BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14235
(645 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/431 (77%), Positives = 381/431 (88%)
Query: 28 ASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPE 87
+ST+LK +LA IP EQ R+K FR+ +G+T VG++TVDMMYGGMRG+KGLV ETSVLDP+
Sbjct: 2 SSTNLKDILADLIPKEQARIKTFRQQHGNTAVGQITVDMMYGGMRGMKGLVYETSVLDPD 61
Query: 88 EGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147
EGIRFRG SIPECQK+LPKAKGGEEPLPEGLFWLLVTG +P+E QV LSK WA RA LP
Sbjct: 62 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 121
Query: 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAK 207
SHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE +YED MDLIAK
Sbjct: 122 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 181
Query: 208 LPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGG 267
LP VAA IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGG
Sbjct: 182 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGG 241
Query: 268 NVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 327
NVSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ++VG +VS+EKL
Sbjct: 242 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKL 301
Query: 328 KEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVL 387
+++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL
Sbjct: 302 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVL 361
Query: 388 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIER 447
+E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ER
Sbjct: 362 LEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLER 421
Query: 448 PKSLSTNDLVK 458
PKS+ST+ L+K
Sbjct: 422 PKSMSTDGLIK 432
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/431 (77%), Positives = 381/431 (88%)
Query: 28 ASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPE 87
+ST+LK +LA IP EQ R+K FR+ +G+T VG++TVDMMYGGMRG+KGLV ETSVLDP+
Sbjct: 2 SSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPD 61
Query: 88 EGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147
EGIRFRG SIPECQK+LPKAKGGEEPLPEGLFWLLVTG +P+E QV LSK WA RA LP
Sbjct: 62 EGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALP 121
Query: 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAK 207
SHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE +YED MDLIAK
Sbjct: 122 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAK 181
Query: 208 LPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGG 267
LP VAA IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGG
Sbjct: 182 LPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGG 241
Query: 268 NVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 327
NVSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ++VG +VS+EKL
Sbjct: 242 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKL 301
Query: 328 KEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVL 387
+++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL
Sbjct: 302 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVL 361
Query: 388 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIER 447
+E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ER
Sbjct: 362 LEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLER 421
Query: 448 PKSLSTNDLVK 458
PKS+ST+ L+K
Sbjct: 422 PKSMSTDGLIK 432
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/431 (75%), Positives = 377/431 (87%)
Query: 28 ASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPE 87
+ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+
Sbjct: 2 SSTNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPD 61
Query: 88 EGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147
EGIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+ QV +SK WA RA LP
Sbjct: 62 EGIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALP 121
Query: 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAK 207
SHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAK
Sbjct: 122 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAK 181
Query: 208 LPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGG 267
LP VAA IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGG
Sbjct: 182 LPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGG 241
Query: 268 NVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 327
NVSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL
Sbjct: 242 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKL 301
Query: 328 KEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVL 387
+++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL
Sbjct: 302 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVL 361
Query: 388 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIER 447
+E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ER
Sbjct: 362 LEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLER 421
Query: 448 PKSLSTNDLVK 458
PKS+ST L K
Sbjct: 422 PKSMSTAGLEK 432
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/430 (76%), Positives = 376/430 (87%)
Query: 29 STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1 STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60
Query: 89 GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+ QV +SK WA RA LPS
Sbjct: 61 GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120
Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKL 208
HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKL
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKL 180
Query: 209 PVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGN 268
P VAA IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGN
Sbjct: 181 PCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGN 240
Query: 269 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLK 328
VSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+
Sbjct: 241 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLR 300
Query: 329 EFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLI 388
++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+
Sbjct: 301 DYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLL 360
Query: 389 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERP 448
E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERP
Sbjct: 361 EQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 420
Query: 449 KSLSTNDLVK 458
KS+ST L K
Sbjct: 421 KSMSTAGLEK 430
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/430 (74%), Positives = 364/430 (84%)
Query: 28 ASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPE 87
+ST+LK VLAA IP EQ R+K FR+ +G T +G++TVDM YGGMRG+KGLV ETSVLDP+
Sbjct: 2 SSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPD 61
Query: 88 EGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147
EGIRFRG SIPECQK+LPK G EPLPEGLFWLLVTG +P+ AQV LSK WA RA LP
Sbjct: 62 EGIRFRGFSIPECQKLLPKGGXGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAALP 121
Query: 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAK 207
SHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+ ++KYWE VYE +MDLIAK
Sbjct: 122 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAK 181
Query: 208 LPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGG 267
LP VAA IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGG
Sbjct: 182 LPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGG 241
Query: 268 NVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 327
NVSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL WL +LQ+ ++ L
Sbjct: 242 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAXXXAGADASL 301
Query: 328 KEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVL 387
+++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL
Sbjct: 302 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVL 361
Query: 388 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIER 447
+E G NPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ER
Sbjct: 362 LEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLER 421
Query: 448 PKSLSTNDLV 457
PKS+ST+ L+
Sbjct: 422 PKSMSTDGLI 431
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/430 (73%), Positives = 361/430 (83%), Gaps = 4/430 (0%)
Query: 28 ASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPE 87
+ST+LK VLAA IP EQ R+K FR+ +G T +G++TVDM YGGMRG+KGLV ETSVLDP+
Sbjct: 2 SSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPD 61
Query: 88 EGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147
EGIRFRG SIPECQK+LPK GGE LFWLLVTG +P+ AQV LSK WA RA LP
Sbjct: 62 EGIRFRGFSIPECQKLLPKGGGGEPLPEG-LFWLLVTGQIPTGAQVSWLSKEWAKRAALP 120
Query: 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAK 207
SHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+ ++KYWE VYE +MDLIAK
Sbjct: 121 SHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAK 180
Query: 208 LPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGG 267
LP VAA IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGG
Sbjct: 181 LPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGG 240
Query: 268 NVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 327
NVSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL WL +LQ+ G + S L
Sbjct: 241 NVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGADAS---L 297
Query: 328 KEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVL 387
+++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL
Sbjct: 298 RDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVL 357
Query: 388 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIER 447
+E G NPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ER
Sbjct: 358 LEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLER 417
Query: 448 PKSLSTNDLV 457
PKS+ST+ L+
Sbjct: 418 PKSMSTDGLI 427
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 179/376 (47%), Gaps = 47/376 (12%)
Query: 66 MMYGGMRGIKGLVCETSV--LDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122
M+ G+ G+K +CE+S+ LD G + +RG+ + E E+ E + L
Sbjct: 1 MIQKGLEGVK--ICESSICYLDGINGRLYYRGIPVEEL---------AEKSTFEETAYFL 49
Query: 123 VTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAK 182
G +P++++++ + A ELP+ + +L + P +LH + ++ S
Sbjct: 50 WYGKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYIDVLKIFLSIHGSMDG--- 106
Query: 183 AYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWS--ANFT 240
ND E + E ++ + + P + A YR + KG I KD S NF
Sbjct: 107 --ND--------EDLREKAIRVASVFPTILAYYYRYS----KGKELIRPRKDLSHVENFY 152
Query: 241 SMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLH 300
M+ + ++ L+ + + + N S ++ S LSD Y + L GPLH
Sbjct: 153 YMMFGERNEKIRLLESAFILLMEQDI-NASTFAALVIASTLSDLYSCIVGALGALKGPLH 211
Query: 301 GLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQR 360
G A+++V L +++G SE++++EF+ LK + + G+GH V + DPR +
Sbjct: 212 GGASEKVPPML----EEIG---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLK 264
Query: 361 EFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYT 420
Q+H PD LF++ S++ + I + K+KN +PNVD +S VL + G N +T
Sbjct: 265 RVLQEHFPDSKLFRIASKLEE-----YIVSNKIKNIYPNVDLYSSVLFEELGFPR-NMFT 318
Query: 421 VLFGVSRALGVLASLI 436
LF +R +G A +I
Sbjct: 319 ALFATARVVGWTAHVI 334
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 114/416 (27%), Positives = 187/416 (44%), Gaps = 58/416 (13%)
Query: 57 TKVGEVTVDMMYGGMRGIKGLVCETSV--LDPEEGIRFRGLSIPECQKVLPKAKGGEEPL 114
++G T D YG + C + + +D ++G+ + P A+ E
Sbjct: 43 AQLGVFTFDPGYG-----ETAACNSKITFIDGDKGVLL--------HRGYPIAQLAENAS 89
Query: 115 PEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
E + +LL+ G++P++AQ + + + L + N F HPM+ + AL
Sbjct: 90 YEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGAL 149
Query: 175 NSESKFAKAYND-GVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 233
S F ND + ++ +M LIAK+P +AA Y+ + G+ +
Sbjct: 150 ---SAFYPDANDIAIPANRDLA-----AMRLIAKIPTIAAWAYK--YTQGEAFIYPRNDL 199
Query: 234 DWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYL 286
+++ NF SM+ N M L +H+DHE N S TV L GS ++P+
Sbjct: 200 NYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQ-NASTSTVRLAGSTGANPFA 258
Query: 287 SFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNT--LKSGQVVPGY 344
AAG+ L GP HG AN+ VL L ++ ++ E + FI SG + G+
Sbjct: 259 CIAAGIAALWGPAHGGANEAVLKMLARIGKK-------ENIPAFIAQVKDKNSGVKLMGF 311
Query: 345 GHAVLRKTDPR-----YTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNP-WP 398
GH V + DPR TC + + DD L L ++ K+ L + V+ +P
Sbjct: 312 GHRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEKI---ALSDDYFVQRKLYP 368
Query: 399 NVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLP---IERPKSL 451
NVD +SG++L+ G+ + +TVLF V+R G ++ W + P I RP+ L
Sbjct: 369 NVDFYSGIILKAMGIP-TSMFTVLFAVARTTGWVSQ--WKEMIEEPGQRISRPRQL 421
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 165/354 (46%), Gaps = 45/354 (12%)
Query: 118 LFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSE 177
L + L+ G++P++ QV++ + ++ + HV + P H HPMS A + L +E
Sbjct: 94 LCYALIYGELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAE 153
Query: 178 SKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSA 237
+H + E E + +++AK+ +AA YR+ GK ++
Sbjct: 154 H---------IHNGQK-ESQDEVAKNIVAKIATIAAMAYRHNH--GKKFLEPKMEYGYAE 201
Query: 238 NFTSMLGFDNHQFT------ELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAG 291
NF M+ D+ + + M +H+DHE N S TV L GS + PY + AG
Sbjct: 202 NFLYMMFADDESYKPDELHIKAMDTIFMLHADHEQ-NASTSTVRLSGSTGNSPYAAIIAG 260
Query: 292 MNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQ--VVPGYGHAVL 349
+ L GP HG AN+ VL K+ ++G S E + ++I + G+GH V
Sbjct: 261 ITALWGPAHGGANEAVL----KMLSEIG---STENIDKYIAKAKDKDDPFRLMGFGHRVY 313
Query: 350 RKTDPRYT-----CQREFAQKHLPDDSLFKLVSQVYKVV--PPVLIETGKVKNPWPNVDA 402
+ TDPR T C+ A+ D+ L + ++ ++ IE + + NVD
Sbjct: 314 KNTDPRATAMKKNCEEILAKLGHSDNPLLTVAKKLEEIALQDEFFIE----RKLFSNVDF 369
Query: 403 HSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLP---IERPKSLST 453
+SG++L+ G+ E + +T +F ++R G ++ W + P I RP+ L T
Sbjct: 370 YSGIILKAMGIPE-DMFTAIFALARTSGWISQ--WIEMVNDPAQKIGRPRQLYT 420
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 166/356 (46%), Gaps = 37/356 (10%)
Query: 84 LDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWAS 142
+D +EG + +RG S+ E E E + +LL G +PS ++++ K A
Sbjct: 18 IDGKEGKLYYRGYSVEEL---------AELSTFEEVVYLLWWGKLPSLSELENFKKELAK 68
Query: 143 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 202
LP V+ ++ P + HPM I+ L + +D E VY +
Sbjct: 69 SRGLPKEVIEIMEALPKNTHPMGALRTIISYLGN-------IDDSGDIPVTPEEVYRIGI 121
Query: 203 DLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDN--HQFTELMRLYLTI 260
+ AK+P + A YR + G +ANF ML + ++ + M + L +
Sbjct: 122 SVTAKIPTIVANWYR--IKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALIL 179
Query: 261 HSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGD 320
+++HE N S V VGS LSD Y + AG+ L GP+HG A +E + +Q +
Sbjct: 180 YAEHEI-NASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAI-------KQFME 231
Query: 321 NVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVY 380
S EK++E+ + L+ + + G GH V + DPR +++A K L D LF++ ++
Sbjct: 232 IGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASK-LGDKKLFEIAERLE 290
Query: 381 KVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLK-EMNYYTVLFGVSRALGVLASL 435
++V L + G NVD SG L +YG+K + YT +F + R G A L
Sbjct: 291 RLVEEYLSKKGIS----INVDYWSG--LVFYGMKIPIELYTTIFAMGRIAGWTAHL 340
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 174/387 (44%), Gaps = 39/387 (10%)
Query: 79 CETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALS 137
E + +D E G + +RG SI + E E + +L++ G +P+ ++
Sbjct: 15 TEITYIDGELGRLYYRGYSIYDL---------AEFSNFEEVSYLILYGKLPNREELNWFQ 65
Query: 138 KSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYV 197
+ LP ++ L PM A++ L G+ SK E
Sbjct: 66 EKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLL------------GIEDSKNDERT 113
Query: 198 YEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMR 255
+ LI+K P + A R + G I D S NF ML D N ++ M
Sbjct: 114 DIKGIKLISKFPTIVANYAR--LRKGLDIIEPDPKLSHSENFLYMLYGDRPNEIKSKAMD 171
Query: 256 LYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQ 315
+ L +H DHE N S +V S SD Y S AG++ L GPLHG AN E L K+
Sbjct: 172 VTLILHIDHEM-NASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEAL----KMF 226
Query: 316 QQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKL 375
+++G S EK+ ++I N L + Q + G+GH V + DPR +++A K L + ++
Sbjct: 227 KEIG---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYA-KLLAEKEGGEI 282
Query: 376 VS--QVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 433
+ Q+ + V + I+ K +PNVD S ++ G E +++ +F +R +G +A
Sbjct: 283 YTLYQIAEKVEEIGIKYLGPKGIYPNVDFFSSIVFYSLGF-EPDFFPAVFASARVVGWVA 341
Query: 434 SLIWDRALGLPIERPKSLSTNDLVKQY 460
I + I RPK+ ++ K+Y
Sbjct: 342 H-IMEYIKDNKIIRPKAYYKGEIGKKY 367
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 184/400 (46%), Gaps = 53/400 (13%)
Query: 72 RGIKGLVCETS---VLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
RG++G++ S +D ++G + + G+ I E E+ E +LL+ G +
Sbjct: 5 RGLEGVLFTESRMCYIDGQQGKLYYYGIPIQEL---------AEKSSFEETTFLLLHGRL 55
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG 187
P +++ S + A R LP+H++ +P HPMS A+ S+F D
Sbjct: 56 PRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAV------SEFGML--DP 107
Query: 188 VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWS--ANFTSML-G 244
E +YE +DLIAK + A R +G I +D S ANF M G
Sbjct: 108 TEGDISREALYEKGLDLIAKFATIVAANKRLK----EGKEPIPPREDLSHAANFLYMANG 163
Query: 245 FD-NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303
+ + + LM L +H++H G N S T S +D Y + A + L GP HG A
Sbjct: 164 VEPSPEQARLMDAALILHAEH-GFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGA 222
Query: 304 NQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRY----TCQ 359
N+ V+ ++ Q++G + E+ +E++ L + + G GH V + DPR
Sbjct: 223 NEAVM----RMIQEIG---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLA 275
Query: 360 REFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNP---WPNVDAHSGVLLQYYGLKEM 416
R A+KH S+ Y+++ V E GKV NP +PNVD +SGV+ G +
Sbjct: 276 RLVAEKHGH--------SKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFS-L 326
Query: 417 NYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDL 456
++T +F V+R G + ++ + L + RP + +L
Sbjct: 327 EFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGEL 366
>pdb|3L96|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L96|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L97|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L97|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L98|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L98|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L99|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
pdb|3L99|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
Length = 426
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 190/424 (44%), Gaps = 63/424 (14%)
Query: 59 VGEVTVDMMYGGMRGI--------KGLVCETSV--LDPEEGIRF-RGLSIPECQKVLPKA 107
+G+ +D+ G +G+ CE+ + +D +EGI RG I + L
Sbjct: 24 LGQDVIDIRTLGSKGVFTFDPGFTSTTSCESKITFIDGDEGILLHRGFPIDQ----LATD 79
Query: 108 KGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQF 167
E + ++L+ G+ P++ Q + + + + + F HPM+
Sbjct: 80 SNYLE-----VCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVM 134
Query: 168 SAAITALNSESKFAKAYNDG--VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKG 225
AL A Y+D V+ ++ E + L++K+P +AA Y+ + G+
Sbjct: 135 CGITGAL------AAFYHDSLDVNNPRHREIA---AFRLLSKMPTMAAMCYK--YSIGQP 183
Query: 226 IGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLV 277
+ ++ NF +M+ F N M L +H+DHE N S TV
Sbjct: 184 FVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTA 241
Query: 278 GSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKS 337
GS+ ++P+ AAG+ L GP HG AN+ L K+ +++G +E + EF+
Sbjct: 242 GSSGANPFACIAAGIASLWGPAHGGANEAAL----KMLEEIG---KKENIPEFVRRAKDK 294
Query: 338 GQV--VPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLVSQVYKVV--PPVLIE 389
+ G+GH V + DPR T RE + L + D L ++ ++ + P IE
Sbjct: 295 NDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE 354
Query: 390 TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPK 449
K +PNVD +SG++L+ G+ + +TV+F ++R +G +A + G+ I RP+
Sbjct: 355 ----KKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWIAHWSEMHSDGMKIARPR 409
Query: 450 SLST 453
L T
Sbjct: 410 QLYT 413
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 179/377 (47%), Gaps = 43/377 (11%)
Query: 77 LVCETSV--LDPEEGIR-FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQV 133
L+ TS+ +D E+GI +RG I E ++ E + +L++ G +P++ ++
Sbjct: 30 LIKSTSISDIDGEKGILWYRGYRIEELARL---------STYEEVSYLILYGRLPTKREL 80
Query: 134 QALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS----ESKFAKAYNDGVH 189
+ EL V ++ N HPM AA+ A + K +A + G +
Sbjct: 81 EDYINRMKKYRELHPATVEVIRNLAK-AHPMFALEAAVAAEGAYDEDNQKLIEALSVGRY 139
Query: 190 KSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDW--SANFTSML-GFD 246
K++ E Y + L+AK+P + A YR + +G+ + D +ANF M+ G +
Sbjct: 140 KAEEKELAYRIAEKLVAKMPTIVAYHYRFS----RGLEVVRPRDDLGHAANFLYMMFGRE 195
Query: 247 NHQFTEL-MRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305
+ LYL +H+DHE S H+V S LSD Y S AA + L GPLHG AN+
Sbjct: 196 PDPLASRGIDLYLILHADHEV-PASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGGANE 254
Query: 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLK-SGQVVPGYGHAVLRKTDPRYTCQREFAQ 364
+ + ++G + K KE + K G + G GH V + DPR +EF++
Sbjct: 255 MAV----RNYLEIG---TPAKAKEIVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSR 307
Query: 365 KHLPD----DSLFKLVSQV-YKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYY 419
++ +LF + S + +V+ + K+ +PNVD SG+ Y G+ Y+
Sbjct: 308 DYVAKFGDPQNLFAIASAIEQEVLSHPYFQQRKL---YPNVDFWSGIAFYYMGIP-YEYF 363
Query: 420 TVLFGVSRALGVLASLI 436
T +F +SR +G +A ++
Sbjct: 364 TPIFAMSRVVGWVAHVL 380
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
Length = 426
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 187/424 (44%), Gaps = 63/424 (14%)
Query: 59 VGEVTVDMMYGGMRGI--------KGLVCETSV--LDPEEGIRF-RGLSIPECQKVLPKA 107
+G+ +D+ G +G+ CE+ + +D +EGI RG I + L
Sbjct: 24 LGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQ----LATD 79
Query: 108 KGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQF 167
E + ++L+ G+ P++ Q + + + + + F HPM+
Sbjct: 80 SNYLE-----VCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVM 134
Query: 168 SAAITALNSESKFAKAYNDG--VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKG 225
AL A Y+D V+ ++ E + L++K+P +AA Y+ + G+
Sbjct: 135 CGITGAL------AAFYHDSLDVNNPRHREIA---AFRLLSKMPTMAAMCYK--YSIGQP 183
Query: 226 IGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLV 277
+ ++ NF +M+ F N M L +H+DHE N S TV
Sbjct: 184 FVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTA 241
Query: 278 GSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKS 337
GS+ ++P+ AAG+ L GP HG AN+ L L+++ S + + EF
Sbjct: 242 GSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEIS-------SVKHIPEFFRRAKDK 294
Query: 338 GQV--VPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLVSQVYKVV--PPVLIE 389
+ G+GH V + DPR T RE + L + D L ++ ++ + P IE
Sbjct: 295 NDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE 354
Query: 390 TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPK 449
K +PNVD +SG++L+ G+ + +TV+F ++R +G +A + G+ I RP+
Sbjct: 355 ----KKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWIAHWSEMHSDGMKIARPR 409
Query: 450 SLST 453
L T
Sbjct: 410 QLYT 413
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWB|B Chain B, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWC|A Chain A, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
pdb|1OWC|B Chain B, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
Length = 427
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 187/424 (44%), Gaps = 63/424 (14%)
Query: 59 VGEVTVDMMYGGMRGI--------KGLVCETSV--LDPEEGIRF-RGLSIPECQKVLPKA 107
+G+ +D+ G +G+ CE+ + +D +EGI RG I + L
Sbjct: 25 LGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQ----LATD 80
Query: 108 KGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQF 167
E + ++L+ G+ P++ Q + + + + + F HPM+
Sbjct: 81 SNYLE-----VCYILLNGEKPTQEQYDEFKTTVTLHTMIHEQITRLFHAFRRDSHPMAVM 135
Query: 168 SAAITALNSESKFAKAYNDG--VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKG 225
AL A Y+D V+ ++ E + L++K+P +AA Y+ + G+
Sbjct: 136 CGITGAL------AAFYHDSLDVNNPRHREIA---AFRLLSKMPTMAAMCYK--YSIGQP 184
Query: 226 IGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLV 277
+ ++ NF +M+ F N M L +H+DHE N S TV
Sbjct: 185 FVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTA 242
Query: 278 GSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKS 337
GS+ ++P+ AAG+ L GP HG AN+ L L+++ S + + EF
Sbjct: 243 GSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEIS-------SVKHIPEFFRRAKDK 295
Query: 338 GQV--VPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLVSQVYKVV--PPVLIE 389
+ G+GH V + DPR T RE + L + D L ++ ++ + P IE
Sbjct: 296 NDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE 355
Query: 390 TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPK 449
K +PNVD +SG++L+ G+ + +TV+F ++R +G +A + G+ I RP+
Sbjct: 356 ----KKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWIAHWSEMHSDGMKIARPR 410
Query: 450 SLST 453
L T
Sbjct: 411 QLYT 414
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXE|B Chain B, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXG|A Chain A, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
pdb|1NXG|B Chain B, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
Length = 427
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 106/424 (25%), Positives = 186/424 (43%), Gaps = 63/424 (14%)
Query: 59 VGEVTVDMMYGGMRGI--------KGLVCETSV--LDPEEGIRF-RGLSIPECQKVLPKA 107
+G+ +D+ G +G+ CE+ + +D +EGI RG I + L
Sbjct: 25 LGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQ----LATD 80
Query: 108 KGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQF 167
E + ++L+ G+ P++ Q + + + + + F HPM+
Sbjct: 81 SNYLE-----VCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVM 135
Query: 168 SAAITALNSESKFAKAYNDG--VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKG 225
AL A Y+D V+ ++ E + L++K+P +AA Y+ + G+
Sbjct: 136 CGITGAL------AAFYHDSLDVNNPRHREIA---AFRLLSKMPTMAAMCYK--YSIGQP 184
Query: 226 IGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLV 277
+ ++ NF +M+ F N M L +H+DHE N S TV
Sbjct: 185 FVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTA 242
Query: 278 GSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKS 337
GS+ ++P+ AAG+ L GP HG AN+ L L+++ S + + EF
Sbjct: 243 GSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEIS-------SVKHIPEFFRRAKDK 295
Query: 338 GQV--VPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLVSQVYKVV--PPVLIE 389
+ G+GH V + DPR T RE + L + D L ++ ++ + P IE
Sbjct: 296 NDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE 355
Query: 390 TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPK 449
K +PNVD +SG++L+ G+ + +TV+ ++R +G +A + G+ I RP+
Sbjct: 356 ----KKLYPNVDFYSGIILKAMGIPS-SMFTVIAAMARTVGWIAHWSEMHSDGMKIARPR 410
Query: 450 SLST 453
L T
Sbjct: 411 QLYT 414
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 162/357 (45%), Gaps = 38/357 (10%)
Query: 120 WLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESK 179
++L+ G+ P+ Q + + + + + + F HP + + AL +
Sbjct: 91 YILLYGEAPTREQYEKFKTTVTRHTXVHEQIASFFHGFRRDAHPXAVXCGVVGALAAFYH 150
Query: 180 FAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANF 239
+ N+ +H+ + L++K P +AA Y+ + G+ + ++ NF
Sbjct: 151 DSLDINNDLHREI-------TAYRLLSKXPTLAAXCYK--YSTGQPFIYPRNDLSYAENF 201
Query: 240 ------TSMLGFD-NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGM 292
T ++ N T+H+DHE N S TV L GS+ ++P+ AAG+
Sbjct: 202 LHXXFATPCEEYEVNPVVARAXDKIFTLHADHEQ-NASTSTVRLAGSSGANPFACIAAGI 260
Query: 293 NGLAGPLHGLANQEVLIWLKKLQ--QQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLR 350
L GP HG AN+ L L+++ + + V K K+ + + G+GH V +
Sbjct: 261 ASLWGPAHGGANEACLKXLEEIGSVDNIPEYVDRAKDKDDPFR-------LXGFGHRVYK 313
Query: 351 KTDPRYTCQREFAQKHLPD----DSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGV 406
DPR T RE + L + D L + ++ ++ + E K +PNVD +SG+
Sbjct: 314 NYDPRATVXRETCHEVLKELNIQDPLLDVAXELERIA--LSDEYFVSKKLYPNVDFYSGI 371
Query: 407 LLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLP---IERPKSLSTNDLVKQY 460
+L+ G+ ++ +TV+F +SR +G +A W+ P I RP+ L T ++ + +
Sbjct: 372 ILKAIGIP-VSXFTVIFAISRTIGWIAH--WNEXHSDPLNRIGRPRQLYTGEVQRDF 425
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
pdb|1VGM|B Chain B, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 378
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 174/393 (44%), Gaps = 49/393 (12%)
Query: 72 RGIKGLVCETSVLDPEEGI----RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
RG++ ++ +T+ L +GI R+RG I + E L L++ G++
Sbjct: 7 RGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYASY---------EELIHLMLYGEL 57
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS--ESKFAKAYN 185
P+ Q+ + E+P V++ + + P + + A L S + K+ +A N
Sbjct: 58 PNRQQLNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRATN 117
Query: 186 DGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANF-TSMLG 244
E ++ +IAK + A IYR + G + ++ ++ +F + G
Sbjct: 118 K------------ELAVQIIAKTATITANIYRA--KEGLKPKIPEPSESYAESFLAATFG 163
Query: 245 FD-NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSA-LSDPYLSFAAGMNGLAGPLHGL 302
+ + M L +++DHE ++ T LV S+ LSD Y A + L GPLHG
Sbjct: 164 KKPTQEEIKAMDASLILYTDHEVP--ASTTAALVASSTLSDMYSCIVAALAALKGPLHGG 221
Query: 303 ANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRY----TC 358
A +E +Q V E K F +K + G+GH V + DPR T
Sbjct: 222 AAEEAF------KQFVEIGSVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTL 275
Query: 359 QREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNY 418
+ FA+K+ +++ ++ K+ ++T K+ +PN D +SG++ G +
Sbjct: 276 AKSFAEKNENVKKYYEIAERIEKLG----VDTFGSKHIYPNTDFYSGIVFYALGFP-IYM 330
Query: 419 YTVLFGVSRALGVLASLIWDRALGLPIERPKSL 451
+T LF +SR LG LA +I + RP++L
Sbjct: 331 FTSLFALSRVLGWLAHIIEYVEEQHRLIRPRAL 363
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 167/403 (41%), Gaps = 50/403 (12%)
Query: 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVP 128
G+ + V + +D E+GI R+RG +I + L EE + +L++ G +P
Sbjct: 7 GLENVIIKVTNLTFIDGEKGILRYRGYNIED----LVNYGSYEETI-----YLMLYGKLP 57
Query: 129 SEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGV 188
++ ++ L E+P V+ + P + AL S K
Sbjct: 58 TKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALASIDK--------- 108
Query: 189 HKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNH 248
K+ E E ++ +IAK+ + A +YR +G K I D A + F
Sbjct: 109 -NFKWKENDKEKAISIIAKMATLVANVYRRK-EGNKP--RIPEPSDSFAKSFLLASFARE 164
Query: 249 QFTE---LMRLYLTIHSDHEGGNVSAHTVH--LVGSALSDPYLSFAAGMNGLAGPLHGLA 303
T+ M L +++DHE V A T + S LSD Y S A + L GPLHG A
Sbjct: 165 PTTDEINAMDKALILYTDHE---VPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGA 221
Query: 304 NQEVLIWL------KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYT 357
+E ++Q D V +K + + G+GH V + DPR
Sbjct: 222 AEEAFKQFIEIGDPNRVQNWFNDKVVNQKNR------------LMGFGHRVYKTYDPRAK 269
Query: 358 CQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMN 417
++ A + ++ + ++ + + + I+ K +PN D +SG++ G +
Sbjct: 270 IFKKLALTLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFP-VY 328
Query: 418 YYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQY 460
+T LF +SR LG LA +I + RP++L ++Y
Sbjct: 329 MFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEYQEY 371
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/397 (22%), Positives = 174/397 (43%), Gaps = 48/397 (12%)
Query: 73 GIKGLVC-ETSV--LDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVP 128
G+KG+ C ETS+ +D E+G + +RG K + EE +L++ G +P
Sbjct: 4 GLKGITCVETSISHIDGEKGRLIYRG----HHAKDIALNHSFEEAA-----YLILFGKLP 54
Query: 129 SEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGV 188
S ++Q A+ LP H+ ++ + PN++ MS ++AL +
Sbjct: 55 STEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALGENT---------- 104
Query: 189 HKSKYWEYVY----EDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLG 244
Y + E+++ LIA P + A YR + G+ A + N+ ML
Sbjct: 105 -------YTFHPKTEEAIRLIAITPSIIA--YRKRWTRGEQAIAPSSQYGHVENYYYMLT 155
Query: 245 FD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGL 302
+ + + + Y+ + ++H G N S + + S SD + A + + GPLHG
Sbjct: 156 GEQPSEAKKKALETYMILATEH-GMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGG 214
Query: 303 ANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREF 362
A V K+ + +G+ +E + ++ L+ G+ + G+GH V + DPR R+
Sbjct: 215 APSAV----TKMLEDIGE---KEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQK 267
Query: 363 AQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVL 422
A++ +D L V +L + + NV+ ++ +++ + +T
Sbjct: 268 AEEVAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDFDD-ELFTPT 326
Query: 423 FGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 459
F SR +G A ++ ++A I RP + T + ++
Sbjct: 327 FSASRMVGWCAHVL-EQAENNMIFRPSAQYTGAIPEE 362
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase
Length = 378
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 145/340 (42%), Gaps = 29/340 (8%)
Query: 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALN 175
E + +LL ++P++++++A S +L +V ++ HPM A++ L
Sbjct: 46 EQVAYLLWNSELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLG 105
Query: 176 SESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDW 235
+ N + E E +M L+A P V A Y + G+ + + D+
Sbjct: 106 A--------NHARAQDSSPEANLEKAMSLLATFPSVVA--YDQRRRRGEELIEPREDLDY 155
Query: 236 SANFTSMLGFDNH--QFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMN 293
SANF M + + E + + ++++H N S T ++ S L+D + + +
Sbjct: 156 SANFLWMTFGEEAAPEVVEAFNVSMILYAEH-SFNASTFTARVITSTLADLHSAVTGAIG 214
Query: 294 GLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW--NTLKSGQVVPGYGHAVLRK 351
L GPLHG AN+ V+ +++ + +++ E + W + L + V G+GH V +
Sbjct: 215 ALKGPLHGGANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKN 274
Query: 352 TDPRYTCQREFAQ---KHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLL 408
D R + KH + L Y + + E ++K PN+D +G
Sbjct: 275 GDSRVPTMKSALDAMIKHYDRPEMLGL----YNGLEAAMEEAKQIK---PNLDYPAGPTY 327
Query: 409 QYYGLKEMNYYTVLFGVSRALGVLASL---IWDRALGLPI 445
G + +T LF +R G A + + D AL P+
Sbjct: 328 NLMGF-DTEMFTPLFIAARITGWTAHIMEQVADNALIRPL 366
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 140/327 (42%), Gaps = 26/327 (7%)
Query: 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALN 175
E + LL+ G +P+ ++ A + LP++V T+L P HPM ++AL
Sbjct: 74 EEVAHLLIHGKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALG 133
Query: 176 SESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDW 235
+ + V ++ D D + + + G+ I +
Sbjct: 134 CTLPEKEGHT--VSGAR-------DIADKLLASLSSILLYWYHYSHNGERIQPETDDDSI 184
Query: 236 SANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMN 293
+F +L + + + M + L ++++HE N S T ++ SD Y + +
Sbjct: 185 GGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEF-NASTFTSRVIAGTGSDVYSAIIGAIG 243
Query: 294 GLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTD 353
L GP HG AN+ + L+ Q+ + +E +++ + N +VV G+GH V D
Sbjct: 244 ALRGPKHGGANE---VSLEIQQRYETPDEAEADIRKRVENK----EVVIGFGHPVYTIAD 296
Query: 354 PRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGL 413
PR+ + A++ + K+ + + V+ ET K+ +PN+D S V G+
Sbjct: 297 PRHQVIKRVAKQLSEEGGSLKMY-HIADRLETVMWETKKM---FPNLDWFSAVSYNMMGV 352
Query: 414 -KEMNYYTVLFGVSRALGVLASLIWDR 439
EM +T LF ++R G A +I R
Sbjct: 353 PTEM--FTPLFVIARVTGWAAHIIEQR 377
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 132/334 (39%), Gaps = 43/334 (12%)
Query: 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALN 175
E + +LL+ +P+++++ A +K + LP + L P HP + L
Sbjct: 48 EEVAYLLLKNKLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPXDVXRTGCSXLG 107
Query: 176 SESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKD- 234
+ + +E + L+A P + Y + G + IDT D
Sbjct: 108 N-----------LEPENGFENEQNIADRLVAIFPAIQCYWYHYSHHGKR----IDTELDD 152
Query: 235 --WSANFTSML-GFDNHQFT-ELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAA 290
+ F +L G Q + L ++++HE N S + + LSD Y + A
Sbjct: 153 LTLAGYFLHLLLGKKAAQXAIDCXNASLILYAEHEF-NASTFAARVCSATLSDIYSAVTA 211
Query: 291 GMNGLAGPLHGLANQEV--LIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAV 348
+ L GPLHG AN+ LI L K + + + L + +++ G+GHAV
Sbjct: 212 AIATLRGPLHGGANEAAXDLIXLYKTPSEAIAGIKRK---------LANKELIXGFGHAV 262
Query: 349 LRKTDPRYTCQREFAQKHLP---DDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSG 405
R+ DPR + +AQK P D LF + + K +PN+D +S
Sbjct: 263 YRERDPRNAIIKSWAQKLAPNAADGYLFDISDAIENTXQ-------DEKKLFPNLDFYSA 315
Query: 406 VLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDR 439
+ + +T +F SR G A + R
Sbjct: 316 TAYHFLNIP-TKLFTPIFVXSRVTGWCAHIFEQR 348
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 155/361 (42%), Gaps = 34/361 (9%)
Query: 82 SVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSW 140
+ +D +GI R+ G S+ + A G ++ E + +L + G++P+E +++ ++
Sbjct: 21 TTIDGNKGILRYGGYSVEDII-----ASGAQD---EEIQYLFLYGNLPTEQELRKYKETV 72
Query: 141 ASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALN-SESKFAKAYNDGVHKSKYWEYVYE 199
++P V+ + P ++ AA+ A+ SE+KF +N + +
Sbjct: 73 QKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAASETKFK--WNKDTDR--------D 122
Query: 200 DSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANF-TSMLGFD-NHQFTELMRLY 257
+ ++I ++ + +YR+ + + ++ +F + G + + M
Sbjct: 123 VAAEMIGRMSAITVNVYRHIMNMPAELPK--PSDSYAESFLNAAFGRKATKEEIDAMNTA 180
Query: 258 LTIHSDHEGGNVSAHTVHLVG-SALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQ 316
L +++DHE ++ T LV S LSD Y A + L GPLHG A + +
Sbjct: 181 LILYTDHE--VPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQF----D 234
Query: 317 QVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLV 376
++ D EK F N + + + G+GH V + DPR + A+K V
Sbjct: 235 EIKDPAMVEKW--FNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKV 292
Query: 377 SQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLK-EMNYYTVLFGVSRALGVLASL 435
++ + I+ K +PN D SG++ G N YT LF +SR G A
Sbjct: 293 YEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHF 352
Query: 436 I 436
I
Sbjct: 353 I 353
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 173/398 (43%), Gaps = 49/398 (12%)
Query: 63 TVDMMYGGMRGIKGLVCETS----VLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGL 118
TVD +G+ G+V +T+ V+ + +RG + Q + + E +
Sbjct: 42 TVDERPDIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPV---QDLAARCSF------EQV 92
Query: 119 FWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSES 178
+LL G++P++A++ S+ + + ++++L P++ HPM AI+ L +E
Sbjct: 93 AFLLWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAED 152
Query: 179 KFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKD--WS 236
+ +++K +M ++A LP + A R +G+ I + ++
Sbjct: 153 P--DEDDAAANRAK--------AMRMMAVLPTIVAIDMRRR----RGLPPIAPHSGLGYA 198
Query: 237 ANFTSMLGFDNHQFTELMRLY---LTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMN 293
NF M F T ++ + + ++++H G N S +V S SD Y + +
Sbjct: 199 QNFLHMC-FGEVPETAVVSAFEQSMILYAEH-GFNASTFAARVVTSTQSDIYSAVTGAIG 256
Query: 294 GLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTD 353
L G LHG AN+ V+ + ++GD + +E++ L + + G+GH V R D
Sbjct: 257 ALKGRLHGGANEAVMHDMI----EIGDPANA---REWLRAKLARKEKIMGFGHRVYRHGD 309
Query: 354 PRY-TCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYG 412
R T +R + D L +Y+V + E PN+D +G G
Sbjct: 310 SRVPTMKRALERVGTVRDGQRWL--DIYQV---LAAEMASATGILPNLDFPTGPAYYLMG 364
Query: 413 LKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKS 450
++ +T +F +SR G A I ++A + RP S
Sbjct: 365 F-DIASFTPIFVMSRITGWTAH-IMEQATANALIRPLS 400
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 155/361 (42%), Gaps = 34/361 (9%)
Query: 82 SVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSW 140
+ +D +GI R+ G S+ + A G ++ E + +L + G++P+E +++ ++
Sbjct: 22 TTIDGNKGILRYGGYSVEDII-----ASGAQD---EEIQYLFLYGNLPTEQELRKYKETV 73
Query: 141 ASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALN-SESKFAKAYNDGVHKSKYWEYVYE 199
++P V+ + P ++ AA+ A+ SE+KF +N + +
Sbjct: 74 QKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAASETKFK--WNKDTDR--------D 123
Query: 200 DSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANF-TSMLGFD-NHQFTELMRLY 257
+ ++I ++ + +YR+ + + ++ +F + G + + M
Sbjct: 124 VAAEMIGRMSAITVNVYRHIMNMPAELPK--PSDSYAESFLNAAFGRKATKEEIDAMNTA 181
Query: 258 LTIHSDHEGGNVSAHTVHLVG-SALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQ 316
L +++DHE ++ T LV S LSD Y A + L GPLHG A + +
Sbjct: 182 LILYTDHE--VPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQF----D 235
Query: 317 QVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLV 376
++ D EK F N + + + G+GH V + DPR + A+K V
Sbjct: 236 EIKDPAMVEKW--FNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKV 293
Query: 377 SQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLK-EMNYYTVLFGVSRALGVLASL 435
++ + I+ K +PN D SG++ G N YT LF +SR G A
Sbjct: 294 YEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHF 353
Query: 436 I 436
I
Sbjct: 354 I 354
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene
Expression Via A Novel Mode Of Recognition Of The
Methyl-7 Guanosine Cap Moiety
Length = 207
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 491 LSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSK 525
L R YHLMR E RP+WEE N KGG W++K K
Sbjct: 81 LPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPK 115
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation
Factor Eif4e In Complex With M7gdp And Eif4gi Residues
393 To 490
Length = 213
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 449 KSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIW 508
KS S +DL++ + S +E + + I +PE L + YH+ R + RP W
Sbjct: 54 KSESWSDLLRP-----VTSFQTVEEF---WAIIQNIPE-PHELPLKSDYHVFRNDVRPEW 104
Query: 509 EEPYNQKGGTWRIK-CSKRFSI 529
E+ N KGG W + C K I
Sbjct: 105 EDEANAKGGKWSFQLCGKGADI 126
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp,
Nmr, 20 Structures
Length = 213
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 449 KSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIW 508
KS S +DL++ + Q T+ E++ I +PE L + YH+ R + RP W
Sbjct: 54 KSESWSDLLRPVTSFQ----TVEEFWA----IIQNIPE-PHELPLKSDYHVFRNDVRPEW 104
Query: 509 EEPYNQKGGTWRIK 522
E+ N KGG W +
Sbjct: 105 EDEANAKGGKWSFQ 118
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex
pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex
Length = 248
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 454 NDLVKQYSKTQ--IISLTMIEYYLCAF-YIKYGLPEGAFHLSTRYCYHLMRFENRPIWEE 510
ND K + Q I S +E + + +IK P L + Y L + RP+WE+
Sbjct: 83 NDRSKSWEDMQNEITSFDTVEDFWSLYNHIK---PPSEIKLGSDYS--LFKKNIRPMWED 137
Query: 511 PYNQKGGTWRIKCSK 525
N++GG W I +K
Sbjct: 138 AANKQGGRWVITLNK 152
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7-
Methyl-Gdp
Length = 177
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 497 YHLMRFENRPIWEEPYNQKGGTWRIKCSK 525
+H + + P WE+P + GG W I C +
Sbjct: 59 FHCFKNKIEPKWEDPISANGGKWTISCGR 87
>pdb|3NUZ|A Chain A, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|B Chain B, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|C Chain C, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|D Chain D, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|E Chain E, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|F Chain F, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 398
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 326 KLKEFIWNTLKSGQVVPGYG--HAVLRKTDPRYTCQREFAQKHL 367
K I + + G+ + YG HA LR T+PRY R+F+ K
Sbjct: 10 KDHNLIKSVREDGRFLSSYGVVHAXLRNTEPRYAFHRDFSPKEF 53
>pdb|1L2F|A Chain A, Crystal Structure Of Nusa From Thermotoga Maritima: A
Structure-Based Role Of The N-Terminal Domain
Length = 369
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 43 EQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQK 102
E+ V +RKN+G++K EV +D G ++ + L V DP I S+ E +K
Sbjct: 53 EKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEVVEEVEDPATQI-----SLEEAKK 107
Query: 103 VLPKAKGG 110
+ P A+ G
Sbjct: 108 IDPLAEVG 115
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 497 YHLMRFENRPIWEEPYNQKGGTWRIKCSK 525
+H + + P WE+P GG W I C +
Sbjct: 59 FHCFKNKIEPKWEDPICANGGKWTISCGR 87
>pdb|1HH2|P Chain P, Crystal Structure Of Nusa From Thermotoga Maritima
Length = 344
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 43 EQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQK 102
E+ V +RKN+G++K EV +D G ++ + L V DP I S+ E +K
Sbjct: 28 EKALVSAYRKNFGNSKNVEVVIDRNTGNIKVYQLLEVVEEVEDPATQI-----SLEEAKK 82
Query: 103 VLPKAKGG 110
+ P A+ G
Sbjct: 83 IDPLAEVG 90
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With
M7gpppa And 4e-Bp
pdb|3HXI|A Chain A, Crystal Structure Of Schistosome Eif4e Complexed With
M7gpppg And 4e-Bp
Length = 189
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 498 HLMRFENRPIWEEPYNQKGGTWRIKCSKR 526
++ + + P WE+P N+ GG W I + R
Sbjct: 65 YMFKSDIMPKWEDPKNENGGRWLINVTAR 93
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 497 YHLMRFENRPIWEEPYNQKGGTWRIKCSK 525
+HL + +P+WE+ N+ GG W I+ K
Sbjct: 74 FHLFKEGIKPMWEDDANKNGGKWIIRLRK 102
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g
Cap
pdb|3M94|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With
M2,2,7g Cap
Length = 189
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 478 FYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKR 526
F+ Y + A L+ Y+L + +P+WE+ N KGG W + K+
Sbjct: 38 FWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWLVVVDKQ 86
>pdb|3I45|A Chain A, Crystal Structure Of Putative Twin-Arginine Translocation
Pathway Signal Protein From Rhodospirillum Rubrum Atcc
11170
Length = 387
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 105 PKAKGGEEPLPEGLFWLLVTGDVPS---EAQVQALSKSWASRAELPSHVVTMLNNFPNHL 161
P + ++ PEGLF +L D+P E +V+ L +A R VV+ML P +L
Sbjct: 190 PTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGL---FAGR-----QVVSMLTGEPEYL 241
Query: 162 HPM 164
+P+
Sbjct: 242 NPL 244
>pdb|2PAB|A Chain A, Structure Of Prealbumin, Secondary, Tertiary And
Quaternary Interactions Determined By Fourier Refinement
At 1.8 Angstroms
pdb|2PAB|B Chain B, Structure Of Prealbumin, Secondary, Tertiary And
Quaternary Interactions Determined By Fourier Refinement
At 1.8 Angstroms
pdb|1THC|A Chain A, Crystal Structure Determination At 2.3a Of Human
Transthyretin-3',5'-
Dibromo-2',4,4',6-Tetra-Hydroxyaurone Complex
pdb|1THC|B Chain B, Crystal Structure Determination At 2.3a Of Human
Transthyretin-3',5'-
Dibromo-2',4,4',6-Tetra-Hydroxyaurone Complex
pdb|1THA|A Chain A, Mechanism Of Molecular Recognition. Structural Aspects Of
3, 3'-Diiodo-L-Thyronine Binding To Human Serum
Transthyretin
pdb|1THA|B Chain B, Mechanism Of Molecular Recognition. Structural Aspects Of
3, 3'-Diiodo-L-Thyronine Binding To Human Serum
Transthyretin
pdb|1TLM|A Chain A, Structural Aspects Of Inotropic Bipyridine Binding:
Crystal Structure Determination To 1.9 Angstroms Of The
Human Serum Transthyretin-Milrinone Complex
pdb|1TLM|B Chain B, Structural Aspects Of Inotropic Bipyridine Binding:
Crystal Structure Determination To 1.9 Angstroms Of The
Human Serum Transthyretin-Milrinone Complex
pdb|1RLB|A Chain A, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|B Chain B, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|C Chain C, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|D Chain D, Retinol Binding Protein Complexed With Transthyretin
pdb|1QAB|A Chain A, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|B Chain B, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|C Chain C, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|D Chain D, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
Length = 127
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFV 65
>pdb|1DVX|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Diclofenac
pdb|1DVX|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Diclofenac
pdb|1DVY|A Chain A, Crystal Structure Of Transthyretin In Complex With N-(M-
Trifluoromethylphenyl) Phenoxazine-4,6-Dicarboxylic Acid
pdb|1DVY|B Chain B, Crystal Structure Of Transthyretin In Complex With N-(M-
Trifluoromethylphenyl) Phenoxazine-4,6-Dicarboxylic Acid
pdb|1DVZ|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
O- Trifluoromethylphenyl Anthranilic Acid
pdb|1DVZ|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
O- Trifluoromethylphenyl Anthranilic Acid
pdb|1DVQ|A Chain A, Crystal Structure Of Human Transthyretin
pdb|1DVQ|B Chain B, Crystal Structure Of Human Transthyretin
pdb|1DVS|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Resveratrol
pdb|1DVS|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Resveratrol
pdb|1DVT|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Flurbiprofen
pdb|1DVT|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Flurbiprofen
pdb|1DVU|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Dibenzofuran- 4,6-Dicarboxylic Acid
pdb|1DVU|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Dibenzofuran- 4,6-Dicarboxylic Acid
Length = 124
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFV 65
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1
Peptide
Length = 217
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 458 KQYSKTQIISLTMIEYY--LCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQK 515
K SKT +L +I + + F+ Y + + +L Y L + P+WE+ N++
Sbjct: 50 KDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR 109
Query: 516 GGTWRIKCSKR 526
GG W I +K+
Sbjct: 110 GGRWLITLNKQ 120
>pdb|1FH2|A Chain A, Transthyretin Stability As A Key Factor In Amyloidogenesis
pdb|1FH2|B Chain B, Transthyretin Stability As A Key Factor In Amyloidogenesis
Length = 116
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 269 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
++ VH+ A D + FA+G +G LHGL +E +
Sbjct: 17 INVAMVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 57
>pdb|1ETA|1 Chain 1, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
pdb|1ETA|2 Chain 2, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
Length = 128
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 269 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
++ VH+ A D + FA+G +G LHGL +E +
Sbjct: 26 INVAMVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 66
>pdb|1F86|A Chain A, Transthyretin Thr119met Protein Stabilisation
pdb|1F86|B Chain B, Transthyretin Thr119met Protein Stabilisation
Length = 115
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 21 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 56
>pdb|1III|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-data Collected At Room Temperature
pdb|1III|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-data Collected At Room Temperature
pdb|1IIK|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-Data Collected At Cryo Temperature
pdb|1IIK|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-Data Collected At Cryo Temperature
Length = 127
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1X7S|A Chain A, The X-Ray Crystallographic Structure Of The Amyloidogenic
Variant Ttr Tyr78phe
pdb|1X7S|B Chain B, The X-Ray Crystallographic Structure Of The Amyloidogenic
Variant Ttr Tyr78phe
pdb|2B16|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Tyr78phe
pdb|2B16|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Tyr78phe
Length = 127
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1IJN|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
C10aY114C
pdb|1IJN|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
C10aY114C
Length = 127
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|3U2I|A Chain A, X-Ray Crystal Structure Of Human Transthyretin At Room
Temperature
pdb|3U2I|B Chain B, X-Ray Crystal Structure Of Human Transthyretin At Room
Temperature
pdb|3U2J|A Chain A, Neutron Crystal Structure Of Human Transthyretin
pdb|3U2J|B Chain B, Neutron Crystal Structure Of Human Transthyretin
Length = 117
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 20 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 55
>pdb|3FC8|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaome
pdb|3FC8|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaome
pdb|3FCB|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaoh
pdb|3FCB|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaoh
pdb|4ABQ|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-1
pdb|4ABQ|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-1
pdb|4ABU|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-2
pdb|4ABU|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-2
pdb|4ABV|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-3
pdb|4ABV|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-3
pdb|4ABW|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-6
pdb|4ABW|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-6
pdb|4AC2|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-7
pdb|4AC2|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-7
Length = 124
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|4DEU|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Naringenin
(Ttrwt:nar)
pdb|4DEU|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Naringenin
(Ttrwt:nar)
Length = 117
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 22 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 57
>pdb|1TTR|A Chain A, Transthyretin-V122I CARDIOMYOPATHIC MUTANT
pdb|1TTR|B Chain B, Transthyretin-V122I CARDIOMYOPATHIC MUTANT
Length = 127
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|3I9P|A Chain A, Crystal Structure Of Human Transthyretin - Wild Type
pdb|3I9P|B Chain B, Crystal Structure Of Human Transthyretin - Wild Type
pdb|3NEE|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With Gc-1
(Ttrwt:gc-1)
pdb|3NEE|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With Gc-1
(Ttrwt:gc-1)
pdb|3NEO|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With Gc-24
(Ttrwt:gc-24)
pdb|3NEO|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With Gc-24
(Ttrwt:gc-24)
pdb|4DER|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Apigenin
(Ttrwt:api)
pdb|4DER|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Apigenin
(Ttrwt:api)
pdb|4DES|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Chrysin
(Ttrwt:chr)
pdb|4DES|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Chrysin
(Ttrwt:chr)
pdb|4DET|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Kaempferol
(Ttrwt:kae)
pdb|4DET|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Kaempferol
(Ttrwt:kae)
Length = 116
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 21 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 56
>pdb|3CFM|A Chain A, Crystal Structure Of The Apo Form Of Human Wild-Type
Transthyretin
pdb|3CFM|B Chain B, Crystal Structure Of The Apo Form Of Human Wild-Type
Transthyretin
pdb|3CFN|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
1-Anilino-8- Naphthalene Sulfonate
pdb|3CFN|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
1-Anilino-8- Naphthalene Sulfonate
pdb|3CFQ|A Chain A, Crystal Structure Of Human Wild-Type Transthyretin In
Complex With Diclofenac
pdb|3CFQ|B Chain B, Crystal Structure Of Human Wild-Type Transthyretin In
Complex With Diclofenac
pdb|3CFT|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
1- Amino-5-Naphthalene Sulfonate
pdb|3CFT|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
1- Amino-5-Naphthalene Sulfonate
Length = 118
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 21 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 56
>pdb|3A4F|A Chain A, Crystal Structure Of Human Transthyretin (E54k)
pdb|3A4F|B Chain B, Crystal Structure Of Human Transthyretin (E54k)
Length = 127
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGKLHGLTTEEEFV 65
>pdb|1ZCR|A Chain A, Crystal Structure Of Human Transthyretin With Bound Iodide
pdb|1ZCR|B Chain B, Crystal Structure Of Human Transthyretin With Bound Iodide
pdb|1ZD6|A Chain A, Crystal Structure Of Human Transthyretin With Bound
Chloride
pdb|1ZD6|B Chain B, Crystal Structure Of Human Transthyretin With Bound
Chloride
Length = 128
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 31 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 66
>pdb|1BZE|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1BZE|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1FHN|A Chain A, Transthyretin Stability As A Key Factor In Amyloidogenesis
pdb|1FHN|B Chain B, Transthyretin Stability As A Key Factor In Amyloidogenesis
Length = 127
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1TTA|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTA|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TYR|A Chain A, Transthyretin Complex With Retinoic Acid
pdb|1TYR|B Chain B, Transthyretin Complex With Retinoic Acid
pdb|2ROY|A Chain A, Transthyretin (Also Called Prealbumin) Complex With
3',5'-Dinitro-N- Acetyl-L-Thyronine
pdb|2ROY|B Chain B, Transthyretin (Also Called Prealbumin) Complex With
3',5'-Dinitro-N- Acetyl-L-Thyronine
pdb|2ROX|A Chain A, Transthyretin (Also Called Prealbumin) Complex With
Thyroxine (T4)
pdb|2ROX|B Chain B, Transthyretin (Also Called Prealbumin) Complex With
Thyroxine (T4)
pdb|1BM7|A Chain A, Human Transthyretin (Prealbumin) Complex With Flufenamic
Acid (2-[[3-(Trifluoromethyl)phenyl]amino] Benzoic Acid)
pdb|1BM7|B Chain B, Human Transthyretin (Prealbumin) Complex With Flufenamic
Acid (2-[[3-(Trifluoromethyl)phenyl]amino] Benzoic Acid)
pdb|1BMZ|A Chain A, Human Transthyretin (Prealbumin)
pdb|1BMZ|B Chain B, Human Transthyretin (Prealbumin)
pdb|1E3F|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E3F|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E4H|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E4H|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E5A|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E5A|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1F41|A Chain A, Crystal Structure Of Human Transthyretin At 1.5a
Resolution
pdb|1F41|B Chain B, Crystal Structure Of Human Transthyretin At 1.5a
Resolution
pdb|1ICT|A Chain A, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|B Chain B, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|C Chain C, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|D Chain D, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|E Chain E, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|F Chain F, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|G Chain G, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|H Chain H, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1TT6|A Chain A, The Orthorhombic Crystal Structure Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TT6|B Chain B, The Orthorhombic Crystal Structure Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|A Chain A, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|B Chain B, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|C Chain C, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|D Chain D, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1U21|A Chain A, Transthyretin With Tethered Inhibitor On One Monomer.
pdb|1U21|B Chain B, Transthyretin With Tethered Inhibitor On One Monomer.
pdb|1Z7J|A Chain A, Human Transthyretin (Also Called Prealbumin) Complex With
3, 3',5,5'- Tetraiodothyroacetic Acid (T4ac)
pdb|1Z7J|B Chain B, Human Transthyretin (Also Called Prealbumin) Complex With
3, 3',5,5'- Tetraiodothyroacetic Acid (T4ac)
pdb|1Y1D|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal
pdb|1Y1D|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal
pdb|2B77|A Chain A, Human Transthyretin (ttr) Complexed With Diflunisal
Analogues- Ttr.2',
4'-dichloro-4-hydroxy-1,1'-biphenyl-3-carboxylic Acid
pdb|2B77|B Chain B, Human Transthyretin (ttr) Complexed With Diflunisal
Analogues- Ttr.2',
4'-dichloro-4-hydroxy-1,1'-biphenyl-3-carboxylic Acid
pdb|2B9A|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr.3',5'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2B9A|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr.3',5'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F7I|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr. 2',6'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F7I|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr. 2',6'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F8I|A Chain A, Human Transthyretin (Ttr) Complexed With Benzoxazole
pdb|2F8I|B Chain B, Human Transthyretin (Ttr) Complexed With Benzoxazole
pdb|2FBR|A Chain A, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (4 Carbon Linker)
pdb|2FBR|B Chain B, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (4 Carbon Linker)
pdb|2FLM|A Chain A, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (6 Carbon Linker)
pdb|2FLM|B Chain B, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (6 Carbon Linker)
pdb|2G5U|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4,4'-Dihydroxy-3,3',5,5'-Tetrachlorobiphenyl
pdb|2G5U|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4,4'-Dihydroxy-3,3',5,5'-Tetrachlorobiphenyl
pdb|2G9K|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-2',3,3',4',5-Pentachlorobiphenyl
pdb|2G9K|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-2',3,3',4',5-Pentachlorobiphenyl
pdb|2GAB|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-3,3',5,4'-Tetrachlorobiphenyl
pdb|2GAB|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-3,3',5,4'-Tetrachlorobiphenyl
pdb|2B15|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
Human Transthyretin
pdb|2B15|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
Human Transthyretin
pdb|2G4G|A Chain A, Crystal Structure Of Human Transthyretin At Ph 4.6
pdb|2G4G|B Chain B, Crystal Structure Of Human Transthyretin At Ph 4.6
pdb|3B56|A Chain A, Crystal Structure Of Transthyretin In Complex With 3,5-
Diiodosalicylic Acid
pdb|3B56|B Chain B, Crystal Structure Of Transthyretin In Complex With 3,5-
Diiodosalicylic Acid
pdb|2QGB|A Chain A, Human Transthyretin (Ttr) In Apo-Form
pdb|2QGB|B Chain B, Human Transthyretin (Ttr) In Apo-Form
pdb|2QGC|A Chain A, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethyl-4- Hydroxyphenyl)benzoxazole
pdb|2QGC|B Chain B, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethyl-4- Hydroxyphenyl)benzoxazole
pdb|2QGD|A Chain A, Human Transthyretin (Ttr) Complexed With 2-(3,5-Dibromo-4-
Hydroxyphenyl)benzoxazole
pdb|2QGD|B Chain B, Human Transthyretin (Ttr) Complexed With 2-(3,5-Dibromo-4-
Hydroxyphenyl)benzoxazole
pdb|2QGE|A Chain A, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethylphenyl) Benzoxazole
pdb|2QGE|B Chain B, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethylphenyl) Benzoxazole
pdb|3D2T|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
pdb|3D2T|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
pdb|3CBR|A Chain A, Crystal Structure Of Human Transthyretin (Ttr) At Ph3.5
pdb|3CBR|B Chain B, Crystal Structure Of Human Transthyretin (Ttr) At Ph3.5
pdb|3D7P|A Chain A, Crystal Structure Of Human Transthyretin (Ttr) At Ph 4.0
pdb|3D7P|B Chain B, Crystal Structure Of Human Transthyretin (Ttr) At Ph 4.0
pdb|3CN0|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dimethyl-4-
Hydroxystilbene
pdb|3CN0|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dimethyl-4-
Hydroxystilbene
pdb|3CN1|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxystilbene
pdb|3CN1|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxystilbene
pdb|3CN2|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxybiphenyl
pdb|3CN2|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxybiphenyl
pdb|3CN3|A Chain A, Human Transthyretin (Ttr) In Complex With 1,3-Dibromo-2-
Hydroxy-5-Phenoxybenzene
pdb|3CN3|B Chain B, Human Transthyretin (Ttr) In Complex With 1,3-Dibromo-2-
Hydroxy-5-Phenoxybenzene
pdb|3CN4|A Chain A, Human Transthyretin (Ttr) In Complex With
N-(3,5-Dibromo-4- Hydroxyphenyl)benzamide
pdb|3CN4|B Chain B, Human Transthyretin (Ttr) In Complex With
N-(3,5-Dibromo-4- Hydroxyphenyl)benzamide
pdb|3BSZ|A Chain A, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|B Chain B, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|C Chain C, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|D Chain D, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3GLZ|A Chain A, Human Transthyretin (Ttr) Complexed With(E)-3-(2-
(Trifluoromethyl)benzylideneaminooxy)propanoic Acid
(Inhibitor 11)
pdb|3GLZ|B Chain B, Human Transthyretin (Ttr) Complexed With(E)-3-(2-
(Trifluoromethyl)benzylideneaminooxy)propanoic Acid
(Inhibitor 11)
pdb|3GS0|A Chain A, Human Transthyretin (Ttr) Complexed With
(S)-3-(9h-Fluoren- 9-Ylideneaminooxy)-2-Methylpropanoic
Acid (Inhibitor 16)
pdb|3GS0|B Chain B, Human Transthyretin (Ttr) Complexed With
(S)-3-(9h-Fluoren- 9-Ylideneaminooxy)-2-Methylpropanoic
Acid (Inhibitor 16)
pdb|3GS4|A Chain A, Human Transthyretin (Ttr) Complexed With 3-(9h-Fluoren-9-
Ylideneaminooxy)propanoic Acid (Inhibitor 15)
pdb|3GS4|B Chain B, Human Transthyretin (Ttr) Complexed With 3-(9h-Fluoren-9-
Ylideneaminooxy)propanoic Acid (Inhibitor 15)
pdb|3GS7|A Chain A, Human Transthyretin (Ttr) Complexed With (E)-3-(2-
Methoxybenzylideneaminooxy)propanoic Acid (Inhibitor 13)
pdb|3GS7|B Chain B, Human Transthyretin (Ttr) Complexed With (E)-3-(2-
Methoxybenzylideneaminooxy)propanoic Acid (Inhibitor 13)
pdb|3ESN|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,6-Dimethylbenzamide
pdb|3ESN|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,6-Dimethylbenzamide
pdb|3ESO|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,5-Dichlorobenzamide
pdb|3ESO|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,5-Dichlorobenzamide
pdb|3ESP|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide
pdb|3ESP|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide
pdb|3A4D|A Chain A, Crystal Structure Of Human Transthyretin (Wild-Type)
pdb|3A4D|B Chain B, Crystal Structure Of Human Transthyretin (Wild-Type)
pdb|3IMR|A Chain A, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dichlorostyryl)phenol
pdb|3IMR|B Chain B, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dichlorostyryl)phenol
pdb|3IMS|A Chain A, Transthyretin In Complex With 2,6-Dibromo-4-(2,6-
Dichlorophenethyl)phenol
pdb|3IMS|B Chain B, Transthyretin In Complex With 2,6-Dibromo-4-(2,6-
Dichlorophenethyl)phenol
pdb|3IMT|A Chain A, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromophenol
pdb|3IMT|B Chain B, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromophenol
pdb|3IMU|A Chain A, Transthyretin In Complex With (E)-4-(3-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMU|B Chain B, Transthyretin In Complex With (E)-4-(3-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMV|A Chain A, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMV|B Chain B, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMW|A Chain A, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dimethoxystyryl)aniline
pdb|3IMW|B Chain B, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dimethoxystyryl)aniline
pdb|3KGU|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With
Genistein (Ttrwt:gen) Ph 7.5
pdb|3KGU|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With
Genistein (Ttrwt:gen) Ph 7.5
pdb|3IPB|A Chain A, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (11 Carbon Linker).
pdb|3IPB|B Chain B, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (11 Carbon Linker).
pdb|3IPE|A Chain A, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (7 Carbon Linker).
pdb|3IPE|B Chain B, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (7 Carbon Linker).
pdb|3M1O|A Chain A, Human Transthyretin (Ttr) Complexed With
2-((3,5-Dichloro-4- Hydroxyphenyl)amino)benzoic Acid
pdb|3M1O|B Chain B, Human Transthyretin (Ttr) Complexed With
2-((3,5-Dichloro-4- Hydroxyphenyl)amino)benzoic Acid
pdb|3P3R|A Chain A, Transthyretin In Complex With
(3,4-Dihydroxy-5-Nitrophenyl)(2- Fluorophenyl)methanone
pdb|3P3R|B Chain B, Transthyretin In Complex With
(3,4-Dihydroxy-5-Nitrophenyl)(2- Fluorophenyl)methanone
pdb|3P3S|A Chain A, Human Transthyretin (Ttr) Complexed With
(Z)-5-(3,5-Dibromo-4-
Hydroxybenzylidene)-Imino-1-Methylimidazolidin-4-One
pdb|3P3S|B Chain B, Human Transthyretin (Ttr) Complexed With
(Z)-5-(3,5-Dibromo-4-
Hydroxybenzylidene)-Imino-1-Methylimidazolidin-4-One
pdb|3P3T|A Chain A, Human Transthyretin (Ttr) Complexed With
4-(3-(2-Flourophenoxy) Propyl)-3,5-Dimethyl-1h-Pyrazole
pdb|3P3T|B Chain B, Human Transthyretin (Ttr) Complexed With
4-(3-(2-Flourophenoxy) Propyl)-3,5-Dimethyl-1h-Pyrazole
pdb|3P3U|A Chain A, Human Transthyretin (Ttr) Complexed With
5-(2-Ethoxyphenyl)-3- (Pyridin-4-Yl)-1,2,4-Oxadiazole
pdb|3P3U|B Chain B, Human Transthyretin (Ttr) Complexed With
5-(2-Ethoxyphenyl)-3- (Pyridin-4-Yl)-1,2,4-Oxadiazole
pdb|3TCT|A Chain A, Structure Of Wild-Type Ttr In Complex With Tafamidis
pdb|3TCT|B Chain B, Structure Of Wild-Type Ttr In Complex With Tafamidis
pdb|4ACT|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-17
pdb|4ACT|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-17
pdb|4AC4|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-18
pdb|4AC4|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-18
pdb|3W3B|A Chain A, Crystal Structure Of Wild-type Human Transthyretin
pdb|3W3B|B Chain B, Crystal Structure Of Wild-type Human Transthyretin
pdb|4IIZ|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Lumiracoxib
pdb|4IIZ|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Lumiracoxib
pdb|4IK6|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Lumiracoxib
pdb|4IK6|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Lumiracoxib
pdb|4IK7|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Indomethacin
pdb|4IK7|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Indomethacin
pdb|4IKI|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Indomethacin
pdb|4IKI|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Indomethacin
pdb|4IKJ|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKJ|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKK|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKK|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKL|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKL|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4FI6|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-
Benzenesulfonamide
pdb|4FI6|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-
Benzenesulfonamide
pdb|4FI7|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,
4-oxadiazol-2-yl)- Benzenesulfonamide
pdb|4FI7|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,
4-oxadiazol-2-yl)- Benzenesulfonamide
pdb|4FI8|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
4-bromo-3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-
Oxadiazol-2-yl)-benzenesulfonamide
pdb|4FI8|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
4-bromo-3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-
Oxadiazol-2-yl)-benzenesulfonamide
Length = 127
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2TRY|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|2TRY|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|4ANK|A Chain A, Crystallographic Study Of Novel Transthyretin Ligands
Exhibiting Negative-Cooperativity Between Two T4 Binding
Sites.
pdb|4ANK|B Chain B, Crystallographic Study Of Novel Transthyretin Ligands
Exhibiting Negative-Cooperativity Between Two T4 Binding
Sites.
pdb|4DEW|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Luteolin
(Ttrwt:lut)
pdb|4DEW|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Luteolin
(Ttrwt:lut)
Length = 147
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 50 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 85
>pdb|3I9I|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t - #2
pdb|3I9I|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t - #2
pdb|3TFB|A Chain A, Transthyretin Natural Mutant A25t
pdb|3TFB|B Chain B, Transthyretin Natural Mutant A25t
Length = 116
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 21 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 56
>pdb|2WQA|A Chain A, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|B Chain B, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|C Chain C, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|D Chain D, Complex Of Ttr And Rbp4 And Oleic Acid
Length = 129
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 32 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 67
>pdb|3CXF|A Chain A, Crystal Structure Of Transthyretin Variant Y114h
pdb|3CXF|B Chain B, Crystal Structure Of Transthyretin Variant Y114h
pdb|3DK2|A Chain A, Crystal Structure Of Transthyretin Variant Y114h At Acidic
Ph
pdb|3DK2|B Chain B, Crystal Structure Of Transthyretin Variant Y114h At Acidic
Ph
Length = 127
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1BZ8|A Chain A, Transthyretin (Del Val122)
pdb|1BZ8|B Chain B, Transthyretin (Del Val122)
Length = 126
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1SOK|A Chain A, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group P21212
pdb|1SOK|B Chain B, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group P21212
pdb|1SOQ|A Chain A, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|B Chain B, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|C Chain C, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|D Chain D, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
Length = 127
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1GKO|A Chain A, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|B Chain B, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|C Chain C, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|D Chain D, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|3DGD|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DID|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3GPS|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GRB|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRG|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
Length = 127
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1TTB|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTB|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1ETB|1 Chain 1, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
pdb|1ETB|2 Chain 2, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
Length = 127
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|3I9A|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t - #1
pdb|3I9A|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t - #1
pdb|3OZK|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Thyroxine (T4)
pdb|3OZK|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Thyroxine (T4)
pdb|3OZL|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Flufenamic Acid.
pdb|3OZL|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Flufenamic Acid
Length = 127
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2G3Z|A Chain A, Crystal Structure Of Transthyretin Mutant I84a At Low Ph
pdb|2G3Z|B Chain B, Crystal Structure Of Transthyretin Mutant I84a At Low Ph
pdb|2G4E|A Chain A, Crystal Structure Of Transthyretin Mutant I84a At Neutral
Ph
pdb|2G4E|B Chain B, Crystal Structure Of Transthyretin Mutant I84a At Neutral
Ph
Length = 127
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1X7T|A Chain A, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With
Protective Clinical Effects
pdb|1X7T|B Chain B, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With
Protective Clinical Effects
Length = 127
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2TRH|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|2TRH|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1BZD|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1BZD|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1QWH|A Chain A, A Covalent Dimer Of Transthyretin That Affects The Amyloid
Pathway
pdb|1QWH|B Chain B, A Covalent Dimer Of Transthyretin That Affects The Amyloid
Pathway
Length = 117
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 20 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 55
>pdb|3BT0|A Chain A, Crystal Structure Of Transthyretin Variant V20s
pdb|3BT0|B Chain B, Crystal Structure Of Transthyretin Variant V20s
Length = 127
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2G3X|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2G3X|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2NOY|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
pdb|2NOY|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
Length = 127
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2H4E|A Chain A, Crystal Structure Of Cys10 Sulfonated Transthyretin
pdb|2H4E|B Chain B, Crystal Structure Of Cys10 Sulfonated Transthyretin
pdb|3HJ0|A Chain A, Transthyretin In Complex With A Covalent Small Molecule
Kinetic Stabilizer
pdb|3HJ0|B Chain B, Transthyretin In Complex With A Covalent Small Molecule
Kinetic Stabilizer
Length = 127
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 274 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 309
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,011,043
Number of Sequences: 62578
Number of extensions: 867604
Number of successful extensions: 1917
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1781
Number of HSP's gapped (non-prelim): 90
length of query: 645
length of database: 14,973,337
effective HSP length: 105
effective length of query: 540
effective length of database: 8,402,647
effective search space: 4537429380
effective search space used: 4537429380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)