RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14234
(779 letters)
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 117 bits (295), Expect = 7e-32
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTY 432
I+ EL + AWPF PV+ E++ DY+D IK+PMDL T+ K+ + Y
Sbjct: 4 HDAAIQNILTELQNHAA---AWPFLQPVNKEEV--PDYYDFIKEPMDLSTMEIKLESNKY 58
Query: 433 KTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDESNL 483
+ ++F D RL+F+NC YN + + A +L F ++ ++P+ S+L
Sbjct: 59 QKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHL 109
Score = 110 bits (275), Expect = 3e-29
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 128 IVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKEA 187
++N++ + H AWPF +PV+ +PDY+ I +PMDL T++ +LE+N Y ++
Sbjct: 7 AIQNILTELQNHAAAWPFLQPVNK--EEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDF 64
Query: 188 IQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEEVVLD 234
I D +F NC +YN A LE+ F K+ +P ++D
Sbjct: 65 IYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHLID 111
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 117 bits (294), Expect = 1e-31
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTY 432
+ + L+ + + PF PVD + LG+ DYFDI+K PMDL T+++K+ Y
Sbjct: 7 LRQALMPTLEALY--RQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQY 64
Query: 433 KTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
+ ++ DDV L+F+N + YN V +L+ VFE +
Sbjct: 65 QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 112
Score = 112 bits (281), Expect = 6e-30
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 121 NTNQLQYIVKNVMKAVWKH-PHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENN 179
+L+ + ++A+++ P + PF +PVD L +PDY ++ PMDL TIK++L+
Sbjct: 3 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTG 62
Query: 180 YYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSE 229
Y + + D MF N ++YN+ V L ++F +I +
Sbjct: 63 QYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 112
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 113 bits (285), Expect = 1e-30
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 123 NQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYW 182
+QL +KN++ + HP AWPF EPV PDY++VI P+DL T+ +RL + YY
Sbjct: 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKK--SEAPDYYEVIRFPIDLKTMTERLRSRYYV 58
Query: 183 SGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
+ K + D + NC YN P + A LE+ F K+
Sbjct: 59 TRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKL 99
Score = 105 bits (263), Expect = 1e-27
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTY 432
Y ++A++ AWPF PV K DY+++I+ P+DL T+ +++R+R Y
Sbjct: 3 LYTTLKNLLAQIKSHPS---AWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLRSRYY 57
Query: 433 KTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAK 476
T K F D++ + +NC +YNPPD A L F + +
Sbjct: 58 VTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 101
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 113 bits (284), Expect = 4e-30
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 113 PPKHRPGRNTN---QLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDL 169
P K R T+ L I+++++ + P+ +PFH PV+A + DY+K+IT+PMDL
Sbjct: 12 PHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVV--KDYYKIITRPMDL 69
Query: 170 GTIKKRLENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSE 229
T+++ + Y S +E + + N YN P + ++Q++ L K+ +
Sbjct: 70 QTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK 129
Score = 108 bits (270), Expect = 4e-28
Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 377 CSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTYKTAK 436
II ++ + +PF+TPV+ + + DY+ II +PMDL T+R+ +R R Y + +
Sbjct: 31 LESIINDMRDLPN---TYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKRLYPSRE 85
Query: 437 EFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
EF + + LI N YN P H++ +++ + + +++ + D+
Sbjct: 86 EFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK 129
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 111 bits (280), Expect = 1e-29
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 374 YKYCSEIIAELFHKKHQNY--AWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRT 431
S I+ + +K +WPF+ PV+ K + DY+ +I PMDL T+RK +
Sbjct: 7 QVAFSFILDNIVTQKMMAVPDSWPFHHPVN--KKFVPDYYKVIVNPMDLETIRKNISKHK 64
Query: 432 YKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDE 480
Y++ + F DDV LI +N KYN P+ A+++ V + +
Sbjct: 65 YQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEH 113
Score = 111 bits (279), Expect = 2e-29
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 125 LQYIVKNVM-KAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWS 183
+I+ N++ + + P +WPFH PV+ +PDY+KVI PMDL TI+K + + Y S
Sbjct: 10 FSFILDNIVTQKMMAVPDSWPFHHPVNK--KFVPDYYKVIVNPMDLETIRKNISKHKYQS 67
Query: 184 GKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSE 229
+ + D + N YN P AQ + + +T
Sbjct: 68 RESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEH 113
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 109 bits (274), Expect = 5e-29
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 117 RPGRNTNQLQYIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRL 176
+ R+ +QL +K++++ V H AWPF EPV P Y++VI PMDL T+ +RL
Sbjct: 6 KEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKR--TEAPGYYEVIRFPMDLKTMSERL 63
Query: 177 ENNYYWSGKEAIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKI 223
+N YY S K + D +FTNC YN P + A LE+ F +KI
Sbjct: 64 KNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKI 110
Score = 97.0 bits (241), Expect = 1e-24
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 373 WYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNRTY 432
Y I+ ++ + AWPF PV + Y+++I+ PMDL T+ ++++NR Y
Sbjct: 14 LYSTLKSILQQVKSHQS---AWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNRYY 68
Query: 433 KTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKM 477
+ K F D++ +F+NC +YNPP+ A L F + +
Sbjct: 69 VSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEA 113
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 30.2 bits (67), Expect = 0.62
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 27/128 (21%)
Query: 127 YIVKNVMKAVWKHPHAWPFHEPVDAINLNLPDYHKVITQPMDLGTIKKRLENNYYWSGKE 186
+++ + + + ++ INLN+P T+ KRL+ Y + E
Sbjct: 86 WLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRPETVVKRLKA--YEAQTE 143
Query: 187 AIQDFTTMFTNCYVYNKPGEDVVLMAQNLEQLFLTKITGMPSEEV---VLDAPQPRSSKK 243
+ ++ Y K G L +G + ++ V Q + ++
Sbjct: 144 PVLEY---------YRKKG-------------VLETFSGTETNKIWPHVYAFLQTKLPQR 181
Query: 244 KPPVSASP 251
S +P
Sbjct: 182 SQETSVTP 189
>d1jeyb1 b.131.1.2 (B:242-545) Ku80 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 30.3 bits (68), Expect = 0.82
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 579 VRKPQASNPQQAKKPKPNNANTVAAKKQVRTFDSEDEDVAKPMSYDEKRQLSLDINKLPG 638
+R+ S+ + +KK P A A + + +D D K+P
Sbjct: 189 LRQYMFSSLKNSKKYAPTEAQLNAVDALIDSMSLAKKDEKTDTLED-----LFPTTKIPN 243
Query: 639 DKLGKVVHIIQSR--EPSLREPNPDEIEIDFETLKPSTLRELEQYVSSCLRKRTYKKTPK 696
+ ++ + R P P + + + + +S + K
Sbjct: 244 PRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEAKK 303
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage
RB69 [TaxId: 12353]}
Length = 528
Score = 29.6 bits (65), Expect = 1.5
Identities = 28/266 (10%), Positives = 60/266 (22%), Gaps = 23/266 (8%)
Query: 371 PLWYKYCSEIIAELFHKKHQNYAWPFYTPVDVEKLGLTDYFDIIKKPMDLGTVRKKMRNR 430
++ + + L + ++ MD +
Sbjct: 263 ESKFRDTNHWVDFLDKFARERMEPAIDR--GFREMCEYMNNKQHLMFMDREAIAGPPLGS 320
Query: 431 TYKTAKEFADDVRLIFSNCYKYNPPDHNVVTMARQLSAVFEDRFAKMPDESNLASRAAAS 490
N + + + + + P A +
Sbjct: 321 KGIGGFWTGKKR--YALNVWDMEGTRYAEPKLKIMGLET---QKSSTPKAVQKALKECIR 375
Query: 491 VSSDDDSEDERQNQLKYLQEQLKSLTDQIRLLVEDSTKPKKKKKKNRDQPKSKMPMGQNS 550
+ E ++ ++ +E + I S+ K P K P
Sbjct: 376 RMLQEGEESLQEYFKEFEKEFRQLNYISIAS---VSSANNIAKYDVGGFPGPKCPFHIRG 432
Query: 551 AMMNDHVNKMNKAPAPLNNGQKPKSLNNVRKPQASNPQQAKKPKPNNANTVAAKKQVRTF 610
+ + K N + G+K L ++ P +A
Sbjct: 433 ILTYNRAIKGNIDAPQVVEGEKVYVLP------------LREGNPFGDKCIAWPSGTEIT 480
Query: 611 DSEDEDVAKPMSYDEKRQLSLDINKL 636
D +DV M Y + + I L
Sbjct: 481 DLIKDDVLHWMDYTVLLEKTF-IKPL 505
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 28.3 bits (62), Expect = 4.5
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 110 PVVPPKHRP-------GRNTNQLQYIVKNVMKA 135
PV PP RP R + L + + +++KA
Sbjct: 239 PVPPPPVRPSISFNESQRGEDDLTFKLADILKA 271
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
{Escherichia coli [TaxId: 562]}
Length = 511
Score = 27.8 bits (61), Expect = 6.5
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 660 PDEIEIDFETLKPSTLRELEQYVSSCLRKRTYKKTPKPKD-EKFAEKKHELEKRL 713
P I D+ + + +L +V+ + P + + E L L
Sbjct: 36 PLMILADYRMQQNQSGFDLRHFVNVNFTLPKEGEKYVPPEGQSLREHIDGLWPVL 90
>d2ajta1 b.43.2.2 (A:329-498) L-arabinose isomerase AraA
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 27.0 bits (60), Expect = 6.6
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 193 TMFTNCYVYN-KPGEDVVLMAQNLE 216
T F Y Y+ + G D+VL + LE
Sbjct: 1 TSFMEDYTYHFEKGNDLVLGSHMLE 25
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 25.1 bits (55), Expect = 8.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 702 FAEKKHELEKRLQDVTSQIDSTNKKLKKPK 731
E + EKRL+++ + + + +KL P
Sbjct: 2 VEEWRRRQEKRLKELLALAERSQRKLASPG 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.306 0.124 0.354
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,752,804
Number of extensions: 133011
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 31
Length of query: 779
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 687
Effective length of database: 1,144,436
Effective search space: 786227532
Effective search space used: 786227532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.1 bits)