Query psy14234
Match_columns 779
No_of_seqs 599 out of 2761
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:50:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uv5_A Transcription initiatio 100.0 5.8E-45 2E-49 385.2 25.9 225 122-478 12-238 (265)
2 3aad_A Transcription initiatio 100.0 3.5E-44 1.2E-48 383.7 21.6 224 122-477 45-270 (292)
3 2r10_A Chromatin structure-rem 100.0 7.8E-42 2.7E-46 375.6 23.4 231 123-477 77-313 (361)
4 2r0y_A Chromatin structure-rem 100.0 3.6E-41 1.2E-45 362.5 19.2 229 124-477 28-263 (311)
5 4alg_A Bromodomain-containing 100.0 3.8E-31 1.3E-35 256.9 13.9 136 109-244 17-152 (154)
6 2ouo_A HUNK1 protein, bromodom 100.0 4.8E-31 1.6E-35 249.3 10.0 127 354-480 3-130 (130)
7 2oss_A HUNK1 protein, bromodom 100.0 3.7E-30 1.3E-34 242.2 15.0 123 108-230 5-127 (127)
8 3jvl_A Bromodomain-containing 100.0 2.7E-29 9.4E-34 234.3 9.7 114 368-481 5-118 (120)
9 2ouo_A HUNK1 protein, bromodom 99.9 1.2E-27 4.1E-32 226.1 11.0 117 112-229 11-130 (130)
10 2oss_A HUNK1 protein, bromodom 99.9 1.3E-26 4.6E-31 218.0 13.9 110 368-480 16-126 (127)
11 2dat_A Possible global transcr 99.9 2E-26 6.8E-31 215.7 14.1 108 370-479 11-121 (123)
12 4alg_A Bromodomain-containing 99.9 1.3E-26 4.5E-31 225.0 12.0 112 368-482 27-139 (154)
13 3g0l_A Hwalp4, bromodomain adj 99.9 2.3E-26 7.8E-31 213.6 12.1 105 369-478 10-114 (117)
14 3g0l_A Hwalp4, bromodomain adj 99.9 2.3E-26 7.7E-31 213.6 11.8 110 116-227 5-114 (117)
15 3d7c_A General control of amin 99.9 3.1E-26 1.1E-30 211.0 11.9 106 120-227 3-108 (112)
16 3jvl_A Bromodomain-containing 99.9 3E-26 1E-30 213.8 11.0 112 119-231 5-119 (120)
17 2grc_A Probable global transcr 99.9 2.3E-26 7.7E-31 217.1 10.1 111 368-480 7-121 (129)
18 2dat_A Possible global transcr 99.9 7.7E-26 2.6E-30 211.8 13.4 106 121-228 10-121 (123)
19 3d7c_A General control of amin 99.9 6.2E-26 2.1E-30 209.0 12.0 105 370-479 5-109 (112)
20 3mb4_A Protein polybromo-1; PB 99.9 6.4E-26 2.2E-30 212.6 11.8 109 369-479 12-123 (124)
21 1e6i_A Transcriptional activat 99.9 7.3E-26 2.5E-30 211.3 11.4 103 373-480 14-116 (121)
22 3fkm_X Signaling protein; brom 99.9 8.2E-26 2.8E-30 222.1 12.3 109 120-228 17-125 (166)
23 3p1f_A CREB-binding protein; s 99.9 1E-25 3.4E-30 209.9 11.2 107 369-477 8-114 (119)
24 3p1f_A CREB-binding protein; s 99.9 1.4E-25 4.8E-30 208.9 11.6 109 118-226 5-114 (119)
25 3fkm_X Signaling protein; brom 99.9 1.2E-25 4.2E-30 220.8 11.8 108 369-479 18-125 (166)
26 3iu5_A Protein polybromo-1; PB 99.9 1.1E-25 3.8E-30 208.6 10.7 106 372-479 5-113 (116)
27 1e6i_A Transcriptional activat 99.9 1.8E-25 6.3E-30 208.6 11.6 102 126-229 15-116 (121)
28 2yyn_A Transcription intermedi 99.9 1.6E-25 5.6E-30 212.7 11.3 107 369-481 17-125 (135)
29 2d9e_A Peregrin; four-helix bu 99.9 1.9E-25 6.4E-30 208.4 11.4 104 122-227 5-108 (121)
30 3nxb_A CAT eye syndrome critic 99.9 2.2E-25 7.6E-30 206.6 11.3 100 372-476 16-115 (116)
31 2d9e_A Peregrin; four-helix bu 99.9 2.5E-25 8.5E-30 207.6 11.6 104 371-479 6-109 (121)
32 2i7k_A Bromodomain-containing 99.9 4.1E-25 1.4E-29 204.8 13.0 106 120-227 4-109 (117)
33 3mb4_A Protein polybromo-1; PB 99.9 1.8E-25 6.1E-30 209.6 10.3 109 118-228 9-123 (124)
34 2i7k_A Bromodomain-containing 99.9 3.8E-25 1.3E-29 205.0 11.5 106 369-479 5-110 (117)
35 3mb3_A PH-interacting protein; 99.9 2.3E-25 7.9E-30 211.9 10.3 106 370-480 19-125 (135)
36 3q2e_A Bromodomain and WD repe 99.9 2.9E-25 9.9E-30 207.9 10.7 106 371-481 9-115 (123)
37 3ljw_A Protein polybromo-1; al 99.9 3E-25 1E-29 206.9 10.4 108 370-479 6-116 (120)
38 3mqm_A Probable histone-lysine 99.9 3E-25 1E-29 208.7 10.4 106 371-478 8-116 (126)
39 3nxb_A CAT eye syndrome critic 99.9 5.2E-25 1.8E-29 204.1 11.7 100 124-225 16-115 (116)
40 2yyn_A Transcription intermedi 99.9 4.6E-25 1.6E-29 209.7 11.5 108 120-230 16-125 (135)
41 3q2e_A Bromodomain and WD repe 99.9 3.5E-25 1.2E-29 207.3 9.9 107 121-229 7-114 (123)
42 3mb3_A PH-interacting protein; 99.9 3.8E-25 1.3E-29 210.4 9.7 107 122-230 19-126 (135)
43 3k2j_A Protein polybromo-1; PB 99.9 1.7E-25 5.8E-30 211.2 6.8 111 368-480 13-126 (130)
44 2grc_A Probable global transcr 99.9 3.9E-25 1.3E-29 208.6 9.2 108 121-230 8-122 (129)
45 3hme_A Bromodomain-containing 99.9 1.1E-24 3.6E-29 204.0 11.8 101 123-225 12-112 (123)
46 3ljw_A Protein polybromo-1; al 99.9 3.7E-25 1.3E-29 206.3 8.6 108 121-230 5-118 (120)
47 3rcw_A Bromodomain-containing 99.9 2.3E-24 7.7E-29 205.1 13.1 103 123-227 12-114 (135)
48 3hme_A Bromodomain-containing 99.9 1.7E-24 5.8E-29 202.6 11.0 102 370-476 11-112 (123)
49 3mqm_A Probable histone-lysine 99.9 1.6E-24 5.5E-29 203.7 10.6 104 122-227 7-116 (126)
50 3rcw_A Bromodomain-containing 99.9 2.6E-24 8.8E-29 204.7 12.0 104 369-477 10-113 (135)
51 3uv4_A Second bromodomain of h 99.9 3.5E-24 1.2E-28 208.6 12.8 108 369-478 22-131 (158)
52 2jns_A Bromodomain-containing 99.9 4.5E-25 1.6E-29 194.5 5.5 82 608-689 5-86 (90)
53 3iu5_A Protein polybromo-1; PB 99.9 1.8E-24 6E-29 200.5 8.5 103 124-228 5-113 (116)
54 3k2j_A Protein polybromo-1; PB 99.9 6E-24 2.1E-28 200.6 10.3 106 122-229 15-126 (130)
55 3uv4_A Second bromodomain of h 99.9 6.3E-24 2.1E-28 206.8 10.7 106 122-229 27-133 (158)
56 3tlp_A Protein polybromo-1; PB 99.9 8.4E-24 2.9E-28 204.7 10.5 107 373-481 25-135 (150)
57 2ri7_A Nucleosome-remodeling f 99.9 1.5E-23 5.1E-28 208.0 11.3 106 120-227 68-173 (174)
58 2ri7_A Nucleosome-remodeling f 99.9 1.6E-23 5.3E-28 207.8 10.5 103 371-478 71-173 (174)
59 3dai_A ATPase family AAA domai 99.9 4E-23 1.4E-27 195.2 11.8 101 122-224 8-112 (130)
60 3tlp_A Protein polybromo-1; PB 99.9 1.7E-23 5.9E-28 202.6 7.5 103 124-228 24-133 (150)
61 2ro1_A Transcription intermedi 99.9 5.4E-23 1.8E-27 206.2 8.3 104 368-481 72-180 (189)
62 3o36_A Transcription intermedi 99.9 1.1E-22 3.7E-27 203.6 10.5 104 368-477 77-182 (184)
63 3o36_A Transcription intermedi 99.9 1.2E-22 4.1E-27 203.3 10.8 105 120-227 77-183 (184)
64 3dai_A ATPase family AAA domai 99.9 2E-22 6.8E-27 190.4 11.6 100 371-475 9-112 (130)
65 2dkw_A Hypothetical protein KI 99.9 2.5E-22 8.5E-27 189.6 11.3 102 119-227 7-113 (131)
66 2ro1_A Transcription intermedi 99.9 2.3E-22 7.9E-27 201.7 7.7 104 120-230 72-180 (189)
67 2dkw_A Hypothetical protein KI 99.9 7.4E-22 2.5E-26 186.4 10.2 97 370-476 10-110 (131)
68 3u5n_A E3 ubiquitin-protein li 99.9 9.4E-22 3.2E-26 200.3 10.9 107 368-480 77-203 (207)
69 3u5n_A E3 ubiquitin-protein li 99.9 1.1E-21 3.7E-26 199.9 11.0 109 119-230 76-204 (207)
70 3uv5_A Transcription initiatio 99.8 1.7E-21 5.8E-26 205.7 11.4 106 370-480 12-117 (265)
71 3aad_A Transcription initiatio 99.8 1.3E-20 4.5E-25 201.4 10.4 103 124-228 169-272 (292)
72 2r0y_A Chromatin structure-rem 99.8 2.8E-20 9.4E-25 200.1 9.3 87 138-226 177-263 (311)
73 2r10_A Chromatin structure-rem 99.8 4.1E-20 1.4E-24 203.0 10.0 86 139-226 228-313 (361)
74 3iu6_A Protein polybromo-1; PB 99.7 6E-18 2.1E-22 160.4 9.6 103 122-230 5-113 (147)
75 3iu6_A Protein polybromo-1; PB 99.7 1.7E-17 5.9E-22 157.3 9.7 104 372-481 7-113 (147)
76 3lqh_A Histone-lysine N-methyl 99.4 5.8E-14 2E-18 139.2 6.7 97 122-231 73-169 (183)
77 3lqh_A Histone-lysine N-methyl 99.4 2.5E-13 8.7E-18 134.5 7.6 94 373-482 76-169 (183)
78 2lm0_A AF4/FMR2 family member 93.8 0.086 2.9E-06 47.7 5.8 60 622-683 60-120 (125)
79 1yke_B RNA polymerase II holoe 35.5 1.2E+02 0.0043 28.4 8.3 43 468-524 71-113 (151)
80 1ykh_B RNA polymerase II holoe 31.7 1.4E+02 0.0049 27.2 7.9 43 468-524 71-113 (132)
81 3twe_A Alpha4H; unknown functi 25.5 1E+02 0.0035 19.7 3.8 21 499-519 4-24 (27)
No 1
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=100.00 E-value=5.8e-45 Score=385.16 Aligned_cols=225 Identities=28% Similarity=0.501 Sum_probs=190.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
...|..+|..||..|++|+.+|||..||++. .+||||.+|++||||+||++||++|.|.++.+|+.||+|||+||++|
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhc
Confidence 5689999999999999999999999999976 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTKITGMPSEEVVLDAPQPRSSKKKPPVSASPSLNPVIKTPVIPLNKLPSATSTPKPRPPNP 281 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~~~~~~~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 281 (779)
|+++|.|+.+|..|+.+|.+.|.++......
T Consensus 90 N~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~------------------------------------------------- 120 (265)
T 3uv5_A 90 NGPKHSLTQISQSMLDLCDEKLKEKEDKLAR------------------------------------------------- 120 (265)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTHHHHHH-------------------------------------------------
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhhhh-------------------------------------------------
Confidence 9999999999999999999999875221000
Q ss_pred CCCCCCCCCCCccccccCCCCCCCChhHHHhhhhccCCCCCCCCCCCCCCCcchhhhcccccccCCCCCCCCCCCcCCCC
Q psy14234 282 VLGSTATTTTAPKVNHLNSMNAPDTPDMKKAIKRKADGSIDHTPSSLHPTPVKSAKQLNTRRESGSITKKPQRISEEGGG 361 (779)
Q Consensus 282 ~~~~~~~~~~~~~s~~~~~~~~p~~~~~kk~~krkadtt~d~tPt~~~~~~~~~~~~~~~rres~R~~k~p~~~l~~~~~ 361 (779)
..++. .| ... +
T Consensus 121 ---------------------------~ek~i----------~p--------------------------~~d---d--- 131 (265)
T 3uv5_A 121 ---------------------------LEKAI----------NP--------------------------LLD---D--- 131 (265)
T ss_dssp ---------------------------HHHHH----------ST--------------------------TTT---C---
T ss_pred ---------------------------hhhhh----------hh--------------------------ccc---c---
Confidence 00000 00 000 0
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHH
Q psy14234 362 GSGLGGSKTPLWYKYCSEIIAELFHK--KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFA 439 (779)
Q Consensus 362 ~~~~~~~~~~~~~k~c~~iL~~l~~~--k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~ 439 (779)
.....|..||..++.+ ..+..+|||+.||+... +||||+||++||||+||++||++|.|.++.+|.
T Consensus 132 ----------~~~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~ 199 (265)
T 3uv5_A 132 ----------DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFL 199 (265)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred ----------chhhHHHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHH
Confidence 0122234444444332 22356999999999876 899999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 440 DDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 440 ~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
.||+|||.||++||+++|.||.+|..|+.+|+..|.++.
T Consensus 200 ~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 200 DDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985
No 2
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-44 Score=383.73 Aligned_cols=224 Identities=29% Similarity=0.492 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
...|..+|..||+.|+.|+.+|||..||++. .+||||.+|++||||+||++||+++.|.++.+|..||+|||.||++|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTKITGMPSEEVVLDAPQPRSSKKKPPVSASPSLNPVIKTPVIPLNKLPSATSTPKPRPPNP 281 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~~~~~~~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 281 (779)
|++++.|+.+|..|+++|.+.|.++.......
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~~~~~~------------------------------------------------ 154 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKEDKLARL------------------------------------------------ 154 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHHHHHHH------------------------------------------------
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcchhhhhhh------------------------------------------------
Confidence 99999999999999999988777642110000
Q ss_pred CCCCCCCCCCCccccccCCCCCCCChhHHHhhhhccCCCCCCCCCCCCCCCcchhhhcccccccCCCCCCCCCCCcCCCC
Q psy14234 282 VLGSTATTTTAPKVNHLNSMNAPDTPDMKKAIKRKADGSIDHTPSSLHPTPVKSAKQLNTRRESGSITKKPQRISEEGGG 361 (779)
Q Consensus 282 ~~~~~~~~~~~~~s~~~~~~~~p~~~~~kk~~krkadtt~d~tPt~~~~~~~~~~~~~~~rres~R~~k~p~~~l~~~~~ 361 (779)
. ++ . .|.. + +
T Consensus 155 ----------------------------e-----~~--i---~Pl~---------------------------d--d--- 164 (292)
T 3aad_A 155 ----------------------------E-----KA--I---NPLL---------------------------D--D--- 164 (292)
T ss_dssp ----------------------------H-----HT--T---SSST---------------------------T--C---
T ss_pred ----------------------------h-----hc--c---cccc---------------------------c--c---
Confidence 0 00 0 0000 0 0
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHH
Q psy14234 362 GSGLGGSKTPLWYKYCSEIIAELFHK--KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFA 439 (779)
Q Consensus 362 ~~~~~~~~~~~~~k~c~~iL~~l~~~--k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~ 439 (779)
.....|..+|..++.. ..+..+|||+.|||... +||||+||++||||+||++||++|.|.++.+|.
T Consensus 165 ----------~~~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~ 232 (292)
T 3aad_A 165 ----------DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFL 232 (292)
T ss_dssp ----------HHHHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred ----------chhHHHHHHHHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHH
Confidence 0001233344444321 23457999999999765 899999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 440 DDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 440 ~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
+||+|||.||++||+++|.||.+|..|+++|+..|..+
T Consensus 233 ~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 270 (292)
T 3aad_A 233 DDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 270 (292)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 3
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=100.00 E-value=7.8e-42 Score=375.56 Aligned_cols=231 Identities=19% Similarity=0.273 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHHHcC--CCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhh
Q psy14234 123 NQLQYIVKNVMKAVWKH--PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~--~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~ 200 (779)
..|..+|..+|+.|.+. ..+++|+.||+.. ++||||.||++||||+||++|| ..+|.++.+|+.||+|||.||++
T Consensus 77 ~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~--~~PdY~~iIk~Pmdl~tI~~kl-~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 77 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRK--FHPQYYYKIQQPMSINEIKSRD-YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHTSC-CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcccHHhcCCCCcc--cCCChHhhcCCCcCHHHHHHHh-hccCCCHHHHHHHHHHHHHHHhh
Confidence 34677888888888663 4589999999954 8999999999999999999999 33334899999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q psy14234 201 YNKPGEDVVLMAQNLEQLFLTKITGMPSEEVVLDAPQPRSSKKKPPVSASPSLNPVIKTPVIPLNKLPSATSTPKPRPPN 280 (779)
Q Consensus 201 yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 280 (779)
||+++|.||.+|..|+++|.+.|.+... ... .. .+
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~k~------------~~~------~~-----------~i---------------- 188 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKAKN------------LKR------NY-----------LI---------------- 188 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHHHT------------TTT------CC-----------BC----------------
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhccc------------cCC------cC-----------cC----------------
Confidence 9999999999999999999999885310 000 00 00
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCChhHHHhhhhccCCCCCCCCCCCCCCCcchhhhcccccccCCCCCCCCCCCcCCC
Q psy14234 281 PVLGSTATTTTAPKVNHLNSMNAPDTPDMKKAIKRKADGSIDHTPSSLHPTPVKSAKQLNTRRESGSITKKPQRISEEGG 360 (779)
Q Consensus 281 ~~~~~~~~~~~~~~s~~~~~~~~p~~~~~kk~~krkadtt~d~tPt~~~~~~~~~~~~~~~rres~R~~k~p~~~l~~~~ 360 (779)
+...+++..+-.++-. .. .+
T Consensus 189 -------------------------~~~~k~~l~~~~~~l~--~~-----~~---------------------------- 208 (361)
T 2r10_A 189 -------------------------NSEVKAKLLHYLNKLV--DA-----TE---------------------------- 208 (361)
T ss_dssp -------------------------CHHHHHHHHHHHHHHH--HC-----CH----------------------------
T ss_pred -------------------------CHHHHHHHHHHHHHhh--cc-----ch----------------------------
Confidence 0001111111000000 00 00
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHh----ccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHH
Q psy14234 361 GGSGLGGSKTPLWYKYCSEIIAELFH----KKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAK 436 (779)
Q Consensus 361 ~~~~~~~~~~~~~~k~c~~iL~~l~~----~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~ 436 (779)
. .+..++..... ..++.++|||+.|||... +||||+||++||||+||++||++|.|.+++
T Consensus 209 -----------~---~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ 272 (361)
T 2r10_A 209 -----------K---KINQALLGASSPKNLDDKVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIY 272 (361)
T ss_dssp -----------H---HHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHH
T ss_pred -----------H---HHHHHHhccccccccccCCcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHH
Confidence 0 00000000000 013468999999999875 899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 437 EFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 437 eF~~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
+|.+||+|||.||++||+++|.||.+|..|+.+|+.+|.++
T Consensus 273 ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 313 (361)
T 2r10_A 273 DFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 313 (361)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999874
No 4
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=100.00 E-value=3.6e-41 Score=362.50 Aligned_cols=229 Identities=20% Similarity=0.279 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHc--CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCC-CHHHHHHHHHHHhhhhhh
Q psy14234 124 QLQYIVKNVMKAVWK--HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYW-SGKEAIQDFTTMFTNCYV 200 (779)
Q Consensus 124 ~l~~~~~~il~~L~~--~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~-s~~ef~~D~~lmf~Na~~ 200 (779)
.|+..|..+|..+.+ ...+++|+.||+.. ++||||.||++||||+||++|| +.|. ++.+|+.||+|||.||++
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~--~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~ 103 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRK--FHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 103 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHH
Confidence 344445555555544 24689999999954 8999999999999999999999 4444 899999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCC
Q psy14234 201 YNKPGEDVVLMAQNLEQLFLTKITGMPSEEVVLDAPQPRSSKKKPPVSASPSLNPVIKTPVIPLNKLPSATSTPKPRPPN 280 (779)
Q Consensus 201 yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 280 (779)
||+++|.||.+|..|+++|.++|.+.... .+. . .+
T Consensus 104 yN~~~s~i~~~A~~l~~~~~~~~~k~k~~------------~~~------~-----------~i---------------- 138 (311)
T 2r0y_A 104 YNEYDSLIVKNSMQVVMLIEFEVLKAKNL------------KRN------Y-----------LI---------------- 138 (311)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHTG------------GGC------C-----------BC----------------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhcccC------------CCC------C-----------CC----------------
Confidence 99999999999999999999999853100 000 0 00
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCChhHHHhhhhccCCCCCCCCCCCCCCCcchhhhcccccccCCCCCCCCCCCcCCC
Q psy14234 281 PVLGSTATTTTAPKVNHLNSMNAPDTPDMKKAIKRKADGSIDHTPSSLHPTPVKSAKQLNTRRESGSITKKPQRISEEGG 360 (779)
Q Consensus 281 ~~~~~~~~~~~~~~s~~~~~~~~p~~~~~kk~~krkadtt~d~tPt~~~~~~~~~~~~~~~rres~R~~k~p~~~l~~~~ 360 (779)
+...++...+..++. ... .
T Consensus 139 -------------------------~~~~k~~l~~~~~~l---~~~----~----------------------------- 157 (311)
T 2r0y_A 139 -------------------------NSEVKAKLLHYLNKL---VDA----T----------------------------- 157 (311)
T ss_dssp -------------------------CHHHHHHHHHHHHHH---HHC----C-----------------------------
T ss_pred -------------------------ChHHHHHHHHHHHHH---Hhh----h-----------------------------
Confidence 000111111000000 000 0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHh----ccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHH
Q psy14234 361 GGSGLGGSKTPLWYKYCSEIIAELFH----KKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAK 436 (779)
Q Consensus 361 ~~~~~~~~~~~~~~k~c~~iL~~l~~----~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~ 436 (779)
. ..+..+|..... ...+.++|||+.|||... +||||+||++||||+||++||++|.|.+++
T Consensus 158 ----------~---~~i~~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ 222 (311)
T 2r0y_A 158 ----------E---KKINQALLGASSPKNLDDKVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIY 222 (311)
T ss_dssp ----------H---HHHHHHHHGGGSCSSCCCSSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHH
T ss_pred ----------H---HHHHHHHhccccccccccCCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHH
Confidence 0 000001100000 013468999999999875 899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 437 EFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 437 eF~~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
+|.+||+|||.||++||+++|.||.+|..|+++|+.+|++.
T Consensus 223 ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 263 (311)
T 2r0y_A 223 DFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999874
No 5
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.97 E-value=3.8e-31 Score=256.93 Aligned_cols=136 Identities=62% Similarity=1.108 Sum_probs=115.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHH
Q psy14234 109 PPVVPPKHRPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188 (779)
Q Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~ 188 (779)
.++++++.++++.+++|+++|..||+.|++++.+|||..||++.++++||||.+|++||||+||++||+++.|.++.+|+
T Consensus 17 ~~~~~~p~~~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~ 96 (154)
T 4alg_A 17 GSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECM 96 (154)
T ss_dssp ---------CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CCCCCCCCCCCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHH
Confidence 34566788999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCC
Q psy14234 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEEVVLDAPQPRSSKKK 244 (779)
Q Consensus 189 ~D~~lmf~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e~~~~~~~~k~~~~k 244 (779)
.||+|||.||++||++++.|+.+|..|+++|++.|.+|+.++.++..+.++++.++
T Consensus 97 ~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~e~~~~~~k~k~~~ 152 (154)
T 4alg_A 97 QDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKNSHKK 152 (154)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCCBCCC---------
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhccccCCCCCcCCCC
Confidence 99999999999999999999999999999999999999999988887777766553
No 6
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.97 E-value=4.8e-31 Score=249.32 Aligned_cols=127 Identities=58% Similarity=1.002 Sum_probs=107.3
Q ss_pred CCCcCCCCCCCCCC-CCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCC
Q psy14234 354 RISEEGGGGSGLGG-SKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTY 432 (779)
Q Consensus 354 ~~l~~~~~~~~~~~-~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y 432 (779)
++++++......++ ++++.++++|..||..|+.+++..++|||+.|||+..+++||||+||++||||+||++||++|.|
T Consensus 3 ~~~p~s~~~~~~~k~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y 82 (130)
T 2ouo_A 3 KDVPDSQQHPAPEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREY 82 (130)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCC
Confidence 45666665555555 88999999999999999988766679999999999988899999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCc
Q psy14234 433 KTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480 (779)
Q Consensus 433 ~s~~eF~~Dv~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~ 480 (779)
.++++|.+||+|||.||++||+++|.||.+|..|+++|+.+|++||+|
T Consensus 83 ~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~e 130 (130)
T 2ouo_A 83 RDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999999999864
No 7
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.97 E-value=3.7e-30 Score=242.23 Aligned_cols=123 Identities=64% Similarity=1.217 Sum_probs=116.8
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHH
Q psy14234 108 QPPVVPPKHRPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEA 187 (779)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef 187 (779)
++|++..+.++++.+++|+.+|..||+.|++|+.+|+|..||++.++++||||.+|++||||+||++||++|.|.++.+|
T Consensus 5 p~p~~~~~~~~~r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef 84 (127)
T 2oss_A 5 PPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQEC 84 (127)
T ss_dssp CCCCCCCTTSCCCCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHH
T ss_pred CCCCcCCcCcCcccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 45566677889999999999999999999999999999999998777899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 188 IQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 188 ~~D~~lmf~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
+.||+|||.||++||+++|.|+.+|..|++.|.++|++|+.+|
T Consensus 85 ~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~~e 127 (127)
T 2oss_A 85 IQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE 127 (127)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999999999999998764
No 8
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.96 E-value=2.7e-29 Score=234.28 Aligned_cols=114 Identities=65% Similarity=1.137 Sum_probs=108.2
Q ss_pred CCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q psy14234 368 SKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447 (779)
Q Consensus 368 ~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~ 447 (779)
..+++++++|..||..|+.+++..++|||..|||+..+++||||++|++||||+||++||++|.|.++++|.+||+|||.
T Consensus 5 ~~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~ 84 (120)
T 3jvl_A 5 SKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFS 84 (120)
T ss_dssp CSSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999998877789999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 448 Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
||++||+++|.|+.+|..|+++|++.|++++.++
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 85 NCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 9999999999999999999999999999999765
No 9
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.94 E-value=1.2e-27 Score=226.06 Aligned_cols=117 Identities=38% Similarity=0.736 Sum_probs=102.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHcCCC---CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHH
Q psy14234 112 VPPKHRPGRNTNQLQYIVKNVMKAVWKHPH---AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAI 188 (779)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~il~~L~~~~~---s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~ 188 (779)
.+++.++++.+++++. |..||+.|+.++. +|||..||++..+++||||.+|++||||+||++||++|.|.++.+|.
T Consensus 11 ~~~~~k~~~~~~~l~~-c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~ 89 (130)
T 2ouo_A 11 HPAPEKSSKVSEQLKC-CSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFG 89 (130)
T ss_dssp --------CHHHHHHH-HHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CCCCCCCcccHHHHHH-HHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 3456777888888865 6789999998874 89999999998778999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Q psy14234 189 QDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSE 229 (779)
Q Consensus 189 ~D~~lmf~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~ 229 (779)
.||+|||.||++||+++|.|+.+|..|++.|.++|.+||.+
T Consensus 90 ~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~e 130 (130)
T 2ouo_A 90 ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130 (130)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999863
No 10
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.94 E-value=1.3e-26 Score=217.99 Aligned_cols=110 Identities=37% Similarity=0.776 Sum_probs=99.6
Q ss_pred CCcHHHHH-HHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q psy14234 368 SKTPLWYK-YCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446 (779)
Q Consensus 368 ~~~~~~~k-~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf 446 (779)
++++.+++ .|..||..|+.+. .+|+|..|||+..+++||||+||++||||+||++||++|.|.++++|.+||+|||
T Consensus 16 ~r~~~~l~~~~~~il~~L~~~~---~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 92 (127)
T 2oss_A 16 KRQTNQLQYLLRVVLKTLWKHQ---FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMF 92 (127)
T ss_dssp CCCCHHHHHHHHTHHHHHHTST---TCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCc---cchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444554 5567899998764 6899999999987789999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCc
Q psy14234 447 SNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480 (779)
Q Consensus 447 ~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~ 480 (779)
.||++||+++|.||.+|..|+++|+++|++++.+
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 93 TNCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999864
No 11
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=2e-26 Score=215.74 Aligned_cols=108 Identities=22% Similarity=0.433 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHHHHhccC---CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q psy14234 370 TPLWYKYCSEIIAELFHKKH---QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446 (779)
Q Consensus 370 ~~~~~k~c~~iL~~l~~~k~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf 446 (779)
...+.+.|..||+.|+.+++ +.++|+|+.||+... +||||+||++||||+||++||+++.|.++++|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 46788999999999999864 458999999999764 8999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 447 SNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 447 ~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
.||++||++++.||.+|..|+++|+++|+++|.
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999985
No 12
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=1.3e-26 Score=224.98 Aligned_cols=112 Identities=39% Similarity=0.808 Sum_probs=100.8
Q ss_pred CCcHHHHHH-HHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q psy14234 368 SKTPLWYKY-CSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446 (779)
Q Consensus 368 ~~~~~~~k~-c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf 446 (779)
++++.+++. |..||..|+.+. ++|||+.|||+..+++||||+||++||||+||++||+++.|.++++|++||+|||
T Consensus 27 ~r~t~~l~~~~~~il~~l~~~~---~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 103 (154)
T 4alg_A 27 GRVTNQLQYLHKVVMKALWKHQ---FAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMF 103 (154)
T ss_dssp CCCBHHHHHHHHTHHHHHHTST---TCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhCc---CchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 444555555 456678887764 6999999999998889999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCchh
Q psy14234 447 SNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDESN 482 (779)
Q Consensus 447 ~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~~ 482 (779)
.||++||++++.||.+|..|+++|+++|++++.+..
T Consensus 104 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~ 139 (154)
T 4alg_A 104 TNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQ 139 (154)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 999999999999999999999999999999987654
No 13
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=2.3e-26 Score=213.57 Aligned_cols=105 Identities=32% Similarity=0.628 Sum_probs=98.5
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 369 KTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 369 ~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
.....++.|..||..|+.++ .+|||..|||... +||||++|++||||+||++||++|.|.++++|.+||+|||.|
T Consensus 10 ~~~~~~~~c~~il~~l~~~~---~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (117)
T 3g0l_A 10 DDSKDLALCSMILTEMETHE---DAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDN 84 (117)
T ss_dssp CCTTHHHHHHHHHHHHHTST---TCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCC---CchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 34568899999999999875 5899999999876 899999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 449 CYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 449 a~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
|+.||+++|.|+.+|..|+++|+++|+++.
T Consensus 85 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 85 CETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998763
No 14
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=2.3e-26 Score=213.59 Aligned_cols=110 Identities=28% Similarity=0.505 Sum_probs=102.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy14234 116 HRPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMF 195 (779)
Q Consensus 116 ~~~~~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf 195 (779)
+++++.......+|..||+.|++|+.+|||..||++. .+||||.+|++||||+||++||++|.|.++.+|+.||+|||
T Consensus 5 ~k~~~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (117)
T 3g0l_A 5 KKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF 82 (117)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4455666677788999999999999999999999976 69999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 196 TNCYVYNKPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 196 ~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
.||++||+++|.|+.+|..|++.|++.|.++.
T Consensus 83 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 83 DNCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 15
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=3.1e-26 Score=210.99 Aligned_cols=106 Identities=36% Similarity=0.646 Sum_probs=101.9
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
+...+|+..|..||+.|++|+.+++|..||++. ++||||.+|++||||+||++||++|.|.++.+|..||+|||.||+
T Consensus 3 ~~~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 80 (112)
T 3d7c_A 3 EDPDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCR 80 (112)
T ss_dssp CSHHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999975 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
+||+++|.|+.+|..|++.|.+.|++++
T Consensus 81 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 81 EYNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999875
No 16
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.93 E-value=3e-26 Score=213.75 Aligned_cols=112 Identities=39% Similarity=0.735 Sum_probs=101.3
Q ss_pred CCChHHHHHHHHHHHHHHHcCCC---CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy14234 119 GRNTNQLQYIVKNVMKAVWKHPH---AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMF 195 (779)
Q Consensus 119 ~~~~~~l~~~~~~il~~L~~~~~---s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf 195 (779)
+..+.+++ .|..||..|+.++. +|||..||++..+++||||.+|++||||+||++||++|.|.++.+|+.||+|||
T Consensus 5 ~~~~~~l~-~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (120)
T 3jvl_A 5 SKISEQLK-CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMF 83 (120)
T ss_dssp CSSCHHHH-HHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred hhhHHHHH-HHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 34455655 56788999999887 999999999987779999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCccc
Q psy14234 196 TNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEEV 231 (779)
Q Consensus 196 ~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e~ 231 (779)
.||++||+++|.|+.+|..|++.|.+.|.+|+.++.
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~~ 119 (120)
T 3jvl_A 84 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPE 119 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC---
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 999999999999999999999999999999987653
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=2.3e-26 Score=217.08 Aligned_cols=111 Identities=22% Similarity=0.414 Sum_probs=102.8
Q ss_pred CCcHHHHHHHHHHHHHHHhcc----CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Q psy14234 368 SKTPLWYKYCSEIIAELFHKK----HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVR 443 (779)
Q Consensus 368 ~~~~~~~k~c~~iL~~l~~~k----~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~ 443 (779)
+..+.+.+.|..||..|+.++ ++.++|+|+.||+... +||||+||++||||+||++||++|.|.++.+|.+||+
T Consensus 7 ~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~ 84 (129)
T 2grc_A 7 PNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVM 84 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 345688999999999999876 3468999999999754 8999999999999999999999999999999999999
Q ss_pred HhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCc
Q psy14234 444 LIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480 (779)
Q Consensus 444 Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~ 480 (779)
|||.||++||+++|.||.+|..|+++|+.+|++++..
T Consensus 85 Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 85 LLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999998654
No 18
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=7.7e-26 Score=211.75 Aligned_cols=106 Identities=23% Similarity=0.332 Sum_probs=100.5
Q ss_pred ChHHHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy14234 121 NTNQLQYIVKNVMKAVWKHP------HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTM 194 (779)
Q Consensus 121 ~~~~l~~~~~~il~~L~~~~------~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lm 194 (779)
....|+..|..||+.|+++. .+|+|..||+.. ++||||.+|++||||+||++||+++.|.++.+|+.||+||
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 87 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLL 87 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 35788999999999999986 699999999964 8999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14234 195 FTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 195 f~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
|.||++||++++.|+.+|..|+++|++.++++|+
T Consensus 88 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 88 CHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999875
No 19
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=6.2e-26 Score=209.01 Aligned_cols=105 Identities=30% Similarity=0.595 Sum_probs=98.9
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 370 TPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 370 ~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
...+...|..||..|..+. .+|||..|||... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||
T Consensus 5 ~~~l~~~~~~il~~l~~~~---~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na 79 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHP---SAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANC 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSG---GGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---CchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHH
Confidence 3578899999999999875 5899999999874 8999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 450 YKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 450 ~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
+.||+++|.++.+|..|+++|+++|+++..
T Consensus 80 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 80 REYNPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999998753
No 20
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=6.4e-26 Score=212.62 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=101.1
Q ss_pred CcHHHHHHHHHHHHHHHhccC---CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHh
Q psy14234 369 KTPLWYKYCSEIIAELFHKKH---QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLI 445 (779)
Q Consensus 369 ~~~~~~k~c~~iL~~l~~~k~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lm 445 (779)
..+.+.+.|..||..|+..++ +.++|+|..||+... +||||+||++||||+||++||++|.|.++++|..||+||
T Consensus 12 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 89 (124)
T 3mb4_A 12 YMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMM 89 (124)
T ss_dssp CCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 355788999999999998554 678999999999765 899999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 446 FSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 446 f~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
|.||++||+++|.||.+|..|+++|+++|.++..
T Consensus 90 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 90 FNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998853
No 21
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.93 E-value=7.3e-26 Score=211.28 Aligned_cols=103 Identities=34% Similarity=0.687 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhccc
Q psy14234 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~y 452 (779)
+++.|..||..|+.+. .+|||..|||... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 14 ~~~~~~~il~~l~~~~---~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 14 HDAAIQNILTELQNHA---AAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp THHHHHHHHHHHHHST---TCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---CchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999999864 5899999999864 8999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCCc
Q psy14234 453 NPPDHNVVTMARQLSAVFEDRFAKMPDE 480 (779)
Q Consensus 453 N~~~s~v~~~A~~Lq~~Fe~~~~~i~~~ 480 (779)
|+++|.|+.+|..|+++|+++|.++|..
T Consensus 89 N~~~s~i~~~A~~L~~~f~~~~~~~p~~ 116 (121)
T 1e6i_A 89 NGENTSYYKYANRLEKFFNNKVKEIPEY 116 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999754
No 22
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.93 E-value=8.2e-26 Score=222.06 Aligned_cols=109 Identities=28% Similarity=0.447 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
....+|+.+|..||..|++++.+|||..||++.++++||||.+|++||||+||++||+++.|.++.+|+.||+|||.||+
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
+||+++|.|+.+|..|+++|.+.|.++.-
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~~~ 125 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVMGY 125 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999863
No 23
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.92 E-value=1e-25 Score=209.87 Aligned_cols=107 Identities=33% Similarity=0.621 Sum_probs=100.1
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 369 KTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 369 ~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
...++.+.|..+|..|+... ..+|||..|||+..+++||||++|++||||+||++||++|.|.++++|.+||+|||.|
T Consensus 8 ~~~el~~~l~~~l~~l~~~~--~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQD--PESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCT--TTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 44678899999999998743 4689999999999878999999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 449 CYKYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 449 a~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
|++||+++|.||.+|..|+++|++.|..+
T Consensus 86 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 114 (119)
T 3p1f_A 86 AWLYNRKTSRVYKFCSKLAEVFEQEIDPV 114 (119)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 24
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.92 E-value=1.4e-25 Score=208.85 Aligned_cols=109 Identities=28% Similarity=0.565 Sum_probs=102.3
Q ss_pred CCCChHHHHHHHHHHHHHHHc-CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q psy14234 118 PGRNTNQLQYIVKNVMKAVWK-HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFT 196 (779)
Q Consensus 118 ~~~~~~~l~~~~~~il~~L~~-~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~ 196 (779)
..-...+|+..|..+|..|++ ++.+|||..||++..+++||||.+|++||||+||++||++|.|.++.+|..||+|||.
T Consensus 5 ~~~~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~ 84 (119)
T 3p1f_A 5 KIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFN 84 (119)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 334567899999999999988 7799999999998877899999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy14234 197 NCYVYNKPGEDVVLMAQNLEQLFLTKITGM 226 (779)
Q Consensus 197 Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~ 226 (779)
||++||+++|.|+.+|..|++.|++.|..+
T Consensus 85 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 114 (119)
T 3p1f_A 85 NAWLYNRKTSRVYKFCSKLAEVFEQEIDPV 114 (119)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865
No 25
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.92 E-value=1.2e-25 Score=220.79 Aligned_cols=108 Identities=29% Similarity=0.554 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 369 KTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 369 ~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
....|.+.|..||..|+.+. .+|||..|||+..+++||||+||++||||+||++||++|.|.++.+|+.||+|||.|
T Consensus 18 ~~~~~~~~~~~il~~L~~~~---~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYE---GGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDN 94 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTST---TGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCC---CChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999998765 589999999998888999999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 449 CYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 449 a~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
|++||++++.|+.+|..|+++|++.|.++..
T Consensus 95 a~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~ 125 (166)
T 3fkm_X 95 CSLYNTSNSVVAITGKNIETYFNNQLIVMGY 125 (166)
T ss_dssp HHHSSCTTSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999864
No 26
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=208.58 Aligned_cols=106 Identities=19% Similarity=0.341 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHhccC---CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 372 LWYKYCSEIIAELFHKKH---QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 372 ~~~k~c~~iL~~l~~~k~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
.+++.|..||..|+.+++ +.++|+|..||+... +||||++|++||||+||++||++|.|.++++|..||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999998764 468999999999765 899999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 449 CYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 449 a~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
|++||+++|.||.+|..|+++|++.|.++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998743
No 27
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.92 E-value=1.8e-25 Score=208.56 Aligned_cols=102 Identities=33% Similarity=0.631 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCC
Q psy14234 126 QYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPG 205 (779)
Q Consensus 126 ~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~ 205 (779)
...|..||+.|++|+.+|||..||+.. ++||||.+|++||||+||++||++|.|.++.+|..||+|||.||++||+++
T Consensus 15 ~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 15 DAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp HHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 346888999999999999999999975 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCc
Q psy14234 206 EDVVLMAQNLEQLFLTKITGMPSE 229 (779)
Q Consensus 206 s~i~~~A~~Le~~f~~~~~~~~~~ 229 (779)
|.|+.+|..|++.|.++|.++|.-
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p~~ 116 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIPEY 116 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999998643
No 28
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=212.75 Aligned_cols=107 Identities=33% Similarity=0.673 Sum_probs=99.1
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHhh
Q psy14234 369 KTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRN--RTYKTAKEFADDVRLIF 446 (779)
Q Consensus 369 ~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~--~~Y~s~~eF~~Dv~Lmf 446 (779)
-.+.+++.|..||..|+.+. .+|+|+.||+. ++||||+||++||||+||++||++ +.|.++++|.+||+|||
T Consensus 17 m~p~~~~~c~~il~~L~~~~---~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif 90 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHE---MSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 90 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSG---GGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCc---cchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35678899999999998765 69999999997 489999999999999999999998 59999999999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 447 SNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 447 ~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
.||++||+++|.||.+|..|+++|+++|.++..+.
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 91 QNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999886554
No 29
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=208.42 Aligned_cols=104 Identities=23% Similarity=0.343 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
...|+..|..||+.|++|+.+|+|..||++. ++||||.+|++||||+||++||+++.|.++.+|..||+|||.||++|
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKY 82 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
|+++|.+|.+|..|++.|...|.++.
T Consensus 83 N~~~s~~~~~A~~L~~~~~~~l~~~~ 108 (121)
T 2d9e_A 83 NAKDTIFYRAAVRLREQGGAVLRQAR 108 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 30
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.92 E-value=2.2e-25 Score=206.61 Aligned_cols=100 Identities=31% Similarity=0.603 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhcc
Q psy14234 372 LWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYK 451 (779)
Q Consensus 372 ~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~ 451 (779)
.+.+.|..||..|+.++. +|||..|||+.. +||||++|++||||+||++||++|.|.++++|.+||+|||.||+.
T Consensus 16 ~~~~~~~~il~~l~~~~~---s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 90 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKD---SWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRK 90 (116)
T ss_dssp CHHHHHHHHHHHHHHSTT---CGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---cHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999998764 899999999885 899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhc
Q psy14234 452 YNPPDHNVVTMARQLSAVFEDRFAK 476 (779)
Q Consensus 452 yN~~~s~v~~~A~~Lq~~Fe~~~~~ 476 (779)
||+++|.|+.+|..|+++|++.|.+
T Consensus 91 yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 91 YNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999975
No 31
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=2.5e-25 Score=207.60 Aligned_cols=104 Identities=28% Similarity=0.413 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
..+...|..||..|+.+. .+|+|..|||+.. +||||+||++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 6 ~pl~~~l~~il~~l~~~~---~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKD---TGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCL 80 (121)
T ss_dssp CHHHHHHHHHHHHHHHHC---SSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCC---ccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 356789999999999875 5899999999875 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
+||+++|.+|.+|..|++.|+..|.++..
T Consensus 81 ~yN~~~s~~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 81 KYNAKDTIFYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987653
No 32
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.92 E-value=4.1e-25 Score=204.76 Aligned_cols=106 Identities=27% Similarity=0.383 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
.....|+.+|..||+.|++++.+++|..||++. .+||||.+|++||||+||++||++|.|.++.+|..||+|||.||+
T Consensus 4 ~~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~ 81 (117)
T 2i7k_A 4 VEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAM 81 (117)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999964 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
+||+++|.|+.+|..|++.|.+.+..+.
T Consensus 82 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 82 IYNKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp HTSCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753
No 33
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.92 E-value=1.8e-25 Score=209.59 Aligned_cols=109 Identities=25% Similarity=0.362 Sum_probs=100.6
Q ss_pred CCCChHHHHHHHHHHHHHHHc------CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHH
Q psy14234 118 PGRNTNQLQYIVKNVMKAVWK------HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDF 191 (779)
Q Consensus 118 ~~~~~~~l~~~~~~il~~L~~------~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~ 191 (779)
..+....|+..|..||+.|++ |+.+++|..||+.. ++||||.+|++||||+||++||+++.|.++.+|+.||
T Consensus 9 ~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~ 86 (124)
T 3mb4_A 9 KSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDF 86 (124)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344566788999999999998 56679999999965 8999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14234 192 TTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 192 ~lmf~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
+|||.||++||+++|.|+.+|..|+++|.+.|+++..
T Consensus 87 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 87 VMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998754
No 34
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.92 E-value=3.8e-25 Score=205.02 Aligned_cols=106 Identities=24% Similarity=0.324 Sum_probs=98.0
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 369 KTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 369 ~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
.+..+.+.|..||..|+.+. .+|+|..|||... +||||+||++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 5 ~~~~l~~~l~~il~~L~~~~---~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKD---PSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTN 79 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSS---GGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCc---ccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45677899999999998764 5899999999754 899999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 449 CYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 449 a~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
|++||+++|.++.+|..|++.|++.|.....
T Consensus 80 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 80 AMIYNKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp HHHTSCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543
No 35
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.92 E-value=2.3e-25 Score=211.92 Aligned_cols=106 Identities=37% Similarity=0.691 Sum_probs=99.1
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 370 TPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 370 ~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
+..|.+.|..||..|+.++. +|||+.|||... +||||+||++||||+||++||++|.|.++++|.+||+|||.||
T Consensus 19 ~~~l~~~~~~il~~l~~~~~---s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 93 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCED---SEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNS 93 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGG---GGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC---ChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999864 899999999854 8999999999999999999999999999999999999999999
Q ss_pred cccCCC-CChHHHHHHHHHHHHHHHHhcCCCc
Q psy14234 450 YKYNPP-DHNVVTMARQLSAVFEDRFAKMPDE 480 (779)
Q Consensus 450 ~~yN~~-~s~v~~~A~~Lq~~Fe~~~~~i~~~ 480 (779)
+.||++ +|.||.+|..|+++|+++|..+..+
T Consensus 94 ~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 94 KAYTPSKRSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp HHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 9999999999999999999987544
No 36
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=207.88 Aligned_cols=106 Identities=39% Similarity=0.729 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
..|.+.|..||..|+.++ .+|||..||+... +||||++|++||||+||++||++|.|.++++|..||+|||.||+
T Consensus 9 ~~~~~~c~~il~~l~~~~---~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 83 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCE---DSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAK 83 (123)
T ss_dssp -CHHHHHHHHHHHHHTSG---GGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC---CcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 358899999999999876 4899999999875 89999999999999999999999999999999999999999999
Q ss_pred ccCCC-CChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 451 KYNPP-DHNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 451 ~yN~~-~s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
.||++ +|.||.+|..|+++|+++|.++..+.
T Consensus 84 ~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 84 AYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HHSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 99999999999999999999986554
No 37
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.92 E-value=3e-25 Score=206.87 Aligned_cols=108 Identities=22% Similarity=0.400 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHHHHHhccC---CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q psy14234 370 TPLWYKYCSEIIAELFHKKH---QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446 (779)
Q Consensus 370 ~~~~~k~c~~iL~~l~~~k~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf 446 (779)
...+.+.|..||..|+..++ +.++++|..||+... +||||+||++||||+||++||++|.|.++.+|..||+|||
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 45678889999999987654 457999999998765 8999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14234 447 SNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPD 479 (779)
Q Consensus 447 ~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~ 479 (779)
.||+.||+++|.||.+|..|+++|+++|++++.
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998753
No 38
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=208.71 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q psy14234 371 PLWYKYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFS 447 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~ 447 (779)
..+.+.|..|+..|..++ ++.++|||..||+... +||||++|++||||+||++||++|.|.++++|.+||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456788899999998865 3568999999999875 89999999999999999999999999999999999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 448 NCYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 448 Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
||++||+++|.||.+|..|+++|++.|.++.
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 116 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEAS 116 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754
No 39
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.92 E-value=5.2e-25 Score=204.11 Aligned_cols=100 Identities=33% Similarity=0.620 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCC
Q psy14234 124 QLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNK 203 (779)
Q Consensus 124 ~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~ 203 (779)
++...|..||+.|++|+.+|||..||++. .+||||.+|++||||+||++||++|.|.++.+|+.||+|||.||++||+
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 93 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35667889999999999999999999976 7999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhC
Q psy14234 204 PGEDVVLMAQNLEQLFLTKITG 225 (779)
Q Consensus 204 ~~s~i~~~A~~Le~~f~~~~~~ 225 (779)
++|.|+.+|..|++.|.+.|.+
T Consensus 94 ~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 94 ESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999875
No 40
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.92 E-value=4.6e-25 Score=209.69 Aligned_cols=108 Identities=31% Similarity=0.546 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhc--CCCCCHHHHHHHHHHHhhh
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLEN--NYYWSGKEAIQDFTTMFTN 197 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~--~~Y~s~~ef~~D~~lmf~N 197 (779)
+++...+..|..||..|++|+.+|+|..||+. ++||||.+|++||||+||++||++ +.|.++.+|+.||+|||.|
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~N 92 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 92 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHH
Confidence 56677778899999999999999999999985 699999999999999999999998 5899999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 198 CYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 198 a~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
|++||+++|.|+.+|..|+++|.+.|.++.++.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 93 CAEFNEPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999987654
No 41
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=3.5e-25 Score=207.30 Aligned_cols=107 Identities=27% Similarity=0.516 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhh
Q psy14234 121 NTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200 (779)
Q Consensus 121 ~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~ 200 (779)
....|+..|..||+.|++|+.+++|..||++. .+||||.+|++||||+||++||++|.|.++.+|+.||+|||.||++
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 84 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKA 84 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999976 7999999999999999999999999999999999999999999999
Q ss_pred hCCC-CCHHHHHHHHHHHHHHHHHhCCCCc
Q psy14234 201 YNKP-GEDVVLMAQNLEQLFLTKITGMPSE 229 (779)
Q Consensus 201 yN~~-~s~i~~~A~~Le~~f~~~~~~~~~~ 229 (779)
||++ +|.|+.+|..|+++|.++|.++..+
T Consensus 85 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 85 YTPNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp HSCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 9999999999999999999987654
No 42
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.91 E-value=3.8e-25 Score=210.42 Aligned_cols=107 Identities=25% Similarity=0.485 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
...|+..|..||+.|++|+.+|+|..||+.. ++||||.+|++||||+||++||++|.|.++.+|+.||+|||.||++|
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999974 89999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 202 NKP-GEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 202 N~~-~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
|++ +|.||.+|..|+++|.+.|..+.++.
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 99999999999999999999875543
No 43
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.7e-25 Score=211.16 Aligned_cols=111 Identities=25% Similarity=0.425 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHHHHHHhcc---CCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy14234 368 SKTPLWYKYCSEIIAELFHKK---HQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRL 444 (779)
Q Consensus 368 ~~~~~~~k~c~~iL~~l~~~k---~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~L 444 (779)
.....+..+|..|+..|...+ ++.++|||+.||+... +||||++|++||||+||++||+++.|.++++|..||+|
T Consensus 13 ~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~L 90 (130)
T 3k2j_A 13 LGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNL 90 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 445667788888888887654 3568999999999765 89999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCc
Q psy14234 445 IFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480 (779)
Q Consensus 445 mf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~ 480 (779)
||.||++||+++|.|+.+|..|+++|+++|.++...
T Consensus 91 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 91 MFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999987543
No 44
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.91 E-value=3.9e-25 Score=208.64 Aligned_cols=108 Identities=24% Similarity=0.335 Sum_probs=100.6
Q ss_pred ChHHHHHHHHHHHHHHHcCC-------CCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHH
Q psy14234 121 NTNQLQYIVKNVMKAVWKHP-------HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTT 193 (779)
Q Consensus 121 ~~~~l~~~~~~il~~L~~~~-------~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~l 193 (779)
....|+..|..||+.|+++. .+++|..||+.. .+||||.+|++||||+||++||++|.|.++.+|+.||+|
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 45678889999999999875 589999999954 899999999999999999999999999999999999999
Q ss_pred HhhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 194 MFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 194 mf~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
||.||++||+++|.||.+|..|+++|.+.|.+++..+
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 122 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKED 122 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999887554
No 45
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=204.00 Aligned_cols=101 Identities=25% Similarity=0.392 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
..++.+|..||+.|++++.+++|..||++. .+||||.+|++||||+||++||++|.|.++.+|+.||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357889999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhC
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKITG 225 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~~~ 225 (779)
+++|.|+.+|..|++.|.+.|.+
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 46
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.91 E-value=3.7e-25 Score=206.29 Aligned_cols=108 Identities=26% Similarity=0.450 Sum_probs=101.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy14234 121 NTNQLQYIVKNVMKAVWKHPH------AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTM 194 (779)
Q Consensus 121 ~~~~l~~~~~~il~~L~~~~~------s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lm 194 (779)
.+..|+..|..|++.|.++.. +++|..||+.. ++||||.+|++||||+||++||++|.|.++.+|+.||+||
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 82 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLL 82 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 467899999999999998777 99999999964 8999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 195 FTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 195 f~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
|.||++||+++|.|+.+|..|+++|.+.|++++..+
T Consensus 83 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~~ 118 (120)
T 3ljw_A 83 AKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHE 118 (120)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999876543
No 47
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=205.11 Aligned_cols=103 Identities=27% Similarity=0.390 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 123 ~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
..|+.+|..||+.|++|+.+|+|..||+.. .+||||.+|++||||+||++||++|.|.++.+|+.||+|||.||++||
T Consensus 12 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (135)
T 3rcw_A 12 TPLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYN 89 (135)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 358899999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
+++|.||.+|..|++.|.+.|.++.
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (135)
T 3rcw_A 90 ARDTVFYRAAVRLRDQGGVVLRQAR 114 (135)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753
No 48
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=202.59 Aligned_cols=102 Identities=27% Similarity=0.383 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 370 TPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 370 ~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
...+...|..||..|+.+. .+|+|..|||... +||||++|++||||+||++||++|.|.++++|.+||+|||.||
T Consensus 11 ~~p~~~~l~~il~~l~~~~---~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 85 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKD---PHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNA 85 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTC---TTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCC---ccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence 3457889999999998865 4899999999875 8999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhc
Q psy14234 450 YKYNPPDHNVVTMARQLSAVFEDRFAK 476 (779)
Q Consensus 450 ~~yN~~~s~v~~~A~~Lq~~Fe~~~~~ 476 (779)
+.||+++|.||.+|..|++.|++.|.+
T Consensus 86 ~~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 86 MTYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 49
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=203.69 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPH------AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMF 195 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~------s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf 195 (779)
+..|+..|..|++.|+++.. +|||..||+.. ++||||.+|++||||+||++||++|.|.++.+|..||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788899999999998754 99999999976 89999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 196 TNCYVYNKPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 196 ~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
.||++||+++|.|+.+|..|+++|.+.+.++.
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 116 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEAS 116 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 50
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=204.72 Aligned_cols=104 Identities=31% Similarity=0.477 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 369 KTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 369 ~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
.+..+...|..||..|+.++ .+|+|..|||... +||||++|++||||+||++||++|.|.++++|.+||+|||.|
T Consensus 10 ~~~~l~~~l~~il~~l~~~~---~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (135)
T 3rcw_A 10 RLTPLTVLLRSVLDQLQDKD---PARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDN 84 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTC---TTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCC---cchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 45568899999999999875 4899999999875 899999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 449 CYKYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 449 a~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
|+.||+++|.+|.+|..|+++|+..|...
T Consensus 85 a~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 85 CMKYNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 51
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.91 E-value=3.5e-24 Score=208.63 Aligned_cols=108 Identities=29% Similarity=0.507 Sum_probs=98.7
Q ss_pred CcHHHHHHHHHHHHHHHhc--cCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q psy14234 369 KTPLWYKYCSEIIAELFHK--KHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIF 446 (779)
Q Consensus 369 ~~~~~~k~c~~iL~~l~~~--k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf 446 (779)
.+......|..||..++.. ..+..+|||+.||+... +||||+||++||||+||++||++|.|.++.+|..||+|||
T Consensus 22 ~~~d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 99 (158)
T 3uv4_A 22 SMDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 99 (158)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3556778888999888764 33567999999999875 8999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 447 SNCYKYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 447 ~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
.||++||++++.|+.+|..|+.+|+..|.++.
T Consensus 100 ~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 100 ANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 52
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.90 E-value=4.5e-25 Score=194.48 Aligned_cols=82 Identities=80% Similarity=1.228 Sum_probs=78.1
Q ss_pred ccCCCcccccCCCCCHHHHHHHHHHccCCCCcchHHHHHHHhhcCCCCCCCCCCcEEEeCCCCChHHHHHHHHHHHHHHh
Q psy14234 608 RTFDSEDEDVAKPMSYDEKRQLSLDINKLPGDKLGKVVHIIQSREPSLREPNPDEIEIDFETLKPSTLRELEQYVSSCLR 687 (779)
Q Consensus 608 ~~~~s~~e~~~~pmt~dEK~qLs~~In~LpgekL~~Vv~IIq~~ep~l~~~n~dEIEiD~etL~~~TLreLe~yV~~cL~ 687 (779)
+.+|+++|+.+++|||+||++|+.+|++||+++|++||+||++++|++...++||||||||+|++.|||+|++||.+||+
T Consensus 5 ~~~d~~~e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~ 84 (90)
T 2jns_A 5 SSGESEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLR 84 (90)
T ss_dssp CCCCTTTTSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999999999999999999999999987788999999999999999999999999998
Q ss_pred hh
Q psy14234 688 KR 689 (779)
Q Consensus 688 kk 689 (779)
+|
T Consensus 85 ~k 86 (90)
T 2jns_A 85 KK 86 (90)
T ss_dssp CC
T ss_pred hh
Confidence 86
No 53
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.90 E-value=1.8e-24 Score=200.52 Aligned_cols=103 Identities=23% Similarity=0.303 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q psy14234 124 QLQYIVKNVMKAVWKHP------HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTN 197 (779)
Q Consensus 124 ~l~~~~~~il~~L~~~~------~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~N 197 (779)
.....|..|++.|+++. .+++|..||+.. ++||||.+|++||||+||++||+++.|.++.+|..||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRR--NQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGG--GCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcc--cCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 34567889999999874 599999999954 8999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14234 198 CYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 198 a~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
|++||+++|.|+.+|..|+++|.+.+.++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988643
No 54
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=200.56 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPH------AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMF 195 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~------s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf 195 (779)
...|...|..|++.|.++.. +|||..||+.. .+||||.+|++||||+||++||+++.|.++.+|+.||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 45667777888888887544 99999999964 89999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Q psy14234 196 TNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSE 229 (779)
Q Consensus 196 ~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~ 229 (779)
.||++||+++|.|+.+|..|+++|.+.|.++...
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999987543
No 55
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.90 E-value=6.3e-24 Score=206.81 Aligned_cols=106 Identities=30% Similarity=0.576 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHH-HHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhh
Q psy14234 122 TNQLQYIVKNVMKA-VWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYV 200 (779)
Q Consensus 122 ~~~l~~~~~~il~~-L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~ 200 (779)
..+|..+|..|+.. |+.++.+|||..||+.. .+||||.+|++||||+||++||+++.|.++.+|+.||+|||.||++
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677788887765 78899999999999975 7999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Q psy14234 201 YNKPGEDVVLMAQNLEQLFLTKITGMPSE 229 (779)
Q Consensus 201 yN~~~s~i~~~A~~Le~~f~~~~~~~~~~ 229 (779)
||+++|.|+.+|..|++.|.+.|.++...
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~ 133 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEH 133 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998654
No 56
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.89 E-value=8.4e-24 Score=204.73 Aligned_cols=107 Identities=20% Similarity=0.369 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhccC----CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 373 WYKYCSEIIAELFHKKH----QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~----~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
....|..||..|+...+ +.++++|+.||+... +||||+||++||||+||++||++|.|.++++|.+||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35678888888887553 567999999999765 899999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 449 CYKYNPPDHNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 449 a~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
|++||+++|.||.+|..|+++|+++|.++...+
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~p 135 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELGPLP 135 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999987544
No 57
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.89 E-value=1.5e-23 Score=207.99 Aligned_cols=106 Identities=37% Similarity=0.631 Sum_probs=100.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhh
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCY 199 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~ 199 (779)
.++...+..|..||+.|++|+.++||..||++. .+||||.+|++||||+||++||++|.|.++.+|+.||+|||.||+
T Consensus 68 ~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 145 (174)
T 2ri7_A 68 PLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCR 145 (174)
T ss_dssp BCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 355667778899999999999999999999976 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 200 VYNKPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 200 ~yN~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
+||+++|.|+.+|..|+++|.++|++++
T Consensus 146 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 146 YYNPSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999875
No 58
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.89 E-value=1.6e-23 Score=207.83 Aligned_cols=103 Identities=34% Similarity=0.646 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
..+++.|..||..|+.++ .+|||+.|||+.. +||||+||++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 71 ~~~~~~l~~il~~l~~~~---~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 145 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHK---MAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCR 145 (174)
T ss_dssp HHHHHHHHHHHHHHHTSG---GGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---hhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 467889999999998865 5899999999874 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhcCC
Q psy14234 451 KYNPPDHNVVTMARQLSAVFEDRFAKMP 478 (779)
Q Consensus 451 ~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~ 478 (779)
+||+++|.||.+|..|+++|+++|++++
T Consensus 146 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 146 YYNPSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999875
No 59
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.89 E-value=4e-23 Score=195.16 Aligned_cols=101 Identities=26% Similarity=0.385 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
..+|+.+|..|++.|+.|+.+|||..||++. .+||||.+|++||||+||++||++|.|.++.+|+.||+|||.||++|
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHh
Q psy14234 202 NKPGEDV----VLMAQNLEQLFLTKIT 224 (779)
Q Consensus 202 N~~~s~i----~~~A~~Le~~f~~~~~ 224 (779)
|+++|++ +.+|..|+..+...+.
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999865 7899999999999886
No 60
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.88 E-value=1.7e-23 Score=202.56 Aligned_cols=103 Identities=28% Similarity=0.366 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCC-------CCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhh
Q psy14234 124 QLQYIVKNVMKAVWKHP-------HAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFT 196 (779)
Q Consensus 124 ~l~~~~~~il~~L~~~~-------~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~ 196 (779)
..+..|..|++.|+++. .+++|..||+.. ++||||.+|++||||+||++||++|.|.++.+|+.||+|||.
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 101 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK--DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFR 101 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchh--hCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34556666777776644 499999999964 899999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14234 197 NCYVYNKPGEDVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 197 Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
||++||+++|.||.+|..|+++|.+.|.++..
T Consensus 102 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 102 NARHYNEEGSQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999764
No 61
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.87 E-value=5.4e-23 Score=206.23 Aligned_cols=104 Identities=22% Similarity=0.404 Sum_probs=95.5
Q ss_pred CCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhc--CCCCHHHHHHHHhcC---CCCCHHHHHHHH
Q psy14234 368 SKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIK--KPMDLGTVRKKMRNR---TYKTAKEFADDV 442 (779)
Q Consensus 368 ~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk--~PMDL~tIk~KL~~~---~Y~s~~eF~~Dv 442 (779)
+..+..+++|..||..|+.+. .+|||++||| ++||+||+ +||||+||++||+++ .|.++++|++||
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~---~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv 142 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHE---PCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDV 142 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHST---THHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCc---cchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHH
Confidence 345677899999999999865 5999999998 67999998 899999999999999 999999999999
Q ss_pred HHhhhhhcccCCCCChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 443 RLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 443 ~Lmf~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
+|||.||++|| +++.||.+|..|+++|+++|+++..+.
T Consensus 143 ~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 143 GRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999 589999999999999999999987654
No 62
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.87 E-value=1.1e-22 Score=203.56 Aligned_cols=104 Identities=33% Similarity=0.696 Sum_probs=96.9
Q ss_pred CCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHh
Q psy14234 368 SKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRN--RTYKTAKEFADDVRLI 445 (779)
Q Consensus 368 ~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~--~~Y~s~~eF~~Dv~Lm 445 (779)
...+.+.+.|..||..|+.++ .+|+|..||+.. +|+||+||++||||+||++||++ +.|.++++|.+||+||
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~---~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li 150 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHE---MSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLI 150 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHST---TCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhch---hhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 345778999999999999876 489999999853 79999999999999999999998 7999999999999999
Q ss_pred hhhhcccCCCCChHHHHHHHHHHHHHHHHhcC
Q psy14234 446 FSNCYKYNPPDHNVVTMARQLSAVFEDRFAKM 477 (779)
Q Consensus 446 f~Na~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i 477 (779)
|.||++||++++.|+.+|..|+.+|+++|.++
T Consensus 151 ~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 151 FQNCAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875
No 63
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.87 E-value=1.2e-22 Score=203.25 Aligned_cols=105 Identities=30% Similarity=0.545 Sum_probs=99.7
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhc--CCCCCHHHHHHHHHHHhhh
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLEN--NYYWSGKEAIQDFTTMFTN 197 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~--~~Y~s~~ef~~D~~lmf~N 197 (779)
.++..++..|..||..|+.|+.+++|..||+. ++||||.+|++||||+||++||++ +.|.++.+|+.||+|||.|
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999984 599999999999999999999998 7899999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy14234 198 CYVYNKPGEDVVLMAQNLEQLFLTKITGMP 227 (779)
Q Consensus 198 a~~yN~~~s~i~~~A~~Le~~f~~~~~~~~ 227 (779)
|++||+++|.|+.+|..|+++|++.|+++.
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998764
No 64
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.87 E-value=2e-22 Score=190.39 Aligned_cols=100 Identities=29% Similarity=0.391 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhc
Q psy14234 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCY 450 (779)
Q Consensus 371 ~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~ 450 (779)
..+...|..+|..|..++ .+|||..|||... +||||++|++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 9 ~~l~~~l~~il~~l~~~~---~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 83 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDK---RFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNAL 83 (130)
T ss_dssp HHHHHHHHHHHHHHHTSG---GGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC---ccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 345677888888887765 4899999999885 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCChH----HHHHHHHHHHHHHHHh
Q psy14234 451 KYNPPDHNV----VTMARQLSAVFEDRFA 475 (779)
Q Consensus 451 ~yN~~~s~v----~~~A~~Lq~~Fe~~~~ 475 (779)
.||++++.+ +.+|..|++.|...+.
T Consensus 84 ~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 84 EYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999998866 7888999999988886
No 65
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=189.58 Aligned_cols=102 Identities=24% Similarity=0.427 Sum_probs=94.4
Q ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhh
Q psy14234 119 GRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNC 198 (779)
Q Consensus 119 ~~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na 198 (779)
.....+|+.+|..||+.|+.|+.+|||..| +||||.+|++||||+||++||+++.|.++.+|..||+|||.||
T Consensus 7 ~~~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na 79 (131)
T 2dkw_A 7 GNTLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNA 79 (131)
T ss_dssp THHHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999998 7999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCH----HHHHHHHHHHHHHHHHh-CCC
Q psy14234 199 YVYNKPGED----VVLMAQNLEQLFLTKIT-GMP 227 (779)
Q Consensus 199 ~~yN~~~s~----i~~~A~~Le~~f~~~~~-~~~ 227 (779)
++||+++|+ |+.+|..|++.|...|+ ++.
T Consensus 80 ~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 80 LEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999995 67999999999999884 443
No 66
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.86 E-value=2.3e-22 Score=201.65 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=96.2
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcC--CCCCHHHHHHHhhcC---CCCCHHHHHHHHHHH
Q psy14234 120 RNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVIT--QPMDLGTIKKRLENN---YYWSGKEAIQDFTTM 194 (779)
Q Consensus 120 ~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk--~PmDL~tIk~kL~~~---~Y~s~~ef~~D~~lm 194 (779)
.++...+..|..||..|+.|+.+|||+.||+ |+||.+|+ +||||+||++||+++ .|.++.+|+.||+||
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Li 145 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHH
Confidence 4555666789999999999999999999998 57999998 899999999999999 999999999999999
Q ss_pred hhhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 195 FTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 195 f~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
|+||++|| +++.|+.+|..|+++|+++|++++.+.
T Consensus 146 f~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 146 FKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999 589999999999999999999987754
No 67
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=186.35 Aligned_cols=97 Identities=32% Similarity=0.467 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 370 TPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 370 ~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
+.++...|..||..|+.++ .+|||..| +||||+||++||||+||++||++|.|.++.+|.+||+|||.||
T Consensus 10 ~~~L~~~~~~il~~l~~~~---~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na 79 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDK---RFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNA 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSG---GGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc---cchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4567778999999999875 58999998 6999999999999999999999999999999999999999999
Q ss_pred cccCCCCCh----HHHHHHHHHHHHHHHHhc
Q psy14234 450 YKYNPPDHN----VVTMARQLSAVFEDRFAK 476 (779)
Q Consensus 450 ~~yN~~~s~----v~~~A~~Lq~~Fe~~~~~ 476 (779)
+.||+++|. |+.+|..|++.|...++.
T Consensus 80 ~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 80 LEYNPDKDPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp HHSCCCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 578999999999998853
No 68
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.85 E-value=9.4e-22 Score=200.33 Aligned_cols=107 Identities=33% Similarity=0.696 Sum_probs=98.5
Q ss_pred CCcHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhc---CCCCCHHHHHHHHHH
Q psy14234 368 SKTPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRN---RTYKTAKEFADDVRL 444 (779)
Q Consensus 368 ~~~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~---~~Y~s~~eF~~Dv~L 444 (779)
+-.+.+++.|..||..|+.++ .+|+|+.||+. ++|+||+||++||||+||++||++ |.|.++.+|.+||+|
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~---~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~l 150 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHE---LSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRL 150 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTST---TCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcc---chhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHH
Confidence 345678999999999999875 58999999986 489999999999999999999997 799999999999999
Q ss_pred hhhhhcccCC-----------------CCChHHHHHHHHHHHHHHHHhcCCCc
Q psy14234 445 IFSNCYKYNP-----------------PDHNVVTMARQLSAVFEDRFAKMPDE 480 (779)
Q Consensus 445 mf~Na~~yN~-----------------~~s~v~~~A~~Lq~~Fe~~~~~i~~~ 480 (779)
||.||++||+ +++.|+.+|..|+.+|+.+|.++..+
T Consensus 151 i~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 151 IFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 99999999999999999999987543
No 69
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.85 E-value=1.1e-21 Score=199.86 Aligned_cols=109 Identities=28% Similarity=0.473 Sum_probs=102.1
Q ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhc---CCCCCHHHHHHHHHHHh
Q psy14234 119 GRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLEN---NYYWSGKEAIQDFTTMF 195 (779)
Q Consensus 119 ~~~~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~---~~Y~s~~ef~~D~~lmf 195 (779)
..++...+..|..||..|++|+.+++|+.||+. ++||||.+|++||||+||++||++ +.|.++.+|+.||+|||
T Consensus 76 ~~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~ 152 (207)
T 3u5n_A 76 QGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIF 152 (207)
T ss_dssp CSSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHH
Confidence 346678888999999999999999999999985 699999999999999999999997 79999999999999999
Q ss_pred hhhhhhCC-----------------CCCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 196 TNCYVYNK-----------------PGEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 196 ~Na~~yN~-----------------~~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
.||++||+ +++.|+.+|..|+.+|..+|.++.++.
T Consensus 153 ~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 153 KNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999 999999999999999999999987653
No 70
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.85 E-value=1.7e-21 Score=205.69 Aligned_cols=106 Identities=28% Similarity=0.584 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhh
Q psy14234 370 TPLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNC 449 (779)
Q Consensus 370 ~~~~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na 449 (779)
...+...|..||..|+.+. .+|||..||+... +||||+||++||||+||++||++|.|.++.+|..||+|||.||
T Consensus 12 ~~~l~~~l~~il~~l~~~~---~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLP---NTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNS 86 (265)
T ss_dssp HHHHHHHHHHHHHHHHTST---TCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---CchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhh
Confidence 3478899999999998875 4899999999886 8999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhcCCCc
Q psy14234 450 YKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480 (779)
Q Consensus 450 ~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~ 480 (779)
++||+++|.|+.+|..|+.+|+..|.++.+.
T Consensus 87 ~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~ 117 (265)
T 3uv5_A 87 ATYNGPKHSLTQISQSMLDLCDEKLKEKEDK 117 (265)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999987543
No 71
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=201.35 Aligned_cols=103 Identities=31% Similarity=0.598 Sum_probs=93.3
Q ss_pred HHHHHHHHHHH-HHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhC
Q psy14234 124 QLQYIVKNVMK-AVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYN 202 (779)
Q Consensus 124 ~l~~~~~~il~-~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN 202 (779)
.+..+|..++. .|+.++.+|||..||+.. .+||||.+|++||||+||++||++|.|.++.+|..||+|||.||++||
T Consensus 169 ~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN 246 (292)
T 3aad_A 169 AFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 246 (292)
T ss_dssp HHHHHHHHHHHHTGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35556666554 478899999999999965 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCC
Q psy14234 203 KPGEDVVLMAQNLEQLFLTKITGMPS 228 (779)
Q Consensus 203 ~~~s~i~~~A~~Le~~f~~~~~~~~~ 228 (779)
+++|.||.+|..|++.|.+.|.++..
T Consensus 247 ~~~s~i~~~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 247 GPESQYTKTAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 72
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.81 E-value=2.8e-20 Score=200.13 Aligned_cols=87 Identities=30% Similarity=0.406 Sum_probs=83.6
Q ss_pred cCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCHHHHHHHHHHH
Q psy14234 138 KHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQ 217 (779)
Q Consensus 138 ~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i~~~A~~Le~ 217 (779)
.|+.+|||+.||+.. .+||||.||++||||+||++||++|.|.++.+|+.||+|||.||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367899999999975 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q psy14234 218 LFLTKITGM 226 (779)
Q Consensus 218 ~f~~~~~~~ 226 (779)
+|.+.|++.
T Consensus 255 ~f~~~~~~~ 263 (311)
T 2r0y_A 255 YFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999884
No 73
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.80 E-value=4.1e-20 Score=202.99 Aligned_cols=86 Identities=29% Similarity=0.399 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhhCCCCCHHHHHHHHHHHH
Q psy14234 139 HPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQL 218 (779)
Q Consensus 139 ~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~yN~~~s~i~~~A~~Le~~ 218 (779)
|..+|||+.||+.. ++||||.||++||||+||++||+++.|.++.+|+.||+|||.||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 67899999999975 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q psy14234 219 FLTKITGM 226 (779)
Q Consensus 219 f~~~~~~~ 226 (779)
|...|.+.
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
No 74
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.73 E-value=6e-18 Score=160.40 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHHcCCC------CCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPH------AWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMF 195 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~------s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf 195 (779)
...++.++..|++.|+.+.. +.+|...++.. |+||. ++||+|.+|++||+.|.|+++++|..||.+||
T Consensus 5 ~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 5 TLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34688899999999998754 78899988743 89998 99999999999999999999999999999999
Q ss_pred hhhhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCcc
Q psy14234 196 TNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEE 230 (779)
Q Consensus 196 ~Na~~yN~~~s~i~~~A~~Le~~f~~~~~~~~~~e 230 (779)
.||++||.+||.||.+|..|+++|.+.+.++....
T Consensus 79 ~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g 113 (147)
T 3iu6_A 79 ERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNG 113 (147)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999876543
No 75
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=157.27 Aligned_cols=104 Identities=14% Similarity=0.284 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHhccC---CCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q psy14234 372 LWYKYCSEIIAELFHKKH---QNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSN 448 (779)
Q Consensus 372 ~~~k~c~~iL~~l~~~k~---~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~N 448 (779)
.....+..|+..++.+++ +.++.+|+..++.. |+||+ ++||+|.+|++||+.|.|+++++|..||.|||.|
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 456677888888888764 56889999987765 68998 9999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHHhcCCCch
Q psy14234 449 CYKYNPPDHNVVTMARQLSAVFEDRFAKMPDES 481 (779)
Q Consensus 449 a~~yN~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~ 481 (779)
|++||.+||.||.+|..||.+|...+.++....
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g 113 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELCKNG 113 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999987654
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.45 E-value=5.8e-14 Score=139.15 Aligned_cols=97 Identities=16% Similarity=0.238 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccCCCCchhhcCCCCCHHHHHHHhhcCCCCCHHHHHHHHHHHhhhhhhh
Q psy14234 122 TNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEAIQDFTTMFTNCYVY 201 (779)
Q Consensus 122 ~~~l~~~~~~il~~L~~~~~s~pF~~PVd~~~~~~PdYy~iIk~PmDL~tIk~kL~~~~Y~s~~ef~~D~~lmf~Na~~y 201 (779)
...|+..|..||..|..|+.++||+. | .++.||||.+|++||+.|.|.++.+|+.||.+||.||..|
T Consensus 73 ~~el~~~l~~vl~~L~~~~~s~~~~~-----------y--~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 73 EKELQISLKQVLTALLNSRTTSHLLR-----------Y--RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHT-----------C--CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHhhhh-----------h--hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 45678888999999999999999865 2 2599999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCccc
Q psy14234 202 NKPGEDVVLMAQNLEQLFLTKITGMPSEEV 231 (779)
Q Consensus 202 N~~~s~i~~~A~~Le~~f~~~~~~~~~~e~ 231 (779)
|++++.+..++..|+.+|.+.|+++.+...
T Consensus 140 ~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 140 DGGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred cCCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999877654
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.40 E-value=2.5e-13 Score=134.55 Aligned_cols=94 Identities=15% Similarity=0.245 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhccCCCCccCccccCCccccCCCchhhhhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhccc
Q psy14234 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAKEFADDVRLIFSNCYKY 452 (779)
Q Consensus 373 ~~k~c~~iL~~l~~~k~~~~a~pF~~PVd~~~~~~pdY~~iIk~PMDL~tIk~KL~~~~Y~s~~eF~~Dv~Lmf~Na~~y 452 (779)
+...+..||..|..++ .+|||+.. . ++.||||.+|++||+.|.|.++.+|..||+|||.||.+|
T Consensus 76 l~~~l~~vl~~L~~~~---~s~~~~~y-----------~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 76 LQISLKQVLTALLNSR---TTSHLLRY-----------R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHHHHHHTCH---HHHHHHTC-----------C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccHhhhhh-----------h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3455678888888775 48998763 2 499999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCCchh
Q psy14234 453 NPPDHNVVTMARQLSAVFEDRFAKMPDESN 482 (779)
Q Consensus 453 N~~~s~v~~~A~~Lq~~Fe~~~~~i~~~~~ 482 (779)
|.+++++..++..|+.+|++++.++-....
T Consensus 140 ~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 140 DGGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred cCCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999998765543
No 78
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=93.82 E-value=0.086 Score=47.71 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHccCCCCc-chHHHHHHHhhcCCCCCCCCCCcEEEeCCCCChHHHHHHHHHHH
Q psy14234 622 SYDEKRQLSLDINKLPGD-KLGKVVHIIQSREPSLREPNPDEIEIDFETLKPSTLRELEQYVS 683 (779)
Q Consensus 622 t~dEK~qLs~~In~Lpge-kL~~Vv~IIq~~ep~l~~~n~dEIEiD~etL~~~TLreLe~yV~ 683 (779)
=.+|-+.|...|-.|-.. .|.+||++|.+-. ..........||+..|+..|+|+|+.|+.
T Consensus 60 y~~~L~~l~~rim~l~d~~~lq~iv~li~~tG--~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 60 YLDELVELHRRLMTLRERHILQQIVNLIEETG--HFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp THHHHHHHHHHHHTCCCCSSHHHHHHHHHTSC--CEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhcC--ceeeecccccceeeccCHHHHHHHHHHHH
Confidence 357889999999999876 5999999998732 22444578999999999999999999975
No 79
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.54 E-value=1.2e+02 Score=28.37 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCchhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14234 468 AVFEDRFAKMPDESNLASRAAASVSSDDDSEDERQNQLKYLQEQLKSLTDQIRLLVE 524 (779)
Q Consensus 468 ~~Fe~~~~~i~~~~~~~~~~~s~~~~~~d~eee~~~~l~~lq~ql~~~~~~l~~l~~ 524 (779)
+.++.++..+|.. +-++++-.++|..|++++..+.+++.....
T Consensus 71 kqIe~LIdsLPg~--------------~~seeeQ~~ri~~Le~E~~~~~~el~~~v~ 113 (151)
T 1yke_B 71 RQINKLIDSLPGV--------------DVSAEEQLRKIDMLQKKLVEVEDEKIEAIK 113 (151)
T ss_dssp HHHHHHHHHCTTS--------------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666632 236777788999999999888887765443
No 80
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.68 E-value=1.4e+02 Score=27.24 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCchhhhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14234 468 AVFEDRFAKMPDESNLASRAAASVSSDDDSEDERQNQLKYLQEQLKSLTDQIRLLVE 524 (779)
Q Consensus 468 ~~Fe~~~~~i~~~~~~~~~~~s~~~~~~d~eee~~~~l~~lq~ql~~~~~~l~~l~~ 524 (779)
+.++.++..+|.. +.++++-.++|..|++++..+.+++.....
T Consensus 71 kqIe~LIdsLP~~--------------~~see~Q~~ri~~L~~E~~~~~~el~~~v~ 113 (132)
T 1ykh_B 71 RQINKLIDSLPGV--------------DVSAEEQLRKIDMLQKKLVEVEDEKIEAIK 113 (132)
T ss_dssp HHHHHHHHHSTTT--------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666532 236777788999999999888887765433
No 81
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.53 E-value=1e+02 Score=19.70 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14234 499 DERQNQLKYLQEQLKSLTDQI 519 (779)
Q Consensus 499 ee~~~~l~~lq~ql~~~~~~l 519 (779)
+|-...|..||+.|..+.+.|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777766554
Done!