVKYNGPESQYTKTAQEI 119
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 393 AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
+WPF+ PV+ K + DY+ +I P+DL T+RK + Y++ + F DDV LI +N KY
Sbjct: 45 SWPFHHPVN--KKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 102
Query: 453 NPPDHNVVTMARQL 466
N P+ A+++
Sbjct: 103 NGPESQYTKTAQEI 116
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 128 IVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEA 187
IV M AV P +WPFH PV+ +PDY+K+I P+DL TI+K + + Y S +
Sbjct: 34 IVTQKMMAV---PDSWPFHHPVN--KKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESF 88
Query: 188 IQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKIT 224
+ D + N YN P AQ + + IT
Sbjct: 89 LDDVNLILANSVKYNGPESQYTKTAQEIVNICYQTIT 125
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 396 FYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNP 454
F PVD+E++ +DY ++IK+PMDL TV K+ Y TAK+F D+ LI SN +YNP
Sbjct: 33 FSKPVDIEEV--SDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 89
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 124 QLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWS 183
+L+ +++V K + F +PVD ++ DY +VI +PMDL T+ +++ + Y +
Sbjct: 12 ELRLFLRDVTKRLATDKRFNIFSKPVDIEEVS--DYLEVIKEPMDLSTVITKIDKHNYLT 69
Query: 184 GKEAIQDFTTMFTNCYVYN---KPGEDVV 209
K+ ++D + +N YN PG+ ++
Sbjct: 70 AKDFLKDIDLICSNALEYNPDKDPGDKII 98
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 396 FYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPP 455
F PV ++++ DY D IK PMD T+RK++ + YK EF +D LI NC KYN
Sbjct: 34 FAQPVSLKEV--PDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNAR 91
Query: 456 D 456
D
Sbjct: 92 D 92
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSG 184
L ++++V+ + A F +PV +PDY I PMD T++KRLE Y +
Sbjct: 14 LTVLLRSVLDQLQDKDPARIFAQPVSL--KEVPDYLDHIKHPMDFATMRKRLEAQGYKNL 71
Query: 185 KEAIQDFTTMFTNCYVYN 202
E +DF + NC YN
Sbjct: 72 HEFEEDFDLIIDNCMKYN 89
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTY 432
WY +++I L K++ F VD +K DY+D+IK P ++ K++ Y
Sbjct: 22 WYLLANQLILSL--SKYEG-GHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQY 78
Query: 433 KTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRF 474
EF DV+LIF NC YN + V + + F ++
Sbjct: 79 AYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQL 120
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 123 NQLQYIVKN-VMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYY 181
N+ Y++ N ++ ++ K+ F + VDA N PDY+ VI P IK +L+ Y
Sbjct: 19 NKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQY 78
Query: 182 WSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLF 219
E ++D +F NC +YN V + +N+E F
Sbjct: 79 AYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYF 116
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 35/126 (27%)
Query: 372 LWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMR--- 428
L Y YC E+ E F PV + +Y+ IIKKPMDL TV+KK++
Sbjct: 90 LLYLYCHELSIE------------FQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKH 134
Query: 429 NRTYKTAKEFADDVRLIFSNCYKYNP-----------------PDHNVVTMARQLSAVFE 471
++ Y+ +F DVRLIF NC ++N D V + ++ FE
Sbjct: 135 SQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFE 194
Query: 472 DRFAKM 477
D+ ++
Sbjct: 195 DKLTEI 200
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLE---NNYYWSGK 185
+ ++ ++ H + F EPV A ++P+Y+K+I +PMDL T+KK+L+ + +Y
Sbjct: 86 CERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPD 142
Query: 186 EAIQDFTTMFTNCYVYNKPGEDVVLMAQNLE 216
+ + D +F NC +N+ + V + A E
Sbjct: 143 DFVADVRLIFKNCERFNEMMKVVQVYADTQE 173
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 380 IIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFA 439
+I+ELF K +P DY+ IIK+P+DL T+ ++++N +YK+ A
Sbjct: 31 LISELFQKLPSKVQYP-------------DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMA 77
Query: 440 DDVRLIFSNCYKYNPPDHNVVTMARQLSAVF 470
D+ L+ N YN P V A + +F
Sbjct: 78 KDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 108
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 154 LNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQ 213
+ PDY+ +I +P+DL TI +R++N Y S +D + N YN+PG V A
Sbjct: 43 VQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDAN 102
Query: 214 NLEQLFLTK 222
+++++F K
Sbjct: 103 SIKKIFYMK 111
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 407 LTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNP 454
++DY ++IK+PMDL TV K+ Y TAK+F D+ LI SN +YNP
Sbjct: 37 VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 119 GRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLEN 178
G +L+ +++V K + F +PV DY +VI +PMDL T+ +++
Sbjct: 7 GNTLRELRLFLRDVTKRLATDKRFNIFSKPVS-------DYLEVIKEPMDLSTVITKIDK 59
Query: 179 NYYWSGKEAIQDFTTMFTNCYVYN---KPGEDVV 209
+ Y + K+ ++D + +N YN PG+ ++
Sbjct: 60 HNYLTAKDFLKDIDLICSNALEYNPDKDPGDKII 93
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 380 IIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFA 439
+I+ELF K +P DY+ IIK+P+DL T+ ++++N +YK+ A
Sbjct: 30 LISELFQKLPSKVQYP-------------DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMA 76
Query: 440 DDVRLIFSNCYKYNPPDHNVVTMARQLSAVF 470
D+ L+ N YN P V A + +F
Sbjct: 77 KDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 107
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 154 LNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQ 213
+ PDY+ +I +P+DL TI +R++N Y S +D + N YN+PG V A
Sbjct: 42 VQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDAN 101
Query: 214 NLEQLFLTK 222
+++++F K
Sbjct: 102 SIKKIFYMK 110
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 380 IIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFA 439
+I+ELF K +P DY+ IIK+P+DL T+ ++++N +YK+ A
Sbjct: 28 LISELFQKLPSKVQYP-------------DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMA 74
Query: 440 DDVRLIFSNCYKYNPPDHNVVTMARQLSAVF 470
D+ L+ N YN P V A + +F
Sbjct: 75 KDIDLLAKNAKTYNEPGSQVFKDANSIKKIF 105
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 157 PDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLE 216
PDY+ +I +P+DL TI +R++N Y S +D + N YN+PG V A +++
Sbjct: 43 PDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIK 102
Query: 217 QLFLTK 222
++F K
Sbjct: 103 KIFYMK 108
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 155 NLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQN 214
+ PDY+K+I +PMDL I+ + N+ Y + I+D MF N YN+ G V A
Sbjct: 60 DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHI 119
Query: 215 LEQLFLTK 222
LE+L K
Sbjct: 120 LEKLLKEK 127
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 409 DYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSA 468
DY+ II +PMDL + +RN Y + +D++L+F N YN V A L
Sbjct: 63 DYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEK 122
Query: 469 VFEDR---FAKMPDESNL 483
+ +++ +PD+ ++
Sbjct: 123 LLKEKRKELGPLPDDDDM 140
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 396 FYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPP 455
F PV + ++ DY D IKKPMD T+++ + Y +F +D LI SNC KYN
Sbjct: 28 FSEPVPLSEV--PDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAK 85
Query: 456 D 456
D
Sbjct: 86 D 86
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 145 FHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202
F EPV + PDY I +PMD T+K+ LE Y + + +DF + +NC YN
Sbjct: 28 FSEPVPLSEV--PDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 125 LQYIVKNVMKAVW-KHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWS 183
LQ + +M+ + K P A+ F PV + P Y +I PMD T+K++++NN Y S
Sbjct: 9 LQEALNQLMRQLQRKDPSAF-FSFPVT--DFIAPGYSMIIKHPMDFSTMKEKIKNNDYQS 65
Query: 184 GKEAIQDFTTMFTNCYVYNKP 204
+E +F M TN +YNKP
Sbjct: 66 IEELKDNFKLMCTNAMIYNKP 86
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 410 YFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQL 466
Y IIK PMD T+++K++N Y++ +E D+ +L+ +N YN P+ A++L
Sbjct: 41 YSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKL 97
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 396 FYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNP 454
F PVD +++ DY +IK+PMDL +V K+ Y T K++ D+ LI SN +YNP
Sbjct: 31 FTKPVDPDEV--PDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 124 QLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWS 183
+L+ ++NV + F +PVD + PDY VI QPMDL ++ +++ + Y +
Sbjct: 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPDEV--PDYVTVIKQPMDLSSVISKIDLHKYLT 67
Query: 184 GKEAIQDFTTMFTNCYVYN---KPGEDVV 209
K+ ++D + +N YN PG+ ++
Sbjct: 68 VKDYLRDIDLICSNALEYNPDRDPGDRLI 96
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 125 LQYIVKNVMKAVW-KHPHAWPFHEPV-DAINLNLPDYHKVITQPMDLGTIKKRLENNYYW 182
+Q ++++ ++ + K PH + F PV DAI P Y +I PMD GT+K ++ N Y
Sbjct: 14 IQQLLEHFLRQLQRKDPHGF-FAFPVTDAIA---PGYSMIIKHPMDFGTMKDKIVANEYK 69
Query: 183 SGKEAIQDFTTMFTNCYVYNKP 204
S E DF M N YN+P
Sbjct: 70 SVTEFKADFKLMCDNAMTYNRP 91
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 410 YFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQL 466
Y IIK PMD GT++ K+ YK+ EF D +L+ N YN PD +A+++
Sbjct: 46 YSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKI 102
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 156 LPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKP 204
LPDY+ I +PMD+ I+ + N Y ++DF MF N YN+P
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEP 99
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 407 LTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQL 466
L DY+ IKKPMD+ +R M Y+ +D ++F+N YN P+ + A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 467 SAVF 470
V
Sbjct: 111 HKVL 114
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 409 DYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSA 468
DY+ IK P+ L +R K++N+ Y+T D+ L+F N +YN P+ + +L
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQ 114
Query: 469 VFE 471
V +
Sbjct: 115 VMQ 117
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 157 PDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLE 216
PDY++ I P+ L I+ +L+N Y + D MF N YN P + L+
Sbjct: 54 PDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQ 113
Query: 217 QLFLTK 222
Q+ K
Sbjct: 114 QVMQAK 119
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 156 LPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKP 204
LPDY+ I +PMD+ I+ + N Y ++DF MF N YN+P
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEP 99
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 407 LTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQL 466
L DY+ IKKPMD+ +R M Y+ +D ++F+N YN P+ + A L
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 467 SAVF 470
V
Sbjct: 111 HKVL 114
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 37/65 (56%)
Query: 407 LTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQL 466
L +Y+++I+KP+D +++++RN Y++ + DV L+ N +N + + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVL 108
Query: 467 SAVFE 471
+VF+
Sbjct: 109 QSVFK 113
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 156 LPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNL 215
LP+Y+++I +P+D IK+R+ N+ Y S + +D + N +N G + + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVL 108
Query: 216 EQLFLTKITGMPS 228
+ +F + PS
Sbjct: 109 QSVFKSARQSGPS 121
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 144 PFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203
PF E VD L P+Y++++ PM L +K+ LE Y + I D +F N +++N
Sbjct: 233 PFMELVDKDEL--PEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFND 290
Query: 204 PGEDVVLMAQNLEQLF 219
P + A L F
Sbjct: 291 PSALIYKDATTLTNYF 306
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 395 PFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNP 454
PF VD ++L +Y++I+ PM L V++ + Y +F D+ L+F N + +N
Sbjct: 233 PFMELVDKDEL--PEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFND 290
Query: 455 PDHNVVTMARQLSAVF 470
P + A L+ F
Sbjct: 291 PSALIYKDATTLTNYF 306
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 410 YFDIIKKPMDLGTVRKKMRNRTYKTA-KEFADDVRLIFSNCYKYNPPDHNVVTMARQLSA 468
Y+ I++PM + + K R+ Y+ F DV L+ NC YN D +V + Q+
Sbjct: 113 YYYKIQQPMSINEI--KSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVM 170
Query: 469 VFE 471
+ E
Sbjct: 171 LIE 173
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 144 PFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203
PF E VD L P+Y++++ PM L +K+ LE Y + I D +F N +++N
Sbjct: 218 PFMELVDKDEL--PEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFND 275
Query: 204 PGEDVVLMAQNLEQLF 219
P + A L F
Sbjct: 276 PSALIYKDATTLTNYF 291
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 395 PFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNP 454
PF VD ++L +Y++I+ PM L V++ + Y +F D+ L+F N + +N
Sbjct: 218 PFMELVDKDEL--PEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFND 275
Query: 455 PDHNVVTMARQLSAVF 470
P + A L+ F
Sbjct: 276 PSALIYKDATTLTNYF 291
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 410 YFDIIKKPMDLGTVRKKMRNRTYKTA-KEFADDVRLIFSNCYKYNPPDHNVVTMARQLSA 468
Y+ I++PM + + K R+ Y+ F DV L+ NC YN D +V + Q+
Sbjct: 98 YYYKIQQPMSINEI--KSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVM 155
Query: 469 VFE 471
+ E
Sbjct: 156 LIE 158
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 407 LTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQL 466
L +Y+++I+KP+D +++++RN Y++ + DV L+ N +N + + L
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
Query: 467 SAVF 470
+VF
Sbjct: 108 QSVF 111
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 156 LPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPG----EDVVLM 211
LP+Y+++I +P+D IK+R+ N+ Y S + +D + N +N G ED +++
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 407 LTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQL 466
L +Y+++I+KP+D +++++RN Y++ + DV L+ N +N + + L
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 108
Query: 467 SAVF 470
+VF
Sbjct: 109 QSVF 112
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 156 LPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPG----EDVVLM 211
LP+Y+++I +P+D IK+R+ N+ Y S + +D + N +N G ED +++
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 108
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 407 LTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQL 466
L +Y+++I+KP+D +++++RN Y++ + DV L+ N +N + + L
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 103
Query: 467 SAVF 470
+VF
Sbjct: 104 QSVF 107
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 156 LPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPG----EDVVLM 211
LP+Y+++I +P+D IK+R+ N+ Y S + +D + N +N G ED +++
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 103
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 155 NLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQN 214
N PDY++V++QP+DL I+++L+ Y DF +F N Y KP A
Sbjct: 40 NQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACK 99
Query: 215 LEQLFL 220
L L+L
Sbjct: 100 LWDLYL 105
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 409 DYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPD 456
DY++++ +P+DL +++K++ Y D +L+F+N Y PD
Sbjct: 43 DYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPD 90
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 144 PFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203
PF E VD L P+Y++++ P L +K+ LE Y + I D +F N +++N
Sbjct: 177 PFXELVDKDEL--PEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFND 234
Query: 204 PG 205
P
Sbjct: 235 PS 236
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 402 VEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVT 461
V+K L +Y++I+ P L V++ + Y +F D L+F N + +N P +
Sbjct: 182 VDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYK 241
Query: 462 MARQLSAVF 470
A L+ F
Sbjct: 242 DATTLTNYF 250
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 144 PFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203
PF E VD L P+Y++++ P L +K+ LE Y + I D +F N +++N
Sbjct: 183 PFXELVDKDEL--PEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFND 240
Query: 204 PG 205
P
Sbjct: 241 PS 242
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 402 VEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVT 461
V+K L +Y++I+ P L V++ + Y +F D L+F N + +N P +
Sbjct: 188 VDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYK 247
Query: 462 MARQLSAVF 470
A L+ F
Sbjct: 248 DATTLTNYF 256
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 409 DYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452
DY++ I P+DL T+ K++ YKT + F D+ +F N KY
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 154 LNLP------DYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201
LNLP DY++ I+ P+DL TI+K++ YY + + D +F N Y
Sbjct: 37 LNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 29/118 (24%)
Query: 573 PKSLNNVRKPQASNPQQAKKPKPNNANTVAAKKQVRTFDSEDEDVAKP------MSYDEK 626
P + R + KP + T + + RTFDS DE + KP + + E+
Sbjct: 59 PSIMKKRRGSSKGHDTHKGKPVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLTVEFLEE 118
Query: 627 RQLSLDINKLPGDKLGKVVHIIQSREPSLREPNPDEIEIDFETLKPSTLRELEQYVSS 684
S+ I L D LG + P+P T+R++E YV S
Sbjct: 119 NSFSVPILVLKKDGLGMTL------------PSP-----------SFTVRDVEHYVGS 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,024,517
Number of Sequences: 62578
Number of extensions: 699185
Number of successful extensions: 1260
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 171
length of query: 779
length of database: 14,973,337
effective HSP length: 106
effective length of query: 673
effective length of database: 8,340,069
effective search space: 5612866437
effective search space used: 5612866437
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)