Query psy14234
Match_columns 779
No_of_seqs 599 out of 2761
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:50:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474|consensus 100.0 2.2E-55 4.7E-60 514.1 26.4 528 134-727 2-584 (640)
2 KOG1474|consensus 100.0 5.3E-29 1.1E-33 292.2 15.9 112 120-231 218-329 (640)
3 cd05497 Bromo_Brdt_I_like Brom 100.0 8.1E-29 1.8E-33 227.1 12.5 107 120-226 1-107 (107)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 2.5E-26 5.4E-31 210.6 11.8 104 371-477 3-107 (107)
5 cd05495 Bromo_cbp_like Bromodo 99.9 5.9E-26 1.3E-30 208.6 11.4 105 371-477 2-106 (108)
6 cd05496 Bromo_WDR9_II Bromodom 99.9 5.6E-26 1.2E-30 211.6 10.9 106 371-481 4-110 (119)
7 cd05498 Bromo_Brdt_II_like Bro 99.9 4.8E-26 1E-30 207.6 10.2 102 373-474 1-102 (102)
8 cd05499 Bromo_BDF1_2_II Bromod 99.9 5.6E-26 1.2E-30 207.1 10.5 101 374-474 2-102 (102)
9 cd05495 Bromo_cbp_like Bromodo 99.9 1.4E-25 3E-30 206.2 12.3 104 123-226 2-106 (108)
10 cd05496 Bromo_WDR9_II Bromodom 99.9 2.1E-25 4.5E-30 207.8 11.4 106 122-229 3-109 (119)
11 cd05505 Bromo_WSTF_like Bromod 99.9 2.1E-25 4.6E-30 200.8 10.1 95 374-473 2-96 (97)
12 cd05508 Bromo_RACK7 Bromodomai 99.9 3.1E-25 6.7E-30 200.3 11.1 98 123-223 2-99 (99)
13 cd05504 Bromo_Acf1_like Bromod 99.9 4.4E-25 9.6E-30 205.0 11.8 107 367-478 7-113 (115)
14 cd05505 Bromo_WSTF_like Bromod 99.9 5.7E-25 1.2E-29 198.0 10.7 95 127-223 3-97 (97)
15 cd05510 Bromo_SPT7_like Bromod 99.9 1.3E-24 2.9E-29 200.5 11.8 108 368-479 3-111 (112)
16 cd05507 Bromo_brd8_like Bromod 99.9 1.5E-24 3.2E-29 198.2 11.9 101 123-225 2-102 (104)
17 cd05503 Bromo_BAZ2A_B_like Bro 99.9 8.1E-25 1.8E-29 197.5 10.0 96 374-474 2-97 (97)
18 cd05501 Bromo_SP100C_like Brom 99.9 1.2E-24 2.6E-29 196.2 10.7 98 372-477 2-99 (102)
19 cd05506 Bromo_plant1 Bromodoma 99.9 1.5E-24 3.3E-29 196.6 10.5 98 374-474 2-99 (99)
20 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.6E-24 5.6E-29 196.4 11.0 100 371-473 3-102 (103)
21 cd05502 Bromo_tif1_like Bromod 99.9 3.3E-24 7.1E-29 197.7 11.5 102 371-478 3-107 (109)
22 cd05510 Bromo_SPT7_like Bromod 99.9 3.7E-24 8.1E-29 197.5 11.8 105 122-228 5-111 (112)
23 cd05504 Bromo_Acf1_like Bromod 99.9 3.6E-24 7.8E-29 198.9 11.7 103 123-227 11-113 (115)
24 cd05507 Bromo_brd8_like Bromod 99.9 3.2E-24 6.9E-29 196.0 10.9 100 372-476 3-102 (104)
25 cd05516 Bromo_SNF2L2 Bromodoma 99.9 3.4E-24 7.4E-29 196.7 10.1 103 373-477 2-107 (107)
26 cd05500 Bromo_BDF1_2_I Bromodo 99.9 8.7E-24 1.9E-28 193.0 11.8 102 122-223 2-103 (103)
27 cd05502 Bromo_tif1_like Bromod 99.9 1E-23 2.2E-28 194.4 12.2 104 122-228 2-108 (109)
28 cd05503 Bromo_BAZ2A_B_like Bro 99.9 6.7E-24 1.5E-28 191.6 10.5 95 127-223 3-97 (97)
29 cd05528 Bromo_AAA Bromodomain; 99.9 1.2E-23 2.5E-28 194.4 11.9 103 123-227 2-108 (112)
30 cd05509 Bromo_gcn5_like Bromod 99.9 1.1E-23 2.4E-28 191.7 11.5 100 125-226 2-101 (101)
31 cd05506 Bromo_plant1 Bromodoma 99.9 9E-24 2E-28 191.6 10.6 98 126-223 2-99 (99)
32 cd05511 Bromo_TFIID Bromodomai 99.9 7.2E-24 1.6E-28 196.1 9.6 103 125-229 1-103 (112)
33 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.3E-23 2.8E-28 191.6 10.7 97 127-223 3-102 (102)
34 cd05498 Bromo_Brdt_II_like Bro 99.9 1.7E-23 3.8E-28 190.8 10.9 98 126-223 2-102 (102)
35 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.8E-23 4E-28 191.9 10.9 100 125-226 2-107 (107)
36 cd05509 Bromo_gcn5_like Bromod 99.9 2E-23 4.3E-28 190.0 11.0 100 373-477 2-101 (101)
37 cd05513 Bromo_brd7_like Bromod 99.9 1.9E-23 4E-28 188.4 10.5 95 125-221 2-96 (98)
38 cd05508 Bromo_RACK7 Bromodomai 99.9 2E-23 4.4E-28 188.4 9.5 94 374-473 5-98 (99)
39 cd05501 Bromo_SP100C_like Brom 99.9 5.3E-23 1.2E-27 185.6 11.2 95 128-227 6-100 (102)
40 cd05512 Bromo_brd1_like Bromod 99.9 4.4E-23 9.6E-28 186.2 10.6 93 125-219 2-94 (98)
41 cd05519 Bromo_SNF2 Bromodomain 99.9 3.3E-23 7.2E-28 189.1 9.4 99 374-474 2-103 (103)
42 cd05528 Bromo_AAA Bromodomain; 99.9 1E-22 2.2E-27 188.1 11.7 103 372-479 3-109 (112)
43 cd05524 Bromo_polybromo_I Brom 99.9 8.5E-23 1.8E-27 189.2 10.1 104 373-478 3-109 (113)
44 cd05513 Bromo_brd7_like Bromod 99.9 1.2E-22 2.5E-27 183.2 10.1 92 373-469 2-93 (98)
45 cd05520 Bromo_polybromo_III Br 99.9 1.1E-22 2.3E-27 185.4 10.0 92 380-473 11-102 (103)
46 cd05515 Bromo_polybromo_V Brom 99.9 1.7E-22 3.7E-27 185.0 10.9 100 374-475 2-104 (105)
47 cd05518 Bromo_polybromo_IV Bro 99.9 1.7E-22 3.8E-27 183.9 9.6 97 375-473 3-102 (103)
48 cd05515 Bromo_polybromo_V Brom 99.9 2.7E-22 5.9E-27 183.6 10.3 96 127-224 3-104 (105)
49 cd05517 Bromo_polybromo_II Bro 99.9 2.2E-22 4.7E-27 183.4 9.5 97 374-472 2-101 (103)
50 cd05512 Bromo_brd1_like Bromod 99.9 2.8E-22 6.2E-27 181.0 10.1 91 374-469 3-93 (98)
51 cd05529 Bromo_WDR9_I_like Brom 99.9 4.6E-22 9.9E-27 188.3 12.0 105 371-476 23-127 (128)
52 cd05511 Bromo_TFIID Bromodomai 99.9 2.6E-22 5.7E-27 185.7 10.0 100 377-481 5-104 (112)
53 COG5076 Transcription factor i 99.9 3E-22 6.5E-27 222.8 12.0 201 139-477 163-363 (371)
54 cd05519 Bromo_SNF2 Bromodomain 99.9 3.2E-22 6.9E-27 182.7 9.8 96 125-222 1-102 (103)
55 cd05525 Bromo_ASH1 Bromodomain 99.9 3.9E-22 8.5E-27 182.5 10.2 98 374-473 4-104 (106)
56 cd05525 Bromo_ASH1 Bromodomain 99.9 4.8E-22 1E-26 181.9 10.6 100 121-222 3-104 (106)
57 cd05517 Bromo_polybromo_II Bro 99.9 3.9E-22 8.6E-27 181.7 9.3 94 126-221 2-101 (103)
58 cd05529 Bromo_WDR9_I_like Brom 99.9 1.8E-21 3.9E-26 184.3 13.2 105 120-225 20-127 (128)
59 cd05520 Bromo_polybromo_III Br 99.9 8.2E-22 1.8E-26 179.6 9.9 96 125-222 5-102 (103)
60 KOG1472|consensus 99.9 1.9E-21 4.2E-26 223.8 15.3 101 373-478 607-707 (720)
61 smart00297 BROMO bromo domain. 99.9 1.8E-21 4E-26 178.5 11.7 103 121-225 4-106 (107)
62 cd05524 Bromo_polybromo_I Brom 99.9 1.2E-21 2.5E-26 181.6 10.2 102 126-229 4-111 (113)
63 cd05518 Bromo_polybromo_IV Bro 99.9 1.7E-21 3.6E-26 177.5 9.9 97 124-222 4-102 (103)
64 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.6E-21 5.6E-26 176.8 10.5 99 373-473 5-103 (104)
65 smart00297 BROMO bromo domain. 99.8 1.3E-20 2.7E-25 173.0 11.1 101 372-477 7-107 (107)
66 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.5E-20 3.2E-25 171.9 10.4 98 374-475 3-103 (106)
67 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.6E-20 3.5E-25 171.8 10.2 101 126-226 2-106 (109)
68 cd05522 Bromo_Rsc1_2_II Bromod 99.8 3E-20 6.5E-25 169.8 10.3 92 128-221 5-102 (104)
69 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 3.6E-20 7.7E-25 169.5 10.6 95 126-224 3-103 (106)
70 cd04369 Bromodomain Bromodomai 99.8 9.8E-20 2.1E-24 163.2 9.7 98 374-474 2-99 (99)
71 PF00439 Bromodomain: Bromodom 99.8 1E-19 2.2E-24 159.6 8.9 84 129-214 1-84 (84)
72 cd04369 Bromodomain Bromodomai 99.8 1.4E-19 3.1E-24 162.1 9.1 96 126-223 2-99 (99)
73 PF00439 Bromodomain: Bromodom 99.8 1.5E-19 3.2E-24 158.6 8.5 84 377-465 1-84 (84)
74 KOG0008|consensus 99.8 1E-18 2.3E-23 206.9 17.1 219 124-474 1261-1479(1563)
75 cd05492 Bromo_ZMYND11 Bromodom 99.8 6.3E-19 1.4E-23 161.4 9.9 85 393-477 19-106 (109)
76 cd05526 Bromo_polybromo_VI Bro 99.7 5.5E-18 1.2E-22 154.7 10.0 102 373-478 4-108 (110)
77 cd05526 Bromo_polybromo_VI Bro 99.7 8.5E-18 1.8E-22 153.4 9.2 99 124-226 3-107 (110)
78 COG5076 Transcription factor i 99.7 3.3E-17 7.2E-22 182.5 9.3 111 370-482 143-253 (371)
79 KOG1245|consensus 99.6 1.5E-16 3.3E-21 197.8 7.8 95 377-477 1306-1400(1404)
80 KOG1245|consensus 99.6 5.6E-16 1.2E-20 192.8 7.7 96 129-227 1306-1401(1404)
81 KOG1828|consensus 99.4 9.4E-14 2E-18 148.1 7.0 94 128-223 23-116 (418)
82 KOG1472|consensus 99.4 7.6E-14 1.6E-18 161.6 5.8 102 123-226 605-706 (720)
83 cd05494 Bromodomain_1 Bromodom 99.3 1.1E-12 2.3E-17 121.8 4.3 80 376-455 4-90 (114)
84 KOG0008|consensus 99.3 1.6E-12 3.5E-17 155.2 2.8 95 127-223 1385-1479(1563)
85 cd05494 Bromodomain_1 Bromodom 99.2 9.6E-12 2.1E-16 115.5 4.3 77 128-204 7-90 (114)
86 KOG1827|consensus 99.2 3.1E-11 6.8E-16 138.1 8.0 231 125-471 53-289 (629)
87 KOG1827|consensus 99.0 2.9E-10 6.4E-15 130.3 7.5 90 384-475 67-156 (629)
88 cd05491 Bromo_TBP7_like Bromod 99.0 4.1E-10 8.9E-15 103.4 3.8 42 416-457 63-104 (119)
89 cd05491 Bromo_TBP7_like Bromod 98.9 1.8E-09 3.9E-14 99.3 6.3 41 165-205 63-103 (119)
90 KOG0955|consensus 98.9 1.8E-09 4E-14 130.6 7.4 107 123-231 564-670 (1051)
91 KOG0955|consensus 98.9 3.3E-09 7.1E-14 128.4 7.7 106 372-482 565-670 (1051)
92 KOG0386|consensus 98.8 1.1E-08 2.3E-13 120.8 7.0 99 128-228 1028-1132(1157)
93 KOG0386|consensus 98.7 1.3E-08 2.8E-13 120.1 7.2 103 375-479 1027-1132(1157)
94 KOG1828|consensus 97.8 1.2E-05 2.7E-10 86.9 4.0 89 126-217 210-298 (418)
95 cd05493 Bromo_ALL-1 Bromodomai 95.4 0.02 4.3E-07 54.4 4.6 65 417-481 59-123 (131)
96 cd05493 Bromo_ALL-1 Bromodomai 95.4 0.024 5.1E-07 53.9 5.1 65 166-230 59-123 (131)
97 KOG0644|consensus 92.7 0.1 2.3E-06 62.0 4.1 61 163-223 1050-1110(1113)
98 KOG0644|consensus 91.5 0.13 2.8E-06 61.2 3.0 62 414-475 1050-1111(1113)
99 KOG3116|consensus 87.7 0.48 1E-05 45.5 3.1 6 716-721 75-80 (177)
100 PHA03308 transcriptional regul 83.2 0.82 1.8E-05 53.6 2.8 40 131-174 579-619 (1463)
101 KOG0732|consensus 83.0 0.59 1.3E-05 58.2 1.7 64 393-456 533-601 (1080)
102 PHA03308 transcriptional regul 79.4 1.7 3.7E-05 51.1 3.6 19 436-454 963-981 (1463)
103 KOG2140|consensus 78.6 1.2 2.7E-05 50.9 2.2 17 405-421 359-375 (739)
104 KOG0732|consensus 76.9 1.4 3E-05 55.0 2.1 64 142-205 533-601 (1080)
105 KOG2130|consensus 72.3 2.4 5.2E-05 45.8 2.2 20 430-449 156-175 (407)
106 KOG2140|consensus 60.3 5.5 0.00012 45.9 2.2 9 469-477 399-407 (739)
107 KOG2130|consensus 57.0 6.3 0.00014 42.7 1.9 22 633-654 265-289 (407)
108 PF14372 DUF4413: Domain of un 46.3 39 0.00085 30.7 5.1 50 429-478 3-52 (101)
109 TIGR02606 antidote_CC2985 puta 39.9 41 0.00088 28.5 3.8 28 170-197 12-39 (69)
110 COG4679 Phage-related protein 39.9 17 0.00037 33.9 1.6 81 632-714 19-114 (116)
111 KOG0577|consensus 38.7 2.2E+02 0.0047 34.3 10.4 39 639-691 229-267 (948)
112 TIGR02606 antidote_CC2985 puta 31.9 55 0.0012 27.7 3.4 28 421-448 12-39 (69)
113 PF03693 RHH_2: Uncharacterise 26.4 73 0.0016 27.8 3.3 26 171-196 16-41 (80)
114 PF14372 DUF4413: Domain of un 23.9 1.8E+02 0.0039 26.4 5.5 49 179-227 4-52 (101)
115 KOG1924|consensus 20.1 5.7E+02 0.012 31.7 9.7 14 624-637 1086-1099(1102)
No 1
>KOG1474|consensus
Probab=100.00 E-value=2.2e-55 Score=514.13 Aligned_cols=528 Identities=36% Similarity=0.499 Sum_probs=344.3
Q ss_pred HHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCHHHHHHH
Q psy14234 134 KAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQ 213 (779)
Q Consensus 134 ~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i~~~A~ 213 (779)
+.+++|.++|+|..||+.+.+.+|+||.+|.+|||++||+++|.+++|++..++++||..+|.||+.||..+.+|+.+++
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCC
Q psy14234 214 NLEQLFLTKITGMPSEEVVLDAPQPRSSKKKPPVSASPSLNPVIKTPVIPLNKLP-S-ATSTPKPRPPNPVLGSTATTTT 291 (779)
Q Consensus 214 ~Le~~f~~~~~~~~~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~p~~~~~~~~~~~~~~~~~ 291 (779)
.++.+|.+++..++.++.+.....++........... ..+..+.... . ...++..... +...+...++
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~ 151 (640)
T KOG1474|consen 82 SLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSS--------SQVRKLSERLKQELQQVRPLTKA--VEFSPEPSVV 151 (640)
T ss_pred cchhhcccccccccccccCCcccccccccCcCCCCch--------hhhhhhhhccccccccCCccccc--cccccccccc
Confidence 9999999999999998877655544443222111100 0000000000 0 0000000000 0000000000
Q ss_pred CccccccCCCCCCCChhHHHhhhhccCCCCCCCCCCCC--CCCcchhh-----h-cccccccCCCCCCCCCCCcCCCCCC
Q psy14234 292 APKVNHLNSMNAPDTPDMKKAIKRKADGSIDHTPSSLH--PTPVKSAK-----Q-LNTRRESGSITKKPQRISEEGGGGS 363 (779)
Q Consensus 292 ~~~s~~~~~~~~p~~~~~kk~~krkadtt~d~tPt~~~--~~~~~~~~-----~-~~~rres~R~~k~p~~~l~~~~~~~ 363 (779)
.. ......+.....++++.+|+. ++.... ......+. . ...+++++ ... .. ...
T Consensus 152 ~~------~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~-~~~ 213 (640)
T KOG1474|consen 152 SP------VSPASQPFKSKNGVKKVADTC---VKSYKSKSEREPSPGQKREGTVAPNSSRESG------DSA--AE-EEA 213 (640)
T ss_pred CC------CCCcccccccccchhhhhccc---cccccccCcCCCCccccccccccCccccccc------ccc--cc-ccc
Confidence 00 000011222233444555544 222000 00000000 0 00000100 000 00 011
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Q psy14234 364 GLGGSKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVR 443 (779)
Q Consensus 364 ~~~~~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~ 443 (779)
....+.+..++++|..||+.|+.++| +|||+.|||++.|||||||+||+|||||+||++||.+|.|.++.+|++|||
T Consensus 214 ~~~~~~~~~~lk~C~~iLk~l~~~k~---awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVR 290 (640)
T KOG1474|consen 214 KPKSKLTVELLKQCLSILKRLMKHKH---AWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVR 290 (640)
T ss_pred cccccccHHHHHHHHHHHHHHHhccC---CCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHH
Confidence 11227788999999999999999987 699999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCchhhhhhhc-----------------------c--------CCC
Q psy14234 444 LIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDESNLASRAA-----------------------A--------SVS 492 (779)
Q Consensus 444 Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~~~~~~~~-----------------------s--------~~~ 492 (779)
|||.|||+||++|++||.||..|+.+|+.+|+.++.+........ + +..
T Consensus 291 L~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (640)
T KOG1474|consen 291 LTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPS 370 (640)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcc
Confidence 999999999999999999999999999999999876554322110 0 001
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhcccCCCCCCCCCCCCc---cccchhccccccCCCCCCCCC
Q psy14234 493 SDDDSEDERQNQLKYLQEQLKSLTDQIRLLVEDSTKPKKKKKKNRDQPKSKMPMGQ---NSAMMNDHVNKMNKAPAPLNN 569 (779)
Q Consensus 493 ~~~d~eee~~~~l~~lq~ql~~~~~~l~~l~~~~~~k~kkk~~~~~~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 569 (779)
.....++++...++.|+..+..++.+|..+.+.+..++....+.+........... ..+......
T Consensus 371 ~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~------------ 438 (640)
T KOG1474|consen 371 SELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKA------------ 438 (640)
T ss_pred cccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccc------------
Confidence 22345666788889999999999999999988887776555433222111110000 000000000
Q ss_pred CCCCCCcCCCCCC-CCCCccccC--CCCCCCCcchhhccccccCCCcccccCCCCCHHHHHHHHHHccCCCCcchHHHHH
Q psy14234 570 GQKPKSLNNVRKP-QASNPQQAK--KPKPNNANTVAAKKQVRTFDSEDEDVAKPMSYDEKRQLSLDINKLPGDKLGKVVH 646 (779)
Q Consensus 570 ~~~~k~~~~~~~~-~~~~~~~~~--~~k~~~~~~~~~~~~~~~~~s~~e~~~~pmt~dEK~qLs~~In~LpgekL~~Vv~ 646 (779)
....+....... ........+ .|.+.. +.. ...+| +++++.+.+|.+..+...++|+
T Consensus 439 -~~~~~r~~t~~~~~~l~~~~~~~~~p~~l~--------------~~~-~~~~~----~~~~~~l~~~~~~~~~~~~~vd 498 (640)
T KOG1474|consen 439 -ANENKRDMTAPEKAKLKELLQNLLPPNKLE--------------SIV-EILKP----EKRQLDLSQNDDEIELDLDSVD 498 (640)
T ss_pred -cccccccccccccccchhhccCCCCCcccc--------------Ccc-cccch----hhhcccccccccchhhcccccc
Confidence 000000000000 000000000 000000 000 01133 8899999999999999999999
Q ss_pred HHhhcCCCCCCCCCCcEEEeCCCCChHHHHHHHHHHHHHHhhhcCCC--------CCCChhHHHHHHHHHHHHHHhhhhc
Q psy14234 647 IIQSREPSLREPNPDEIEIDFETLKPSTLRELEQYVSSCLRKRTYKK--------TPKPKDEKFAEKKHELEKRLQDVTS 718 (779)
Q Consensus 647 IIq~~ep~l~~~n~dEIEiD~etL~~~TLreLe~yV~~cL~kk~~k~--------~~ks~~~~~~~k~~ele~~l~~~~g 718 (779)
|++.++|+ .+++++|++++++...|.+++..++..|++...+.. .....++...++..++..+......
T Consensus 499 ~~~~~~~~---~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 575 (640)
T KOG1474|consen 499 GSQSREPS---SNPLEIETIRETLKLSTERELELSKASSSRSLMRNRSGSLPERLSRSISEEKLREKSEKSSSEASSSSS 575 (640)
T ss_pred cccccCCC---cccchhhhhhccccchhhHHHHHHHHhhhhhhccCcccccccchhhhhhHHhhhhhhHhhhhhhhhhhH
Confidence 99999998 678999999999999999999999999999887752 2233355567777777778888888
Q ss_pred CCCcccccC
Q psy14234 719 QIDSTNKKL 727 (779)
Q Consensus 719 ~~~~~~~~~ 727 (779)
+++...+..
T Consensus 576 ~~~~~~~~~ 584 (640)
T KOG1474|consen 576 EDGENKAAS 584 (640)
T ss_pred HHHhhcccc
Confidence 777655544
No 2
>KOG1474|consensus
Probab=99.96 E-value=5.3e-29 Score=292.19 Aligned_cols=112 Identities=46% Similarity=0.774 Sum_probs=104.8
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
+.+.++...|..||..||+|+++|||..|||++.|++||||+||++||||+||++||.++.|+++.+|..||+|||.||+
T Consensus 218 ~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 218 KLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCM 297 (640)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Confidence 34445555688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCCCccc
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLTKITGMPSEEV 231 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e~ 231 (779)
+||.+|++||.||..|+.+|..+|+.|+....
T Consensus 298 ~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 298 TYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999887644
No 3
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=8.1e-29 Score=227.07 Aligned_cols=107 Identities=75% Similarity=1.322 Sum_probs=104.4
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
|.|+|++++++.||+.|++|+.+|||..|||+.+.++||||++|++||||+||++||+++.|.++.+|+.||+|||.||+
T Consensus 1 ~~~~q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05497 1 RHTNQLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCY 80 (107)
T ss_pred CccHHHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLTKITGM 226 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~~~~~~ 226 (779)
+||+++|.|+.+|..|++.|+++|.+|
T Consensus 81 ~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 81 IYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999876
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.5e-26 Score=210.63 Aligned_cols=104 Identities=43% Similarity=0.816 Sum_probs=96.4
Q ss_pred HHHHHHH-HHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 371 PLWYKYC-SEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 371 ~~~~k~c-~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
+.++++| ..||..|+.+. .+|||..|||+...++||||+||++||||+||++||++|.|.++.+|.+||+|||.||
T Consensus 3 ~~q~~~~~~~il~~l~~~~---~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05497 3 TNQLQYLLKVVLKALWKHK---FAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNC 79 (107)
T ss_pred cHHHHHHHHHHHHHHHhCC---cCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4567777 47788888764 6999999999998889999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 450 YKYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 450 ~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
+.||+++|.|+.+|..|+++|++++++|
T Consensus 80 ~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 80 YIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999865
No 5
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.9e-26 Score=208.63 Aligned_cols=105 Identities=33% Similarity=0.625 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
.++.+.|..||..|+++. ..+|||..|||+...++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 2 ~~l~~~~~~il~~l~~~~--~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~ 79 (108)
T cd05495 2 EELRQALMPTLEKLYKQD--PESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAW 79 (108)
T ss_pred HHHHHHHHHHHHHHHHcC--cccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999873 259999999999988899999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
.||+++|.|+.+|..|+++|++.+..+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 80 LYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 6
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.6e-26 Score=211.57 Aligned_cols=106 Identities=41% Similarity=0.693 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
..|.+.|..||..|+.+. .+|||+.|||+.. +||||+||++||||+||++||.+|.|.++.+|.+||+|||.||+
T Consensus 4 ~~w~~~c~~il~~l~~~~---~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~ 78 (119)
T cd05496 4 SDWKKQCKELVNLMWDCE---DSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSK 78 (119)
T ss_pred HHHHHHHHHHHHHHHhCC---ccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999875 5899999999875 89999999999999999999999999999999999999999999
Q ss_pred ccCCC-CChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 451 KYNPP-DHNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 451 ~yN~~-~s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
+||++ ++.||.+|..|+.+|+++|.+|....
T Consensus 79 ~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 79 SYTPNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 99999999999999999999986544
No 7
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.8e-26 Score=207.56 Aligned_cols=102 Identities=68% Similarity=1.201 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhccc
Q psy14234 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~y 452 (779)
++++|..||..|+++++..++|||+.||++...++|+||++|++||||++|++||++|.|.++++|..||+|||.||+.|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 80 (102)
T cd05498 1 QLKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKY 80 (102)
T ss_pred ChhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988789999999999988789999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHH
Q psy14234 453 NPPDHNVVTMARQLSAVFEDRF 474 (779)
Q Consensus 453 N~~~s~v~~~A~~Lq~~Fe~~~ 474 (779)
|+++|.++.+|..|++.|+++|
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987
No 8
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=5.6e-26 Score=207.12 Aligned_cols=101 Identities=52% Similarity=1.031 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy14234 374 YKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYN 453 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN 453 (779)
+++|..||..|++.+++.++|||+.|||+...++||||++|++||||++|++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999998877899999999999977799999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q psy14234 454 PPDHNVVTMARQLSAVFEDRF 474 (779)
Q Consensus 454 ~~~s~v~~~A~~Lq~~Fe~~~ 474 (779)
+++|.++.+|..|+++|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999886
No 9
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.4e-25 Score=206.18 Aligned_cols=104 Identities=29% Similarity=0.602 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 123 NQLQYIVKNVMKAVWKH-PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~-~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
.+|+..|..|++.|+++ +.+|||..||++...++||||++|++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999 99999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCC
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTKITGM 226 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~~~~~ 226 (779)
|+++|.|+.+|..|++.|++++..+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753
No 10
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.1e-25 Score=207.77 Aligned_cols=106 Identities=29% Similarity=0.517 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
...|+..|..||+.|++|+.+|||+.||++. .+||||.+|++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~y 80 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSY 80 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHhCCCCc
Q psy14234 202 NKP-GEDVVLMAQNLEQLFLTKITGMPSE 229 (779)
Q Consensus 202 N~~-~s~i~~~A~~Le~~f~~~~~~~~~~ 229 (779)
|++ ++.||.+|..|+++|.+++..|...
T Consensus 81 N~~~~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 81 TPNKRSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 9999999999999999999987543
No 11
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.1e-25 Score=200.81 Aligned_cols=95 Identities=32% Similarity=0.654 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy14234 374 YKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYN 453 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN 453 (779)
++.|.+||..|+.++ .+|||+.|||... +||||+||++||||+||++||++|.|.++++|.+||+|||.||++||
T Consensus 2 ~~~c~~il~~l~~~~---~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05505 2 LQKCEEILSKILKYR---FSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYY 76 (97)
T ss_pred HHHHHHHHHHHHhCC---CcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999875 5899999999765 89999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q psy14234 454 PPDHNVVTMARQLSAVFEDR 473 (779)
Q Consensus 454 ~~~s~v~~~A~~Lq~~Fe~~ 473 (779)
++++.|+.+|..|+++|..+
T Consensus 77 ~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 77 ENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 12
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.1e-25 Score=200.28 Aligned_cols=98 Identities=27% Similarity=0.463 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
+||+.+|..+++.|+ |+.+|||..||++. ++||||.+|++||||+||++||++|.|.++++|..||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 689999999999999 99999999999975 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~ 223 (779)
+++|.++.+|..|.+.|...|
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhhC
Confidence 999999999999999997653
No 13
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.4e-25 Score=205.00 Aligned_cols=107 Identities=39% Similarity=0.751 Sum_probs=100.6
Q ss_pred CCCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q psy14234 367 GSKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446 (779)
Q Consensus 367 ~~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf 446 (779)
+.++..++..|..||..|+.+. .+|+|+.|||... +||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 7 ~~~~~~~~~~c~~il~~l~~~~---~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~ 81 (115)
T cd05504 7 RHHGPLNLSALEQLLVEIVKHK---DSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVF 81 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHhCC---CchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999865 5899999999764 8999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 447 SNCYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 447 ~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
.||+.||+++|.++.+|..|+++|++++.++.
T Consensus 82 ~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 82 SNCFLYNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999874
No 14
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.7e-25 Score=198.03 Aligned_cols=95 Identities=32% Similarity=0.512 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCC
Q psy14234 127 YIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGE 206 (779)
Q Consensus 127 ~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s 206 (779)
..|..||+.|++|+.+|||..||+.. ++||||++|++||||+||++||+.|.|.++.+|..||.|||.||++||+++|
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGS 80 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46889999999999999999999965 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14234 207 DVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 207 ~i~~~A~~Le~~f~~~~ 223 (779)
.|+.+|..|++.|.+++
T Consensus 81 ~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 81 YVLSCMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998763
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=200.49 Aligned_cols=108 Identities=36% Similarity=0.582 Sum_probs=99.4
Q ss_pred CCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q psy14234 368 SKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447 (779)
Q Consensus 368 ~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~ 447 (779)
++.+++...|..||.+|+.+. ..+|||+.||++.. +||||++|++||||+||++||++|.|.++++|.+||+|||.
T Consensus 3 ~~~~~~~~~~~~il~~l~~~~--~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~ 78 (112)
T cd05510 3 IGQEEFYESLDKVLNELKTYT--EHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWK 78 (112)
T ss_pred ccHHHHHHHHHHHHHHHHhcC--ccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999873 24899999999875 89999999999999999999999999999999999999999
Q ss_pred hhcccCCCCC-hHHHHHHHHHHHHHHHHhcCCC
Q psy14234 448 NCYKYNPPDH-NVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 448 Na~~yN~~~s-~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
||+.||++++ .++.+|..|++.|+.++..||+
T Consensus 79 N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~~~ 111 (112)
T cd05510 79 NCLLYNSDPSHPLRRHANFMKKKAEHLLKLIPD 111 (112)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999865 6789999999999999999986
No 16
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.5e-24 Score=198.24 Aligned_cols=101 Identities=34% Similarity=0.466 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
..|+..|..|++.|+.|+.++||..||+.. .+||||.+|++||||+||++||++|.|.++.+|..||+|||+||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 358889999999999999999999999974 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKITG 225 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~~~ 225 (779)
++++.|+.+|..|++.|.+.+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998875
No 17
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=8.1e-25 Score=197.52 Aligned_cols=96 Identities=41% Similarity=0.782 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy14234 374 YKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYN 453 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN 453 (779)
+.+|..||.+|+.+. .+++|+.||+... +|+||++|++||||+||++||++|.|.++++|.+||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~---~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05503 2 LALCETILDEMEAHE---DAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFN 76 (97)
T ss_pred HHHHHHHHHHHHcCC---CchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999874 5899999999875 89999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q psy14234 454 PPDHNVVTMARQLSAVFEDRF 474 (779)
Q Consensus 454 ~~~s~v~~~A~~Lq~~Fe~~~ 474 (779)
++++.++.+|..|+++|+.+|
T Consensus 77 ~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 77 EDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 18
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.2e-24 Score=196.19 Aligned_cols=98 Identities=26% Similarity=0.406 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcc
Q psy14234 372 LWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYK 451 (779)
Q Consensus 372 ~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~ 451 (779)
..++.|..||.+|+++.. +++|..++ . ++||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 2 ~~l~~ce~il~~l~~~~~---s~~f~~~p--~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~ 74 (102)
T cd05501 2 EELLKCEFLLLKVYCMSK---SGFFISKP--Y--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKL 74 (102)
T ss_pred HHHHHHHHHHHHHHhCcc---cccccCCC--C--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999875 67886532 2 5899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 452 YNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 452 yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
||+++ .++.+|..|++.|+++|.++
T Consensus 75 yN~~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 75 FYKDD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred HcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999865
No 19
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.5e-24 Score=196.61 Aligned_cols=98 Identities=53% Similarity=0.990 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy14234 374 YKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYN 453 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN 453 (779)
++.|..||..|++++ .+|+|..||++...++|+||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~---~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn 78 (99)
T cd05506 2 MKQCGTLLRKLMKHK---WGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYN 78 (99)
T ss_pred HHHHHHHHHHHHhCC---CCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999875 58999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q psy14234 454 PPDHNVVTMARQLSAVFEDRF 474 (779)
Q Consensus 454 ~~~s~v~~~A~~Lq~~Fe~~~ 474 (779)
+++|.++.+|..|++.|+++|
T Consensus 79 ~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 79 PPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 20
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.6e-24 Score=196.43 Aligned_cols=100 Identities=40% Similarity=0.677 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
..+.++|.+||..|+.+. .+|||..|||+...++|+||++|++||||+||++||.+|.|.++.+|..||+|||.||+
T Consensus 3 ~~~~~~~~~ii~~l~~~~---~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLK---DARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCL 79 (103)
T ss_pred HHHHHHHHHHHHHHHcCC---CChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 468899999999998765 58999999999888899999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHH
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDR 473 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~ 473 (779)
.||+++|.++.+|..|++.|++.
T Consensus 80 ~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 80 TFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999975
No 21
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.3e-24 Score=197.73 Aligned_cols=102 Identities=36% Similarity=0.783 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHhhh
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRN---RTYKTAKEFADDVRLIFS 447 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~---~~Y~s~~eF~~Dv~Lmf~ 447 (779)
+.++++|..||.+|+++ ..+|||+.||++ .+|+||++|++||||+||++||++ |.|.++++|.+||+|||.
T Consensus 3 ~~~~~~c~~il~~l~~~---~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~ 76 (109)
T cd05502 3 PIDQRKCERLLLELYCH---ELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFK 76 (109)
T ss_pred HHHHHHHHHHHHHHHhC---CCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 56899999999999987 469999999998 389999999999999999999998 699999999999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 448 Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
||+.||+++|.++.+|..|+++|+++|.++.
T Consensus 77 Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 77 NCYKFNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999998864
No 22
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.7e-24 Score=197.54 Aligned_cols=105 Identities=27% Similarity=0.438 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHcC-CCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKH-PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~-~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~ 200 (779)
..+|...|..||+.|++| +.+++|+.||++. ++||||.+|++||||+||++||+++.|.++.+|..||+|||+||+.
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 457888999999999999 8999999999976 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCC-HHHHHHHHHHHHHHHHHhCCCC
Q psy14234 201 YNKPGE-DVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 201 yN~~~s-~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
||++++ .++.+|..|++.|...+..||.
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~~~ 111 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLIPD 111 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999876 6789999999999999998863
No 23
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.6e-24 Score=198.90 Aligned_cols=103 Identities=31% Similarity=0.635 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
......|..||+.|++++.+|+|..||+.. ++||||++|++||||+||++||++|.|.++.+|+.||+|||.||++||
T Consensus 11 ~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344567899999999999999999999965 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
+++|.|+.+|..|+++|.++++++.
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999864
No 24
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.2e-24 Score=196.00 Aligned_cols=100 Identities=31% Similarity=0.529 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcc
Q psy14234 372 LWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYK 451 (779)
Q Consensus 372 ~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~ 451 (779)
.|.+.|..||..|+.++ .+|||..||+.. ++|+||++|++||||+||++||++|.|.++.+|.+||+|||.||+.
T Consensus 3 ~~~~~~~~il~~l~~~~---~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 77 (104)
T cd05507 3 AWKKAILLVYRTLASHR---YASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIM 77 (104)
T ss_pred HHHHHHHHHHHHHHcCC---CCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 48899999999998875 589999999985 4899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhc
Q psy14234 452 YNPPDHNVVTMARQLSAVFEDRFAK 476 (779)
Q Consensus 452 yN~~~s~v~~~A~~Lq~~Fe~~~~~ 476 (779)
||++++.|+.+|..|+..|..++..
T Consensus 78 yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 78 YNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988765
No 25
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=3.4e-24 Score=196.74 Aligned_cols=103 Identities=22% Similarity=0.432 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhccC---CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 373 WYKYCSEIIAELFHKKH---QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
+.+.|..||..|+.+++ +.++|||+.+|+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 45778889998888764 457999999998764 8999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 450 YKYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 450 ~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
+.||++||.||.+|..|+++|++.+.++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998864
No 26
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=8.7e-24 Score=192.96 Aligned_cols=102 Identities=34% Similarity=0.627 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
+......|..||+.|++++.+++|..||++.+.++||||.+|++||||++|++||.++.|.++.+|..||++||+||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~~ 223 (779)
|+++|.++.+|..|++.|++.+
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998753
No 27
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1e-23 Score=194.44 Aligned_cols=104 Identities=32% Similarity=0.591 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhc---CCCCCHHHHHHHHHHHhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLEN---NYYWSGKEAIQDFTTMFTNC 198 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~---~~Y~s~~ef~~D~~lmf~Na 198 (779)
+...+..|..||..|++|+.++||..||++ .+|+||.+|++||||+||++||+. |.|.++.+|..||+|||+||
T Consensus 2 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na 78 (109)
T cd05502 2 SPIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNC 78 (109)
T ss_pred CHHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999996 599999999999999999999998 69999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14234 199 YVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 199 ~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
+.||+++|.|+.+|..|++.|+++|.++.+
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 79 YKFNEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999998754
No 28
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=6.7e-24 Score=191.56 Aligned_cols=95 Identities=31% Similarity=0.627 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCC
Q psy14234 127 YIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGE 206 (779)
Q Consensus 127 ~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s 206 (779)
..|..||+.|++|+.+++|+.||++. .+|+||.+|++||||+||++||++|.|.++.+|..||+|||.||+.||++++
T Consensus 3 ~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05503 3 ALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDS 80 (97)
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 36889999999999999999999976 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14234 207 DVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 207 ~i~~~A~~Le~~f~~~~ 223 (779)
.|+.+|..|++.|+.+|
T Consensus 81 ~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 81 EVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999875
No 29
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.90 E-value=1.2e-23 Score=194.38 Aligned_cols=103 Identities=28% Similarity=0.448 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
.||+.+|..|++.|+.|+.+++|..||+.. .+||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 478999999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHHHhCCC
Q psy14234 203 KPG----EDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 203 ~~~----s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
+++ +.|+.+|..|++.|.+++.++.
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhcC
Confidence 994 6999999999999999999864
No 30
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.1e-23 Score=191.65 Aligned_cols=100 Identities=40% Similarity=0.743 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCC
Q psy14234 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKP 204 (779)
Q Consensus 125 l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~ 204 (779)
++..|..|++.|.+|+.+++|..||++. .+|+||.+|++||||.||++||+++.|.++.+|+.||+|||+||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678899999999999999999999976 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC
Q psy14234 205 GEDVVLMAQNLEQLFLTKITGM 226 (779)
Q Consensus 205 ~s~i~~~A~~Le~~f~~~~~~~ 226 (779)
++.++.+|..|++.|+++|+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999864
No 31
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9e-24 Score=191.58 Aligned_cols=98 Identities=41% Similarity=0.705 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCC
Q psy14234 126 QYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPG 205 (779)
Q Consensus 126 ~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~ 205 (779)
+..|..||+.|++++.+++|..||++...++|+||.+|++||||.||++||+++.|.++.+|..||++||.||++||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56799999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14234 206 EDVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 206 s~i~~~A~~Le~~f~~~~ 223 (779)
|.++.+|..|++.|+++|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999875
No 32
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.2e-24 Score=196.09 Aligned_cols=103 Identities=30% Similarity=0.597 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCC
Q psy14234 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKP 204 (779)
Q Consensus 125 l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~ 204 (779)
|++++..|+..|++|+.+++|..||++. .+|+||.+|++||||+||++||+++.|.++.+|..||+|||+||++||++
T Consensus 1 ~~~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 78 (112)
T cd05511 1 LSFILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGP 78 (112)
T ss_pred CHHHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4688999999999999999999999976 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCc
Q psy14234 205 GEDVVLMAQNLEQLFLTKITGMPSE 229 (779)
Q Consensus 205 ~s~i~~~A~~Le~~f~~~~~~~~~~ 229 (779)
++.++.+|..|++.|.+.+.+++.+
T Consensus 79 ~s~i~~~A~~l~~~~~~~~~~~~~~ 103 (112)
T cd05511 79 DSVYTKKAKEMLELAEELLAEREEK 103 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999998654
No 33
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.3e-23 Score=191.56 Aligned_cols=97 Identities=43% Similarity=0.823 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHc---CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCC
Q psy14234 127 YIVKNVMKAVWK---HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203 (779)
Q Consensus 127 ~~~~~il~~L~~---~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~ 203 (779)
..|..||+.|++ +..++||+.||++...++||||.+|++||||++|++||+++.|.++.+|..||+|||.||+.||+
T Consensus 3 ~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~ 82 (102)
T cd05499 3 KFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNP 82 (102)
T ss_pred HHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 468889999998 46799999999988778999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14234 204 PGEDVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 204 ~~s~i~~~A~~Le~~f~~~~ 223 (779)
++|.++.+|..|++.|+++|
T Consensus 83 ~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 83 EGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 34
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.7e-23 Score=190.75 Aligned_cols=98 Identities=41% Similarity=0.746 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 126 QYIVKNVMKAVWKH---PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 126 ~~~~~~il~~L~~~---~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
+..|..||+.|+.+ +.++||..||++...++||||.+|++||||++|++||++|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35688999999999 889999999998877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~ 223 (779)
+++|.|+.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 35
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.8e-23 Score=191.88 Aligned_cols=100 Identities=23% Similarity=0.329 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhh
Q psy14234 125 LQYIVKNVMKAVWKHPH------AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNC 198 (779)
Q Consensus 125 l~~~~~~il~~L~~~~~------s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na 198 (779)
|+..|..||+.|.++.+ ++||..||+.. ++||||.+|++||||+||++||++|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 55667778888887766 89999999865 89999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy14234 199 YVYNKPGEDVVLMAQNLEQLFLTKITGM 226 (779)
Q Consensus 199 ~~yN~~~s~i~~~A~~Le~~f~~~~~~~ 226 (779)
++||+++|.||.+|..|+++|.+.+..+
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998764
No 36
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=2e-23 Score=190.01 Aligned_cols=100 Identities=41% Similarity=0.760 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhccc
Q psy14234 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~y 452 (779)
...+|..||..|+.++ .+|+|..||++.. +|+||++|++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 2 ~~~~~~~il~~l~~~~---~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 76 (101)
T cd05509 2 LYTQLKKVLDSLKNHK---SAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLY 76 (101)
T ss_pred hHHHHHHHHHHHHhCC---CchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678999999998875 5899999999886 8999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 453 NPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 453 N~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
|++++.++.+|..|+++|+++++++
T Consensus 77 N~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 77 NGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998764
No 37
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.9e-23 Score=188.37 Aligned_cols=95 Identities=29% Similarity=0.411 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCC
Q psy14234 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKP 204 (779)
Q Consensus 125 l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~ 204 (779)
|+.+|..||+.|++++.+++|..||+.. .+||||++|++||||+||++||+++.|.++.+|+.||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 6788999999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy14234 205 GEDVVLMAQNLEQLFLT 221 (779)
Q Consensus 205 ~s~i~~~A~~Le~~f~~ 221 (779)
++.+|.+|..|...-..
T Consensus 80 ~s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 80 DTIYYKAAKKLLHSGMK 96 (98)
T ss_pred CCHHHHHHHHHHHhhhh
Confidence 99999999999776543
No 38
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2e-23 Score=188.44 Aligned_cols=94 Identities=31% Similarity=0.529 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy14234 374 YKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYN 453 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN 453 (779)
...+..+|..|. + ..+|||..||++.. +||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||
T Consensus 5 ~~~L~~~~~~~~-~---~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 5 SKLLKFALERMK-Q---PGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred HHHHHHHHHHHh-C---cCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344455555554 3 46999999999864 89999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q psy14234 454 PPDHNVVTMARQLSAVFEDR 473 (779)
Q Consensus 454 ~~~s~v~~~A~~Lq~~Fe~~ 473 (779)
+++|.++.+|..|.++|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999864
No 39
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=5.3e-23 Score=185.57 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCH
Q psy14234 128 IVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGED 207 (779)
Q Consensus 128 ~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~ 207 (779)
.|..||..|+.++.+++|..++ . ++||||.+|++||||+||++||.+|.|.++.+|++||+|||.||++||+++ .
T Consensus 6 ~ce~il~~l~~~~~s~~f~~~p--~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~ 80 (102)
T cd05501 6 KCEFLLLKVYCMSKSGFFISKP--Y--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-D 80 (102)
T ss_pred HHHHHHHHHHhCcccccccCCC--C--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-H
Confidence 4999999999999999997633 2 799999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q psy14234 208 VVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 208 i~~~A~~Le~~f~~~~~~~~ 227 (779)
++.+|..|++.|+++|.++.
T Consensus 81 ~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 81 FGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998753
No 40
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.4e-23 Score=186.23 Aligned_cols=93 Identities=30% Similarity=0.486 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCC
Q psy14234 125 LQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKP 204 (779)
Q Consensus 125 l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~ 204 (779)
|..+|..||+.|+.|+.+++|..||+.. ++||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678899999999999999999999975 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy14234 205 GEDVVLMAQNLEQLF 219 (779)
Q Consensus 205 ~s~i~~~A~~Le~~f 219 (779)
++.+|.+|..|++.-
T Consensus 80 ~s~~~~~A~~l~~~~ 94 (98)
T cd05512 80 DTIFYRAAVRLRDQG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998753
No 41
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.3e-23 Score=189.14 Aligned_cols=99 Identities=24% Similarity=0.466 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 374 YKYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
.+.|..|+..|+..+ ++.++|+|+.|++... +|+||++|++||||++|++||++|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999998765 4578999999988765 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHH
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDRF 474 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~~ 474 (779)
.||++++.++.+|..|++.|+.+|
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999864
No 42
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.88 E-value=1e-22 Score=188.15 Aligned_cols=103 Identities=32% Similarity=0.510 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcc
Q psy14234 372 LWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYK 451 (779)
Q Consensus 372 ~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~ 451 (779)
++...|..||..|+.++ .+|+|..|||... +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.
T Consensus 3 ~lr~~L~~il~~l~~~~---~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 77 (112)
T cd05528 3 ELRLFLRDVLKRLASDK---RFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALE 77 (112)
T ss_pred HHHHHHHHHHHHHHhCC---CchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 34556789999998875 4899999999876 899999999999999999999999999999999999999999999
Q ss_pred cCCCC----ChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 452 YNPPD----HNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 452 yN~~~----s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
||+++ +.|+.+|..|+++|..++..+.+
T Consensus 78 yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 78 YNPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred HCCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 99994 79999999999999999988654
No 43
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=8.5e-23 Score=189.16 Aligned_cols=104 Identities=18% Similarity=0.344 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhccC---CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 373 WYKYCSEIIAELFHKKH---QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
-++.|..||..|+..++ +.++.+|..+++... +||||++|++||||+||++||.++.|.++++|.+||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 36789999999997554 346788999877554 8999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 450 YKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 450 ~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
+.||+++|.+|.+|..|+++|++.+.++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998875
No 44
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.2e-22 Score=183.22 Aligned_cols=92 Identities=34% Similarity=0.480 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhccc
Q psy14234 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~y 452 (779)
..+.|..||..|+.+. .+++|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.||++|
T Consensus 2 l~~~l~~il~~l~~~~---~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 76 (98)
T cd05513 2 LQKALEQLIRQLQRKD---PHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKY 76 (98)
T ss_pred HHHHHHHHHHHHHcCC---ccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999998765 4889999999765 8999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHH
Q psy14234 453 NPPDHNVVTMARQLSAV 469 (779)
Q Consensus 453 N~~~s~v~~~A~~Lq~~ 469 (779)
|+++|.+|.+|..|...
T Consensus 77 N~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 77 NKPDTIYYKAAKKLLHS 93 (98)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999999764
No 45
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.1e-22 Score=185.37 Aligned_cols=92 Identities=29% Similarity=0.528 Sum_probs=82.9
Q ss_pred HHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCCChH
Q psy14234 380 IIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNV 459 (779)
Q Consensus 380 iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~s~v 459 (779)
.|.......++.+++||+.+++... +||||++|++||||+||++||++|.|.++.+|..||+|||.||++||+++|.+
T Consensus 11 ~i~~~~~~~g~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i 88 (103)
T cd05520 11 TIRNARNNQGQLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRI 88 (103)
T ss_pred HHHhhcCCCCCCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 3333333445679999999998765 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14234 460 VTMARQLSAVFEDR 473 (779)
Q Consensus 460 ~~~A~~Lq~~Fe~~ 473 (779)
|.+|..|+++|+++
T Consensus 89 ~~~A~~L~~~f~~~ 102 (103)
T cd05520 89 YKDAEKLQKLMQAK 102 (103)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
No 46
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.7e-22 Score=184.96 Aligned_cols=100 Identities=25% Similarity=0.439 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 374 YKYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
.+.|.+||..|...+ ++.++++|+.||+... +||||++|++||||+||++||.++.|.++++|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 356777777777654 4679999999988765 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHh
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDRFA 475 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~~~ 475 (779)
.||+++|.||.+|..|+++|.+...
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998754
No 47
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=1.7e-22 Score=183.91 Aligned_cols=97 Identities=27% Similarity=0.462 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcc
Q psy14234 375 KYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYK 451 (779)
Q Consensus 375 k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~ 451 (779)
+++..|+..|+..+ ++..+.+|+.+|+... +||||++|++||||+||++||.++.|.++++|.+||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45666777766644 5678899999998766 899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHH
Q psy14234 452 YNPPDHNVVTMARQLSAVFEDR 473 (779)
Q Consensus 452 yN~~~s~v~~~A~~Lq~~Fe~~ 473 (779)
||+++|.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 48
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.7e-22 Score=183.61 Aligned_cols=96 Identities=27% Similarity=0.436 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHc------CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhh
Q psy14234 127 YIVKNVMKAVWK------HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200 (779)
Q Consensus 127 ~~~~~il~~L~~------~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~ 200 (779)
..|..|++.|.. ++.+++|..||+.. ++||||.+|++||||+||++||.++.|.++.+|+.||.|||.||++
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~--~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~ 80 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKS--EYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACK 80 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcc--cCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 345666666655 46689999999865 8999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHh
Q psy14234 201 YNKPGEDVVLMAQNLEQLFLTKIT 224 (779)
Q Consensus 201 yN~~~s~i~~~A~~Le~~f~~~~~ 224 (779)
||+++|.||.+|..|+++|.++..
T Consensus 81 yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 81 YNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998764
No 49
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.2e-22 Score=183.39 Aligned_cols=97 Identities=20% Similarity=0.399 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 374 YKYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
.+.|.+||..|+..+ ++.++++|..+++... +||||++|++||||+||++||+++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 357888888887754 4578999999988766 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHH
Q psy14234 451 KYNPPDHNVVTMARQLSAVFED 472 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~ 472 (779)
.||+++|.|+.+|..|+++|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999985
No 50
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.8e-22 Score=180.98 Aligned_cols=91 Identities=35% Similarity=0.572 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy14234 374 YKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYN 453 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN 453 (779)
...|..+|..|+.+. .+|+|+.|||... +||||++|++||||+||++||+++.|.++++|..||+|||.||+.||
T Consensus 3 ~~~l~~il~~l~~~~---~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 77 (98)
T cd05512 3 EVLLRKTLDQLQEKD---TAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYN 77 (98)
T ss_pred HHHHHHHHHHHHhCC---CchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 346778899998764 5899999999875 89999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHH
Q psy14234 454 PPDHNVVTMARQLSAV 469 (779)
Q Consensus 454 ~~~s~v~~~A~~Lq~~ 469 (779)
++++.+|++|..|++.
T Consensus 78 ~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 78 AKDTIFYRAAVRLRDQ 93 (98)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999875
No 51
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=4.6e-22 Score=188.29 Aligned_cols=105 Identities=28% Similarity=0.411 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
..+...|..+|..|+....+..+++|..||+... ++|+||++|++||||+||++||.+|.|.++++|..||+|||.||+
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678889999999986556678999999999884 589999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhc
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDRFAK 476 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~~~~ 476 (779)
+||++++.++.+|..|+++|..++..
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999988754
No 52
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.6e-22 Score=185.65 Aligned_cols=100 Identities=38% Similarity=0.681 Sum_probs=92.8
Q ss_pred HHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCC
Q psy14234 377 CSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPD 456 (779)
Q Consensus 377 c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~ 456 (779)
...||.+|+.+. .++||+.|||+.. +|+||++|++||||+||++||.++.|.++++|.+||+|||.||+.||+++
T Consensus 5 l~~ii~~l~~~~---~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 79 (112)
T cd05511 5 LDEIVNELKNLP---DSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPD 79 (112)
T ss_pred HHHHHHHHHhCC---CchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 457888887764 5899999999886 89999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 457 HNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 457 s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
|.++.+|..|..+|+..+..+++..
T Consensus 80 s~i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 80 SVYTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999986554
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.87 E-value=3e-22 Score=222.79 Aligned_cols=201 Identities=34% Similarity=0.544 Sum_probs=162.3
Q ss_pred CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCHHHHHHHHHHHH
Q psy14234 139 HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQL 218 (779)
Q Consensus 139 ~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i~~~A~~Le~~ 218 (779)
....++|+.+|+ +.++|+||.||+.||||.+|+++|..+.|.++++|+.||+|||.||.+||++++.||.+|+.|++.
T Consensus 163 ~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~ 240 (371)
T COG5076 163 RFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKY 240 (371)
T ss_pred cccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHH
Confidence 345677777776 669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy14234 219 FLTKITGMPSEEVVLDAPQPRSSKKKPPVSASPSLNPVIKTPVIPLNKLPSATSTPKPRPPNPVLGSTATTTTAPKVNHL 298 (779)
Q Consensus 219 f~~~~~~~~~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~ 298 (779)
|...+..++........
T Consensus 241 ~~~~i~~~~~~~~~~~~--------------------------------------------------------------- 257 (371)
T COG5076 241 FLKLIEEIPEEMLELSI--------------------------------------------------------------- 257 (371)
T ss_pred HHHHHHhccccchhhcc---------------------------------------------------------------
Confidence 99999987654321000
Q ss_pred CCCCCCCChhHHHhhhhccCCCCCCCCCCCCCCCcchhhhcccccccCCCCCCCCCCCcCCCCCCCCCCCCcHHHHHHHH
Q psy14234 299 NSMNAPDTPDMKKAIKRKADGSIDHTPSSLHPTPVKSAKQLNTRRESGSITKKPQRISEEGGGGSGLGGSKTPLWYKYCS 378 (779)
Q Consensus 299 ~~~~~p~~~~~kk~~krkadtt~d~tPt~~~~~~~~~~~~~~~rres~R~~k~p~~~l~~~~~~~~~~~~~~~~~~k~c~ 378 (779)
.+... .+ +. | -.
T Consensus 258 -------------------------~~~~~------------~~-~~-~-----------------------------~~ 269 (371)
T COG5076 258 -------------------------KPGRE------------ER-EE-R-----------------------------ES 269 (371)
T ss_pred -------------------------Ccccc------------cc-cc-c-----------------------------hh
Confidence 00000 00 00 0 00
Q ss_pred HHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCCCh
Q psy14234 379 EIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHN 458 (779)
Q Consensus 379 ~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~s~ 458 (779)
.++... ..+..+|+|+.++.... .|+|+++|..+|++.+.+-++..+.|....+|..|..++|.||..||.....
T Consensus 270 ~~i~~~---~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
T COG5076 270 VLITNS---QAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTD 344 (371)
T ss_pred hccccc---ccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhh
Confidence 000000 11234799999988776 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy14234 459 VVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 459 v~~~A~~Lq~~Fe~~~~~i 477 (779)
++.-+..+..+|...+..+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 345 YYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred hhhhccchhhhHhhhhhhh
Confidence 9999999998888776654
No 54
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.2e-22 Score=182.66 Aligned_cols=96 Identities=32% Similarity=0.441 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHc------CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhh
Q psy14234 125 LQYIVKNVMKAVWK------HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNC 198 (779)
Q Consensus 125 l~~~~~~il~~L~~------~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na 198 (779)
|+..|..|++.|+. +..+++|+.||+.. .+||||.+|++||||++|++||+.|.|.++.+|..||+|||.||
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na 78 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKK--LYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANA 78 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCC--CCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 46678888888884 45699999999865 79999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q psy14234 199 YVYNKPGEDVVLMAQNLEQLFLTK 222 (779)
Q Consensus 199 ~~yN~~~s~i~~~A~~Le~~f~~~ 222 (779)
++||++++.++.+|..|++.|..+
T Consensus 79 ~~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 79 RTYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999875
No 55
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.9e-22 Score=182.46 Aligned_cols=98 Identities=27% Similarity=0.392 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 374 YKYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
...|..||..|+..+ ++.++|||+++++... +||||++|++||||+||++||.+|.|.++++|..||.|||.||+
T Consensus 4 ~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~ 81 (106)
T cd05525 4 AQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAE 81 (106)
T ss_pred HHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 345667777776644 4578999999988765 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHH
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDR 473 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~ 473 (779)
.||+++|.++.+|..|+++|+..
T Consensus 82 ~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 82 KYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999864
No 56
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=4.8e-22 Score=181.88 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=87.2
Q ss_pred ChHHHHHHHHHHHHHHHc--CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhh
Q psy14234 121 NTNQLQYIVKNVMKAVWK--HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNC 198 (779)
Q Consensus 121 ~~~~l~~~~~~il~~L~~--~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na 198 (779)
++..|..+|..|+..... +..++||+.+++. ..+||||.+|++||||++|++||++|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k--~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSK--KKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCc--ccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 445555566555554443 4568999999885 489999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q psy14234 199 YVYNKPGEDVVLMAQNLEQLFLTK 222 (779)
Q Consensus 199 ~~yN~~~s~i~~~A~~Le~~f~~~ 222 (779)
++||+++|.|+.+|..|+++|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 57
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=3.9e-22 Score=181.68 Aligned_cols=94 Identities=29% Similarity=0.512 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 126 QYIVKNVMKAVWKHPH------AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 126 ~~~~~~il~~L~~~~~------s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
|..|..|++.|+++.. +++|..+++.. .+||||.+|++||||+||++||+.+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~--~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKV--LYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCC--CCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 5677888888887544 79999998854 899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLT 221 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~ 221 (779)
.||+++|.|+.+|..|+++|..
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 58
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.8e-21 Score=184.26 Aligned_cols=105 Identities=27% Similarity=0.400 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHHHHHHH---cCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q psy14234 120 RNTNQLQYIVKNVMKAVW---KHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFT 196 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~---~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~ 196 (779)
.....++..|..+++.|. .++.+++|..||+... .+|+||.+|++||||+||++||++++|.++.+|+.||+|||.
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILS 98 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 456677777788888888 9999999999999754 699999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHhC
Q psy14234 197 NCYVYNKPGEDVVLMAQNLEQLFLTKITG 225 (779)
Q Consensus 197 Na~~yN~~~s~i~~~A~~Le~~f~~~~~~ 225 (779)
||++||+++|.++.+|..|++.|...+..
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998865
No 59
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=8.2e-22 Score=179.61 Aligned_cols=96 Identities=28% Similarity=0.386 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHc--CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 125 LQYIVKNVMKAVWK--HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 125 l~~~~~~il~~L~~--~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
|..++..|+..... +..++||..+|+.. .+||||.+|++||||+||++||+++.|.++.+|+.||+|||.||++||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~--~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKR--KYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcc--cCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34444444433322 35799999999854 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy14234 203 KPGEDVVLMAQNLEQLFLTK 222 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~ 222 (779)
+++|.++.+|..|+++|.++
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 60
>KOG1472|consensus
Probab=99.86 E-value=1.9e-21 Score=223.79 Aligned_cols=101 Identities=31% Similarity=0.639 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhccc
Q psy14234 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~y 452 (779)
.......||..|..+ ..+|||++||+... +||||++|++||||.||+.+|.++.|..+..|..||.+||.||+.|
T Consensus 607 ~~s~~~~il~~l~~h---~~awPf~~Pv~~~e--~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~y 681 (720)
T KOG1472|consen 607 LFSAIQNILDQLQNH---GDAWPFLKPVNKKE--VPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMY 681 (720)
T ss_pred hhHHHHhHHhhhhcC---CccCCccCcccccc--CCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhcc
Confidence 344567777777655 45999999999887 8999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 453 NPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 453 N~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
|+.++..|+.|..|..+|...+....
T Consensus 682 n~~~~~y~k~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 682 NGSDTQYYKCAQALEKFFLFKLNELI 707 (720)
T ss_pred CCccchheecccchhhhhcchhhhhh
Confidence 99999999999999999998877653
No 61
>smart00297 BROMO bromo domain.
Probab=99.86 E-value=1.8e-21 Score=178.53 Aligned_cols=103 Identities=41% Similarity=0.660 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhh
Q psy14234 121 NTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200 (779)
Q Consensus 121 ~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~ 200 (779)
....++.+|..|++.+.+|+.+++|..||+.. .+|+||.+|++||||.+|++||++|.|.++.+|..||.+||.||+.
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 4 LQKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred hHHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999976 6999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhC
Q psy14234 201 YNKPGEDVVLMAQNLEQLFLTKITG 225 (779)
Q Consensus 201 yN~~~s~i~~~A~~Le~~f~~~~~~ 225 (779)
||++++.++.+|..|++.|.+.|.+
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999875
No 62
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1.2e-21 Score=181.57 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 126 QYIVKNVMKAVWKHP------HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 126 ~~~~~~il~~L~~~~------~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
...|..||+.|.++. .+.+|..+++. ..+||||.+|++||||+||++||.++.|.++.+|..||+|||+||+
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~--~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 81 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKR--RNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAK 81 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCc--ccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHH
Confidence 356888899998643 45689998874 4899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLTKITGMPSE 229 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~ 229 (779)
+||+++|.++.+|..|+++|.+.+.++...
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999887543
No 63
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=1.7e-21 Score=177.49 Aligned_cols=97 Identities=30% Similarity=0.420 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHH--HHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 124 QLQYIVKNVMKA--VWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 124 ~l~~~~~~il~~--L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
.++.++..|++. ...+..+.+|+.+|+.. ++||||.+|++||||+||++||.++.|.++.+|..||.|||.||+.|
T Consensus 4 ~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~--~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 4 RMLALFLYVLEYREGSGRRLCDLFMEKPSKK--DYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHHHHHhhccCCCcccHHHhcCCCcc--cCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 455555555543 22456789999999865 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTK 222 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~ 222 (779)
|+++|.|+.+|..|+++|.++
T Consensus 82 N~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999764
No 64
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.6e-21 Score=176.79 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhccc
Q psy14234 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~y 452 (779)
.++.+...|..+....++.++++|..+++... +||||++|++||||++|++||.++.|.++++|..||+|||.||+.|
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666789999999998775 8999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q psy14234 453 NPPDHNVVTMARQLSAVFEDR 473 (779)
Q Consensus 453 N~~~s~v~~~A~~Lq~~Fe~~ 473 (779)
|++++.+|.+|..|++.|+.+
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 65
>smart00297 BROMO bromo domain.
Probab=99.84 E-value=1.3e-20 Score=173.01 Aligned_cols=101 Identities=40% Similarity=0.744 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcc
Q psy14234 372 LWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYK 451 (779)
Q Consensus 372 ~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~ 451 (779)
.....|..|+..+..+ .++|+|..||+... +|+||++|++||||++|++||++|.|.++.+|.+||+|||.||+.
T Consensus 7 ~~~~~~~~i~~~~~~~---~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 7 KLQSLLKAVLDKLDSH---RLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred HHHHHHHHHHHHHHhC---ccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456667777776554 57999999999876 899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 452 YNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 452 yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
||++++.++.+|..|+..|+..|+++
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999763
No 66
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.5e-20 Score=171.93 Aligned_cols=98 Identities=26% Similarity=0.338 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 374 YKYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
.+.|..|+..|+..+ ++..+.+|..+++... +||||++|++||||+||++||++ |.++++|.+||+|||.||+
T Consensus 3 ~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 3 SKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 355777777776644 4567788998777654 89999999999999999999998 9999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHh
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDRFA 475 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~~~ 475 (779)
.||++++.+|.+|..|+++|..++.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998764
No 67
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.6e-20 Score=171.80 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHc-CCCCCCCCCCCCc---cccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 126 QYIVKNVMKAVWK-HPHAWPFHEPVDA---INLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 126 ~~~~~~il~~L~~-~~~s~pF~~PVd~---~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
-++|..++..+.. .+..+||+.||.+ .+.++|+||.+|++||||+||++||++|.|.+++||..||.|||+||.+|
T Consensus 2 ~~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 2 NCLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIF 81 (109)
T ss_pred chhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567778888877 6778999999973 34569999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCC
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTKITGM 226 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~~~~~ 226 (779)
|+++|.++.+|..|.+.....+.+|
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888775
No 68
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=3e-20 Score=169.77 Aligned_cols=92 Identities=27% Similarity=0.369 Sum_probs=83.5
Q ss_pred HHHHHHHHHHc------CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 128 IVKNVMKAVWK------HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 128 ~~~~il~~L~~------~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
.++.|++.|.+ ++.+++|..+|+.. .+||||.+|++||||++|++||.++.|.++.+|+.||.|||.||+.|
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555554 56799999999865 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy14234 202 NKPGEDVVLMAQNLEQLFLT 221 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~ 221 (779)
|++++.|+.+|..|++.|..
T Consensus 83 n~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999976
No 69
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=3.6e-20 Score=169.46 Aligned_cols=95 Identities=26% Similarity=0.356 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 126 QYIVKNVMKAVWKH------PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 126 ~~~~~~il~~L~~~------~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
...|..|++.|++. ..+.+|..+++.. .+||||.+|++||||+||++||++ |.++.+|+.||.|||.||+
T Consensus 3 ~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~--~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 3 SKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRK--DYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHhhcCcCCCCchHhhhcCCccc--cCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 34455556666553 4467899887754 799999999999999999999998 9999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHh
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLTKIT 224 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~~~~ 224 (779)
+||+++|.||.+|..|+++|..++.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998874
No 70
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.80 E-value=9.8e-20 Score=163.17 Aligned_cols=98 Identities=40% Similarity=0.696 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy14234 374 YKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYN 453 (779)
Q Consensus 374 ~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN 453 (779)
...|..|+..|..+. ...+++|..||+... +|+||++|++||||++|++||.+|.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~~~~i~~~l~~~~-~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n 78 (99)
T cd04369 2 KKKLRSLLDALKKLK-RDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYN 78 (99)
T ss_pred HHHHHHHHHHHHhhc-ccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357889999998763 246899999999855 89999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q psy14234 454 PPDHNVVTMARQLSAVFEDRF 474 (779)
Q Consensus 454 ~~~s~v~~~A~~Lq~~Fe~~~ 474 (779)
+.++.++.+|..|+..|++.|
T Consensus 79 ~~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 79 GPGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999764
No 71
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.80 E-value=1e-19 Score=159.60 Aligned_cols=84 Identities=38% Similarity=0.652 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCHH
Q psy14234 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDV 208 (779)
Q Consensus 129 ~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i 208 (779)
|..||+.|++|+.+++|..||+.. .+|+|+.+|++||||.+|++||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 788999999999999999999755 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy14234 209 VLMAQN 214 (779)
Q Consensus 209 ~~~A~~ 214 (779)
+.+|+.
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 72
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.80 E-value=1.4e-19 Score=162.12 Aligned_cols=96 Identities=40% Similarity=0.579 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCC
Q psy14234 126 QYIVKNVMKAVWKH--PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203 (779)
Q Consensus 126 ~~~~~~il~~L~~~--~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~ 203 (779)
...|..|++.|..+ +.+++|..||+.. .+|+||.+|++||||.+|++||.++.|.++.+|..||.+||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35688999999999 9999999999974 6999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14234 204 PGEDVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 204 ~~s~i~~~A~~Le~~f~~~~ 223 (779)
.++.++.+|..|+..|.+.+
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 73
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.79 E-value=1.5e-19 Score=158.59 Aligned_cols=84 Identities=49% Similarity=0.898 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCC
Q psy14234 377 CSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPD 456 (779)
Q Consensus 377 c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~ 456 (779)
|..||..|+.+. .+++|..||+... +|+|+++|++||||++|++||++|.|.++.+|..||++||.||+.||+++
T Consensus 1 C~~il~~l~~~~---~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~ 75 (84)
T PF00439_consen 1 CREILEELMKHP---ISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPD 75 (84)
T ss_dssp HHHHHHHHHTST---TGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHcCC---CchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCc
Confidence 899999999876 5899999996655 89999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHH
Q psy14234 457 HNVVTMARQ 465 (779)
Q Consensus 457 s~v~~~A~~ 465 (779)
+.+|.+|.+
T Consensus 76 s~~~~~A~~ 84 (84)
T PF00439_consen 76 SPIYKAAEK 84 (84)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHhcC
Confidence 999999974
No 74
>KOG0008|consensus
Probab=99.79 E-value=1e-18 Score=206.85 Aligned_cols=219 Identities=28% Similarity=0.502 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCC
Q psy14234 124 QLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203 (779)
Q Consensus 124 ~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~ 203 (779)
.++-++..|++.+...+...+|..||+.. .++|||.||+.||||.++++.+....|.+-++|+.|+.+||.|..+||+
T Consensus 1261 ~~ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng 1338 (1563)
T KOG0008|consen 1261 SLSSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNG 1338 (1563)
T ss_pred ecccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcC
Confidence 57788999999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy14234 204 PGEDVVLMAQNLEQLFLTKITGMPSEEVVLDAPQPRSSKKKPPVSASPSLNPVIKTPVIPLNKLPSATSTPKPRPPNPVL 283 (779)
Q Consensus 204 ~~s~i~~~A~~Le~~f~~~~~~~~~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 283 (779)
+.+.+...++.+..++...|.+-...-.-+ .+ +++
T Consensus 1339 ~~~~~t~~~q~mls~~~~~~~ekedk~~~l---------Ek------------------~In------------------ 1373 (1563)
T KOG0008|consen 1339 PLASLTRQQQSMLSLCFEKLKEKEDKLWRL---------EK------------------AIN------------------ 1373 (1563)
T ss_pred chHHHHHHHHHHHHHHHHhhchhHHHHHHH---------Hh------------------hcC------------------
Confidence 999999999988877766665411000000 00 000
Q ss_pred CCCCCCCCCccccccCCCCCCCChhHHHhhhhccCCCCCCCCCCCCCCCcchhhhcccccccCCCCCCCCCCCcCCCCCC
Q psy14234 284 GSTATTTTAPKVNHLNSMNAPDTPDMKKAIKRKADGSIDHTPSSLHPTPVKSAKQLNTRRESGSITKKPQRISEEGGGGS 363 (779)
Q Consensus 284 ~~~~~~~~~~~s~~~~~~~~p~~~~~kk~~krkadtt~d~tPt~~~~~~~~~~~~~~~rres~R~~k~p~~~l~~~~~~~ 363 (779)
+. |.+.
T Consensus 1374 -------------------------------------------------------------------pl---ld~~---- 1379 (1563)
T KOG0008|consen 1374 -------------------------------------------------------------------PL---LDDD---- 1379 (1563)
T ss_pred -------------------------------------------------------------------cc---cCcc----
Confidence 00 0000
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Q psy14234 364 GLGGSKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVR 443 (779)
Q Consensus 364 ~~~~~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~ 443 (779)
+. ..+-....|+.++.. -+-.|+|+.||+.+. +++||.+|++||||.+|.+++..+.|.+..+|..||+
T Consensus 1380 ----d~--v~~~~~d~~vs~~~~---ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~ 1448 (1563)
T KOG0008|consen 1380 ----DQ--VAFFILDNIVSQMKE---IPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVN 1448 (1563)
T ss_pred ----ch--hhHhhhhhHHHHHHh---cchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhH
Confidence 00 001122344444322 245899999999988 8999999999999999999999999999999999999
Q ss_pred HhhhhhcccCCCCChHHHHHHHHHHHHHHHH
Q psy14234 444 LIFSNCYKYNPPDHNVVTMARQLSAVFEDRF 474 (779)
Q Consensus 444 Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~ 474 (779)
+|+-||..||+..+....-|+++-.+....+
T Consensus 1449 ~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1449 LIYVNSVEYNGAESAYTKKARKIGEVGLANL 1479 (1563)
T ss_pred hhcccceeecCccccccHHHHHHHHHHHHHH
Confidence 9999999999999998888887766655444
No 75
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=6.3e-19 Score=161.38 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=77.3
Q ss_pred ccCccccCCc---cccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHH
Q psy14234 393 AWPFYTPVDV---EKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAV 469 (779)
Q Consensus 393 a~pF~~PVd~---~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~ 469 (779)
.+||..||+. ...++|+||++|++||||+||++||++|.|+++++|.+||+|||+||+.||+++|.++.+|..|.+.
T Consensus 19 ~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d 98 (109)
T cd05492 19 DTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLYRD 98 (109)
T ss_pred cccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 5899999974 4445899999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHhcC
Q psy14234 470 FEDRFAKM 477 (779)
Q Consensus 470 Fe~~~~~i 477 (779)
...-+.+|
T Consensus 99 ~~~el~Ei 106 (109)
T cd05492 99 TCHDLREL 106 (109)
T ss_pred HHHHHHHH
Confidence 77666554
No 76
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.74 E-value=5.5e-18 Score=154.70 Aligned_cols=102 Identities=12% Similarity=0.224 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 373 WYKYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
..+....|+..++.+. ++.++.+|.+.+.. .++||.+|+.||||.+|++||++|.|+++++|..||.|||.||
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~----~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPEL----AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCCc----ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHH
Confidence 3456677777887776 56689999998772 4788999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 450 YKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 450 ~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
++||.+||.||.+|..||.+|.....++.
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888764
No 77
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.73 E-value=8.5e-18 Score=153.45 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q psy14234 124 QLQYIVKNVMKAVWKHPH------AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTN 197 (779)
Q Consensus 124 ~l~~~~~~il~~L~~~~~------s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~N 197 (779)
.+|.++..|+..|++|.+ +.+|.+.+. ..|+||.+|+.||||.+|++||++|.|.++++|..||.+||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~----~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE----LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC----cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 467888899999998764 788998877 2578899999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy14234 198 CYVYNKPGEDVVLMAQNLEQLFLTKITGM 226 (779)
Q Consensus 198 a~~yN~~~s~i~~~A~~Le~~f~~~~~~~ 226 (779)
|++||.+||.||.+|..|+++|...-.++
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876654
No 78
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.69 E-value=3.3e-17 Score=182.47 Aligned_cols=111 Identities=32% Similarity=0.509 Sum_probs=97.8
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 370 TPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 370 ~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
+......|...+..+....+..+.++|+.+|+... +|+||.||+.||||++|+++|.++.|.++++|..||+|||.||
T Consensus 143 ~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~ 220 (371)
T COG5076 143 LYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNC 220 (371)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 34455556666666666677778899999888766 8999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhcCCCchh
Q psy14234 450 YKYNPPDHNVVTMARQLSAVFEDRFAKMPDESN 482 (779)
Q Consensus 450 ~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~~ 482 (779)
++||.++|.||.+|..|++.|..++..++....
T Consensus 221 ~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~ 253 (371)
T COG5076 221 KLYNGPDSSVYVDAKELEKYFLKLIEEIPEEML 253 (371)
T ss_pred hhccCCCcchhhhhHHHHHHHHHHHHhccccch
Confidence 999999999999999999999999998876543
No 79
>KOG1245|consensus
Probab=99.64 E-value=1.5e-16 Score=197.80 Aligned_cols=95 Identities=42% Similarity=0.833 Sum_probs=91.3
Q ss_pred HHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCC
Q psy14234 377 CSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPD 456 (779)
Q Consensus 377 c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~ 456 (779)
|..||.+|+.|+. +|||++||+... +|+||+||++||||+||+.|+..|.|.++++|..||.|||+||..||..
T Consensus 1306 ~e~il~e~~~~~~---awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~- 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA---AWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED- 1379 (1404)
T ss_pred HHHHHHHHHHhhh---cchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-
Confidence 8999999998864 999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcC
Q psy14234 457 HNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 457 s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
+.|+..+..|+++|+.+|...
T Consensus 1380 s~i~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1380 SEIGRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhhhhcchHHHHHHHHHHhh
Confidence 999999999999999988764
No 80
>KOG1245|consensus
Probab=99.61 E-value=5.6e-16 Score=192.82 Aligned_cols=96 Identities=31% Similarity=0.603 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCHH
Q psy14234 129 VKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDV 208 (779)
Q Consensus 129 ~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i 208 (779)
|..||..|+.|..+|||+.||++. .+||||.||++||||.||+.||..|.|.++.+|..||.|||.||.+||.+ |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 899999999999999999999976 79999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q psy14234 209 VLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 209 ~~~A~~Le~~f~~~~~~~~ 227 (779)
+..+..|.++|...|..+.
T Consensus 1383 ~~ag~~l~~ff~~~~~~~~ 1401 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKKF 1401 (1404)
T ss_pred hhhcchHHHHHHHHHHhhc
Confidence 9999999999999887653
No 81
>KOG1828|consensus
Probab=99.45 E-value=9.4e-14 Score=148.13 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCH
Q psy14234 128 IVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGED 207 (779)
Q Consensus 128 ~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~ 207 (779)
..+.++..+-+...-..|..||... -.|+|.+||..|||+.||+.+++.++|.++.+|..|+++|+.|+..||..+..
T Consensus 23 ~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv 100 (418)
T KOG1828|consen 23 DAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTV 100 (418)
T ss_pred hHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcc
Confidence 3445555555555566677788765 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14234 208 VVLMAQNLEQLFLTKI 223 (779)
Q Consensus 208 i~~~A~~Le~~f~~~~ 223 (779)
++..|++|..+.....
T Consensus 101 ~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 101 PIVAAKRLCPVRLGMT 116 (418)
T ss_pred ccccccccchhhcchh
Confidence 9999999977654433
No 82
>KOG1472|consensus
Probab=99.44 E-value=7.6e-14 Score=161.57 Aligned_cols=102 Identities=35% Similarity=0.655 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
..+...+..++..|..|..+|||..||+.. +.||||.+|++||||.||+.+|..++|..+..|+.|+.+||.||++||
T Consensus 605 ~~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn 682 (720)
T KOG1472|consen 605 GKLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYN 682 (720)
T ss_pred chhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccC
Confidence 456667788999999999999999999966 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCC
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKITGM 226 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~~~~ 226 (779)
+.++..|+.|..|+.+|..++...
T Consensus 683 ~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 683 GSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred Cccchheecccchhhhhcchhhhh
Confidence 999999999999999999988875
No 83
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.32 E-value=1.1e-12 Score=121.85 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcC-------CCCCHHHHHHHHHHhhhh
Q psy14234 376 YCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNR-------TYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 376 ~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~-------~Y~s~~eF~~Dv~Lmf~N 448 (779)
.|..+|..|....++..+|||..|||+...++||||++|++||||+||+++|.++ .|..-..+.+++..++.|
T Consensus 4 ~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T cd05494 4 ALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccc
Confidence 4455555555555556799999999998888999999999999999999999987 445455666777777777
Q ss_pred hcccCCC
Q psy14234 449 CYKYNPP 455 (779)
Q Consensus 449 a~~yN~~ 455 (779)
|..||..
T Consensus 84 ~~~~~~~ 90 (114)
T cd05494 84 RSPSNIY 90 (114)
T ss_pred cCccccc
Confidence 7777764
No 84
>KOG0008|consensus
Probab=99.26 E-value=1.6e-12 Score=155.21 Aligned_cols=95 Identities=33% Similarity=0.595 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCC
Q psy14234 127 YIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGE 206 (779)
Q Consensus 127 ~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s 206 (779)
+++..++..++.-..+|+|+.||+.. .+|+||.+|++||||.+|.+++....|.+..+|..|+++|+.||..||+.++
T Consensus 1385 ~~~d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~ 1462 (1563)
T KOG0008|consen 1385 FILDNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAES 1462 (1563)
T ss_pred hhhhhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccc
Confidence 67777888888889999999999976 6899999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14234 207 DVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 207 ~i~~~A~~Le~~f~~~~ 223 (779)
....-|+.+-.+.+..|
T Consensus 1463 ~y~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1463 AYTKKARKIGEVGLANL 1479 (1563)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 76666665555544433
No 85
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.20 E-value=9.6e-12 Score=115.50 Aligned_cols=77 Identities=25% Similarity=0.315 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCC-------CCCHHHHHHHHHHHhhhhhh
Q psy14234 128 IVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNY-------YWSGKEAIQDFTTMFTNCYV 200 (779)
Q Consensus 128 ~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~-------Y~s~~ef~~D~~lmf~Na~~ 200 (779)
.|..+|..+.+|+.+|||..||++.+.++||||.+|++||||+||+++|..+. |..-..+..++..++.||..
T Consensus 7 ~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (114)
T cd05494 7 RVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSP 86 (114)
T ss_pred HHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCc
Confidence 45566777778889999999999977899999999999999999999999874 44444445666666677666
Q ss_pred hCCC
Q psy14234 201 YNKP 204 (779)
Q Consensus 201 yN~~ 204 (779)
||..
T Consensus 87 ~~~~ 90 (114)
T cd05494 87 SNIY 90 (114)
T ss_pred cccc
Confidence 6654
No 86
>KOG1827|consensus
Probab=99.18 E-value=3.1e-11 Score=138.13 Aligned_cols=231 Identities=16% Similarity=0.120 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhh
Q psy14234 125 LQYIVKNVMKAVWKH------PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNC 198 (779)
Q Consensus 125 l~~~~~~il~~L~~~------~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na 198 (779)
++..+..||..|..+ .....|.+..+. ...|+||.+|..||+|..|++|+..+.|.+.+.|..||.+||.||
T Consensus 53 ~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~--~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena 130 (629)
T KOG1827|consen 53 LIPKFKTILASLLDLKDDEGKQLFDKFEKLPSR--KEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENA 130 (629)
T ss_pred HHHHHHHHHHHHHhhccccCcccchhHhhcccc--ccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 333444555555543 346678888774 479999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q psy14234 199 YVYNKPGEDVVLMAQNLEQLFLTKITGMPSEEVVLDAPQPRSSKKKPPVSASPSLNPVIKTPVIPLNKLPSATSTPKPRP 278 (779)
Q Consensus 199 ~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 278 (779)
+.||..++.||.++..|+..|.....+....+.... .. . .+.. ...+....
T Consensus 131 ~~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~----~~----------~-----------~l~~----~~l~~~~~ 181 (629)
T KOG1827|consen 131 RLYNRPDSLIYKDSGELEKYFISLEDEKKDGELSME----SN----------E-----------ELKA----GGLHYHEL 181 (629)
T ss_pred HHhcCcchhhhhhhhhhhcchhhhhccccchhhccc----cc----------c-----------cccc----CCCCcccC
Confidence 999999999999999999999876543110000000 00 0 0000 00000000
Q ss_pred CCCCCCCCCCCCCCccccccCCCCCCCChhHHHhhhhccCCCCCCCCCCCCCCCcchhhhcccccccCCCCCCCCCCCcC
Q psy14234 279 PNPVLGSTATTTTAPKVNHLNSMNAPDTPDMKKAIKRKADGSIDHTPSSLHPTPVKSAKQLNTRRESGSITKKPQRISEE 358 (779)
Q Consensus 279 ~~~~~~~~~~~~~~~~s~~~~~~~~p~~~~~kk~~krkadtt~d~tPt~~~~~~~~~~~~~~~rres~R~~k~p~~~l~~ 358 (779)
.+ ...+.+.- ..+-..+-.
T Consensus 182 ~~--------------------------------------~~i~~~~~-----------------------~~gd~vlv~ 200 (629)
T KOG1827|consen 182 GP--------------------------------------VEIDGTKY-----------------------IVGDYVLVQ 200 (629)
T ss_pred CC--------------------------------------ccccCccc-----------------------ccCceeeec
Confidence 00 00000000 000000000
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHH
Q psy14234 359 GGGGSGLGGSKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEF 438 (779)
Q Consensus 359 ~~~~~~~~~~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF 438 (779)
. .....+. +-.....|+.-+|.+. +++||.+++-+|-+..+.+++..++|.....|
T Consensus 201 ~--~~d~~~p--------------------~v~~Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~ 256 (629)
T KOG1827|consen 201 N--PADNLKP--------------------IVAQIERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLY 256 (629)
T ss_pred C--cccccCC--------------------ceeeecccccCccccc--ccceeEeeCCccCccccccchhcccceecccc
Confidence 0 0000000 0011234666666665 79999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccCCCCChHHHHHHHHHHHHH
Q psy14234 439 ADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFE 471 (779)
Q Consensus 439 ~~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe 471 (779)
..|+.++|.|+..||....-++.++..|...+.
T Consensus 257 ~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv 289 (629)
T KOG1827|consen 257 RDDLVQRLLGKCYVMKPTEYISGDPENLSEEDV 289 (629)
T ss_pred cccHHHHhhcceEEeehhHhhhcCcccccccce
Confidence 999999999999999999999999988866443
No 87
>KOG1827|consensus
Probab=99.04 E-value=2.9e-10 Score=130.26 Aligned_cols=90 Identities=21% Similarity=0.334 Sum_probs=81.4
Q ss_pred HHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHH
Q psy14234 384 LFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMA 463 (779)
Q Consensus 384 l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~s~v~~~A 463 (779)
++...+..+...|.+..+... .++||.+|..||+|..|++|+..+.|.+.+.|..|++|||.||+.||.+++.+|+++
T Consensus 67 ~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s 144 (629)
T KOG1827|consen 67 LKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDS 144 (629)
T ss_pred hccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 334445567888988887766 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy14234 464 RQLSAVFEDRFA 475 (779)
Q Consensus 464 ~~Lq~~Fe~~~~ 475 (779)
..|+..|..+..
T Consensus 145 ~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 145 GELEKYFISLED 156 (629)
T ss_pred hhhhcchhhhhc
Confidence 999999998664
No 88
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.96 E-value=4.1e-10 Score=103.44 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q psy14234 416 KPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDH 457 (779)
Q Consensus 416 ~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~s 457 (779)
.||||+||++||.+|.|.++.+|++||+|||.||++||.++.
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 589999999999999999999999999999999999998743
No 89
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.91 E-value=1.8e-09 Score=99.26 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCC
Q psy14234 165 QPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPG 205 (779)
Q Consensus 165 ~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~ 205 (779)
.||||+||++||.+|+|.++.+|+.||+|||.||+.||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 68999999999999999999999999999999999999763
No 90
>KOG0955|consensus
Probab=98.90 E-value=1.8e-09 Score=130.55 Aligned_cols=107 Identities=26% Similarity=0.398 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
+.++.+|..+++.|...+-...|..|||.. ++|||+++|++||||.||+.+++.+.|.++++|.+|+.+|+.||+.||
T Consensus 564 ~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 564 NPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred chHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 456677888899999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCccc
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKITGMPSEEV 231 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~~~~~~~e~ 231 (779)
..+..+|..|..++......+.....+..
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~arke~e 670 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRNARKEPE 670 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHhcccchh
Confidence 99999999999999999888887766544
No 91
>KOG0955|consensus
Probab=98.86 E-value=3.3e-09 Score=128.42 Aligned_cols=106 Identities=35% Similarity=0.518 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcc
Q psy14234 372 LWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYK 451 (779)
Q Consensus 372 ~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~ 451 (779)
...+.++.+|..|....- ...|..|||... +|||+++|++||||.||+.+++++.|.++++|.+|+.||..||+.
T Consensus 565 p~~kLl~~~l~~lq~kD~---~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 565 PFKKLLQKSLDKLQKKDS---YGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred hHHHHHHHHHHHhhcccc---cCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 344556677777766543 456999999987 899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhcCCCchh
Q psy14234 452 YNPPDHNVVTMARQLSAVFEDRFAKMPDESN 482 (779)
Q Consensus 452 yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~~ 482 (779)
||..+..+|..|..|++.-...+.....+.+
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~arke~e 670 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRNARKEPE 670 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHhcccchh
Confidence 9999999999999999999988887766543
No 92
>KOG0386|consensus
Probab=98.75 E-value=1.1e-08 Score=120.82 Aligned_cols=99 Identities=28% Similarity=0.387 Sum_probs=87.3
Q ss_pred HHHHHHHHHHc------CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 128 IVKNVMKAVWK------HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 128 ~~~~il~~L~~------~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
.|..|+....+ +..+..|...+... .+||||.||+.||++..|+++|.++.|.+..+...||.+||.||++|
T Consensus 1028 ~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k--~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1028 QALKIASTSIKYKDSAGRELSEVFLKLPSRK--EYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHhcccccccccchhcccCcccc--cccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhh
Confidence 45556655554 34577898877744 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
|..||.||.+|..|+.+|......+..
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHHHHhc
Confidence 999999999999999999998888764
No 93
>KOG0386|consensus
Probab=98.74 E-value=1.3e-08 Score=120.09 Aligned_cols=103 Identities=26% Similarity=0.449 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhccC---CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcc
Q psy14234 375 KYCSEIIAELFHKKH---QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYK 451 (779)
Q Consensus 375 k~c~~iL~~l~~~k~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~ 451 (779)
+.|..|+.....+.+ +.....|........ +||||+||+.||++..|+++|.++.|.+..+...||.++|.||+.
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 568888877776554 346678888776665 899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 452 YNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 452 yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
||..||.||.+|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999888754
No 94
>KOG1828|consensus
Probab=97.83 E-value=1.2e-05 Score=86.87 Aligned_cols=89 Identities=16% Similarity=0.029 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCC
Q psy14234 126 QYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPG 205 (779)
Q Consensus 126 ~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~ 205 (779)
+.++...++.|.+-.....|..++-.. ..|.|..+|++|+|++|++.+..++.|.| -+|..|+.+||.||++||.+.
T Consensus 210 ~~l~~~q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehs 286 (418)
T KOG1828|consen 210 QQLQTLQEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHS 286 (418)
T ss_pred HHHHHHHHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcc
Confidence 344445567777777788888888865 68999999999999999999999999999 899999999999999999999
Q ss_pred CHHHHHHHHHHH
Q psy14234 206 EDVVLMAQNLEQ 217 (779)
Q Consensus 206 s~i~~~A~~Le~ 217 (779)
..+|..|+.+..
T Consensus 287 k~yyelank~lh 298 (418)
T KOG1828|consen 287 KSYYELANKQLH 298 (418)
T ss_pred hHHHHHHHhhhh
Confidence 999999887765
No 95
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.43 E-value=0.02 Score=54.39 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 417 PMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 417 PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+...++-+....+.-+|-+.+..+-...
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf 123 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWF 123 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccc
Confidence 88999999999999999999999999999999887666555554444455566777777665544
No 96
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.43 E-value=0.024 Score=53.85 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=50.5
Q ss_pred CCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 166 PMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 166 PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
|-||.-|++||+.|.|.++.+|..||..|+.-++.=-+....+-+.-..+.-+|.+.|..+....
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf 123 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWF 123 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccc
Confidence 88999999999999999999999999999987765544434444444455667888888776543
No 97
>KOG0644|consensus
Probab=92.74 E-value=0.1 Score=61.99 Aligned_cols=61 Identities=28% Similarity=0.461 Sum_probs=53.5
Q ss_pred cCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy14234 163 ITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223 (779)
Q Consensus 163 Ik~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i~~~A~~Le~~f~~~~ 223 (779)
..-|..|..|..||++++|++.+.|..|+..|..||.+|.+.+--+...+..|...|...+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 5568899999999999999999999999999999999999988877777777777776554
No 98
>KOG0644|consensus
Probab=91.53 E-value=0.13 Score=61.21 Aligned_cols=62 Identities=23% Similarity=0.437 Sum_probs=55.1
Q ss_pred hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHHh
Q psy14234 414 IKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFA 475 (779)
Q Consensus 414 Ik~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~ 475 (779)
..-|+.|..|+.+|++++|++.+.|..||-.|.+||.+|..-+.-+...+..|..+|..-+.
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlp 1111 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLP 1111 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhcc
Confidence 45689999999999999999999999999999999999999988777777888888876553
No 99
>KOG3116|consensus
Probab=87.71 E-value=0.48 Score=45.46 Aligned_cols=6 Identities=0% Similarity=0.241 Sum_probs=2.8
Q ss_pred hhcCCC
Q psy14234 716 VTSQID 721 (779)
Q Consensus 716 ~~g~~~ 721 (779)
+.|..+
T Consensus 75 ~~g~~e 80 (177)
T KOG3116|consen 75 TNGKAE 80 (177)
T ss_pred hcchhH
Confidence 455444
No 100
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=83.21 E-value=0.82 Score=53.61 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCCCCCCCCCCccccCCCCchh-hcCCCCCHHHHHH
Q psy14234 131 NVMKAVWKHPHAWPFHEPVDAINLNLPDYHK-VITQPMDLGTIKK 174 (779)
Q Consensus 131 ~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~-iIk~PmDL~tIk~ 174 (779)
.+|.+|-....-..|+.|.. .-||.|. .-+.|-.|-+-++
T Consensus 579 ~l~~a~~a~~~p~~~i~~~~----rr~dl~~a~~r~pk~~~twer 619 (1463)
T PHA03308 579 DLMAALTAIDCPPVTINPAK----RRPDLYQALSRAPKTVFTWER 619 (1463)
T ss_pred HHHHhhhccCCCceeechhh----cChhHHHHHHhCchhhhhHhh
Confidence 35555555555566666433 2466444 3445555555443
No 101
>KOG0732|consensus
Probab=83.01 E-value=0.59 Score=58.16 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=55.7
Q ss_pred ccCccccCCcccc---CCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHH--HHHHhhhhhcccCCCC
Q psy14234 393 AWPFYTPVDVEKL---GLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFAD--DVRLIFSNCYKYNPPD 456 (779)
Q Consensus 393 a~pF~~PVd~~~~---~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~--Dv~Lmf~Na~~yN~~~ 456 (779)
...|..|+..... .+.+|..+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 4567888775322 24599999999999999999999999999999999 9999999999999975
No 102
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=79.42 E-value=1.7 Score=51.14 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhhcccCC
Q psy14234 436 KEFADDVRLIFSNCYKYNP 454 (779)
Q Consensus 436 ~eF~~Dv~Lmf~Na~~yN~ 454 (779)
-.|++|---+-+-|+...+
T Consensus 963 ~afa~dpv~l~ef~kr~sp 981 (1463)
T PHA03308 963 PAFARDPVALGEFCKRISP 981 (1463)
T ss_pred hhhccCchHHHHHHhhcCc
Confidence 3566666666566665544
No 103
>KOG2140|consensus
Probab=78.60 E-value=1.2 Score=50.93 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=10.0
Q ss_pred cCCCchhhhhcCCCCHH
Q psy14234 405 LGLTDYFDIIKKPMDLG 421 (779)
Q Consensus 405 ~~~pdY~~iIk~PMDL~ 421 (779)
+.+-.|-++|.|-+.|.
T Consensus 359 LDlvee~dq~tH~l~l~ 375 (739)
T KOG2140|consen 359 LDLVEEEDQITHSLSLE 375 (739)
T ss_pred cCccchhhheeeeeecc
Confidence 33456666777766544
No 104
>KOG0732|consensus
Probab=76.93 E-value=1.4 Score=55.01 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=55.5
Q ss_pred CCCCCCCCCccc---cCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHH--HHHHHhhhhhhhCCCC
Q psy14234 142 AWPFHEPVDAIN---LNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQ--DFTTMFTNCYVYNKPG 205 (779)
Q Consensus 142 s~pF~~PVd~~~---~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~--D~~lmf~Na~~yN~~~ 205 (779)
...|..|+.... +.+++|..+|+++||+...-.++....|..+.+|.. ++.|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 556777776432 225699999999999999999999999999999999 9999999999999766
No 105
>KOG2130|consensus
Probab=72.28 E-value=2.4 Score=45.78 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=12.1
Q ss_pred CCCCCHHHHHHHHHHhhhhh
Q psy14234 430 RTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 430 ~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
..|.-+.=|.+|+..+..|-
T Consensus 156 ~dY~VPk~F~dDlF~y~g~e 175 (407)
T KOG2130|consen 156 EDYSVPKYFRDDLFQYLGEE 175 (407)
T ss_pred hhcCcchhhhHHHHHhcCcc
Confidence 34666666666666655554
No 106
>KOG2140|consensus
Probab=60.27 E-value=5.5 Score=45.91 Aligned_cols=9 Identities=0% Similarity=0.128 Sum_probs=3.4
Q ss_pred HHHHHHhcC
Q psy14234 469 VFEDRFAKM 477 (779)
Q Consensus 469 ~Fe~~~~~i 477 (779)
.|+..-++|
T Consensus 399 kydaikkei 407 (739)
T KOG2140|consen 399 KYDAIKKEI 407 (739)
T ss_pred HHHHHHHHH
Confidence 333333333
No 107
>KOG2130|consensus
Probab=57.00 E-value=6.3 Score=42.68 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=10.8
Q ss_pred ccCCCCcch---HHHHHHHhhcCCC
Q psy14234 633 INKLPGDKL---GKVVHIIQSREPS 654 (779)
Q Consensus 633 In~LpgekL---~~Vv~IIq~~ep~ 654 (779)
+-++|||-+ +.-.|.|-.-++.
T Consensus 265 c~q~pGEt~fVP~GWWHvVlNle~T 289 (407)
T KOG2130|consen 265 CLQKPGETMFVPSGWWHVVLNLEPT 289 (407)
T ss_pred eeecCCceEEecCCeEEEEeccCce
Confidence 445666643 4444444444443
No 108
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=46.30 E-value=39 Score=30.67 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 429 NRTYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 429 ~~~Y~s~~eF~~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
...|-|..-|...|..|-.....++..+..+..||..++..|++.|.++.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~ 52 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCN 52 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 34688999999999888888888887788999999999999999998654
No 109
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=39.94 E-value=41 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q psy14234 170 GTIKKRLENNYYWSGKEAIQDFTTMFTN 197 (779)
Q Consensus 170 ~tIk~kL~~~~Y~s~~ef~~D~~lmf~N 197 (779)
..|+..+..|.|.|..|+++|..+++.=
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999998887753
No 110
>COG4679 Phage-related protein [Function unknown]
Probab=39.93 E-value=17 Score=33.91 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=55.8
Q ss_pred HccCCCCc---chHHHHHHHhhcCCC-----CCCCCCCcEEEeCCCCChHHHHHHH-------HHHHHHHhhhcCCCCCC
Q psy14234 632 DINKLPGD---KLGKVVHIIQSREPS-----LREPNPDEIEIDFETLKPSTLRELE-------QYVSSCLRKRTYKKTPK 696 (779)
Q Consensus 632 ~In~Lpge---kL~~Vv~IIq~~ep~-----l~~~n~dEIEiD~etL~~~TLreLe-------~yV~~cL~kk~~k~~~k 696 (779)
+|-.||.. .++-.++-||...+. ++...++--||++..+.+.= |-++ -||.-|++||..| +.+
T Consensus 19 ~L~~lp~~~r~~~~~aL~~iq~~~~~~~~~~~~~~G~gv~El~i~~~~g~~-R~~y~~~~~~~vyvLH~FqKKTqk-Tpk 96 (116)
T COG4679 19 DLRALPVSVRAEFGYALDKIQAGGEPLDWKPVSTIGPGVKELRIRDARGIY-RVFYVAKFDEAVYVLHCFQKKTQK-TPK 96 (116)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCCccccCCccccCCCeeEEEeeccCCce-EEEEEEEecceEEeehhhHHhccC-Cch
Confidence 44455554 457777888876544 44566778899977766654 4433 2888899999887 777
Q ss_pred ChhHHHHHHHHHHHHHHh
Q psy14234 697 PKDEKFAEKKHELEKRLQ 714 (779)
Q Consensus 697 s~~~~~~~k~~ele~~l~ 714 (779)
+--+++..+=.+|-+||+
T Consensus 97 ~d~~la~rRykdl~~rl~ 114 (116)
T COG4679 97 RDIDLAKRRYKDLKRRLK 114 (116)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 777777777777777754
No 111
>KOG0577|consensus
Probab=38.74 E-value=2.2e+02 Score=34.29 Aligned_cols=39 Identities=28% Similarity=0.510 Sum_probs=28.8
Q ss_pred cchHHHHHHHhhcCCCCCCCCCCcEEEeCCCCChHHHHHHHHHHHHHHhhhcC
Q psy14234 639 DKLGKVVHIIQSREPSLREPNPDEIEIDFETLKPSTLRELEQYVSSCLRKRTY 691 (779)
Q Consensus 639 ekL~~Vv~IIq~~ep~l~~~n~dEIEiD~etL~~~TLreLe~yV~~cL~kk~~ 691 (779)
.-+..+.||-|..-|-|. +| .=--....||.+||+|-|.
T Consensus 229 NAMSALYHIAQNesPtLq-s~-------------eWS~~F~~Fvd~CLqKipq 267 (948)
T KOG0577|consen 229 NAMSALYHIAQNESPTLQ-SN-------------EWSDYFRNFVDSCLQKIPQ 267 (948)
T ss_pred hHHHHHHHHHhcCCCCCC-Cc-------------hhHHHHHHHHHHHHhhCcc
Confidence 356889999999888885 22 2223456899999998774
No 112
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=31.93 E-value=55 Score=27.71 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 421 GTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 421 ~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
..|+.++..|.|.|..+++.|.-.++.-
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999998877653
No 113
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=26.42 E-value=73 Score=27.84 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=21.9
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhh
Q psy14234 171 TIKKRLENNYYWSGKEAIQDFTTMFT 196 (779)
Q Consensus 171 tIk~kL~~~~Y~s~~ef~~D~~lmf~ 196 (779)
-|+..+..|.|.|..|+++|.-.++.
T Consensus 16 ~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 16 FIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999776664
No 114
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=23.93 E-value=1.8e+02 Score=26.36 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 179 NYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 179 ~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
..|.|..-|...|..|-.....++..+..+..||..+...|.+.|.++.
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~ 52 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCN 52 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4588888888888887777777777788899999999999999998643
No 115
>KOG1924|consensus
Probab=20.11 E-value=5.7e+02 Score=31.70 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=5.0
Q ss_pred HHHHHHHHHccCCC
Q psy14234 624 DEKRQLSLDINKLP 637 (779)
Q Consensus 624 dEK~qLs~~In~Lp 637 (779)
..+..|....+.|+
T Consensus 1086 gqlm~~~~~~~e~~ 1099 (1102)
T KOG1924|consen 1086 GQLMDLTRQNMELP 1099 (1102)
T ss_pred hHHHHHHHHhhccc
Confidence 33333333333333
Done!