Query psy14235
Match_columns 645
No_of_seqs 392 out of 1811
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:51:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01793 cit_synth_euk citrat 100.0 5E-118 1E-122 967.5 40.7 426 30-456 2-427 (427)
2 cd06105 ScCit1-2_like Saccharo 100.0 1E-115 3E-120 949.6 41.2 426 32-458 1-426 (427)
3 cd06106 ScCit3_like Saccharomy 100.0 5E-112 1E-116 921.3 40.4 425 32-456 1-428 (428)
4 PRK09569 type I citrate syntha 100.0 1E-111 3E-116 920.1 41.0 429 31-461 2-432 (437)
5 KOG2617|consensus 100.0 1E-111 2E-116 883.7 31.6 431 27-462 22-452 (458)
6 cd06103 ScCS-like Saccharomyce 100.0 1E-109 3E-114 902.8 40.6 424 32-455 1-425 (426)
7 PLN02456 citrate synthase 100.0 7E-101 2E-105 840.4 36.6 407 26-459 28-447 (455)
8 cd06115 AthCS_per_like Arabido 100.0 2.5E-96 5E-101 796.4 36.3 385 47-458 7-406 (410)
9 COG0372 GltA Citrate synthase 100.0 1.4E-95 3E-100 782.4 34.5 369 60-460 9-384 (390)
10 cd06107 EcCS_AthCS-per_like Es 100.0 1.6E-94 3.4E-99 777.4 35.2 367 60-454 1-382 (382)
11 cd06116 CaCS_like Chloroflexus 100.0 1.9E-94 4.1E-99 777.3 35.4 367 60-458 1-379 (384)
12 TIGR01798 cit_synth_I citrate 100.0 1E-93 2.3E-98 776.4 35.5 378 47-458 17-410 (412)
13 PRK05614 gltA type II citrate 100.0 2.7E-93 5.8E-98 775.3 35.8 377 45-455 28-419 (419)
14 cd06109 BsCS-I_like Bacillus s 100.0 8.5E-93 1.8E-97 757.0 36.4 346 69-454 1-349 (349)
15 PRK12351 methylcitrate synthas 100.0 3.7E-92 8E-97 757.6 34.6 356 68-458 9-370 (378)
16 PRK14036 citrate synthase; Pro 100.0 9.2E-92 2E-96 755.3 36.0 359 68-459 5-369 (377)
17 cd06108 Ec2MCS_like Escherichi 100.0 1.3E-91 2.7E-96 750.5 35.2 353 69-459 1-359 (363)
18 PRK14032 citrate synthase; Pro 100.0 5.1E-91 1.1E-95 762.1 40.0 376 69-458 31-439 (447)
19 cd06117 Ec2MCS_like_1 Subgroup 100.0 1.2E-91 2.6E-96 751.9 34.2 353 70-458 2-361 (366)
20 cd06112 citrate_synt_like_1_1 100.0 2.5E-91 5.4E-96 752.0 35.6 359 69-458 3-368 (373)
21 PRK14035 citrate synthase; Pro 100.0 8.7E-91 1.9E-95 745.9 35.7 356 67-459 3-364 (371)
22 cd06114 EcCS_like Escherichia 100.0 3.3E-90 7.1E-95 748.4 35.4 358 68-454 28-400 (400)
23 PRK14034 citrate synthase; Pro 100.0 7.3E-90 1.6E-94 739.0 36.0 354 68-458 4-363 (372)
24 PRK14037 citrate synthase; Pro 100.0 7.5E-90 1.6E-94 740.5 36.1 358 67-458 4-369 (377)
25 cd06113 citrate_synt_like_1_2 100.0 1.2E-89 2.7E-94 745.1 37.4 369 73-454 10-406 (406)
26 cd06111 DsCS_like Cold-active 100.0 4.3E-87 9.2E-92 716.7 34.8 354 69-458 1-360 (362)
27 PRK12349 citrate synthase 3; P 100.0 1.1E-86 2.4E-91 715.1 34.7 353 69-457 7-366 (369)
28 cd06118 citrate_synt_like_1 Ci 100.0 1.6E-86 3.4E-91 712.9 35.4 352 69-452 1-358 (358)
29 PF00285 Citrate_synt: Citrate 100.0 8.3E-87 1.8E-91 714.9 27.7 348 70-448 1-356 (356)
30 TIGR01800 cit_synth_II 2-methy 100.0 8.1E-86 1.8E-90 708.9 34.8 355 69-459 1-361 (368)
31 cd06110 BSuCS-II_like Bacillus 100.0 1.5E-85 3.3E-90 704.6 35.3 350 69-454 1-356 (356)
32 PRK12350 citrate synthase 2; P 100.0 8.8E-86 1.9E-90 701.5 31.1 338 69-458 3-350 (353)
33 PRK14033 citrate synthase; Pro 100.0 3E-85 6.5E-90 704.9 35.0 356 67-458 9-370 (375)
34 cd06101 citrate_synt Citrate s 100.0 5.4E-70 1.2E-74 562.9 24.7 259 69-452 1-265 (265)
35 cd06102 citrate_synt_like_2 Ci 100.0 4.3E-64 9.3E-69 521.3 25.9 266 73-454 17-282 (282)
36 cd06099 CS_ACL-C_CCL Citrate s 100.0 1.1E-56 2.3E-61 450.6 18.4 208 234-452 1-213 (213)
37 PRK06224 citrate synthase; Pro 100.0 1.1E-55 2.4E-60 456.3 21.9 245 77-458 9-260 (263)
38 PLN02522 ATP citrate (pro-S)-l 100.0 5.9E-48 1.3E-52 433.5 24.9 182 252-448 401-599 (608)
39 cd06100 CCL_ACL-C Citryl-CoA l 100.0 2.1E-48 4.5E-53 394.3 18.9 209 231-449 9-220 (227)
40 KOG1670|consensus 100.0 3.9E-41 8.5E-46 328.3 5.9 132 461-602 57-196 (212)
41 PF01652 IF4E: Eukaryotic init 100.0 5.2E-34 1.1E-38 275.5 6.7 120 461-586 25-152 (165)
42 KOG1669|consensus 100.0 3.9E-34 8.5E-39 271.0 3.4 120 461-587 55-179 (208)
43 PTZ00040 translation initiatio 100.0 5.3E-33 1.2E-37 279.9 5.4 120 461-587 64-212 (233)
44 COG5053 CDC33 Translation init 100.0 1.1E-29 2.4E-34 243.8 5.1 132 462-602 62-202 (217)
45 KOG1254|consensus 99.5 7.9E-15 1.7E-19 158.5 8.1 185 249-448 390-591 (600)
46 cd06100 CCL_ACL-C Citryl-CoA l 97.6 0.0041 8.8E-08 63.7 18.5 71 94-175 1-77 (227)
47 KOG2617|consensus 81.8 0.47 1E-05 52.2 0.2 172 61-243 257-453 (458)
48 cd06099 CS_ACL-C_CCL Citrate s 72.6 12 0.00026 38.1 7.4 59 115-175 2-64 (213)
49 PRK14037 citrate synthase; Pro 57.8 30 0.00065 38.4 7.4 63 113-175 150-214 (377)
50 PRK14035 citrate synthase; Pro 48.6 40 0.00086 37.4 6.4 61 113-175 150-214 (371)
51 PRK12349 citrate synthase 3; P 48.0 51 0.0011 36.5 7.2 61 113-175 153-217 (369)
52 PRK14034 citrate synthase; Pro 47.8 42 0.00092 37.2 6.5 62 113-176 150-215 (372)
53 PF08939 DUF1917: Domain of un 45.1 25 0.00055 36.8 4.0 67 513-585 147-222 (243)
54 PRK14036 citrate synthase; Pro 44.6 53 0.0011 36.6 6.6 61 113-175 152-216 (377)
55 cd06112 citrate_synt_like_1_1 44.5 36 0.00077 37.8 5.3 61 113-175 151-215 (373)
56 PRK14033 citrate synthase; Pro 38.0 90 0.002 34.7 7.2 61 113-175 157-221 (375)
57 PRK12351 methylcitrate synthas 36.3 1E+02 0.0023 34.3 7.3 60 114-175 158-221 (378)
58 PTZ00096 40S ribosomal protein 35.4 28 0.00061 33.5 2.4 23 90-122 15-37 (143)
59 cd06111 DsCS_like Cold-active 35.1 1.1E+02 0.0023 33.9 7.2 61 113-175 147-211 (362)
60 PF07583 PSCyt2: Protein of un 34.0 42 0.00091 34.3 3.5 37 115-156 27-63 (208)
61 cd06108 Ec2MCS_like Escherichi 33.4 1.1E+02 0.0024 33.9 6.9 61 113-175 145-209 (363)
62 cd06113 citrate_synt_like_1_2 31.9 1.2E+02 0.0025 34.2 6.9 61 113-175 174-240 (406)
63 TIGR01800 cit_synth_II 2-methy 31.7 1.6E+02 0.0034 32.6 7.8 61 113-175 147-211 (368)
64 PRK04038 rps19p 30S ribosomal 31.4 37 0.0008 32.5 2.4 23 90-122 7-29 (134)
65 cd06117 Ec2MCS_like_1 Subgroup 29.8 1.5E+02 0.0033 32.9 7.2 61 113-175 148-212 (366)
66 cd06118 citrate_synt_like_1 Ci 29.4 1.5E+02 0.0032 32.7 7.0 60 114-175 148-211 (358)
67 PRK14032 citrate synthase; Pro 28.7 1.5E+02 0.0033 33.8 7.1 61 113-175 204-270 (447)
68 TIGR01025 rpsS_arch ribosomal 28.1 44 0.00096 32.0 2.4 23 90-122 5-27 (135)
69 cd06110 BSuCS-II_like Bacillus 27.7 1.6E+02 0.0035 32.4 7.0 61 113-175 147-211 (356)
70 PRK13890 conjugal transfer pro 27.3 2.5E+02 0.0054 26.0 7.2 43 91-141 15-58 (120)
71 PF03708 Avian_gp85: Avian ret 25.0 1.3E+02 0.0029 30.9 5.2 118 429-557 52-182 (256)
72 cd06109 BsCS-I_like Bacillus s 24.8 1.9E+02 0.0041 31.9 6.9 61 113-175 136-200 (349)
73 PRK08558 adenine phosphoribosy 23.1 1.6E+02 0.0036 30.5 5.7 56 95-158 24-80 (238)
74 PLN00179 acyl- [acyl-carrier p 22.5 1.1E+03 0.023 26.7 11.9 83 273-366 231-314 (390)
75 cd06101 citrate_synt Citrate s 22.0 3.1E+02 0.0067 29.0 7.6 77 94-175 36-116 (265)
76 COG0177 Nth Predicted EndoIII- 21.6 9E+02 0.019 24.9 11.8 156 161-357 27-195 (211)
77 PF00285 Citrate_synt: Citrate 21.0 2.8E+02 0.0061 30.5 7.3 61 113-175 147-213 (356)
78 KOG0292|consensus 20.9 1.4E+02 0.0031 36.7 5.1 107 519-636 23-144 (1202)
No 1
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=4.7e-118 Score=967.46 Aligned_cols=426 Identities=73% Similarity=1.220 Sum_probs=410.9
Q ss_pred hhHHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCC
Q psy14235 30 TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKG 109 (645)
Q Consensus 30 ~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~ 109 (645)
++||++++++||.+++++++||++||+++||++|+|++++||||+++++|++|+|||++||+||||+|+||++.+|++.+
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~ 81 (427)
T TIGR01793 2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG 81 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999987777777
Q ss_pred CCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCC
Q psy14235 110 GEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH 189 (645)
Q Consensus 110 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~ 189 (645)
++++.||||+||||||+|||++|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|+.++.|+++|+.+.+
T Consensus 82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~ 161 (427)
T TIGR01793 82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH 161 (427)
T ss_pred cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCc
Q psy14235 190 KSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNV 269 (645)
Q Consensus 190 k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~ 269 (645)
+.++|++.++++++|||++|+|+|++||+.+++|++ ++|++++||++||++||+++++.++++||++|||||||||+|+
T Consensus 162 ~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~-i~p~~~l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~Na 240 (427)
T TIGR01793 162 KTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQS-ISIDDSKDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNV 240 (427)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccc
Confidence 888999999999999999999999999988889998 7899999999999999988889999999999999999998999
Q ss_pred chhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCC
Q psy14235 270 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVL 349 (645)
Q Consensus 270 ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vy 349 (645)
||||+||||||++|||+|++|||+||+||+||||||+|++||+++.+++|.+++++++++||++++++|++|||||||||
T Consensus 241 STfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vy 320 (427)
T TIGR01793 241 SAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVL 320 (427)
T ss_pred hhHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999988788777899999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchh
Q psy14235 350 RKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRAL 429 (645)
Q Consensus 350 k~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~ 429 (645)
|.+|||+.+|++++.++.+++++++++++++++++++++++++.||++||||||+|+|+++||||+.++||++|++||++
T Consensus 321 r~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~lGip~~~~~t~lFavsR~~ 400 (427)
T TIGR01793 321 RKTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYYGLTEARYYTVLFGVSRAL 400 (427)
T ss_pred CCCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHcCCCchhhhhhHhhhhccc
Confidence 99999999999999998889999999999999999999999999999999999999999999998668999999999999
Q ss_pred hhhHHHHHHHHhCCCCCCCCcccchhh
Q psy14235 430 GVLASLIWDRALGLPIERPKSLSTNDL 456 (645)
Q Consensus 430 GwlAH~ie~~~~~~pI~RPrs~y~~~~ 456 (645)
||+||++||++.+.||+||+|++++++
T Consensus 401 Gw~AH~ieq~~~~~~I~RP~s~~~~~~ 427 (427)
T TIGR01793 401 GILSQLIWDRALGLPLERPKSVSTEWL 427 (427)
T ss_pred hHHHHHHHHHHcCCCccCCcccccccC
Confidence 999999999999999999999999853
No 2
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=1.2e-115 Score=949.64 Aligned_cols=426 Identities=81% Similarity=1.303 Sum_probs=408.4
Q ss_pred HHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCCC
Q psy14235 32 LKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGE 111 (645)
Q Consensus 32 lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~~ 111 (645)
|||+++++||.+++++++|+++||++++|++|+|++++||||+++++|+||+|||++||+||||+|+||++++|++.+++
T Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (427)
T cd06105 1 LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAPGGE 80 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCcceeeeecCcccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhCccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998766778
Q ss_pred CCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCC
Q psy14235 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKS 191 (645)
Q Consensus 112 ~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~ 191 (645)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+++|+|+++|+++.++.
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~ 160 (427)
T cd06105 81 EPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKS 160 (427)
T ss_pred ccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhcccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999998877888788777
Q ss_pred cChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCcch
Q psy14235 192 KYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSA 271 (645)
Q Consensus 192 ~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~ST 271 (645)
++|++.++++++|||++|+|+|++||++ +.|.++++|++++||++||++||++.++..+++||++|||||||||+|+||
T Consensus 161 ~~~~~~~~~~~~LiAk~p~i~A~~yr~~-~~g~~~~~pd~~ls~a~Nfl~Ml~~~~~~~~~~l~~~lvLhADHeg~NaST 239 (427)
T cd06105 161 KYWEYVYEDSMDLIAKLPCVAAKIYRNL-YRGGKIIAIDSNLDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSA 239 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHhhhccccCccchH
Confidence 8899999999999999999999999963 357788899999999999999999878899999999999999999889999
Q ss_pred hhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCC
Q psy14235 272 HTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRK 351 (645)
Q Consensus 272 ~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~ 351 (645)
||+|+||||++|||+|++|||+||+||+|||||++|++||.++.+++|.+++++++++||++.+++|++||||||||||.
T Consensus 240 faarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~ 319 (427)
T cd06105 240 HTTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRK 319 (427)
T ss_pred HHHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999998888877788999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhh
Q psy14235 352 TDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGV 431 (645)
Q Consensus 352 ~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~Gw 431 (645)
.|||+++|++++.++.+++++++++++++++++++++++++.+|++||||||||+++++||||+.++||+||++||++||
T Consensus 320 ~DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~lGip~~~~ft~lFa~sR~~GW 399 (427)
T cd06105 320 TDPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGV 399 (427)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHcCCCchhhhHHHHHHHHHHHH
Confidence 99999999999999988999999999999999998899999999999999999999999999965899999999999999
Q ss_pred hHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 432 LASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 432 lAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+||++||++.+.||+||+|+|++++++
T Consensus 400 ~AH~~Eq~~~~~~I~RP~s~~~~~~~~ 426 (427)
T cd06105 400 LSQLIWDRALGLPLERPKSVSTDGLEK 426 (427)
T ss_pred HHHHHHHHhCCCCccCCcchhHHHHhh
Confidence 999999999888999999999998875
No 3
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=5.4e-112 Score=921.28 Aligned_cols=425 Identities=57% Similarity=1.018 Sum_probs=395.2
Q ss_pred HHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCCC
Q psy14235 32 LKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGE 111 (645)
Q Consensus 32 lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~~ 111 (645)
||++++++||.+++++++|+++||+++||++|++++.+||||+++++|++|+||+++|++||||+|+||++++|+..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (428)
T cd06106 1 LKEALKEVIPAKREQLKKLKAEYGETVVGDVKVSNVLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG 80 (428)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeeeeeeHHHhcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998754444
Q ss_pred CCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCC
Q psy14235 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKS 191 (645)
Q Consensus 112 ~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~ 191 (645)
+..||||+||||+|+|||++|+++|+++|.+++.+|+.+.++|+++|+++|||++|+++|++|+.++.|..+|+.+..+.
T Consensus 81 ~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~ 160 (428)
T cd06106 81 EMLPESMLWLLLTGKVPTFEQARGLSKELAERGKLPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKT 160 (428)
T ss_pred CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccc
Confidence 33459999999999999999999999999999999999999999999999999999999999998887776677666655
Q ss_pred cChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCC-CChHHHHHHHHHHHHhccCCCCCcc
Q psy14235 192 KYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGF-DNHQFTELMRLYLTIHSDHEGGNVS 270 (645)
Q Consensus 192 ~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~-~~~~~~~~l~~~LiLhADHeg~n~S 270 (645)
++|++.++++++|||++|+|+|++||+...+|.++.+|++++||++|||+||+. +++.++++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~~rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ls~a~NFL~Mlg~~p~~~~~~~l~~~LiL~ADHeg~NaS 240 (428)
T cd06106 161 EYWEPTLEDSLNLIARLPALAARIYRNVYGEGHGLGKIDPEVDWSYNFTSMLGYGDNLDFVDLLRLYIALHGDHEGGNVS 240 (428)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHhhhcccCCccch
Confidence 788999999999999999999999997543455677799999999999999953 3678899999999999999988999
Q ss_pred hhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCC
Q psy14235 271 AHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLR 350 (645)
Q Consensus 271 T~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk 350 (645)
|||+||||||++|||+|++|||+||+||+|||||++|++||+++.+++|++.+++++++||++.+++|++||||||||||
T Consensus 241 TfaarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk 320 (428)
T cd06106 241 AHTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLR 320 (428)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886556799999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhC--CCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecch
Q psy14235 351 KTDPRYTCQREFAQKHL--PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRA 428 (645)
Q Consensus 351 ~~DPRa~~L~~~a~~~~--~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~ 428 (645)
..|||+++|+++++++. ..+++++++++++++++++++++++.|+++||||||+|+++++||||+.++||++|++||+
T Consensus 321 ~~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~lFaisR~ 400 (428)
T cd06106 321 KPDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYHYGIREFLYYTVIFGVSRA 400 (428)
T ss_pred CCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHcCCChhhcchHHHHHHHH
Confidence 99999999999999874 3579999999999999888888899999999999999999999999975789999999999
Q ss_pred hhhhHHHHHHHHhCCCCCCCCcccchhh
Q psy14235 429 LGVLASLIWDRALGLPIERPKSLSTNDL 456 (645)
Q Consensus 429 ~GwlAH~ie~~~~~~pI~RPrs~y~~~~ 456 (645)
+||+||++||++.+.||+||+|++++++
T Consensus 401 ~GW~AHi~eq~~~~~~I~RP~s~~~~~~ 428 (428)
T cd06106 401 LGPLTQLVWDRILGLPIERPKSLSLEGL 428 (428)
T ss_pred HHHHHHHHHHHhCCCCCcCCCccccccC
Confidence 9999999999998889999999999853
No 4
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=1.4e-111 Score=920.06 Aligned_cols=429 Identities=53% Similarity=0.929 Sum_probs=404.8
Q ss_pred hHHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCC
Q psy14235 31 DLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGG 110 (645)
Q Consensus 31 ~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~ 110 (645)
+||++++++||.+++++++||+.||+++||++|+|++.+||||+++.+|+||+|||++||+||||+|+||++++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~ 81 (437)
T PRK09569 2 QLKETLKQKIEEHRPRTTRLVKEFGSVVIDEVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGS 81 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeeeHhhhcccccCCeecceeceeecCCCceeECCccHHHHHhhCcccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred CCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCC-CC
Q psy14235 111 EEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG-VH 189 (645)
Q Consensus 111 ~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g-~~ 189 (645)
.+++||||+||||||+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+++|.|+..|+++ .+
T Consensus 82 ~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~ 161 (437)
T PRK09569 82 EYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFN 161 (437)
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccccccc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999998888766 55
Q ss_pred CCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCc
Q psy14235 190 KSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNV 269 (645)
Q Consensus 190 k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~ 269 (645)
+.++|+..++++++|||++|+|+|++||+. ..|.++++|++++||++||++||++. +..+++||++|||||||||+|+
T Consensus 162 ~~~~~~~~~~~~~rliA~~p~i~A~~yr~~-~~g~~~~~p~~~ls~a~NFl~Ml~~~-~~~~~~l~~~LiL~ADHe~~na 239 (437)
T PRK09569 162 KMDAWEYMYEDASDLVARIPVIAAYIYNLK-YKGDKQIPSDPELDYGANFAHMIGQP-KPYKDVARMYFILHSDHESGNV 239 (437)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCCcCHHHHHHHHhcCC-chHHHHHHHHHhhhhccCCCcc
Confidence 567889999999999999999999999974 24666789999999999999999875 5668999999999999998899
Q ss_pred chhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhcCCcccccCCCC
Q psy14235 270 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVG-DNVSEEKLKEFIWNTLKSGQVVPGYGHAV 348 (645)
Q Consensus 270 ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig-~~~s~~~i~~~v~~~l~~g~~IpGFGH~V 348 (645)
||||+|+||||++|||+|++|||+||+||+|||||++|++||+++.+++| ..++++++++||++.+++|++||||||||
T Consensus 240 STfaaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrv 319 (437)
T PRK09569 240 SAHTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAV 319 (437)
T ss_pred hHHHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999987775 33468999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecch
Q psy14235 349 LRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRA 428 (645)
Q Consensus 349 yk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~ 428 (645)
||..|||+++|+++++++.+++++++++++++++++++++++++.|+++||||||+|+++++||||+.++||++|++||+
T Consensus 320 yk~~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~lGip~~~~~t~lFaisR~ 399 (437)
T PRK09569 320 LRKTDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYTVLFGVGRA 399 (437)
T ss_pred CCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHHcCCCchhhhHHHHHHHHH
Confidence 99999999999999999988899999999999999888888999999999999999999999999855899999999999
Q ss_pred hhhhHHHHHHHHhCCCCCCCCcccchhhHhhhc
Q psy14235 429 LGVLASLIWDRALGLPIERPKSLSTNDLVKQYS 461 (645)
Q Consensus 429 ~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~vn 461 (645)
+||+||++||+..+.||+||+++|+|++.+.++
T Consensus 400 ~Gw~AH~iEq~~~~~~i~RP~~~Y~G~~~~~~~ 432 (437)
T PRK09569 400 LGVMANITWDRGLGYAIERPKSVTTEMLEKWAA 432 (437)
T ss_pred HHHHHHHHHHHhCCCCccCCccccchHHHHHHh
Confidence 999999999998887899999999999988763
No 5
>KOG2617|consensus
Probab=100.00 E-value=9.7e-112 Score=883.70 Aligned_cols=431 Identities=65% Similarity=1.037 Sum_probs=419.1
Q ss_pred CcchhHHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCC
Q psy14235 27 DASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPK 106 (645)
Q Consensus 27 ~~~~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~ 106 (645)
++..+||++|++.||+++++++.++++|| ++|.||+++++|||||++.+.||+|++|+++||+|||++|+||+..+|+
T Consensus 22 ~~~~~LK~~l~~~ip~~~~~~k~~~~ehG--~vg~v~i~~i~gGmrg~~~~~~e~s~Ld~~~gI~frg~~i~e~q~~lp~ 99 (458)
T KOG2617|consen 22 ISAATLKGNLAIVIPRTGDEYKKFVSEHG--TVGNVTLKKIYGGMRGKGLLLWETSVLDPEEGIRFRGGDIPECQKRLPP 99 (458)
T ss_pred cccccHHHHHHhhChhhHHHhhhhHhhcC--cccceeHHHhhcccCCCCceeecCcccchhhCeeecCCCHHHHHhhCCC
Confidence 34455999999999999999999999999 5699999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcC
Q psy14235 107 AKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYND 186 (645)
Q Consensus 107 ~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~ 186 (645)
++++.|++||+++|||+||++||++|+++++.+|++|+.+|++|.++|+++|+++|||+++.+++++|+.+++|+++|..
T Consensus 100 ~~~~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay~~ 179 (458)
T KOG2617|consen 100 AEEGAEPLPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSMPKDLHPMAQLAAAVLALKIFSPFAKAYLR 179 (458)
T ss_pred CccCCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhCCcccchHHHHHHHHHhccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCC
Q psy14235 187 GVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEG 266 (645)
Q Consensus 187 g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg 266 (645)
|++|.+||++++||+++|||++|+|+|++|++.+++|.+ .|++++||++||++|++..+++++++||+|++|||||||
T Consensus 180 G~~k~~yw~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~--~~~~~~dys~Nf~~mlg~~~~~f~~lmrly~~iHadHE~ 257 (458)
T KOG2617|consen 180 GIGKYKYWQYTYEDCLVLIAKLPTIAAAIYRNIYADGIP--KPDPNLDYSANFARMLGSRQPDFAQLMRLYVGIHADHEG 257 (458)
T ss_pred ccchhhcccccHHHHHHHHHhccHHHHHHHHHHhcCCCC--CCCcccchhHhHHHHHccCChHHHHHHHHeeeeeccccc
Confidence 999999999999999999999999999999999999865 359999999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCC
Q psy14235 267 GNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGH 346 (645)
Q Consensus 267 ~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH 346 (645)
+|+|+||.|+++|++ |||.|++||+++|+||+||+|||+|++||..+.++||++.+.|++++|+|+++++|++||||||
T Consensus 258 gnVsAh~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGH 336 (458)
T KOG2617|consen 258 GNVSAHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGH 336 (458)
T ss_pred CcHHHHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchhhhhHhhHHhhccccccccccc
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeec
Q psy14235 347 AVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVS 426 (645)
Q Consensus 347 ~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavs 426 (645)
+|||++|||+.+++++|.+++++|++++++.++++++|.+|+|++|.||+|||||+|||++++++|+++.-|||+||++|
T Consensus 337 avlr~tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk~knp~PNVD~~SGvll~~yGl~e~~fyTVLFgVs 416 (458)
T KOG2617|consen 337 AVLRKTDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGKVKNPYPNVDAHSGVLLQYYGLPELFFYTVLFGVS 416 (458)
T ss_pred ccccCCCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcccCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877779999999
Q ss_pred chhhhhHHHHHHHHhCCCCCCCCcccchhhHhhhcc
Q psy14235 427 RALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSK 462 (645)
Q Consensus 427 R~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~vnl 462 (645)
|++|.++|++|+|+.+.||+||+|.||+.+.+.++.
T Consensus 417 Ra~Gvlsqliw~ralg~pieRPks~~t~~~~~~~~~ 452 (458)
T KOG2617|consen 417 RALGVLSQLIWDRALGLPIERPKSVSTDWLHRFTNM 452 (458)
T ss_pred hhHHHHHHHHHHHHhCCcccCccccchHHHHHHHHH
Confidence 999999999999999999999999999999987654
No 6
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=1.4e-109 Score=902.78 Aligned_cols=424 Identities=73% Similarity=1.233 Sum_probs=400.6
Q ss_pred HHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCCC
Q psy14235 32 LKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGE 111 (645)
Q Consensus 32 lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~~ 111 (645)
|||+++++||.++++++.|++.||+++++++|++++.+||+|+++.+|+||+|||++|++||||+|+||++++|+++++.
T Consensus 1 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (426)
T cd06103 1 LKDKLAELIPKKQARIKELRKKYGNTKLGQITVDQVIGGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGG 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccccchhhhccCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999988766555
Q ss_pred CCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCC-CCC
Q psy14235 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG-VHK 190 (645)
Q Consensus 112 ~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g-~~k 190 (645)
+++||||+||||+|+|||++|+++|+++|.+++.+|+.+.++++++|+++|||++|+++|++|+++++|++.|+++ .++
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 160 (426)
T cd06103 81 EPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINK 160 (426)
T ss_pred cCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999988887777665 555
Q ss_pred CcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCcc
Q psy14235 191 SKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVS 270 (645)
Q Consensus 191 ~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~S 270 (645)
.++|+..++++++|||++|+|+|++||+.++.|+++++|+++++|++||++||++.++..+++||++|||||||||+|+|
T Consensus 161 ~~~~~~~~~~a~~liA~~p~I~A~~yr~~~~~g~~~~~p~~~ls~aeNfl~ml~~~~~~~~~~l~~~LiL~ADHe~~NaS 240 (426)
T cd06103 161 TTYWEYVYEDAMDLIAKLPVVAAKIYRRKYRKGGEIGAIDSKLDWSANFAHMLGYEDEEFTDLMRLYLTLHSDHEGGNVS 240 (426)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCcCHHHHHHHHhCCCCHHHHHHHHHHHhhhhccCCccch
Confidence 67789999999999999999999999976446888889999999999999999876788899999999999999988999
Q ss_pred hhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCC
Q psy14235 271 AHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLR 350 (645)
Q Consensus 271 T~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk 350 (645)
|||+|+||||++|||+|++|||+||+||+|||||++|++||+++.+++|++.+++++++||++.+++|++||||||||||
T Consensus 241 TfaaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk 320 (426)
T cd06103 241 AHTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLR 320 (426)
T ss_pred HHHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999888886667899999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhh
Q psy14235 351 KTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALG 430 (645)
Q Consensus 351 ~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~G 430 (645)
..|||+++|+++++++...++++++++++++++.++++++++.|+++||||||+|+++++||||+.++||++|++||++|
T Consensus 321 ~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~lGip~~~~ft~lFa~sR~~G 400 (426)
T cd06103 321 KTDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQHYGMTEPQYYTVLFGVSRALG 400 (426)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHHcCCChhhhhhHHHhHhhcch
Confidence 99999999999999998888999999999999988878888999999999999999999999985589999999999999
Q ss_pred hhHHHHHHHHhCCCCCCCCcccchh
Q psy14235 431 VLASLIWDRALGLPIERPKSLSTND 455 (645)
Q Consensus 431 wlAH~ie~~~~~~pI~RPrs~y~~~ 455 (645)
|+||++||++.+.+|+||+|++|+.
T Consensus 401 w~AH~~Eq~~~~~~i~RP~s~~~~~ 425 (426)
T cd06103 401 VLAQLVWSRALGLPIERPKSMSTEG 425 (426)
T ss_pred HHHHHHHHHhCCCCCCCCCcccccc
Confidence 9999999999998999999999874
No 7
>PLN02456 citrate synthase
Probab=100.00 E-value=7.4e-101 Score=840.39 Aligned_cols=407 Identities=39% Similarity=0.619 Sum_probs=377.8
Q ss_pred cCcchhHHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhC
Q psy14235 26 TDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVL 104 (645)
Q Consensus 26 ~~~~~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~ 104 (645)
+.+.+++|..+.+.+|+++..+++|++ +++.+|.+||| +||+|+.++.|+||+|||++|+ +||||+|+||+++
T Consensus 28 ~r~g~~~~~~i~~~~~~~~~~~~~l~~--~~~~~g~~~~d---~Gl~~~~~~~s~IS~iDg~~G~L~YRGy~I~dLa~~- 101 (455)
T PLN02456 28 NRTGKDYESPLSELGPVQAERLKKIKA--GKDDLGLKTVD---PGYRNTAPVLSEISLIDGDEGILRFRGYPIEELAEK- 101 (455)
T ss_pred CCCCcEEEEehhccCCcccchhhhccc--CcCccCCEecC---cccCCceeeeeeceEEeCCCCEEEECCccHHHHHhc-
Confidence 345678999999999999999999988 77788999999 5788889999999999999996 9999999999998
Q ss_pred CCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhh
Q psy14235 105 PKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAY 184 (645)
Q Consensus 105 p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay 184 (645)
.+||||+||||+|+|||++|+++|+++|.+++.+|+++.+++++||+++|||++|+++|++|+++++++..|
T Consensus 102 --------~~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~ 173 (455)
T PLN02456 102 --------SPFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAY 173 (455)
T ss_pred --------CCHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhh
Confidence 479999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCC-------CChHHHHHHHHH
Q psy14235 185 NDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGF-------DNHQFTELMRLY 257 (645)
Q Consensus 185 ~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~ 257 (645)
..|.++..+|+..++++++|||++|+|+|++||+ +.|.+++.|++++||++||++||++ +++..+++||++
T Consensus 174 ~~g~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~--~~g~~~~~P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~ 251 (455)
T PLN02456 174 LRGQHKYKSWEVRDEDIVRLIGKLPTLAAAIYRR--MYGRGPVIPDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLY 251 (455)
T ss_pred hcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence 8887776789999999999999999999999997 4688888899999999999999987 578899999999
Q ss_pred HHHhccCCCCCcchhhhhhhh-ccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q psy14235 258 LTIHSDHEGGNVSAHTVHLVG-SALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLK 336 (645)
Q Consensus 258 LiLhADHeg~n~ST~aaRvva-St~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~ 336 (645)
|||||||| +|+|||++|+++ ||++|||+|++|||+||+||+|||||++|++||++| | +++++++||++.++
T Consensus 252 LiLhADHe-~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei----~---~~~~v~~~v~~~l~ 323 (455)
T PLN02456 252 FIIHADHE-GGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEI----G---TVENIPEYVEGVKN 323 (455)
T ss_pred HeeeccCC-CCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHh----C---CHHHHHHHHHHHHh
Confidence 99999999 999999999998 999999999999999999999999999999999877 4 46899999999999
Q ss_pred cCCcccccCCCCCCCCCccHHHHHHHHHhh---CCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCC
Q psy14235 337 SGQVVPGYGHAVLRKTDPRYTCQREFAQKH---LPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGL 413 (645)
Q Consensus 337 ~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~---~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGl 413 (645)
+|++||||||||||..|||+++|+++|+++ .+++++++++.++|+++ +.+++++.|++|||||||+|+|+++|||
T Consensus 324 ~~~~l~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~--~~~~~~~~r~l~pNVDfysg~l~~~lGi 401 (455)
T PLN02456 324 SKKVLPGFGHRVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVA--LLDEYFKVRKLYPNVDFYSGVLLRALGF 401 (455)
T ss_pred CCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHHhcCCCCCCcCcHHHHHHHHHHcCc
Confidence 999999999999999999999999999966 46899999999999987 3367899999999999999999999999
Q ss_pred CCccccceeeeecchhhhhHHHHHHHHhC-CCCCCCCcccchhhHhh
Q psy14235 414 KEMNYYTVLFGVSRALGVLASLIWDRALG-LPIERPKSLSTNDLVKQ 459 (645)
Q Consensus 414 p~~~~~t~lFavsR~~GwlAH~ie~~~~~-~pI~RPrs~y~~~~~~~ 459 (645)
|. ++||++|++||++||+||++||...+ .+|+||+|+|+|+..+.
T Consensus 402 p~-~~~t~lFaisR~~Gw~AH~~E~~~~~~~ri~RP~~~Y~G~~~~~ 447 (455)
T PLN02456 402 PE-EFFTVLFAVSRAAGYLSQWDEALGLPDERIMRPKQVYTGEWLRH 447 (455)
T ss_pred Ch-hhccchhhhhhHHHHHHHHHHHHhCCcccccCCCccccCCCccc
Confidence 95 99999999999999999987777663 36999999999976553
No 8
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=2.5e-96 Score=796.35 Aligned_cols=385 Identities=26% Similarity=0.412 Sum_probs=345.1
Q ss_pred HHHhHhhhC---CcccceEEecccccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14235 47 VKNFRKNYG---STKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (645)
Q Consensus 47 ~~~l~~~~g---~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LL 122 (645)
..||++++. ++ |..++|+ ||+|+.+..|+||+|||++|+ +||||+|+||+++ .+||||+|||
T Consensus 7 ~~d~~~~~~~~~~~--g~~~~~~---Gl~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~---------~~feEv~~LL 72 (410)
T cd06115 7 ATDFKKIKAGKDDK--GLRLYDP---GYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEK---------STFLEVAYLL 72 (410)
T ss_pred eeeHHHhcCCcccC--CCcccCC---ccCCceEEEeeCeeEeCCCCeEEECCccHHHHHhc---------CCHHHHHHHH
Confidence 457788877 66 8899876 678889999999999999995 9999999999997 4799999999
Q ss_pred hhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHH
Q psy14235 123 VTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 202 (645)
Q Consensus 123 l~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~ 202 (645)
|+|+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.+++....-..+.+-....+...++++
T Consensus 73 l~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 152 (410)
T cd06115 73 IYGNLPTKSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYKNKQVRDKQIV 152 (410)
T ss_pred HcCCCcCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCccccccccccccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876532100011110012466788999
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCC-------ChHHHHHHHHHHHHhccCCCCCcchhhhh
Q psy14235 203 DLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVH 275 (645)
Q Consensus 203 ~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~-------~~~~~~~l~~~LiLhADHeg~n~ST~aaR 275 (645)
+|||++|+|+|++||+ +.|++++.|+++++|++|||+||++. ++..+++||++|||||||| +|+||||+|
T Consensus 153 rliA~~p~i~A~~~r~--~~g~~~~~p~~~ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~-~naSTfaar 229 (410)
T cd06115 153 RILGKAPTIAAAAYRR--RAGRPPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHE-MNCSTAAVR 229 (410)
T ss_pred HHHHHHHHHHHHHHHH--HcCCCCcCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccC-CCchHHHHH
Confidence 9999999999999996 57888999999999999999999863 5688999999999999998 999999999
Q ss_pred hhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCcc
Q psy14235 276 LVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPR 355 (645)
Q Consensus 276 vvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPR 355 (645)
++|||++|||+|++|||+||+||+|||||++|++||+++ + +++++++||++.+++|++||||||||||..|||
T Consensus 230 v~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvYk~~DPR 302 (410)
T cd06115 230 HLASSGVDVYTAVAGAVGALYGPLHGGANEAVLRMLAEI----G---TVENIPAFIEGVKNRKRKLSGFGHRVYKNYDPR 302 (410)
T ss_pred HHHhcCCCHHHHHHHHHhhccCCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCcc
Confidence 999999999999999999999999999999999999876 3 468999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC---CCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhh
Q psy14235 356 YTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVL 432 (645)
Q Consensus 356 a~~L~~~a~~~~---~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~Gwl 432 (645)
+++|+++++++. ++++++++++++|+++.+ +++++.|+++||||||+|+|+++||||. ++||++|++||++||+
T Consensus 303 a~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNVD~ysa~l~~~lG~p~-~~~t~lFa~sR~~Gw~ 379 (410)
T cd06115 303 AKIIKKLADEVFEIVGKDPLIEIAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRAMGFPT-DFFPVLFAIPRMAGYL 379 (410)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHh--hhhhcccCCCCChHHHHHHHHHHcCCCh-HhhhhHHHHHhhhhHH
Confidence 999999999874 467999999999998866 5678889999999999999999999986 8999999999999999
Q ss_pred HHHHHHHHhC-CCCCCCCcccchhhHh
Q psy14235 433 ASLIWDRALG-LPIERPKSLSTNDLVK 458 (645)
Q Consensus 433 AH~ie~~~~~-~pI~RPrs~y~~~~~~ 458 (645)
||++||...+ .+|+||++.|+|+..+
T Consensus 380 AH~~Eq~~~~~~~i~RP~~~Y~G~~~~ 406 (410)
T cd06115 380 AHWRESLDDPDTKIMRPQQLYTGVWLR 406 (410)
T ss_pred HHHHHHHhCCCCcccCcccccCCCCCC
Confidence 9999999875 5799999999997544
No 9
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=1.4e-95 Score=782.36 Aligned_cols=369 Identities=30% Similarity=0.458 Sum_probs=334.4
Q ss_pred ceEEecccccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHH
Q psy14235 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (645)
Q Consensus 60 g~~t~d~~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~ 138 (645)
+..+..++.+|++|+.+..|++|+||+++| ++||||+|+||+++ ++||||+||||+|+|||.+|+++|.+
T Consensus 9 ~~~~~~~~~~Gl~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~---------~~feev~~LLl~G~lPt~~el~~~~~ 79 (390)
T COG0372 9 SDVGRFTYDPGLEGVAACETAISYIDGDGGILRYRGYDIEDLAEK---------SSFEEVAYLLLYGELPTKAELAAFFA 79 (390)
T ss_pred CCccccccCCcccccceeeeeeeEecCCCceEEECCccHHHHHhh---------cCHHHHHHHHHcCcCCChHHHHHHHH
Confidence 455666677899999999999999999999 69999999999998 58999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHh
Q psy14235 139 SWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRN 218 (645)
Q Consensus 139 ~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~ 218 (645)
++..++.+|+++.+++..+|++.|||++|++++++|+..+.... +.....+.+++++|++|+|+|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~~~----------~~~~~~~~a~rlia~~pti~a~~yr~ 149 (390)
T COG0372 80 KLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSAFYPDKL----------DLNDRREAALRLIAKLPTIAAAVYRY 149 (390)
T ss_pred HHHHhcCccHHHHHHHHhCCCCcCcHHHHHHHHHHhcccccccc----------ccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999988887543210 01126778999999999999999996
Q ss_pred hhcCCCccccCCCCCCHHHHHHHHhCCC--C-hHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhcc
Q psy14235 219 TFQGGKGIGAIDTNKDWSANFTSMLGFD--N-HQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGL 295 (645)
Q Consensus 219 ~~~~G~~~~~p~~~l~~a~nfl~ml~~~--~-~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL 295 (645)
..|.+++.|+++++|++|||+||.+. + |..+++||++|||||||| +|+||||+||+|||+||||+|++|||+||
T Consensus 150 --~~g~~~i~p~~~~s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe-~NASTftarvvaST~sd~ys~i~agi~aL 226 (390)
T COG0372 150 --SRGEPPIAPDPDLSYAENFLYMLFGEPPSPPVEARAMDRALILHADHE-LNASTFTARVVASTGSDLYACIAAGIGAL 226 (390)
T ss_pred --hcCCCCccCCCCccHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhcCCcHHHHHHHHHHHc
Confidence 57888888999999999999999885 3 588999999999999999 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChH
Q psy14235 296 AGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSL 372 (645)
Q Consensus 296 ~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~ 372 (645)
+|||||||||+|++||++|.+ +.+++++||++.|++|++||||||||||++|||+++|+++++++. +++++
T Consensus 227 ~GPlHGGAne~v~~ml~ei~~------~~~~~~~~v~~~l~~~~~imGFGHRVYk~~DPRa~~lk~~a~~l~~~~g~~~~ 300 (390)
T COG0372 227 KGPLHGGANEAVMKMLEEIGS------SGESAEAYVRKALDRKERIMGFGHRVYKNYDPRAKVLKELAEKLGKELGDLKL 300 (390)
T ss_pred CCCccCChHHHHHHHHHHHcc------cchhHHHHHHHHHhCCCCcCCCCCCCCCCCCchHHHHHHHHHHHHhhcCchhH
Confidence 999999999999999998743 134499999999999999999999999999999999999999984 44589
Q ss_pred HHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCccc
Q psy14235 373 FKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 452 (645)
Q Consensus 373 ~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y 452 (645)
++++.++|+++.+ +.++ .|++|||||||||++|++||||. ++||+||++||++||+||++||+..+.+|+||++.|
T Consensus 301 ~~~a~~~e~~~l~--~~~~-~k~l~PNvDfysg~v~~~lGiP~-~~fT~lFaiaR~~GW~AH~~Eq~~~~~riiRPr~~Y 376 (390)
T COG0372 301 YEIAEELEEIALE--DLGF-EKKLYPNVDFYSGIVYRALGIPT-DMFTPLFAIARTVGWIAHWIEQKEDGNKIIRPRALY 376 (390)
T ss_pred HHHHHHHHHHHHH--hhhc-ccCCCCccccchHHHHHHcCCCH-HhhhhhhhhhhHHHHHHHHHHHHhccCCccCChhhh
Confidence 9999999999854 3344 89999999999999999999997 899999999999999999999999966899999999
Q ss_pred chhhHhhh
Q psy14235 453 TNDLVKQY 460 (645)
Q Consensus 453 ~~~~~~~v 460 (645)
+|+.++.+
T Consensus 377 ~G~~~r~~ 384 (390)
T COG0372 377 TGPEERDY 384 (390)
T ss_pred cCcccccc
Confidence 99887743
No 10
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=1.6e-94 Score=777.42 Aligned_cols=367 Identities=28% Similarity=0.429 Sum_probs=333.4
Q ss_pred ceEEecccccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHH
Q psy14235 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (645)
Q Consensus 60 g~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~ 138 (645)
|.+++|+ ||+|+.+.+|.||+|||++|+ +||||+|+||+++ .+||||+||||+|+|||++|+++|++
T Consensus 1 g~~~~~~---GL~~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~---------~~feev~yLLl~G~LPt~~el~~f~~ 68 (382)
T cd06107 1 GLRVYDP---GYLNTAVCESSITYIDGDKGILLYRGYPIEQLAES---------STYEEVAYLLLWGELPTQEQYDEFQR 68 (382)
T ss_pred CCCCCCC---CcCCeeeEeeeCeeEeCCCCeEEECCccHHHHHhc---------CCHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3455555 788999999999999999995 9999999999998 58999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcC---hhhHHHHHHHHHHhhhHHHHHH
Q psy14235 139 SWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKY---WEYVYEDSMDLIAKLPVVAATI 215 (645)
Q Consensus 139 ~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~---~~~~~~~a~~LiA~lP~iaA~i 215 (645)
+|.+++.+|+++.++|+++|+++|||++|+++|++|+..++.......| ..| ++...+++++|||++|+|+|++
T Consensus 69 ~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~liA~~p~i~A~~ 145 (382)
T cd06107 69 RLSEHMMVPESVHRLIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTG---DLYQNNPEVRDKQIIRTLAKMPTIAAAA 145 (382)
T ss_pred HHHHccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhhcccCccccchhhc---cccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876532111111 123 3677788999999999999999
Q ss_pred HHhhhcCCCccccCCCCCCHHHHHHHHhCCC-------ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHH
Q psy14235 216 YRNTFQGGKGIGAIDTNKDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSF 288 (645)
Q Consensus 216 yr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~-------~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~av 288 (645)
||+ ++|+++++|++++||++|||+||++. +++.+++||++|||||||| +|+||||+|++|||++|+|+|+
T Consensus 146 yr~--~~g~~~~~P~~~ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~ST~aaRv~aSt~ad~~s~v 222 (382)
T cd06107 146 YCH--RIGRPFVYPRANLSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHE-MNCSTSAARHTGSSLADPISCM 222 (382)
T ss_pred HHH--hCCCCCCCCCCCCCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccC-CcchhHHHHHHHhcCCcHHHHH
Confidence 995 58999999999999999999999863 4788999999999999998 8999999999999999999999
Q ss_pred HHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC-
Q psy14235 289 AAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL- 367 (645)
Q Consensus 289 aAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~- 367 (645)
+||+++|+||+|||||++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++.
T Consensus 223 ~aai~al~GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~ 295 (382)
T cd06107 223 AAAIAALYGPLHGGANEAALKMLREI----G---TPENVPAFIERVKNGKRRLMGFGHRVYKNYDPRAKVIREILHEVLT 295 (382)
T ss_pred HHHHhhccCCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCCcCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999876 3 468999999999999999999999999999999999999999875
Q ss_pred --CCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhC-CC
Q psy14235 368 --PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LP 444 (645)
Q Consensus 368 --~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~-~p 444 (645)
+.++++++++++|+++.+ +++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||...+ .+
T Consensus 296 ~~~~~~~~~~a~~ie~~~~~--~~~~~~k~l~pNvD~~sa~~~~~lG~p~-~~~t~lf~~sR~~Gw~AH~~Eq~~~~~~~ 372 (382)
T cd06107 296 EVEKDPLLKVAMELERIALE--DEYFVSRKLYPNVDFYSGFIYKALGFPP-EFFTVLFAVARTSGWMAHWREMMEDPLQR 372 (382)
T ss_pred hcCCcHHHHHHHHHHHHHHH--HhhhccCCCCcChHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 458999999999998755 5678889999999999999999999986 89999999999999999999999886 47
Q ss_pred CCCCCcccch
Q psy14235 445 IERPKSLSTN 454 (645)
Q Consensus 445 I~RPrs~y~~ 454 (645)
|+||++.|+|
T Consensus 373 i~RP~~~Y~G 382 (382)
T cd06107 373 IWRPRQVYTG 382 (382)
T ss_pred eeCcccccCC
Confidence 9999999986
No 11
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=1.9e-94 Score=777.28 Aligned_cols=367 Identities=28% Similarity=0.403 Sum_probs=333.8
Q ss_pred ceEEecccccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHH
Q psy14235 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (645)
Q Consensus 60 g~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~ 138 (645)
|.+++|+ |++|+.+.+|+||+|||++|+ +||||+|+||+++ .+||||+||||+|+|||++|+++|++
T Consensus 1 g~~~~~~---Gl~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~---------~~feEv~yLLl~G~lPt~~el~~f~~ 68 (384)
T cd06116 1 GLMTYDP---AYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQ---------SSYLEVAYLLLHGELPTKERLAQWVY 68 (384)
T ss_pred CCCCCCC---CcCCeeEEeeEeeeEeCCCCeEEECCccHHHHhcc---------CCHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 3445555 788899999999999999995 9999999999998 47999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHh
Q psy14235 139 SWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRN 218 (645)
Q Consensus 139 ~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~ 218 (645)
+|.+++.+|+++.+++++||+++|||++|+++|++|+.+++....+ ...+...+++++|+|++|+|+|++||+
T Consensus 69 ~L~~~~~lp~~v~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~-------~~~~~~~~~~~rliA~~p~i~A~~~r~ 141 (384)
T cd06116 69 DITRHTMTHENLKKFMDGFRYDAHPMGILISSVAALSTFYPEAKNI-------GDEEQRNKQIIRLIGKMPTIAAFAYRH 141 (384)
T ss_pred HHHHccCCCHHHHHHHHhcCcCCCcHHHHHHHHHhhhhcCcccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877653221 123556678899999999999999996
Q ss_pred hhcCCCccccCCCCCCHHHHHHHHhCCC-------ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHh
Q psy14235 219 TFQGGKGIGAIDTNKDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAG 291 (645)
Q Consensus 219 ~~~~G~~~~~p~~~l~~a~nfl~ml~~~-------~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAg 291 (645)
+.|+++++|+++++|++|||+||++. +++.+++||++|||||||| +|+||||+|++|||++|||+|++||
T Consensus 142 --~~g~~~~~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~-~n~STfaarv~aSt~ad~ysav~ag 218 (384)
T cd06116 142 --RLGLPYVLPDNDLSYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHE-QNCSTSAMRSVGSSRADPYTAVAAA 218 (384)
T ss_pred --HcCCCccCCCCCCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCC-CCchhHHHhhhhccCCCHHHHHHHH
Confidence 57988999999999999999999863 5778999999999999998 8999999999999999999999999
Q ss_pred hhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---C
Q psy14235 292 MNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---P 368 (645)
Q Consensus 292 l~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~ 368 (645)
+++|+||+|||||++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +
T Consensus 219 i~aL~GplHGGA~e~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~ 291 (384)
T cd06116 219 VAALYGPLHGGANEAVLRMLQQI----G---SPKNIPDFIETVKQGKERLMGFGHRVYKNYDPRARIIKKIADEVFEATG 291 (384)
T ss_pred HHhccCCcccchHHHHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999876 3 368899999999999999999999999999999999999999874 4
Q ss_pred CChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhC-CCCCC
Q psy14235 369 DDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LPIER 447 (645)
Q Consensus 369 ~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~-~pI~R 447 (645)
.++++++++++|+++.+ +++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||...+ .+|+|
T Consensus 292 ~~~~~~ia~~~e~~~~~--~~~~~~k~l~pNvD~ysa~l~~~lGip~-~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~i~R 368 (384)
T cd06116 292 RNPLLDIAVELEKIALE--DEYFISRKLYPNVDFYSGLIYQALGFPT-EAFTVLFAIPRTSGWLAQWIEMLRDPEQKIAR 368 (384)
T ss_pred CCHHHHHHHHHHHHHHH--hhhhcccCCCCChHHHHHHHHHHhCCCh-hhccchhhhhhhchHHHHHHHHHhCcCCcccC
Confidence 57899999999998865 5678889999999999999999999986 89999999999999999999999864 56999
Q ss_pred CCcccchhhHh
Q psy14235 448 PKSLSTNDLVK 458 (645)
Q Consensus 448 Prs~y~~~~~~ 458 (645)
|++.|+|+..+
T Consensus 369 P~~~Y~G~~~~ 379 (384)
T cd06116 369 PRQVYTGPRDR 379 (384)
T ss_pred ccccccCCCCC
Confidence 99999997554
No 12
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=1e-93 Score=776.37 Aligned_cols=378 Identities=28% Similarity=0.418 Sum_probs=337.1
Q ss_pred HHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhC
Q psy14235 47 VKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTG 125 (645)
Q Consensus 47 ~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G 125 (645)
..++++.+.++ |..++|+ ||+|+.+..|+||+|||++|+ +||||+|+||+++ .+||||+||||+|
T Consensus 17 ~~~~~~~~~~~--~~~~~~~---GL~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~---------~~feEv~yLLl~G 82 (412)
T TIGR01798 17 VIDIRKLYKQT--GLFTFDP---GFTSTASCESKITFIDGDKGILLYRGYPIDQLATK---------SDYLEVCYLLLNG 82 (412)
T ss_pred chhhHhhhhcC--CCCcCCC---CCCCceeEeeeCeeEeCCCCEEEECCccHHHHhcc---------CCHHHHHHHHHcC
Confidence 45666665555 5556655 788889999999999999995 9999999999997 4899999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHH
Q psy14235 126 DVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLI 205 (645)
Q Consensus 126 ~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~Li 205 (645)
+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.+++-. . +. ...+...+++++||
T Consensus 83 ~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~--~--~~---~~~~~~~~~a~~li 155 (412)
T TIGR01798 83 ELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSAFYHDS--L--DI---NDPRHREIAAIRLI 155 (412)
T ss_pred CCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhhhCccc--c--cc---CCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998754311 0 11 12355667899999
Q ss_pred HhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCC-------ChHHHHHHHHHHHHhccCCCCCcchhhhhhhh
Q psy14235 206 AKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVG 278 (645)
Q Consensus 206 A~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~-------~~~~~~~l~~~LiLhADHeg~n~ST~aaRvva 278 (645)
|++|+|+|++||+ ++|++++.|++++||++||++||+|. ++..+++||++|||||||| +|+||||+|++|
T Consensus 156 A~~p~i~A~~yr~--~~g~~~i~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~STfaaRv~a 232 (412)
T TIGR01798 156 AKIPTLAAMSYKY--SIGQPFVYPRNDLSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHE-QNASTSTVRLAG 232 (412)
T ss_pred HHHHHHHHHHHHH--hCCCCCcCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCC-CCcccceeeeee
Confidence 9999999999994 68999999999999999999999863 5678999999999999998 999999999999
Q ss_pred ccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC--CcccccCCCCCCCCCccH
Q psy14235 279 SALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSG--QVVPGYGHAVLRKTDPRY 356 (645)
Q Consensus 279 St~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g--~~IpGFGH~Vyk~~DPRa 356 (645)
||++|+|+|++|||+||+||+|||||++|++||+++ + +++++++||++.++++ ++||||||||||..|||+
T Consensus 233 St~ad~ysav~agi~aL~GplHGGA~e~v~~ml~ei----~---~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~~DPRa 305 (412)
T TIGR01798 233 SSGANPFACIAAGIAALWGPAHGGANEAALKMLEEI----G---SVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYDPRA 305 (412)
T ss_pred cCCCCHHHHHHHHhhhccCccccchHHHHHHHHHHh----C---ChhHHHHHHHHHHhcCCCccccCCCCCCCCCCCccH
Confidence 999999999999999999999999999999999876 3 3589999999999888 499999999999999999
Q ss_pred HHHHHHHHhhC---C--CChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhh
Q psy14235 357 TCQREFAQKHL---P--DDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGV 431 (645)
Q Consensus 357 ~~L~~~a~~~~---~--~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~Gw 431 (645)
++|+++++++. + .++++++++++|+++.+ .++++.|+++||||||+|+++++||||. ++||++|++||++||
T Consensus 306 ~~L~~~a~~l~~~~g~~~~~~~~~a~~~e~~~~~--~~~~~~k~l~pNvD~~sa~l~~~lG~p~-~~~t~lFaisR~~Gw 382 (412)
T TIGR01798 306 KVMRETCHEVLKELGLHDDPLFKLAMELEKIALN--DPYFIERKLYPNVDFYSGIILKAMGIPT-SMFTVIFALARTVGW 382 (412)
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHh--hhhhccCCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHhhhhH
Confidence 99999998753 2 47899999999998865 5678889999999999999999999986 899999999999999
Q ss_pred hHHHHHHHHhC-CCCCCCCcccchhhHh
Q psy14235 432 LASLIWDRALG-LPIERPKSLSTNDLVK 458 (645)
Q Consensus 432 lAH~ie~~~~~-~pI~RPrs~y~~~~~~ 458 (645)
+||++||...+ .+|+||++.|+|+..+
T Consensus 383 ~AH~~Eq~~~~~~~l~RP~~~Y~G~~~~ 410 (412)
T TIGR01798 383 ISHWSEMISDPGQKIGRPRQLYTGEEQR 410 (412)
T ss_pred HHHHHHHHhCCCCcccCchhccCCCCCC
Confidence 99999999874 5799999999996543
No 13
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=2.7e-93 Score=775.28 Aligned_cols=377 Identities=28% Similarity=0.417 Sum_probs=338.2
Q ss_pred hhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHh
Q psy14235 45 ERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLV 123 (645)
Q Consensus 45 ~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl 123 (645)
+...++++.+.++ |.+++|+ |++|+.+..|+||+|||++|+ +||||+|+||+++ .+||||+||||
T Consensus 28 ~~~~~~~~~~~~~--~~~~~~~---Gl~~~~~~~S~Is~iDg~~G~L~YRGy~i~dLa~~---------~~feEva~LLl 93 (419)
T PRK05614 28 PDVIDIRKLYGST--GYFTYDP---GFTSTASCESKITYIDGDKGILLYRGYPIEQLAEK---------SDFLEVCYLLL 93 (419)
T ss_pred CcceehHhhhhcc--CCcccCC---ccCCceeeeeeceeEeCCCCEEEECCccHHHHHhc---------CCHHHHHHHHH
Confidence 3456778877776 6677776 667778999999999999995 9999999999998 58999999999
Q ss_pred hCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHH
Q psy14235 124 TGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMD 203 (645)
Q Consensus 124 ~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~ 203 (645)
+|+|||++|+++|+++|.+++.+|+.+.++++++|+++|||++|+++|++|+.+++. ..++. ..+...+++++
T Consensus 94 ~G~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~------~~~~~-~~~~~~~~a~r 166 (419)
T PRK05614 94 YGELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSAFYHD------SLDIN-DPEHREIAAIR 166 (419)
T ss_pred cCcCCCHHHHHHHHHhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCcc------ccCCC-CHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876431 11212 23456678999
Q ss_pred HHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCC-------ChHHHHHHHHHHHHhccCCCCCcchhhhhh
Q psy14235 204 LIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHL 276 (645)
Q Consensus 204 LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~-------~~~~~~~l~~~LiLhADHeg~n~ST~aaRv 276 (645)
|||++|+|+|++||+ ++|+++++|++++||++||++||.+. ++..+++||++|||||||| +|+||||+|+
T Consensus 167 lia~~p~i~A~~~r~--~~g~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~-~n~STfa~Rv 243 (419)
T PRK05614 167 LIAKMPTLAAMAYKY--SIGQPFVYPRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHE-QNASTSTVRL 243 (419)
T ss_pred HHHHHHHHHHHHHHH--hCCCCCCCCCCccCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCC-CCcchHHHhh
Confidence 999999999999995 68999999999999999999999763 5678899999999999999 9999999999
Q ss_pred hhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh--cCCcccccCCCCCCCCCc
Q psy14235 277 VGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLK--SGQVVPGYGHAVLRKTDP 354 (645)
Q Consensus 277 vaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~--~g~~IpGFGH~Vyk~~DP 354 (645)
||||++|+|+|++|||++|+||+|||||++|++||+++ + +++++++||+++++ +|++||||||||||..||
T Consensus 244 vaSt~adlysav~agi~aL~GplHGGA~e~v~~~l~~i----~---~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk~~DP 316 (419)
T PRK05614 244 AGSSGANPFACIAAGIAALWGPAHGGANEAVLKMLEEI----G---SVDNIPEFIARAKDKNDGFRLMGFGHRVYKNYDP 316 (419)
T ss_pred hhccCCCHHHHHHHHHhhcCCCcccChHHHHHHHHHHh----C---CchhHHHHHHHHHhccCCccccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999876 3 35889999999976 456999999999999999
Q ss_pred cHHHHHHHHHhh---CC-CChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhh
Q psy14235 355 RYTCQREFAQKH---LP-DDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALG 430 (645)
Q Consensus 355 Ra~~L~~~a~~~---~~-~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~G 430 (645)
|+++|+++++++ .+ +++++++++++|+++.+ +++++.|+++||||||+|+++++||||. ++||++|++||++|
T Consensus 317 Ra~~l~~~a~~l~~~~~~~~~~~~ia~~ie~~~~~--~~~~~~r~l~pNvD~~s~~l~~~lG~p~-~~~t~lFa~~R~~G 393 (419)
T PRK05614 317 RAKIMRETCHEVLKELGLNDPLLEVAMELEEIALN--DEYFIERKLYPNVDFYSGIILKALGIPT-SMFTVIFALARTVG 393 (419)
T ss_pred CHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh--hhhhccCCCCcChHHHHHHHHHHcCcCh-hhhcchHHhHhHHH
Confidence 999999999865 33 78899999999998866 6788999999999999999999999986 89999999999999
Q ss_pred hhHHHHHHHHh-CCCCCCCCcccchh
Q psy14235 431 VLASLIWDRAL-GLPIERPKSLSTND 455 (645)
Q Consensus 431 wlAH~ie~~~~-~~pI~RPrs~y~~~ 455 (645)
|+||++||+.. +.+|+||+++|+|.
T Consensus 394 w~AH~~Eq~~~~~~~iiRPr~~Y~G~ 419 (419)
T PRK05614 394 WIAHWNEMHSDPEQKIGRPRQLYTGY 419 (419)
T ss_pred HHHHHHHHHhccCCcccCCCccccCC
Confidence 99999999987 34699999999983
No 14
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=8.5e-93 Score=757.02 Aligned_cols=346 Identities=25% Similarity=0.345 Sum_probs=326.2
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+.+.+|+||+|||++| ++||||+|+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 1 ~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~---------~~feev~~LLl~G~lP~~~el~~f~~~l~~~~~lp 71 (349)
T cd06109 1 PGLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGS---------ASFEDVAALLWNGFFPDLPELEEFRAALAAARALP 71 (349)
T ss_pred CCcCCceeeeeeceeEeCCCCeEEECCccHHHHHhh---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 489999999999999999999 69999999999998 48999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+.+.+++++| +++|||++|++++++++.+ +.++++++|+|++|+|+|++||+ +.|++++
T Consensus 72 ~~v~~~~~~~-~~~~pm~~l~~~~s~~~~~------------------~~~~~a~~liA~~p~i~a~~~r~--~~g~~~~ 130 (349)
T cd06109 72 DVVAALLPAL-AGLDPMDALRALLALLPDS------------------PDLATALRLLAAAPVITAALLRL--SRGKQPI 130 (349)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHHHhcCch------------------hHHHHHHHHHHHHHHHHHHHHHH--HcCCCCc
Confidence 9999999999 8999999999999999753 23578999999999999999996 4688888
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
.|++++||++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+|||||+
T Consensus 131 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~al~GplHGGA~e 209 (349)
T cd06109 131 APDPSLSHAADYLRMLTGEPPSEAHVRALDAYLVTVADHG-MNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPG 209 (349)
T ss_pred CCCCCCCHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccC-CCchhhHHHHHhccCCcHHHHHHHHHHhccCCcccChHH
Confidence 9999999999999999874 6678999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCc
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPP 385 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~ 385 (645)
+|++||+++. +++++++||++.+++|++||||||||||..|||+++|+++++++..+++++++++++|+++++
T Consensus 210 ~v~~~l~ei~-------~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~ 282 (349)
T cd06109 210 PVLDMLDAIG-------TPENAEAWLREALARGERLMGFGHRVYRVRDPRADVLKAAAERLGAPDERLEFAEAVEQAALA 282 (349)
T ss_pred HHHHHHHHhC-------ChhhHHHHHHHHHHcCCeecCCCCCCCCCCCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 9999998763 358899999999999999999999999999999999999999998888999999999999988
Q ss_pred hhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccch
Q psy14235 386 VLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTN 454 (645)
Q Consensus 386 vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~ 454 (645)
+++++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|
T Consensus 283 ~~~~~~~~r~l~pNvD~~sg~l~~~lGip~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G 349 (349)
T cd06109 283 LLREYKPGRPLETNVEFYTALLLEALGLPR-EAFTPTFAAGRTAGWTAHVLEQARTG-RLIRPQSRYVG 349 (349)
T ss_pred HHHHhcCCCCCCCCchhhHHHHHHHhCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 878888899999999999999999999986 89999999999999999999999877 58999999986
No 15
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=3.7e-92 Score=757.56 Aligned_cols=356 Identities=23% Similarity=0.333 Sum_probs=323.9
Q ss_pred ccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCC
Q psy14235 68 YGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (645)
Q Consensus 68 ~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~l 146 (645)
..||+|+.+..|.||++|+++| |+||||+|+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 9 ~~GL~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~---------~~feeva~LL~~G~LP~~~el~~f~~~L~~~~~l 79 (378)
T PRK12351 9 SVALSGVVAGNTALCTVGKSGNDLHYRGYDILDLAEH---------CEFEEVAHLLVHGKLPTQAELAAYKTKLKALRGL 79 (378)
T ss_pred CCCCCCeeeccccCeeEecCCCEEEECCccHHHHHhc---------CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCC
Confidence 4699999999999999999988 69999999999997 4799999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcc
Q psy14235 147 PSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGI 226 (645)
Q Consensus 147 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~ 226 (645)
|+++.++|++||+++|||++|+++|++|++.++... +...+..++++++|||++|+|+|++||+. ..|+++
T Consensus 80 p~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~d~~~~--------~~~~~~~~~~a~rliA~~p~i~a~~~r~~-~~~~~~ 150 (378)
T PRK12351 80 PAAVKTVLEAIPAAAHPMDVMRTGVSVLGCLLPEKE--------DHNFSGARDIADRLLASLGSILLYWYHYS-HNGRRI 150 (378)
T ss_pred CHHHHHHHHhCCccCCHHHHHHHHHHhhcccCcccc--------cCChHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcc
Confidence 999999999999999999999999999998765321 12346677899999999999999999975 235555
Q ss_pred ccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChH
Q psy14235 227 GAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304 (645)
Q Consensus 227 ~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn 304 (645)
.+|+++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||+||+||+|||||
T Consensus 151 ~p~~~~ls~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~naST~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~ 229 (378)
T PRK12351 151 EVETDDDSIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGAN 229 (378)
T ss_pred CCCCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHhccCCCHHHHHHHHHHhccCCccCchH
Confidence 44567899999999999874 7788999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q psy14235 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYK 381 (645)
Q Consensus 305 ~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~ 381 (645)
++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++|+
T Consensus 230 e~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~ 302 (378)
T PRK12351 230 EVAFEIQQRY----D---TPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKKLSKEAGDTKLYDIAERLET 302 (378)
T ss_pred HHHHHHHHHh----C---CHHHHHHHHHHHHhCCCccccCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999876 3 468999999999999999999999999999999999999999863 56799999999999
Q ss_pred hcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 382 VVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 382 v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
++.+ .|+++||||||+|+++++||||. ++||++|++||++||+||++||++.+ +|+||++.|+|+..+
T Consensus 303 ~~~~-------~k~l~pNvD~ysg~l~~~lG~p~-~~~t~lF~~sR~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~ 370 (378)
T PRK12351 303 VMWE-------EKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVISRTTGWAAHVIEQRQDN-KIIRPSANYTGPEDR 370 (378)
T ss_pred HHHH-------HhCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHHHHHHHHHHHHHHHhcC-CccCCcceecCCCCC
Confidence 8843 47999999999999999999986 89999999999999999999999987 488999999997554
No 16
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=9.2e-92 Score=755.35 Aligned_cols=359 Identities=26% Similarity=0.421 Sum_probs=331.0
Q ss_pred ccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCC
Q psy14235 68 YGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (645)
Q Consensus 68 ~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~l 146 (645)
..||+|+.++.|+||+|||++|+ +||||+|+||+++ .+||||+||||+|++||++|++.|+.+|.+++.+
T Consensus 5 ~~Gl~gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~---------~~Feev~~LLl~G~lP~~~el~~f~~~L~~~~~l 75 (377)
T PRK14036 5 RPGLEGVPATQSSISYVDGQKGILEYRGYPIEELAEK---------SSFLETAYLLIWGELPTAEELEEFEQEVRMHRRV 75 (377)
T ss_pred CCccCCCeeeeeeceEEECCCCEEEECCccHHHHHcc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Confidence 35899999999999999999995 9999999999998 4899999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcc
Q psy14235 147 PSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGI 226 (645)
Q Consensus 147 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~ 226 (645)
|+.+.++++++|+++|||++|+++|++|+..++... ....+..++++++|+|++|+|+|++||+ ++|+++
T Consensus 76 p~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~--------~~~~~~~~~~~~rliA~~p~i~a~~~r~--~~g~~~ 145 (377)
T PRK14036 76 KYRIRDMMKCFPETGHPMDALQASAAALGLFYSRRA--------LDDPEYIRDAVVRLIAKIPTMVAAFQLI--RKGNDP 145 (377)
T ss_pred CHHHHHHHHhCCCCCCHHHHHHHHHHHhhhcCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCC
Confidence 999999999999999999999999999998654321 1235678899999999999999999884 688888
Q ss_pred ccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChH
Q psy14235 227 GAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304 (645)
Q Consensus 227 ~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn 304 (645)
++|+++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|||+|++||+++|+||+|||||
T Consensus 146 ~~p~~~l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg-~naST~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~ 224 (377)
T PRK14036 146 IQPRDDLDYAANFLYMLTEREPDPLAARIFDRCLILHAEHT-INASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGAN 224 (377)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHHccCccccChH
Confidence 89999999999999999884 7788999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q psy14235 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYK 381 (645)
Q Consensus 305 ~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~ 381 (645)
++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++|+
T Consensus 225 e~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~ 297 (377)
T PRK14036 225 EDVLAMLEEI----G---SVENVRPYLDERLANKQKIMGFGHREYKVKDPRATILQKLAEELFARFGHDEYYEIALELER 297 (377)
T ss_pred HHHHHHHHHh----C---ChhhHHHHHHHHHHCCCceecCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999876 3 468999999999999999999999999999999999999999863 57899999999999
Q ss_pred hcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHhh
Q psy14235 382 VVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 459 (645)
Q Consensus 382 v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~ 459 (645)
++. ++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||...+ +|+||++.|+|+..+.
T Consensus 298 ~~~----~~~~~k~l~pNvD~~sa~l~~~lGip~-~~~t~lf~~sR~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~ 369 (377)
T PRK14036 298 VAE----ERLGPKGIYPNVDFYSGLVYRKLGIPR-DLFTPIFAIARVAGWLAHWREQLGAN-RIFRPTQIYTGSHNRR 369 (377)
T ss_pred HHH----HHhccCCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcC-cccCCCceecCCCCCC
Confidence 984 445678999999999999999999986 89999999999999999999999977 6999999999976553
No 17
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=1.3e-91 Score=750.48 Aligned_cols=353 Identities=24% Similarity=0.387 Sum_probs=322.0
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+.+..|+||+||+++| ++||||||+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 1 ~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~---------~sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 71 (363)
T cd06108 1 GGLAGVVAGQTAISTVGKGGKGLTYRGYDIEDLAEN---------ATFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLP 71 (363)
T ss_pred CCCCCCeeeeeeCceEeCCCCEEEECCccHHHHHhc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 489999999999999999998 69999999999997 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+++.+++++||+++|||++|+++|++|++.++... .+..++++++|||++|+|+|++||+. +.+.++.
T Consensus 72 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~d~~~~-----------~~~~~~~a~rlia~~p~i~a~~~r~~-~~~~~~~ 139 (363)
T cd06108 72 AALKTVLELIPKDSHPMDVMRTGCSMLGCLEPENE-----------FSQQYEIAIRLLAIFPSILLYWYHYS-HSGKRIE 139 (363)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHhhhhcCCccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccC
Confidence 99999999999999999999999999997664321 13456799999999999999999964 3344444
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
++++++||++||++||+|. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++||+++|+||+|||||+
T Consensus 140 p~~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~n~St~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e 218 (363)
T cd06108 140 TETDEDSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHE-FNASTFAARVTASTLSDFYSAITGAIGTLRGPLHGGANE 218 (363)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCC-CcchHHHHHHHhccCCCHHHHHHHHHHhccCCcccchHH
Confidence 5578899999999999875 6788999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKV 382 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~v 382 (645)
+|++||+++. +.+++++||++.+++|++||||||||||..|||+++|+++++++. +++++++++++++++
T Consensus 219 ~v~~~l~~i~-------~~~~~~~~v~~~l~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~ 291 (363)
T cd06108 219 AAMELIERFK-------SPEEAEQGLLEKLERKELIMGFGHRVYKEGDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEV 291 (363)
T ss_pred HHHHHHHHhC-------CHHHHHHHHHHHHhcCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999998763 368899999999999999999999999999999999999999763 568999999999998
Q ss_pred cCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHhh
Q psy14235 383 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 459 (645)
Q Consensus 383 ~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~ 459 (645)
+.+ .|+++||||||+|+|+++||||. ++||++|++||++||+||++||+..+ +|+||++.|+|+.++.
T Consensus 292 ~~~-------~~~l~pNvD~~sa~l~~~lG~p~-~~~t~iF~i~R~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~~ 359 (363)
T cd06108 292 MWE-------EKKLFPNLDFYSASAYHFCGIPT-ELFTPIFVMSRVTGWAAHIMEQRANN-RLIRPSADYIGPEPRP 359 (363)
T ss_pred HHH-------hcCCCcChHHHHHHHHHHcCCCh-hhhhhHHHHHHHHHHHHHHHHHHhcC-CCcCccceecCCCCCC
Confidence 832 48999999999999999999986 89999999999999999999999876 5889999999976553
No 18
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=5.1e-91 Score=762.07 Aligned_cols=376 Identities=28% Similarity=0.415 Sum_probs=336.1
Q ss_pred cCcc-----CcceEEeeeeeecCC----------CC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHH
Q psy14235 69 GGMR-----GIKGLVCETSVLDPE----------EG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQ 132 (645)
Q Consensus 69 ~Glr-----g~~~~~~eiS~iD~~----------~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~e 132 (645)
.||+ |+++..|+||++|++ +| |+||||||+||++++||+ ++.+||||+||||+|+|||++|
T Consensus 31 ~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~dLa~~~~~~---~~~~FeEv~~LLl~G~LPt~~e 107 (447)
T PRK14032 31 RGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKDLVNGFLKE---KRFGFEEVAYLLLFGELPTKEE 107 (447)
T ss_pred cccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCccHHHHHhhcccc---cCCCHHHHHHHHHcCCCCCHHH
Confidence 5788 999999999999984 47 799999999999998875 4568999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHH-HHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHH
Q psy14235 133 VQALSKSWASRAELPSH-VVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVV 211 (645)
Q Consensus 133 l~~f~~~L~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~i 211 (645)
++.|+++|.+++.+|+. +.++++++| ++|||++|+++|++|+++++... ..+|+..++++++|||++|+|
T Consensus 108 l~~f~~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~~~~~--------~~~~~~~~~~a~rLiA~~p~i 178 (447)
T PRK14032 108 LAEFTELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYDDNPD--------DTSIDNVLRQSISLIARFPTL 178 (447)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcCCCcc--------cCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 889999999 78999999999999998765321 235888999999999999999
Q ss_pred HHHHHHhh--hcCCCc--cccCCCCCCHHHHHHHHhCCC---ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCCh
Q psy14235 212 AATIYRNT--FQGGKG--IGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDP 284 (645)
Q Consensus 212 aA~iyr~~--~~~G~~--~~~p~~~l~~a~nfl~ml~~~---~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~ 284 (645)
+|++||+. ++.|.+ +.+|++++||++||++||++. ++..+++||++||||||||++|+||||+|++|||++|+
T Consensus 179 ~A~~yr~~~~~~~g~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aSt~ad~ 258 (447)
T PRK14032 179 AVYAYQAYRHYHDGKSLYIHPPKPELSTAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSSSGTDT 258 (447)
T ss_pred HHHHHHHHhhhhcCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHccCCcH
Confidence 99999832 332655 457999999999999999865 46778999999999999997899999999999999999
Q ss_pred HHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHh-----cCCcccccCCCCCCCCCccHHHH
Q psy14235 285 YLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLK-----SGQVVPGYGHAVLRKTDPRYTCQ 359 (645)
Q Consensus 285 y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~-----~g~~IpGFGH~Vyk~~DPRa~~L 359 (645)
|+|++|||+||+||+|||||++|++||+++.+..|+..+++++++|+++.++ +|++||||||||||..|||+++|
T Consensus 259 ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~~v~~~v~~~l~~~~~~~~~ri~GFGHrvyk~~DPRa~~L 338 (447)
T PRK14032 259 YSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDEDEIADYLTKILNKEAFDKSGLIYGMGHAVYTISDPRAVIL 338 (447)
T ss_pred HHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCCcccCCCCCCCCCCCccHHHH
Confidence 9999999999999999999999999999998655655578899999999987 56899999999999999999999
Q ss_pred HHHHHhhC---CCChHHHHHHHHHHhcCchhhh-hCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHH
Q psy14235 360 REFAQKHL---PDDSLFKLVSQVYKVVPPVLIE-TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASL 435 (645)
Q Consensus 360 ~~~a~~~~---~~~~~~~la~~ie~v~~~vl~~-~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ 435 (645)
+++++++. +.++++++++++|+++.+++.+ +++.|+++||||||+|+|+++||||. ++||++|++||++||+||+
T Consensus 339 ~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k~l~pNVDfysa~i~~~lGip~-~~~t~lFaisR~~Gw~AH~ 417 (447)
T PRK14032 339 KKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYKGVSANVDFYSGFVYDMLGIPE-ELYTPLFAIARIVGWSAHR 417 (447)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcChhhHHHHHHHHcCCCh-hhhhhhHHHHhHHHHHHHH
Confidence 99999874 4567899999999988765544 47789999999999999999999986 8999999999999999999
Q ss_pred HHHHHhCCCCCCCCcccchhhHh
Q psy14235 436 IWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 436 ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+||...+.+|+||++.|+|+ .+
T Consensus 418 ~Eq~~~~~~i~RP~~~YvG~-~~ 439 (447)
T PRK14032 418 IEELVNGGKIIRPAYKSVLE-RR 439 (447)
T ss_pred HHHHhcCCceecccceeeCC-CC
Confidence 99996555799999999998 44
No 19
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=1.2e-91 Score=751.86 Aligned_cols=353 Identities=23% Similarity=0.322 Sum_probs=321.4
Q ss_pred CccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14235 70 GMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (645)
Q Consensus 70 Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~ 148 (645)
||+|+.+..|+||++|+++| ++||||+|+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+|+
T Consensus 2 GL~gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~---------~~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~ 72 (366)
T cd06117 2 ALSGVAAGNTALCTVGRSGNDLHYRGYDILDLAEK---------CEFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPA 72 (366)
T ss_pred CCCCeeEecccCeeeecccCEEEECCccHHHHHhc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCH
Confidence 89999999999999999998 69999999999998 479999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcccc
Q psy14235 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGA 228 (645)
Q Consensus 149 ~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~ 228 (645)
.+.++++++|+++|||++|+++|++|++.+++... ...+...+++++|||++|+|+|++||+. .|..++.
T Consensus 73 ~v~~~i~~~p~~~hpm~~l~~~vs~l~~~~~~~~~--------~~~~~~~~~a~rlia~~p~i~a~~~r~~--~~~~~i~ 142 (366)
T cd06117 73 NVKTALEQLPAAAHPMDVMRTGVSVLGCVLPEKED--------HPVSGARDIADRLMASLGSILLYWYHYS--HNGKRIE 142 (366)
T ss_pred HHHHHHHhCCccCCHHHHHHHHHhhhcccCccccc--------CChHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccC
Confidence 99999999999999999999999999988765321 1234567789999999999999999964 3444445
Q ss_pred C-CCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 229 I-DTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 229 p-~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
| +++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++||+++|+||+|||||+
T Consensus 143 p~~~~~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~n~ST~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e 221 (366)
T cd06117 143 VETDDDSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANE 221 (366)
T ss_pred CCCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHHccCCcHHHHHHHHHHhccCCccCchHH
Confidence 4 66899999999999874 7788999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKV 382 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~v 382 (645)
+|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++|++
T Consensus 222 ~v~~~l~~i----~---~~~~~~~~i~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~ 294 (366)
T cd06117 222 VAFEIQQRY----E---SADEAEADIRRRVENKEVVIGFGHPVYTIADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETV 294 (366)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999876 3 468999999999999999999999999999999999999999875 457899999999998
Q ss_pred cCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 383 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 383 ~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+. +.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ +|+||++.|+|+..+
T Consensus 295 ~~-------~~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G~~~~ 361 (366)
T cd06117 295 MW-------EEKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVIARTTGWSAHIIEQRQDG-KIIRPSANYTGPEDL 361 (366)
T ss_pred HH-------HHhCCCcCcHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceecCCCCC
Confidence 73 257999999999999999999986 89999999999999999999999977 488999999997544
No 20
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=2.5e-91 Score=752.03 Aligned_cols=359 Identities=28% Similarity=0.449 Sum_probs=333.0
Q ss_pred cCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+.+.+|+||+|||++|+ +||||+|+||+++ .+||||+||||+|++||++|++.|+.+|.+++.+|
T Consensus 3 ~Gl~gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~---------~~Feev~~LLl~G~lP~~~el~~~~~~L~~~~~lp 73 (373)
T cd06112 3 PGLAGVPAAESSISYIDGKNGILEYRGYDIEELAEY---------SSFEEVALLLLDGDLPTAAELEEFDKELRQHRRVK 73 (373)
T ss_pred CccCCCeeeeeeceEEeCCCCEEEECCccHHHHhcC---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999995 9999999999997 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+++.++++++|+++|||++|+++|++|++.+++...+ .++|+...+++++|+|++|+|+|++||+ ++|++++
T Consensus 74 ~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~~------~~~~~~~~~~a~~liA~~p~i~a~~~r~--~~g~~~~ 145 (373)
T cd06112 74 YNIRDMMKCFPETGHPMDMLQATVAALGMFYPKPEVL------KPNPDYIDAATVKLIAKMPTLVAMWARI--RNGDDPI 145 (373)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhhccCcccccc------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCc
Confidence 9999999999999999999999999999988754211 1367889999999999999999999884 6888888
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
.|++++||++||++||+|. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++||+++|+||+|||||+
T Consensus 146 ~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg-~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e 224 (373)
T cd06112 146 EPRPDLDYAENFLYMLFGEEPDPATAKILDACLILHAEHT-MNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANE 224 (373)
T ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHH
Confidence 9999999999999999874 7788999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCC----CChHHHHHHHHHH
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP----DDSLFKLVSQVYK 381 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~----~~~~~~la~~ie~ 381 (645)
+|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++.. .++++++++++|+
T Consensus 225 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~ 297 (373)
T cd06112 225 DVLEMLEEI----G---SPENVKAYLDKKLANKQKIWGFGHRVYKTKDPRATILQKLAEDLFAKMGELSKLYEIALEVER 297 (373)
T ss_pred HHHHHHHHh----C---CHHHHHHHHHHHHhcCCeeeCCCCccCCCCCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 999999876 3 4689999999999999999999999999999999999999998853 4789999999999
Q ss_pred hcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 382 VVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 382 v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
++ .++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||...+ +|+||++.|+|+..+
T Consensus 298 ~~----~~~~~~k~l~pNvd~~s~~l~~~lG~p~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~ 368 (373)
T cd06112 298 LC----EELLGHKGVYPNVDFYSGIVYKELGIPA-DLFTPIFAVARVAGWLAHWKEQLGDN-RIFRPTQIYIGEIDR 368 (373)
T ss_pred HH----HHHhCcCCCCcChHHHHHHHHHHhCcCh-HhhchHHHHHhHHHHHHHHHHHHhcc-CccCCCceecCCCCC
Confidence 88 4566779999999999999999999996 89999999999999999999999976 599999999997554
No 21
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=8.7e-91 Score=745.89 Aligned_cols=356 Identities=25% Similarity=0.369 Sum_probs=328.6
Q ss_pred cccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCC
Q psy14235 67 MYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (645)
Q Consensus 67 ~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~l 146 (645)
...|++|+.+.+|+||+||++ +++||||+|+||+++ .+||||+||||+|+|||++|+++|+.+|.+++.+
T Consensus 3 ~~~Gl~~v~~~~s~Is~id~~-~L~YRGy~i~dLa~~---------~~Feeva~LLl~G~lP~~~el~~f~~~L~~~~~l 72 (371)
T PRK14035 3 LQRGLEGVIAAETKISSIIDS-QLTYAGYDIDDLAEN---------ASFEEVIFLLWNYRLPTEEELAHLKGKLRKYMTL 72 (371)
T ss_pred CCCCCCCceEeeeeeeEecCC-EeEECCccHHHHHhc---------CCHHHHHHHHHCCcCCCHHHHHHHHHHHHHcCCC
Confidence 357999999999999999975 599999999999997 5899999999999999999999999999999999
Q ss_pred CHHHHHHHhcCC-CCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCc
Q psy14235 147 PSHVVTMLNNFP-NHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKG 225 (645)
Q Consensus 147 p~~v~~~i~~lP-~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~ 225 (645)
|+.+.++++.+| +++|||++|+++|++|+.++++.. ...|+..++++++|+|++|+|+|++||+ ++|++
T Consensus 73 p~~v~~~i~~~~~~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~rliA~~p~i~A~~~r~--~~g~~ 142 (371)
T PRK14035 73 NDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDAE--------EESDEARYERAIRIQAKVASLVTAFARV--RQGKE 142 (371)
T ss_pred CHHHHHHHHhcCCcCCCHHHHHHHHHHHHhccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCC
Confidence 999999998865 689999999999999998876531 2357888999999999999999999985 68999
Q ss_pred cccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccCh
Q psy14235 226 IGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303 (645)
Q Consensus 226 ~~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGA 303 (645)
++.|++++||++||++||+|. ++..+++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||
T Consensus 143 ~~~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~naST~aaRv~aSt~ad~~sav~Agi~al~GplHGGA 221 (371)
T PRK14035 143 PLKPRPDLSYAANFLYMLRGELPTDIEVEAFNKALVLHADHE-LNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGA 221 (371)
T ss_pred CCCCCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccCh
Confidence 999999999999999999875 6677899999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHH
Q psy14235 304 NQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVY 380 (645)
Q Consensus 304 n~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie 380 (645)
|++|++||+++. +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++|
T Consensus 222 ~e~v~~~l~~i~-------~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie 294 (371)
T PRK14035 222 NERVMDMLSEIR-------SIGDVDAYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKGTGREELFEMSVKIE 294 (371)
T ss_pred HHHHHHHHHHhC-------ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 999999998873 368999999999999999999999999999999999999999875 5678999999999
Q ss_pred HhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHhh
Q psy14235 381 KVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 459 (645)
Q Consensus 381 ~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~ 459 (645)
+++.+ .||++||||||+|+++++||||. ++||++|++||++||+||++||...+ +|+||++.|+|+....
T Consensus 295 ~~~~~-------~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~ 364 (371)
T PRK14035 295 KRMKE-------EKGLIPNVDFYSATVYHVMGIPH-DLFTPIFAVSRVAGWIAHILEQYKDN-RIMRPRAKYIGETNRK 364 (371)
T ss_pred HHHHH-------hcCCCCChHHHHHHHHHHcCCCh-HhhhhHHHHHhHHHHHHHHHHHHhcC-CccCCCccccCCCCCC
Confidence 98733 57999999999999999999986 89999999999999999999999876 6999999999976553
No 22
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=3.3e-90 Score=748.36 Aligned_cols=358 Identities=28% Similarity=0.410 Sum_probs=328.0
Q ss_pred ccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCC
Q psy14235 68 YGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (645)
Q Consensus 68 ~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~l 146 (645)
..||+|+++.+|+||+|||++|+ +||||+|+||+++ .+||||+||||+|+|||++|+++|+.+|.+++.+
T Consensus 28 ~~GL~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~---------~sfEEva~LL~~G~lP~~~el~~f~~~L~~~~~l 98 (400)
T cd06114 28 DPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEK---------SSFLEVCYLLLYGELPTAEQLQEFREEITRHTLV 98 (400)
T ss_pred CCCCCCceeEeeeCeEEeCCCCEEEECCccHHHHHhc---------CCHHHHHHHHHcCcCCCHHHHHHHHHHHHHccCC
Confidence 35899999999999999999995 9999999999997 4899999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcc
Q psy14235 147 PSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGI 226 (645)
Q Consensus 147 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~ 226 (645)
|+.+.++++.+|+++|||++|+++|++|+.+++.. + + ...++...+++++|||++|+|+|++||+ +.|+++
T Consensus 99 p~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~d~~~--~----~-~~~~~~~~~~a~~lia~~p~i~a~~~r~--~~g~~~ 169 (400)
T cd06114 99 HEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPDS--L----D-VNDPEQRELAAIRLIAKVPTIAAMAYRY--SIGQPF 169 (400)
T ss_pred CHHHHHHHHhcccCCCHHHHHHHHHHHHhhcCccc--c----c-cCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCC
Confidence 99999999999999999999999999999866432 1 1 1247788899999999999999999995 578888
Q ss_pred ccCCCCCCHHHHHHHHhCCC-------ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhcccccc
Q psy14235 227 GAIDTNKDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPL 299 (645)
Q Consensus 227 ~~p~~~l~~a~nfl~ml~~~-------~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPl 299 (645)
+.|++++||++||++|+++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+
T Consensus 170 ~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~-~n~STfaaRv~aSt~adl~sav~agl~al~Gpl 248 (400)
T cd06114 170 IYPDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHE-QNASTSTVRMVGSSGANLFASISAGIAALWGPL 248 (400)
T ss_pred CCCCCCcCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCC-CcchHHHHHHHhccCCcHHHHHHHHHHhccCCc
Confidence 89999999999999999864 5788999999999999998 999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC--CcccccCCCCCCCCCccHHHHHHHHHhhC----CCChHH
Q psy14235 300 HGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSG--QVVPGYGHAVLRKTDPRYTCQREFAQKHL----PDDSLF 373 (645)
Q Consensus 300 HGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g--~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~----~~~~~~ 373 (645)
||||+++|++||.++. +++++++||++.+++| ++||||||||||..|||+++|+++++++. .+++++
T Consensus 249 HGGA~~~v~~~l~~i~-------~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ 321 (400)
T cd06114 249 HGGANEAVLEMLEEIG-------SVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGKDDPLL 321 (400)
T ss_pred ccChHHHHHHHHHHhc-------CcccHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999998764 2478999999999987 59999999999999999999999988752 347899
Q ss_pred HHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhC-CCCCCCCccc
Q psy14235 374 KLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LPIERPKSLS 452 (645)
Q Consensus 374 ~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~-~pI~RPrs~y 452 (645)
++++++|+++.+ .++++.|+++||||||+|+++++||||+ ++||++|++||++||+||++||+..+ .+|+||++.|
T Consensus 322 ~~~~~ie~~~~~--~~~~~~~~l~pNvD~~~a~l~~~lG~p~-~~~~~lFa~sR~~Gw~AH~~Eq~~~~~~~liRP~~~Y 398 (400)
T cd06114 322 EIAMELEEIALK--DDYFIERKLYPNVDFYSGIILRALGIPT-EMFTVLFALGRTPGWIAQWREMHEDPELKIGRPRQLY 398 (400)
T ss_pred HHHHHHHHHHHH--hhhhcccCCCCChHHHHHHHHHHcCCCh-HhhhhhHHHHhHHHHHHHHHHHHhCCCCceeCccccc
Confidence 999999998765 5677889999999999999999999986 89999999999999999999999974 4699999999
Q ss_pred ch
Q psy14235 453 TN 454 (645)
Q Consensus 453 ~~ 454 (645)
+|
T Consensus 399 vG 400 (400)
T cd06114 399 TG 400 (400)
T ss_pred CC
Confidence 87
No 23
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=7.3e-90 Score=738.98 Aligned_cols=354 Identities=26% Similarity=0.405 Sum_probs=325.2
Q ss_pred ccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 68 YGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 68 ~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
..||+|+.+.+|.||+||++ +++||||+|+||+++ .+||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 4 ~~GL~gv~~~~s~is~i~~~-~L~YRGy~i~dLa~~---------~~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~lp 73 (372)
T PRK14034 4 TRGLEGVVATTSSVSSIIDD-TLTYVGYNIDDLAEN---------ASFEEVVYLLWHRKLPNKQELAEFKEQLSENAKVP 73 (372)
T ss_pred CCCCCCceEeeeEeeccCCC-eEEECCccHHHHhcc---------CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35899999999999999954 699999999999987 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC-CCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcc
Q psy14235 148 SHVVTMLNNFPN-HLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGI 226 (645)
Q Consensus 148 ~~v~~~i~~lP~-~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~ 226 (645)
+.+.++++++|+ ++|||++|+++|++|+.++++.. ....+..++++++|+|++|+|+|++||+ ++|.++
T Consensus 74 ~~v~~~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~~liA~~p~i~a~~~r~--~~g~~~ 143 (372)
T PRK14034 74 GEIIEHLKQYDLKKVHPMSVLRTAISMLGLYDEEAE--------IMDEEANYRKAVRLQAKVPTIVAAFSRI--RKGLDP 143 (372)
T ss_pred HHHHHHHHhCCCcCcCHHHHHHHHHHhhcccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCC
Confidence 999999999997 59999999999999998776532 1224678899999999999999999984 688888
Q ss_pred ccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChH
Q psy14235 227 GAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304 (645)
Q Consensus 227 ~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn 304 (645)
++|++++||++||++||+|. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++||+++|+||+|||||
T Consensus 144 ~~p~~~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg-~n~ST~aaRv~aSt~~d~ysav~agi~al~GplHGGA~ 222 (372)
T PRK14034 144 VEPRKDLSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHE-LNASTFTARVCVATLSDVYSGITAAIGALKGPLHGGAN 222 (372)
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CCccHHHHHHHhccCCcHHHHHHHHhcccCCCccCCHH
Confidence 89999999999999999875 6678899999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q psy14235 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYK 381 (645)
Q Consensus 305 ~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~ 381 (645)
++|++||+++. +++++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++++
T Consensus 223 e~~~~~l~~i~-------~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~ 295 (372)
T PRK14034 223 ENVMKMLTEIG-------EEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEE 295 (372)
T ss_pred HHHHHHHHHhC-------CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999998763 368999999999999999999999999999999999999999874 56799999999999
Q ss_pred hcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 382 VVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 382 v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
++. +.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||++.|+|+-..
T Consensus 296 ~~~-------~~k~l~pNvD~~~a~l~~~lG~p~-~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~~ 363 (372)
T PRK14034 296 IVT-------KEKGLPPNVDFYSASVYHCLGIDH-DLFTPIFAISRMSGWLAHILEQYENN-RLIRPRADYVGPTHQ 363 (372)
T ss_pred HHH-------HcCCCCCChHHHHHHHHHHcCCCh-HhccchhHHHhHHHHHHHHHHHHhcC-CccCCCceecCCCCC
Confidence 873 257999999999999999999986 89999999999999999999999876 699999999997544
No 24
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=7.5e-90 Score=740.54 Aligned_cols=358 Identities=24% Similarity=0.378 Sum_probs=326.2
Q ss_pred cccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcC
Q psy14235 67 MYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE 145 (645)
Q Consensus 67 ~~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~ 145 (645)
+..||+|+++.+|+||+||+++|+ +||||+|+||+++ .+||||+||||+|+|||++|+++|+++|.+++.
T Consensus 4 ~~~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~---------~~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~ 74 (377)
T PRK14037 4 ISKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNY---------GSYEETIYLMLYGELPTKKELNDLKEKLNEEYE 74 (377)
T ss_pred CCCCCCCCeeeeeeceEEeCCCCEEEECCccHHHHHcc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 457999999999999999999995 9999999999997 489999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCc
Q psy14235 146 LPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKG 225 (645)
Q Consensus 146 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~ 225 (645)
+|+.+.+++++||+++|||++|+++|++|++.++.. + . .+..++++++|||++|+|+|++||+ ++|++
T Consensus 75 lp~~v~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~~--~-------~-~~~~~~~a~~liA~~p~i~a~~yr~--~~g~~ 142 (377)
T PRK14037 75 VPQEVIDSIYLMPRDSDAIGLMEAAFAALASIDKNF--K-------W-KENDKEKAISIIAKMATIVANVYRR--KEGNK 142 (377)
T ss_pred CCHHHHHHHHhCCccCCcHHHHHHHHHhhhccCCcc--c-------c-cHHHHHHHHHHHHHHHHHHHHHHHH--HcCCC
Confidence 999999999999999999999999999999865321 1 0 1445689999999999999999996 58988
Q ss_pred cccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccCh
Q psy14235 226 IGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303 (645)
Q Consensus 226 ~~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGA 303 (645)
++.|++++||++||++||.|. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+||||
T Consensus 143 ~~~p~~~~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg-~naST~aarv~aSt~ad~ysav~agi~al~GplHGGA 221 (377)
T PRK14037 143 PRIPEPSDSFAESFLLASFAREPTAEEIKAMDAALILYTDHE-VPASTTAALVAASTLSDMYSCITAALAALKGPLHGGA 221 (377)
T ss_pred CCCCCCCCCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccC-CchHhHHHHHhhccCCCHHHHHHHHHHhccCcccCCh
Confidence 889999999999999999874 7788999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-hcCCcccccCCCCCCCCCccHHHHHHHHHhhC---C-CChHHHHHHH
Q psy14235 304 NQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTL-KSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---P-DDSLFKLVSQ 378 (645)
Q Consensus 304 n~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l-~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~-~~~~~~la~~ 378 (645)
|++|++||+++ + +++++++|+++.+ ++|++||||||||||..|||+++|+++++++. + .+++++++.+
T Consensus 222 ~e~v~~~l~ei----~---~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~ 294 (377)
T PRK14037 222 AEEAFKQFVEI----G---DPNNVEMWFNDKIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIERNSEAKKYFEIAQK 294 (377)
T ss_pred HHHHHHHHHHh----c---ChhhHHHHHHHHHhcCCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999876 3 3688999998765 45589999999999999999999999999874 3 4789999999
Q ss_pred HHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 379 VYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 379 ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+|+++ .++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||...+.+|+||++.|+|+..+
T Consensus 295 ~e~~~----~~~~~~k~l~pNvD~~sa~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~~RP~~~Y~G~~~~ 369 (377)
T PRK14037 295 LEELG----IKQFGSKGIYPNTDFYSGIVFYALGFPV-YMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEHR 369 (377)
T ss_pred HHHHH----HHHhhccCCCCChHHHHHHHHHHcCCCh-hhcchhHHhhhhhHHHHHHHHHHhcCCccccCcceecCCCCC
Confidence 99987 3456779999999999999999999996 899999999999999999999998765799999999997554
No 25
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=1.2e-89 Score=745.08 Aligned_cols=369 Identities=27% Similarity=0.403 Sum_probs=330.4
Q ss_pred CcceEEeeeeee------cCC----CC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy14235 73 GIKGLVCETSVL------DPE----EG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWA 141 (645)
Q Consensus 73 g~~~~~~eiS~i------D~~----~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~ 141 (645)
|+.+..|.||+| ||+ +| |+||||||+||++++||+ ++.+||||+||||+|+|||++|+++|+++|.
T Consensus 10 gv~~~~t~is~i~~~~~idg~~~~~~G~L~yRGy~I~dLa~~~p~~---~~~sFEev~yLLl~G~LPt~~el~~f~~~L~ 86 (406)
T cd06113 10 GVLAGLTNISDVVGYKIIDGEKVPCPGKLYYRGYDVEDLVNGAQKE---NRFGFEETAYLLLFGYLPNKEELEEFCEILS 86 (406)
T ss_pred ceEeecceeeeeeeeeecCCcccCCCCeeeECCCcHHHHHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677888888 899 99 699999999999999875 3578999999999999999999999999999
Q ss_pred hhcCCCHHH-HHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhh-
Q psy14235 142 SRAELPSHV-VTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNT- 219 (645)
Q Consensus 142 ~~~~lp~~v-~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~- 219 (645)
+++.+|+.+ .++++++|. .|||++|+++|++|+.+++.. +..+|+..++++++|||++|+|+|++||..
T Consensus 87 ~~~~lp~~~~~~~i~~~p~-~hpM~~L~a~v~~l~~~~~~~--------~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~ 157 (406)
T cd06113 87 SYRTLPDNFVEDVILKAPS-KDIMNKLQRSVLALYSYDDKP--------DDISLENVLRQSIQLIARLPTIAVYAYQAKR 157 (406)
T ss_pred HhcCCCHHHHHHHHHhCCC-cCHHHHHHHHHHhccccCCCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999986 569999995 899999999999999876531 134689999999999999999999999942
Q ss_pred -hcCCC--ccccCCCCCCHHHHHHHHhCCC---ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhh
Q psy14235 220 -FQGGK--GIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMN 293 (645)
Q Consensus 220 -~~~G~--~~~~p~~~l~~a~nfl~ml~~~---~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~ 293 (645)
+++|+ ++.+|++++||++||++||+|. ++..+++||++||||||||++|+||||+|++|||++|+|+|++|||+
T Consensus 158 ~~~~~~~~~~~~p~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~ad~~~avaagi~ 237 (406)
T cd06113 158 HYYDGESLYIHHPQPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIG 237 (406)
T ss_pred hhccCCCccccCCCCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccCCCHHHHHHHHHH
Confidence 23455 3567999999999999999873 56778999999999999998899999999999999999999999999
Q ss_pred ccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC-----CcccccCCCCCCCCCccHHHHHHHHHhhC-
Q psy14235 294 GLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSG-----QVVPGYGHAVLRKTDPRYTCQREFAQKHL- 367 (645)
Q Consensus 294 aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g-----~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~- 367 (645)
||+||+|||||++|++||+++.+..+++.+++++++||+++++++ ++||||||||||..|||+++|+++++++.
T Consensus 238 al~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~ 317 (406)
T cd06113 238 SLKGPRHGGANIKVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTLSDPRAVVLKKYARSLAK 317 (406)
T ss_pred HccCccccChHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999865666667899999999999876 59999999999999999999999999874
Q ss_pred --CCChHHHHHHHHHHhcCchhhh-hCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCC
Q psy14235 368 --PDDSLFKLVSQVYKVVPPVLIE-TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLP 444 (645)
Q Consensus 368 --~~~~~~~la~~ie~v~~~vl~~-~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~p 444 (645)
+.++++++++++|+++++++.+ +++.|+++||||||+|+++++||||. ++||++|++||++||+||++||...+.+
T Consensus 318 ~~~~~~~~~~~~~ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~~~lG~p~-~~~t~lF~isR~~Gw~AH~~Eq~~~~~~ 396 (406)
T cd06113 318 EKGREEEFALYERIERLAPEVIAEERGIGKTVCANVDFYSGFVYKMLGIPQ-ELYTPLFAVARIVGWCAHRIEELLNSGR 396 (406)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHcCCCh-hhhhhHHHHHhHHHHHHHHHHHHhcCCc
Confidence 4567999999999998776654 58899999999999999999999986 8999999999999999999999876557
Q ss_pred CCCCCcccch
Q psy14235 445 IERPKSLSTN 454 (645)
Q Consensus 445 I~RPrs~y~~ 454 (645)
|+||++.|+|
T Consensus 397 l~RP~~~Y~G 406 (406)
T cd06113 397 IIRPAYKYVG 406 (406)
T ss_pred eeccccccCC
Confidence 9999999986
No 26
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=4.3e-87 Score=716.68 Aligned_cols=354 Identities=23% Similarity=0.357 Sum_probs=327.1
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+++.+|+||++|+++| ++||||||+||+++ .+||||+||||+|++|+++|++.|+.+|.+++.+|
T Consensus 1 ~Gl~gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~---------~~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~lp 71 (362)
T cd06111 1 KGLAGVVADTTAISKVMPETNSLTYRGYPVQDLAEN---------CSFEEVAYLLWNGELPNAAQLAEFSQRERSYRRLD 71 (362)
T ss_pred CCCCCceEecccceEEECCCCeEEECCccHHHHHcc---------CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 489999999999999999987 79999999999997 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+++.++++.+|+++|||++++++|++|+.+|+... +..|+...+++++|||++|+|+|++||+ +.|.+++
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~~--------~~~~~~~~~~a~~lia~~~~i~a~~~~~--~~g~~~~ 141 (362)
T cd06111 72 RNLLSLIASLPKNCHPMDVLRTAVSVLGAEDSETD--------DSSPDANLAKAIRLLAQLPTVVAADIRR--RKGLDPI 141 (362)
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHhhccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCc
Confidence 99999999999999999999999999998876431 2357888999999999999999999995 5888888
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
.|+++++|++||++|+.|. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+|||||+
T Consensus 142 ~p~~~ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~ 220 (362)
T cd06111 142 PPDSDLGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHS-FNASTFTARVITSTLSDIYSAITGAIGALKGPLHGGANE 220 (362)
T ss_pred CCCCCcCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccC-CchhHHHHHHHHccCCCHHHHHHHHHhhccCccccchHH
Confidence 9999999999999999765 7788999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKV 382 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~v 382 (645)
+|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.+++++++++++++
T Consensus 221 ~~~~~l~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~ 293 (362)
T cd06111 221 AVMHMMLEI----D---DPEKAAQWMLDALARKEKVMGFGHRVYKSGDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDA 293 (362)
T ss_pred HHHHHHHHh----C---ChhhHHHHHHHHHhcCCceecCCCCCCCCCCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHH
Confidence 999999876 3 358899999999999999999999999999999999999988763 356899999999998
Q ss_pred cCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 383 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 383 ~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+. +.+|++||||||+|++++.||||. +++|++|++||++||+||++||+..+ +|+||++.|+|+..+
T Consensus 294 ~~-------~~~~l~pNvD~~~a~l~~~lG~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~~ 360 (362)
T cd06111 294 MV-------AAKGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMARITGWTAHIMEQRADN-ALIRPLSEYNGPEQR 360 (362)
T ss_pred HH-------HhcCCCCChHHHHHHHHHHcCcCh-hhhhhHHHHHHHHHHHHHHHHHHHcC-CcccCCceeeCCCCC
Confidence 73 257899999999999999999996 89999999999999999999999987 699999999996543
No 27
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=1.1e-86 Score=715.12 Aligned_cols=353 Identities=25% Similarity=0.360 Sum_probs=323.3
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+.+++|+||+||+++| ++||||||+||+++ .+||||+||||+|+|||++|++.|+++|.+++.+|
T Consensus 7 ~Gl~g~~~~~S~IS~id~~~g~L~YRGydi~dLa~~---------~sFeeva~LL~~G~LP~~~e~~~f~~~L~~~~~~p 77 (369)
T PRK12349 7 PGLDGVIAAETKISFLDTVKGEIVIQGYDLIELSKT---------KEYLDIVHLLLEEHLPNEDEKATLEKKLKEEYAVP 77 (369)
T ss_pred CccCCCeeeeeeceeEeCCCCEEEECCccHHHHHcc---------CCHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCC
Confidence 488999999999999999888 79999999999997 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+.+.++++.+|++.|||++|+++|++++.+|+... +..++...+++++|||++|+|+|++||+ +.|++++
T Consensus 78 ~~v~~~l~~~p~~~~pm~~l~~~vs~l~~~d~~~~--------~~~~~~~~~~a~~lia~~p~i~a~~~r~--~~g~~~~ 147 (369)
T PRK12349 78 EGVFNILKALPKETHPMDGLRTGVSALAGYDNDIE--------DRSLEVNKSRAYKLLSKVPNIVANSYHI--LNNEEPI 147 (369)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcccCcccc--------ccCcHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCC
Confidence 99999999999999999999999999998876532 1234667889999999999999999995 5788888
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
.|+++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|||+||+|||++|+||+||||++
T Consensus 148 ~p~~~l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~-lnaStfa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e 226 (369)
T PRK12349 148 EPLKELSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHE-MPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGANE 226 (369)
T ss_pred CCCcCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcC-ccHHHHHHHHHHccCccHHHHHHHHHHhccCccccChHH
Confidence 9999999999999999875 6788899999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCC-CCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVL-RKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYK 381 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vy-k~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~ 381 (645)
+|++||+++ + +++++++||++.+++|++||||||||| +..|||+++|++.++++. +..+++++++++++
T Consensus 227 ~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GFGH~vy~~~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~ 299 (369)
T PRK12349 227 AVMYMLLEA----G---TVEKFEELLQKKLYNKEKIMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEK 299 (369)
T ss_pred HHHHHHHHc----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999876 3 468999999999999999999999999 668999999999988764 34578888888888
Q ss_pred hcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhH
Q psy14235 382 VVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLV 457 (645)
Q Consensus 382 v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~ 457 (645)
++. +.||++||||||+|+++++||||. +++|++|++||++||+||++||...+ +|+||++.|+|+..
T Consensus 300 ~~~-------~~~gl~pNvD~~~a~l~~~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~ 366 (369)
T PRK12349 300 IME-------KEKGLYPNLDYYAAPVYWMLGIPI-QLYTPIFFSSRTVGLCAHVIEQHANN-RLFRPRVNYIGERH 366 (369)
T ss_pred HHH-------HhcCCCCCcHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceeeCCCc
Confidence 873 257999999999999999999996 89999999999999999999999986 59999999999754
No 28
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1.6e-86 Score=712.94 Aligned_cols=352 Identities=37% Similarity=0.577 Sum_probs=328.1
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|++++.|+||+||+++| ++||||+|+||+++ .+||||+||||+|+||+++|++.|..+|.+++.+|
T Consensus 1 ~Gl~g~~v~~s~is~id~~~g~l~YRG~~i~dL~~~---------~~feeva~LL~~G~lP~~~el~~f~~~L~~~~~~p 71 (358)
T cd06118 1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEK---------SSFEEVAYLLLYGKLPTKEELAEFKKKLASHRALP 71 (358)
T ss_pred CCCCCceeeeeeeeEEeCCCCeEEECCccHHHHHhc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 489999999999999999987 79999999999997 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+.+.++++.+|+++|||++|+++|++++.++++.. +.+++...+++++|||++|+|+|++|++ +.|.++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~~~~l~~~~~~~~--------~~~~~~~~~~a~~lia~~~~i~a~~~~~--~~g~~~~ 141 (358)
T cd06118 72 EHVVEILDLLPKNAHPMDVLRTAVSALGSFDPFAR--------DKSPEARYEKAIRLIAKLPTIAANIYRN--REGLEII 141 (358)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHhhhccCCccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCC
Confidence 99999999999999999999999999998876532 2457888999999999999999999996 6888888
Q ss_pred cCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGF--DNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
.|+++++|++||++|+++ +++..+++||++|||||||| +|+||||+|++|||++|+|+|++||+++|+||+||||++
T Consensus 142 ~p~~~~~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~-~n~Stfa~R~~aSt~ad~~~av~agl~al~GplHGGA~~ 220 (358)
T cd06118 142 APDPDLSYAENFLYMLFGEEPDPEEAKAMDLALILHADHE-GNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANE 220 (358)
T ss_pred CCCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CChHHHHHHHHHccCCCHHHHHHHHHHHccCccccChHH
Confidence 999999999999999988 58889999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHh
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP---DDSLFKLVSQVYKV 382 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~---~~~~~~la~~ie~v 382 (645)
+|++||+++. +++++++||++.+++|++||||||||||..|||+++|+++++++.. .+++++++++++++
T Consensus 221 ~~~~~l~~~~-------~~~~~~~~i~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~ 293 (358)
T cd06118 221 AVLKMLLEIG-------TPENVEAYIWKKLANKRRIMGFGHRVYKTYDPRAKILKELAEELAEEKGDDKLFEIAEELEEI 293 (358)
T ss_pred HHHHHHHHhC-------CchHHHHHHHHHHhcCCeecCCCCCCCCCCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999998874 2488999999999999999999999999999999999999998854 58999999999999
Q ss_pred cCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCccc
Q psy14235 383 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 452 (645)
Q Consensus 383 ~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y 452 (645)
+.+. ...|+++||||||+|+++++||||. +++|++|++||++||+||++||+..+.+|+||+++|
T Consensus 294 ~~~~----~~~r~l~pNvd~~~~~l~~~lg~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~iiRP~~~Y 358 (358)
T cd06118 294 ALEV----LGEKGIYPNVDFYSGVVYKALGFPT-ELFTPLFAVSRAVGWLAHIIEYRENNQRLIRPRAEY 358 (358)
T ss_pred HHHh----hcCCCCCcChHHHHHHHHHHcCcCH-HHHhHHHHHHHHhHHHHHHHHHHhCCCCccCCcccC
Confidence 8652 2237999999999999999999996 899999999999999999999999986799999988
No 29
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=8.3e-87 Score=714.94 Aligned_cols=348 Identities=31% Similarity=0.514 Sum_probs=300.8
Q ss_pred CccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14235 70 GMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (645)
Q Consensus 70 Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~ 148 (645)
||+|+++..|+||+||+++| ++||||+|+||+++ .+||||+||||+|++||++|+++|+++|.+++.+|+
T Consensus 1 Gl~gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~---------~sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe 71 (356)
T PF00285_consen 1 GLRGVPVCETSISFIDGEKGILRYRGYDIEDLAEN---------ASFEEVAYLLWYGELPTAEELEEFSAELKERRALPE 71 (356)
T ss_dssp GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHH---------SBHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--H
T ss_pred CCCCCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhc---------CCHHHHHHHHHhccCCChhhhccchhHHHhhcchhH
Confidence 89999999999999999999 79999999999997 589999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcccc
Q psy14235 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGA 228 (645)
Q Consensus 149 ~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~ 228 (645)
.+.++++++|+++|||++|+++|++|+.++++. ....+|+...+++++++|++|+|+|++|++ +.|+++.+
T Consensus 72 ~v~~~i~~lp~~~~pm~~L~~~vs~l~~~~~~~-------~~~~~~~~~~~~~~~liA~~p~i~a~~~~~--~~g~~~~~ 142 (356)
T PF00285_consen 72 EVIEVIEALPRDAHPMDVLRAAVSALSAFDPDP-------LYDNSPEDVLEDAIRLIAKIPTIVAAIYRH--RRGQPPIP 142 (356)
T ss_dssp HHHHHHHCSTTTS-HHHHHHHHHHHHHHHSTTG-------TCTTSHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS----
T ss_pred HHHHHHhhcCCCCCchHHHHHHHhhhhhhhhcc-------ccccchhHHHHHHHHHhhcchHHHHHHHHH--hCCCCccc
Confidence 999999999999999999999999999877641 123568999999999999999999999997 48999999
Q ss_pred CCCCCCHHHHHHHHh--CCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChH
Q psy14235 229 IDTNKDWSANFTSML--GFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304 (645)
Q Consensus 229 p~~~l~~a~nfl~ml--~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn 304 (645)
|+++++|++||++|| .+. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++||+++|+||+||||+
T Consensus 143 p~~~~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~-~~~St~aaR~~aSt~~~~~~av~agl~al~G~~hgga~ 221 (356)
T PF00285_consen 143 PDPDLSYAENFLYMLGVTGREPDPEEARALDAALVLHADHG-LNPSTFAARVAASTGADLYSAVAAGLAALSGPLHGGAN 221 (356)
T ss_dssp --TTSSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--S-SSHHHHHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHH
T ss_pred cccchHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCC-CCccchhhhhhhccCcchhHHHHhhhhhccCccccccc
Confidence 999999999999999 443 7889999999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHH
Q psy14235 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYK 381 (645)
Q Consensus 305 ~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~ 381 (645)
++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. ..++++++++++|+
T Consensus 222 ~~~~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~ 294 (356)
T PF00285_consen 222 EAAMRMLQEI----G---SPENVEEYVEERLAKGERIPGFGHRVYKNGDPRAEALLALARELGEEFPDGPLVELAEAIEE 294 (356)
T ss_dssp HHHHHHHHHH----S---SGGGHHHHHHHHHHTTSTTTTBCESSSSS--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----H---hhHHHHHHHHHHHhccccccccCCCcCCCCCCChHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 9999999887 3 478999999999999999999999999999999999999999987 78999999999999
Q ss_pred hcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCC
Q psy14235 382 VVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERP 448 (645)
Q Consensus 382 v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RP 448 (645)
++.++ ++.++++||||||+|+++++||||. +++|++|++||++||+||++||+..+.+|+||
T Consensus 295 ~~~~~----~~~~~l~pNvd~~~a~l~~~lG~p~-~~~~~if~~~R~~Gw~AH~~Eq~~~~~~i~RP 356 (356)
T PF00285_consen 295 AAPED----FKERKLYPNVDFYSAALLRALGFPP-ELFTAIFALSRTAGWIAHILEQRQLNNKIIRP 356 (356)
T ss_dssp HHHHH----HHHHTESB-THHHHHHHHHHTT--G-GGHHHHHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHH----HhhccccCchhhHHHHHHHHHhcch-hhchHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 99654 3456899999999999999999997 89999999999999999999999955589999
No 30
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=8.1e-86 Score=708.88 Aligned_cols=355 Identities=27% Similarity=0.442 Sum_probs=328.7
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+++..|+||++|+++| ++||||||+||+++ .+||||+||||+|++|+++|++.|...|..++.+|
T Consensus 1 ~Gl~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~---------~~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (368)
T TIGR01800 1 KGLEGVIADETALSTIDGSEGILTYRGYDIEDLAEH---------ASFEEVAYLLLHGKLPTRSELRKFKTELAKLRGLP 71 (368)
T ss_pred CCCCCCeeeeeeceEEECCcceEEECCeeHHHHHhc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCC
Confidence 489999999999999999999 69999999999997 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+++.++++.+|+++|||++|+++|++|+.+++.. + +..++...+++++|||++|+|+|++||+ +.|+++.
T Consensus 72 ~~~~~~~~~~p~~~~pm~~l~~~ls~l~~~d~~~--~------~~~~~~~~~~a~~lia~~p~i~a~~~~~--~~g~~~~ 141 (368)
T TIGR01800 72 DEVIELIEALPAESHPMDALRTAVSYLGALDPEA--F------GHTPEEARDIAIRLIAKLPTIVAYWYRI--RNGLEIV 141 (368)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHhhccCccc--c------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCc
Confidence 9999999999999999999999999999887653 1 1235678899999999999999999996 5788889
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
.|+++++|++||++|+++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+||||++
T Consensus 142 ~p~~~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~ 220 (368)
T TIGR01800 142 APKEDDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHE-FNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANE 220 (368)
T ss_pred CCCCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CchHHHHHHHHhccCCCHHHHHHHHHhhcCCccccCHHH
Confidence 9999999999999999875 6788999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKV 382 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~v 382 (645)
+|++||.++. +.+++++||++.+++|++||||||+|||..|||+++|+++++++. +.+++++++++++++
T Consensus 221 ~~~~~l~~i~-------~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~ 293 (368)
T TIGR01800 221 AVMAMLDEIG-------DPDKAEAWIRKALENKERIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDV 293 (368)
T ss_pred HHHHHHHHhc-------ChHHHHHHHHHHHHCCCccCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 9999998763 357899999999999999999999999999999999999999874 467899999999998
Q ss_pred cCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHhh
Q psy14235 383 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 459 (645)
Q Consensus 383 ~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~ 459 (645)
+.+ .||++||||||+|+++++||||. +++|++|++||++||+||++||...+ +|+||++.|+|+..+.
T Consensus 294 ~~~-------~~~l~pNvD~~~a~l~~~lg~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~~~ 361 (368)
T TIGR01800 294 MEK-------EKGIYPNVDFYSGSVYYSMGIPT-DLFTPIFAMSRVSGWTAHIIEQVENN-RLIRPRADYVGPEERK 361 (368)
T ss_pred HHH-------hcCCCCChHHHHHHHHHHcCcCH-HHhhhHHHHHHHHHHHHHHHHHHhcC-CccCccccccCCCCCC
Confidence 843 47999999999999999999986 89999999999999999999999877 5999999999976654
No 31
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=1.5e-85 Score=704.55 Aligned_cols=350 Identities=27% Similarity=0.425 Sum_probs=325.2
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+++++|+||++|+++| ++|||||++||+++ .+||||+||||+|++|+++|++.|..+|.+++.+|
T Consensus 1 ~Gl~g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~---------~~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p 71 (356)
T cd06110 1 KGLEGVIAADSKISYIDGDAGILIYRGYDIHDLAEN---------STFEEVAYLLWNGELPTAEELDAFKAQLAAERELP 71 (356)
T ss_pred CCCCCCeeeeeeceEEECCCCeEEECCeeHHHHHhc---------CCHHHHHHHHHcCcCCCHHHHHHHHHhhhhccCCC
Confidence 489999999999999999999 59999999999987 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+.+.++++.+|++.|||++|++++++++..++... +..|+..++++++|||++|+|+|++|++ +.|.++.
T Consensus 72 ~~v~~~~~~~p~~~~pm~~l~~~v~~l~~~~~~~~--------~~~~~~~~~~a~~lla~~p~i~a~~~~~--~~~~~~~ 141 (356)
T cd06110 72 AEIIDLLKLLPKDAHPMDVLRTAVSALALYDPEAD--------DMSREANLRKAIRLIAKMPTIVAAFHRI--RNGLEPV 141 (356)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHHHhhhhcCCCcc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCC
Confidence 99999999999999999999999999998765321 2357888999999999999999999884 5788888
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
.|+++++|++||++|+++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+||||++
T Consensus 142 ~p~~~~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg-~n~Stfa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~ 220 (356)
T cd06110 142 APDPDLSHAANFLYMLTGEKPSEEAARAFDVALILHADHE-LNASTFAARVVASTLSDMYSAVTAAIGALKGPLHGGANE 220 (356)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHH
Confidence 9999999999999999865 6788899999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKV 382 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~v 382 (645)
.|++||+++. +.+++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++|++
T Consensus 221 ~~~~~l~~~~-------~~~~~~~~v~~~~~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~ 293 (356)
T cd06110 221 RVMKMLLEIG-------SVDNVAAYVKDKLANKEKIMGFGHRVYKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQA 293 (356)
T ss_pred HHHHHHHHhC-------CHHHHHHHHHHHHhcCCeecCCCCccCCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999998873 468899999999999999999999999999999999999999884 467899999999998
Q ss_pred cCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccch
Q psy14235 383 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTN 454 (645)
Q Consensus 383 ~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~ 454 (645)
+.+ .||++||||||+|+++++||||. +++|++|++||++||+||++||+..+ +|+||+++|+|
T Consensus 294 ~~~-------~~~l~pNvd~~~a~l~~~lg~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G 356 (356)
T cd06110 294 MRD-------EKGLNPNVDFYSASVYYMLGIPV-DLFTPIFAISRVSGWCAHILEQYFNN-RLIRPRAEYVG 356 (356)
T ss_pred HHH-------ccCCCcChHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHHcC-CccCCccccCC
Confidence 844 47999999999999999999996 89999999999999999999999986 59999999987
No 32
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=8.8e-86 Score=701.50 Aligned_cols=338 Identities=21% Similarity=0.303 Sum_probs=294.8
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHH---HHHHHHHhhc
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQ---ALSKSWASRA 144 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~---~f~~~L~~~~ 144 (645)
.|++|+.+..|+||+|||++| ++||||+|+||+++ .+||||+||||+|+|||+.|.. .|+..+.
T Consensus 3 ~GL~~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~~---------~sFeEva~LL~~G~LP~~~~~~~~~~~~~~~~--- 70 (353)
T PRK12350 3 PGLEGVVAFETEIAEPDGDGGALRYRGVDIEDLVGR---------VTFEDVWALLVDGRFGPGLPPAEPFPLPVHLG--- 70 (353)
T ss_pred CCCCCceeEeeeCcceeCCCCEEEECCccHHHHhcc---------CCHHHHHHHHHCCCCCCcchhhhccchHHHhh---
Confidence 489999999999999999999 59999999999998 5899999999999999987544 3333322
Q ss_pred CCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCC-
Q psy14235 145 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGG- 223 (645)
Q Consensus 145 ~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G- 223 (645)
..+..+.+.+.. .|||+.+++++ +. + ..+++++|+|++|+|+|++||+ ++|
T Consensus 71 ~~~~~~~~~~~~----~~~~~~l~~~~------~~------------~----~~~~~~rliA~~pti~a~~~r~--~~g~ 122 (353)
T PRK12350 71 DARVDVQAALAM----LAPVWGFRPLL------DI------------D----DLTARLDLARASVMALSAVAQS--ARGI 122 (353)
T ss_pred ccchhhhhhHHH----hhHHHHHHhhc------CC------------C----CHHHHHHHHHHHHHHHHHHHHH--HcCC
Confidence 233333333332 45777666643 11 0 0246789999999999999995 588
Q ss_pred CccccCCCCCCHHHHHHHHhCCC-----ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccc
Q psy14235 224 KGIGAIDTNKDWSANFTSMLGFD-----NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGP 298 (645)
Q Consensus 224 ~~~~~p~~~l~~a~nfl~ml~~~-----~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GP 298 (645)
+++++|+++++|++||++||.+. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||+||+||
T Consensus 123 ~~~i~p~~~ls~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg-~naSTfaaRv~aSt~adlysav~agi~aL~Gp 201 (353)
T PRK12350 123 GQPAVPQREIDHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHG-MNASTFTARVIASTGADVAAALSGAIGALSGP 201 (353)
T ss_pred CCCcCCCCCCCHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCC-CCcchHHHHHHhccCCcHHHHHHHHHhhcCCC
Confidence 78889999999999999999765 5678999999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHH
Q psy14235 299 LHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQ 378 (645)
Q Consensus 299 lHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ 378 (645)
+|||||++|++||+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +++++++++
T Consensus 202 lHGGA~e~v~~ml~ei----~---~~~~~~~~v~~~l~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~--~~~~~ia~~ 272 (353)
T PRK12350 202 LHGGAPARVLPMLDAV----E---RTGDARGWVKGALDRGERLMGFGHRVYRAEDPRARVLRATAKRLG--APRYEVAEA 272 (353)
T ss_pred cccChHHHHHHHHHHh----C---ChhhHHHHHHHHHHCCCccccCCCCCCCCCCCCHHHHHHHHHHhC--ChHHHHHHH
Confidence 9999999999999876 3 368899999999999999999999999999999999999999986 689999999
Q ss_pred HHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 379 VYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 379 ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+|+++.+.+.+++..|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||++.|+|+.+.
T Consensus 273 le~~~~~~~~~~~~~r~l~pNVDfysa~v~~~lGip~-~~ft~lFai~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~~~ 350 (353)
T PRK12350 273 VEQAALAELRERRPDRPLETNVEFWAAVLLDFAGVPA-HMFTAMFTCGRTAGWSAHILEQKRTG-RLVRPSARYVGPAPR 350 (353)
T ss_pred HHHHHHHHHHHhcCCCCCCcChHHHHHHHHHHcCcCh-hhhcchHHhhhHHHHHHHHHHHHhcC-CCcCCCcceeCCCCC
Confidence 9999977655677789999999999999999999996 89999999999999999999999987 599999999997654
No 33
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=3e-85 Score=704.87 Aligned_cols=356 Identities=23% Similarity=0.346 Sum_probs=329.0
Q ss_pred cccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcC
Q psy14235 67 MYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE 145 (645)
Q Consensus 67 ~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~ 145 (645)
+..||+|+.+..|+||++|+++| ++||||||+||+++ .+||||+||||+|++|+++|++.|...|.+++.
T Consensus 9 ~~~GL~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~---------~sfeeva~LL~~G~lP~~~el~~f~~~l~~~~~ 79 (375)
T PRK14033 9 IKKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAAR---------CSFEEVAYLLWNGELPTDAELALFSQRERAYRR 79 (375)
T ss_pred CCCCCCCceEeeccCeEEECCCCeEEECCccHHHHHhc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Confidence 55799999999999999999887 79999999999997 589999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCc
Q psy14235 146 LPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKG 225 (645)
Q Consensus 146 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~ 225 (645)
+|+.+.++++.+|+++|||++++++|++++.+|+... +..++...+++++|||++|+|+|++||+ +.|.+
T Consensus 80 ~p~~v~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~~--------~~~~~~~~~~a~~lia~~~~i~a~~~~~--~~g~~ 149 (375)
T PRK14033 80 LDRSVLSLIDKLPTTCHPMDVVRTAVSYLGAEDPEAD--------DSSPEANLAKALRLFAVLPTIVAADQRR--RRGLD 149 (375)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCC
Confidence 9999999999999999999999999999998876531 2346788899999999999999999995 58888
Q ss_pred cccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccCh
Q psy14235 226 IGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303 (645)
Q Consensus 226 ~~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGA 303 (645)
+..|+++++|++||++|+.|. ++..+++||++|||||||| +|+||||+|++|||++|+|+||+|||++|+||+||||
T Consensus 150 ~~~p~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-ln~StfaaRv~aSt~adl~~av~agl~al~GplHGGA 228 (375)
T PRK14033 150 PIAPRSDLGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHS-FNASTFTARVITSTLSDIYSAVTGAIGALKGPLHGGA 228 (375)
T ss_pred ccCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCCHHHHHHHHHhhccCccccCh
Confidence 889999999999999999765 6788999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHH
Q psy14235 304 NQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVY 380 (645)
Q Consensus 304 n~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie 380 (645)
+++|++||+++. +++++++||++.+++|++||||||+|||..|||+++|++.+.++. +.+++++++++++
T Consensus 229 ~e~~~~~l~ei~-------~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~ 301 (375)
T PRK14033 229 NEAVMHTMLEIG-------DPARAAEWLRDALARKEKVMGFGHRVYKHGDSRVPTMKAALRRVAAVRDGQRWLDIYEALE 301 (375)
T ss_pred HHHHHHHHHHhC-------ChhHHHHHHHHHHhCCCceecCCCCCCCCCCchHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 999999998763 468899999999999999999999999999999999999988774 4578999999999
Q ss_pred HhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 381 KVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 381 ~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+++.+ .+|++||||||+|+|++.||||. +++|++|++||++||+||++||+..+ +|+||++.|+|+..+
T Consensus 302 ~~~~~-------~~gl~pNvD~~~a~l~~~lGip~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~ 370 (375)
T PRK14033 302 KAMAE-------ATGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMSRITGWTAHIMEQRASN-ALIRPLSEYNGPEQR 370 (375)
T ss_pred HHHHH-------HhCCCCCcHHHHHHHHHHcCcCc-hhhhHHHHHHHHHHHHHHHHHHHhcC-CccccCceecCCCCC
Confidence 98833 47899999999999999999996 89999999999999999999999987 599999999997544
No 34
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=5.4e-70 Score=562.88 Aligned_cols=259 Identities=42% Similarity=0.672 Sum_probs=239.3
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+++..|+||++|+++| ++||||||+||+++ .+||||+||||+|+||
T Consensus 1 ~gl~~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~---------~~f~ev~~LL~~G~lP------------------- 52 (265)
T cd06101 1 PGLRGVAALESEISVIDGDEGGLRYRGYPIEELAEN---------SSFEEVAYLLLTGELP------------------- 52 (265)
T ss_pred CCCCCcceeeeEEEEEeCCCCEEEECCeeHHHHHhc---------CCHHHHHHHHHcCCCC-------------------
Confidence 489999999999999999998 79999999999998 5899999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
T Consensus 53 -------------------------------------------------------------------------------- 52 (265)
T cd06101 53 -------------------------------------------------------------------------------- 52 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
+|++||++|+.+. ++.++++||.+|||||||| +|+||||+|++|||++|+|+|++|||++|+||+||||++
T Consensus 53 ------~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg-~naST~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e 125 (265)
T cd06101 53 ------SYAENFLYMLGGEEPDPEFAKAMDLALILHADHE-GNASTFTARVVGSTLSDPYSAIAAAIAALKGPLHGGANE 125 (265)
T ss_pred ------cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CchHHHHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHH
Confidence 6889999999874 7889999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHh
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP---DDSLFKLVSQVYKV 382 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~---~~~~~~la~~ie~v 382 (645)
+|++||+++.+. ..++++++|++.+++|++||||||||||..|||+++|+++++++.. +++++++++++|++
T Consensus 126 ~~~~~l~~i~~~-----~~~~~~~~v~~~~~~~~~i~GFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~ 200 (265)
T cd06101 126 AVLKMLEEIGTP-----KNEPAEAYIRKKLNSKRVLMGFGHRVYKKYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKI 200 (265)
T ss_pred HHHHHHHHhCcc-----ccccHHHHHHHHHhcCCCccCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 999999987531 2367899999999999999999999999999999999999998854 58999999999998
Q ss_pred cCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCccc
Q psy14235 383 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 452 (645)
Q Consensus 383 ~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y 452 (645)
+.+. ...|+++||||||+|+++++||||+ +++|++|++||++||+||++||+..+.+|+||++.|
T Consensus 201 ~~~~----~~~k~l~pNvd~~~a~v~~~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y 265 (265)
T cd06101 201 APEV----LYEKKLYPNVDFYSGVLYKAMGFPT-ELFTPLFAVSRAVGWLAHLIEQREDGQRIIRPRAEY 265 (265)
T ss_pred HHHH----hhccCCCCChHHHHHHHHHHhCCCh-HhhhhHHHHHhHhHHHHHHHHHHhcCCCccCCCccC
Confidence 8552 2238999999999999999999996 899999999999999999999999986699999987
No 35
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=4.3e-64 Score=521.28 Aligned_cols=266 Identities=23% Similarity=0.341 Sum_probs=234.9
Q ss_pred CcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHH
Q psy14235 73 GIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVT 152 (645)
Q Consensus 73 g~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~ 152 (645)
|.+++.|.||.+++ ++++|||||+.||+++ .+||||++|||.|++|
T Consensus 17 g~~~~~t~It~i~~-~~~~yRG~da~~L~~~---------~~~e~va~LLw~g~~~------------------------ 62 (282)
T cd06102 17 GEPVLESAITLITE-GRLFYRGRDAVELAET---------ATLEEVAALLWDGDEA------------------------ 62 (282)
T ss_pred CCceEEeeeEEEeC-CeeEEcCccHHHHHhc---------CCHHHHHHHHHcCCch------------------------
Confidence 56788999999985 4499999999999998 4899999999999999
Q ss_pred HHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCC
Q psy14235 153 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 232 (645)
Q Consensus 153 ~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~ 232 (645)
. +++ ..+++.+ .+ .+.++
T Consensus 63 ---------------~----------------------------------~~l---~~~~~~~------~~----~~~~~ 80 (282)
T cd06102 63 ---------------A----------------------------------RLL---RLLAAAL------LG----AAPSD 80 (282)
T ss_pred ---------------H----------------------------------HHH---HHHHHHh------cc----CCCCc
Confidence 0 011 1111121 01 23457
Q ss_pred CCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHH
Q psy14235 233 KDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLK 312 (645)
Q Consensus 233 l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~ 312 (645)
.++++||++||++ ++..+++||++|||+|||| +|+||||+|++|||++|+|+|++||+++|+||+||||++.|++||+
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~l~~~LVL~ADHg-ln~St~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~ 158 (282)
T cd06102 81 APVHRRLARAWGL-DPAAADLLRRALVLLADHE-LNASTFAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLD 158 (282)
T ss_pred ccHHHHHHHHhcC-CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Confidence 8999999999976 5678899999999999999 9999999999999999999999999999999999999999999998
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCC
Q psy14235 313 KLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 392 (645)
Q Consensus 313 ~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k 392 (645)
++.+ .++++++|++.+++|++||||||++||..|||+++|+++++++.. +++++++++++++.+
T Consensus 159 e~~~-------~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~------- 222 (282)
T cd06102 159 EALR-------AGDAEAAVRERLRRGEALPGFGHPLYPDGDPRAAALLAALRPLGP--AAPPAARALIEAARA------- 222 (282)
T ss_pred HhcC-------CccHHHHHHHHHHcCCcccCCCCCCCCCCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHH-------
Confidence 8742 467899999999999999999999999999999999999999865 999999999999854
Q ss_pred CCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccch
Q psy14235 393 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTN 454 (645)
Q Consensus 393 ~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~ 454 (645)
.++++||||||+|++++.||||+ ++++++|++||++||+||++||+..+ +++||++.|+|
T Consensus 223 ~~gl~pNvD~a~a~l~~~lG~p~-~~~~~lF~~~R~~GwiAH~~Eq~~~~-~liRP~~~Y~G 282 (282)
T cd06102 223 LTGARPNIDFALAALTRALGLPA-GAAFALFALGRSAGWIAHALEQRAQG-KLIRPRARYVG 282 (282)
T ss_pred HHCCCCChHHHHHHHHHHcCCCh-hhcchHHHHHHHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 36899999999999999999996 88999999999999999999999997 59999999986
No 36
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=1.1e-56 Score=450.62 Aligned_cols=208 Identities=41% Similarity=0.629 Sum_probs=190.8
Q ss_pred CHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHH
Q psy14235 234 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 311 (645)
Q Consensus 234 ~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L 311 (645)
+|++||++|+++. +++.+++||.+|||||||| +|+||||+|++|||++|+|+|++|||++++||+||||+++|++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg-~~~St~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHE-GNASTFTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CchhhHHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 6899999999884 7889999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCC---CChHHHHHHHHHHhcCchhh
Q psy14235 312 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP---DDSLFKLVSQVYKVVPPVLI 388 (645)
Q Consensus 312 ~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~---~~~~~~la~~ie~v~~~vl~ 388 (645)
+++.+. ..++++++|++.+++|++||||||||||..|||+++|+++++++.. .++++++++++|+++.+.
T Consensus 80 ~e~~~~-----~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~-- 152 (213)
T cd06099 80 EEIGTP-----KNEPAEAYIRKKLESKRVIMGFGHRVYKKYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEV-- 152 (213)
T ss_pred HHhCCc-----ccccHHHHHHHHHhCCCcccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--
Confidence 887421 2367899999999999999999999999999999999999998853 359999999999988552
Q ss_pred hhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCccc
Q psy14235 389 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 452 (645)
Q Consensus 389 ~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y 452 (645)
.+.|+++||||||+|+++++||||+ +++|++|++||++||+||++||+..+.+|+||++.|
T Consensus 153 --~~~r~l~~Nvd~~~a~l~~~lG~p~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~~~l~RP~~~Y 213 (213)
T cd06099 153 --LYEKKLYPNVDFYSGVLYKAMGFPT-ELFTPLFAVARAVGWLAHLIEQLEDNFKIIRPRSEY 213 (213)
T ss_pred --hhccCCCCChHHHHHHHHHHcCcCH-HhhhHHHHHHHHHHHHHHHHHHHhCCCCccCCcccC
Confidence 2248999999999999999999996 899999999999999999999999986799999987
No 37
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=1.1e-55 Score=456.26 Aligned_cols=245 Identities=22% Similarity=0.256 Sum_probs=217.3
Q ss_pred EEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhc
Q psy14235 77 LVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNN 156 (645)
Q Consensus 77 ~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~ 156 (645)
..|.||++|+++ ++||||+|.||+++ .+|+|++||||+|++|+++|++
T Consensus 9 ~~T~i~~~~~~~-l~yrG~~~~dL~~~---------~sf~e~~~lll~G~lP~~~e~r---------------------- 56 (263)
T PRK06224 9 WRTSISDVTPEE-IYVRGYDLEDLIGK---------LSFTDMIFLLLRGRLPTPNEAR---------------------- 56 (263)
T ss_pred CceeeeeecCCe-eEECCccHHHHhhc---------CCHHHHHHHHHcCCCCCHHHHH----------------------
Confidence 467889999876 99999999999987 4899999999999999976533
Q ss_pred CCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHH
Q psy14235 157 FPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWS 236 (645)
Q Consensus 157 lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a 236 (645)
T Consensus 57 -------------------------------------------------------------------------------- 56 (263)
T PRK06224 57 -------------------------------------------------------------------------------- 56 (263)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHH
Q psy14235 237 ANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQ 316 (645)
Q Consensus 237 ~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~ 316 (645)
+|+.+||++|||| +|+||||+|++|||++|+|+|++||++++ ||+||||+++|++||.++..
T Consensus 57 ----------------~f~a~Lv~~adHg-~~~St~aar~~ast~~~l~~av~agl~a~-G~~hgGa~~~a~~~l~e~~~ 118 (263)
T PRK06224 57 ----------------LLDAVLVALVDHG-LTPSAAAARMTASGGESLQGAVAAGLLAL-GSVHGGAGEQAAELLQEIAA 118 (263)
T ss_pred ----------------HHHHHHHHHhccC-CCcHHHHHHHHHhcCccHHHHHHHHHhhc-ccccCChhHHHHHHHHHHHh
Confidence 3555689999999 89999999999999999999999999999 99999999999999999986
Q ss_pred HhCCCcc-hhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCC
Q psy14235 317 QVGDNVS-EEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKN 395 (645)
Q Consensus 317 ~ig~~~s-~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~ 395 (645)
..+++.+ .++++++|++.+++|++||||||++||..|||+++|+++++++...++++++++++++++.+ .+.|+
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~~DPRa~~L~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 193 (263)
T PRK06224 119 AADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKPVDPRAPRLLALAREAGVAGRHCRLAEALEAALAA-----AKGKP 193 (263)
T ss_pred hccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-----hcCCC
Confidence 5553223 35799999999999999999999999999999999999999988778999999999998854 23477
Q ss_pred CCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCC------cccchhhHh
Q psy14235 396 PWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPK------SLSTNDLVK 458 (645)
Q Consensus 396 l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPr------s~y~~~~~~ 458 (645)
++||||+|+|+++++||||. +++|++|++||++||+||++||+..+. .+||. ..|+|+-++
T Consensus 194 l~~Nvd~~~a~l~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~~~~~-~~r~~~~~~~~~~Y~G~~~r 260 (263)
T PRK06224 194 LPLNVDGAIAAILADLGFPP-ALARGLFVISRAAGLVAHVWEELQQPI-GFRIWDPAEEAVEYTGPPPR 260 (263)
T ss_pred CCccHHHHHHHHHHHcCCCh-HHHhHHHHHHHHHHHHHHHHHHHhCCC-CcCCCCChhhcceecCCCCC
Confidence 99999999999999999986 899999999999999999999999874 55555 799986543
No 38
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=5.9e-48 Score=433.51 Aligned_cols=182 Identities=25% Similarity=0.346 Sum_probs=165.7
Q ss_pred HHHHHHHHHhccCCCCCcch-hhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHH
Q psy14235 252 ELMRLYLTIHSDHEGGNVSA-HTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEF 330 (645)
Q Consensus 252 ~~l~~~LiLhADHeg~n~ST-~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~ 330 (645)
++||++|||+|||| +|+|| |++|++|||++|+|+|++||+++| ||+||||++.|++||+++.+ +..++++|
T Consensus 401 ~~ld~~Lvl~ADHG-~~aSt~~aarv~AStg~dl~savaaGl~al-Gp~hGGA~e~a~~~l~ei~~------~~~~~~~~ 472 (608)
T PLN02522 401 KFIEMCIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD------RGLTPYEF 472 (608)
T ss_pred HHHHHHHHHhccCC-CCccHHHHHHHhhccCCcHHHHHHHHHHhc-CCcccchHHHHHHHHHHHhc------cccCHHHH
Confidence 47888999999999 99999 589999999999999999999999 99999999999999998753 12478999
Q ss_pred HHHHHhcCCcccccCCCCC--CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHH
Q psy14235 331 IWNTLKSGQVVPGYGHAVL--RKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLL 408 (645)
Q Consensus 331 v~~~l~~g~~IpGFGH~Vy--k~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~ 408 (645)
|++.+++|++|||||||+| ++.|||+++|+++++++....+++++++++|+++.+ +.|+++||||+|+|+++
T Consensus 473 V~~~~~~~~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~a~~vE~~~~~------~~k~L~~NVDga~a~i~ 546 (608)
T PLN02522 473 VEGMKKKGIRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEYAVQVETYTLS------KANNLVLNVDGAIGSLF 546 (608)
T ss_pred HHHHHhCCCccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHHHHHHHHHHhh------ccCCCCcCcHhHHHHHH
Confidence 9999999999999999999 577999999999999998888999999999998633 35899999999999999
Q ss_pred HHcCCCCccccc--------------eeeeecchhhhhHHHHHHHHhCCCCCCC
Q psy14235 409 QYYGLKEMNYYT--------------VLFGVSRALGVLASLIWDRALGLPIERP 448 (645)
Q Consensus 409 ~~lGlp~~~~~t--------------~lFavsR~~GwlAH~ie~~~~~~pI~RP 448 (645)
.+||+|. ++|| ++|++||++||+||++||+...+|++|-
T Consensus 547 ~~lg~p~-~~ft~~e~~~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~~~~~~r~ 599 (608)
T PLN02522 547 LDLLAGS-GMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599 (608)
T ss_pred HHcCCCc-ccCccccccccccccccceEEEeehHHHHHHHHHHHHHhhCCcccC
Confidence 9999985 7888 8999999999999999999888777773
No 39
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=2.1e-48 Score=394.33 Aligned_cols=209 Identities=23% Similarity=0.261 Sum_probs=188.7
Q ss_pred CCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccC-CChHHHHHHhhhccccccccChHHHH
Q psy14235 231 TNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSAL-SDPYLSFAAGMNGLAGPLHGLANQEV 307 (645)
Q Consensus 231 ~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~-ad~y~avaAgl~aL~GPlHGGAn~~v 307 (645)
.+.+|.++|++|+.|. ++...++|+.+|+++||||.+|+|||++|+++||+ +|+|+|++||++++ ||+||||++.+
T Consensus 9 ~~~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~~~~~~~vaag~~a~-G~~hgga~e~~ 87 (227)
T cd06100 9 GKISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGPEDLQSAVAAGLLGI-GDRFGGAGEGA 87 (227)
T ss_pred hCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCCccHHHHHHHHHhcc-CCcccChHHHH
Confidence 3579999999999875 66788999999999999994499999999999999 99999999999999 99999999999
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchh
Q psy14235 308 LIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVL 387 (645)
Q Consensus 308 ~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl 387 (645)
++||+++.+..++ ..+++++||++.+++|++||||||++||..|||++.|+++++++...+++++++.++++++.+
T Consensus 88 ~~~l~~~~~~~~~--~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-- 163 (227)
T cd06100 88 ARLFKEAVDSGDA--LDAAAAEFVAEYRAAKKRIPGFGHPVHKNPDPRVPRLLELARELGPAGPHLDYALAVEKALTA-- 163 (227)
T ss_pred HHHHHHHHhcccc--hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHHHh--
Confidence 9999998753221 347899999999999999999999999999999999999999998788999999999998744
Q ss_pred hhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCC
Q psy14235 388 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPK 449 (645)
Q Consensus 388 ~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPr 449 (645)
.+.|+++||||+|+|+++++||||+ ++++++|++||++||+||++||+..+. ..||.
T Consensus 164 ---~~~~~l~~Nvd~~~a~~~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~~~~~-~~~~~ 220 (227)
T cd06100 164 ---AKGKPLPLNVDGAIAAILLDLGFPP-GALRGLFVLGRSPGLIAHALEEKRLGQ-PLYRH 220 (227)
T ss_pred ---ccCCCCcccHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCC
Confidence 1346899999999999999999997 899999999999999999999999974 55553
No 40
>KOG1670|consensus
Probab=100.00 E-value=3.9e-41 Score=328.28 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=120.1
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCC---Ccccch----h
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKR---FSICIS----L 533 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~---~~~~~W----l 533 (645)
.+++|+||+|||+ ||++||||++||.|+.+|||+|||+||+||||||+|++||||++.++|+ ..|++| |
T Consensus 57 ~Lk~v~tF~TVee----FW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~GGrW~~~~~k~~k~~lD~~WL~tLl 132 (212)
T KOG1670|consen 57 MLKEVTTFDTVEE----FWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKNGGRWLITVPKSGKAELDELWLETLL 132 (212)
T ss_pred HhhhccccccHHH----HHHHHhccCChhhCCccccHHHHhcCCCccccCccccCCCeEEEEecCcchhhHHHHHHHHHH
Confidence 4788999999999 9999999999999999999999999999999999999999999999965 458999 8
Q ss_pred hhcccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcCCcccccccceeeeCc
Q psy14235 534 THSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHPDMRLSKQGVVYFVGN 602 (645)
Q Consensus 534 ~~ige~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~~~~~~~~~~~y~~~~ 602 (645)
++|||||+ ++++|||+||++|.+ +++|||||+++++++.. +|+.++|++|.- ....+.|+.|.
T Consensus 133 alIGE~fd-~~deICGaV~NiR~k--~~KISvWT~~~~ne~~~l~IG~~~Ke~L~~---~~~~i~y~~H~ 196 (212)
T KOG1670|consen 133 ALIGEQFD-HSDEICGAVVNIRGK--GDKISVWTKNAGNEEAVLRIGRVLKEVLGL---PRDVIGYQLHK 196 (212)
T ss_pred HHHhhhcc-ccccceeEEEEeccC--CceEEEEecCCCchHHHHHHHHHHHHHhCC---CcceEEEEech
Confidence 99999998 889999999999999 89999999999998765 799999999843 33566777773
No 41
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs. eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....
Probab=100.00 E-value=5.2e-34 Score=275.53 Aligned_cols=120 Identities=22% Similarity=0.324 Sum_probs=108.9
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCC---Ccccch----h
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKR---FSICIS----L 533 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~---~~~~~W----l 533 (645)
++++|++|+|||+ ||++|++|++|++|+.+++|||||+||+||||||+|++||+|+|++++. ..+++| |
T Consensus 25 ~l~~i~~f~TvE~----Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~i~~~~~~~~~~~~~W~~lll 100 (165)
T PF01652_consen 25 SLKPIGTFSTVEE----FWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWIIRIKKKNKEQVDEIWENLLL 100 (165)
T ss_dssp GEEEEEEEEEHHH----HHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEEEEEETTCHHTHHHHHHHHHH
T ss_pred hceEEEEEEeHHH----HHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEEEEEcCccchhHHHHHHHHHH
Confidence 6899999999999 9999999999999999999999999999999999999999999999998 789999 8
Q ss_pred hhcccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCc-chhhHHHHhhc
Q psy14235 534 THSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQ-SGLFVTRKSLH 586 (645)
Q Consensus 534 ~~ige~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~-~~i~~~~k~~l 586 (645)
++|||+|+..+++|||||+|+|++ +++|+||++++++++. .++.+++++++
T Consensus 101 ~~IGe~~~~~~~~I~Gi~~s~r~~--~~~i~iW~~~~~~~~~~~~i~~~i~~~l 152 (165)
T PF01652_consen 101 AVIGEQFDEDGDEICGIVLSVRKN--GIRISIWNKDSSDEDAQNRIGKKIKEIL 152 (165)
T ss_dssp HHHTTTSCCGGGGEEEEEEEEESS--EEEEEEEESSTT-HHHHHHHHHHHHHHH
T ss_pred HHhhcccccCCCcceEEEEEEecC--CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999975447899999999998 8999999999877544 56888899998
No 42
>KOG1669|consensus
Probab=100.00 E-value=3.9e-34 Score=271.01 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=112.6
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCCCcccch----hhhc
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICIS----LTHS 536 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~~~~~~W----l~~i 536 (645)
++|+|++|.|||+ ||.+|.|+++|+.|+...|+|+||+||+|+|||++|.|||+|+|+++|....++| |+++
T Consensus 55 ~ik~i~t~~SvE~----fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN~nGgkWiirlkK~vs~R~wE~LLlal~ 130 (208)
T KOG1669|consen 55 NIKSIGTFESVEQ----FWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKANCNGGKWIIRLKKGVSQRYWENLLLALC 130 (208)
T ss_pred HhHhheeeeeHHH----HHHHHHHhcCccccCCceeehhhhccCcccccCcCCCCCCeEEEEehHHHHHHHHHHHHHHHH
Confidence 6788999999999 9999999999999999999999999999999999999999999999999999999 8999
Q ss_pred ccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcC
Q psy14235 537 LGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHP 587 (645)
Q Consensus 537 ge~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~ 587 (645)
||||. ..++|||+|+|+|.+ +|+|||||+|+++.... +|.+.+|..|+
T Consensus 131 geqf~-~~e~icGaV~svr~n--ediiSiWnRna~dta~~~~irdtLk~~L~ 179 (208)
T KOG1669|consen 131 GEQFK-VGEEICGAVGSVRFN--EDIISIWNRNASDTADTGRIRDTLKRVLE 179 (208)
T ss_pred hhhhc-ccccccceeEEEecc--chhhhhhcCCCCcchhHHHHHHHHHHHhc
Confidence 99997 469999999999999 89999999999987654 68888888873
No 43
>PTZ00040 translation initiation factor E4; Provisional
Probab=99.97 E-value=5.3e-33 Score=279.93 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=106.4
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCce---------------eeeeccCCCcCCcccccCCCcEEEEEecC
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYC---------------YHLMRFENRPIWEEPYNQKGGTWRIKCSK 525 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~---------------y~lFk~gi~P~WED~~N~~GG~w~i~~~k 525 (645)
++++|++|+|||+ ||++||||++||+|+.+++ |||||+||+||||||+|++||+|++++++
T Consensus 64 ~lk~I~sF~TVEe----FW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lFK~GIkP~WEDp~N~~GG~w~~~~~~ 139 (233)
T PTZ00040 64 YTKPLASFDSVQK----FWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWP 139 (233)
T ss_pred hceEEeEEccHHH----HHHHHhCCCChHHcccccccccccccccccccceeeeecCCCeECcCCCCcCCCCEEEEEecc
Confidence 6899999999999 9999999999999999885 99999999999999999999999999965
Q ss_pred C-----Ccccch----hhhcccccCCCCCCceeEEE----EEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcC
Q psy14235 526 R-----FSICIS----LTHSLGQITPTPKPQSGLSV----YVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHP 587 (645)
Q Consensus 526 ~-----~~~~~W----l~~ige~~~~~~~~I~G~vv----svR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~ 587 (645)
. ..|++| |++|||+|+ .+++|||||+ |+|++ .++|+||++++++.+.. ++.+++++.+-
T Consensus 140 ~~~~~~~~d~~W~~llLa~IGe~~~-~~d~I~Gvvv~~K~s~R~~--~~rIsIW~~~~~d~~~~~~i~~~i~~~l~ 212 (233)
T PTZ00040 140 TDVSPGQIDEYWNNLVLALIGSSLE-HSSLINGIRLVDKLSGRFG--VIRIEIWFTNLGDQSDRNQLMKEIETCMA 212 (233)
T ss_pred ccccccHHHHHHHHHHHHHhcCcCC-CCcccccEEEeeecccCCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 3 358999 799999996 4689999996 67778 79999999999887654 67888888653
No 44
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-29 Score=243.83 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=115.3
Q ss_pred cceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCCC---cccch----hh
Q psy14235 462 KTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRF---SICIS----LT 534 (645)
Q Consensus 462 lk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~~---~~~~W----l~ 534 (645)
++.|++|+|||+ ||.+++||+.++.||..|+|++||+||+|+|||++|.|||+|.+.++++- .+++| ++
T Consensus 62 Lk~I~tf~Tvee----fwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~Ggkws~qlk~~g~d~~dElwl~tlla 137 (217)
T COG5053 62 LKSIITFETVEE----FWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMNGGKWSFQLKGKGCDRLDELWLRTLLA 137 (217)
T ss_pred HhhheeeecHHH----HHHHHhcCCcccccchhhhHHHHHcCCCccccccccCCCCeEEEEcccccchhHHHHHHHHHHH
Confidence 678999999999 99999999999999999999999999999999999999999999998764 46889 78
Q ss_pred hcccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcCCccccccc-ceeeeCc
Q psy14235 535 HSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHPDMRLSKQG-VVYFVGN 602 (645)
Q Consensus 535 ~ige~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~~~~~~~~~-~~y~~~~ 602 (645)
+|||+|++.+.+|||+|++.|+. .++|+||++++.+.+.. +|+.++|..+ +++... +.|++|.
T Consensus 138 ~igeT~Dp~~~ei~GvV~n~rkg--fyKlAiWtr~~~n~dvl~~ig~efk~vl---~ls~~~tle~k~he 202 (217)
T COG5053 138 AIGETLDPTGSEIGGVVGNMRKG--FYKLAIWTRNCNNKDVLGAIGNEFKQVL---ELSDVETLEYKAHE 202 (217)
T ss_pred HHhhccCCCCCeeccEEEEeecC--ceEEEEEecCCCcHHHHHHHHHHHHhcc---cccceeEEEecccc
Confidence 99999999888999999999999 79999999998776543 5666676665 555433 5666663
No 45
>KOG1254|consensus
Probab=99.54 E-value=7.9e-15 Score=158.49 Aligned_cols=185 Identities=21% Similarity=0.217 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhccCCCCCcch-hhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHH
Q psy14235 249 QFTELMRLYLTIHSDHEGGNVSA-HTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 327 (645)
Q Consensus 249 ~~~~~l~~~LiLhADHeg~n~ST-~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i 327 (645)
-..+.+|.++.+.+||+ ..+|- +-+-+.+.+++|+++++++||.. .|++.|||-..+.|.+.+.-++ .-.+
T Consensus 390 Ya~kfie~~~m~~aDhg-p~Vsga~ntI~~~ra~kdl~sslv~gLlt-igdRfggald~aaR~f~~ayd~------GL~~ 461 (600)
T KOG1254|consen 390 YARKFIEICTMLTADHG-PAVSGAGNTIANFRAGKDLFSSLVRGLLT-IGDRFGGALDIAARRFGPAYDK------GLAP 461 (600)
T ss_pred HHHHHHHHHhhccCCCC-ceeEeccCceEEeccHHHHHHHHHHHHhh-hhhhhcchhhHHHHhcChhhhc------cCch
Confidence 34579999999999998 67764 34455578899999999999999 5999998988888877654332 2468
Q ss_pred HHHHHHHHhcCCcccccCCCCC--CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHH
Q psy14235 328 KEFIWNTLKSGQVVPGYGHAVL--RKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSG 405 (645)
Q Consensus 328 ~~~v~~~l~~g~~IpGFGH~Vy--k~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg 405 (645)
.+++.+.++.+..|||.||++- .+.|-|..++++++++.++.-|+++.|.++|++... |.-|+--|||.+.|
T Consensus 462 m~fv~~~~k~~~~V~Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~------k~~nlilnvdg~i~ 535 (600)
T KOG1254|consen 462 MRFVGKMRKVPIEVYGIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTS------KKPNLILNVDGAIA 535 (600)
T ss_pred HHHhhhhhCCCceecCCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeecc------CCCCEEEeccchhH
Confidence 8999999999999999999998 446889999999999999999999999999998733 67799999999999
Q ss_pred HHHHHcCCCCcccc--------------ceeeeecchhhhhHHHHHHHHhCCCCCCC
Q psy14235 406 VLLQYYGLKEMNYY--------------TVLFGVSRALGVLASLIWDRALGLPIERP 448 (645)
Q Consensus 406 ~l~~~lGlp~~~~~--------------t~lFavsR~~GwlAH~ie~~~~~~pI~RP 448 (645)
+++-+|=-. ..+| ..||+++|++|.+.|.+.|..+..|++|-
T Consensus 536 ~~fvd~l~~-~g~ft~~e~~e~i~ig~lng~fvl~rsig~igh~~dqkrlkq~lyrh 591 (600)
T KOG1254|consen 536 VLFVDLLRN-SGMFTKEEADEYINIGALNGLFVLGRSIGFIGHYLDQKRLKQGLYRH 591 (600)
T ss_pred HHHHHHHhc-cCCccHHHhhhheecccccceEEeeeecchhhhhccHhhhhCccccC
Confidence 999887221 1233 48999999999999999999998888874
No 46
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=97.63 E-value=0.0041 Score=63.73 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcC--C-CHHHH--HHHh-cCCCCCChhHHH
Q psy14235 94 GLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--L-PSHVV--TMLN-NFPNHLHPMSQF 167 (645)
Q Consensus 94 Gy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~--l-p~~v~--~~i~-~lP~~~hPM~~l 167 (645)
||||.||+++ .+|+|++|||++|++|+++|++.|...|..... + ...+. ++.. +.| .+|-..+
T Consensus 1 G~~~~dL~~~---------~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~--~~~~~~v 69 (227)
T cd06100 1 GYDLSDLIGK---------ISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGP--EDLQSAV 69 (227)
T ss_pred CCCHHHHHhC---------CCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCC--ccHHHHH
Confidence 8999999987 479999999999999999999999998865432 3 33333 2222 233 5777888
Q ss_pred HHHHHhhc
Q psy14235 168 SAAITALN 175 (645)
Q Consensus 168 ~~avsaL~ 175 (645)
.+++++++
T Consensus 70 aag~~a~G 77 (227)
T cd06100 70 AAGLLGIG 77 (227)
T ss_pred HHHHhccC
Confidence 88888884
No 47
>KOG2617|consensus
Probab=81.76 E-value=0.47 Score=52.22 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=84.0
Q ss_pred eEEecccccCccC------------cceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCC-
Q psy14235 61 EVTVDMMYGGMRG------------IKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV- 127 (645)
Q Consensus 61 ~~t~d~~~~Glrg------------~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~l- 127 (645)
.-+|+.-+++|+| +.++.-.+.-++.++.|+|++.-++|+-+..++. ...|.++=.|..|++
T Consensus 257 ~gnVsAh~~HLvGSaldpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~Eig~~~s~e-----~ikeyiw~~ln~~rvv 331 (458)
T KOG2617|consen 257 GGNVSAHTGHLVGSALDPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIEEIGKDLSKE-----NIKEYIWKTLNSGRVV 331 (458)
T ss_pred cCcHHHHhccccccccchhHHHHHhhcccccccccCchHHHHHHHHHhHHHhccccchh-----hhhHhhHHhhcccccc
Confidence 4567777888888 5555555666665666666666666665443221 111222212222221
Q ss_pred ---------CCHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhc-CCCCCCcChhh
Q psy14235 128 ---------PSEAQVQALSKSWASRAELPSH-VVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYN-DGVHKSKYWEY 196 (645)
Q Consensus 128 ---------Pt~~el~~f~~~L~~~~~lp~~-v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~-~g~~k~~~~~~ 196 (645)
+|..+....++...++ +|++ ..++.. +-.-++|.++....-+...+..+. +|. -...-..+|+.
T Consensus 332 pGyGHavlr~tDPR~~~~~efA~k~--~~~d~l~~l~~--~l~~~~p~vl~e~gk~knp~PNVD-~~SGvll~~yGl~e~ 406 (458)
T KOG2617|consen 332 PGYGHAVLRKTDPRYKVQREFALKH--LPDDPLFLLVS--ALYKIAPGVLTEHGKVKNPYPNVD-AHSGVLLQYYGLPEL 406 (458)
T ss_pred cccccccccCCCchhhHHHHHHHhc--CCCCcchhhhH--HHHHhChHHHHHhcccCCCCCcHH-HHHHHHHHhcCCcHH
Confidence 2333222222222222 2221 111111 112234444444444444433332 221 11233456888
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCC-CCCCHHHHHHHHh
Q psy14235 197 VYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAID-TNKDWSANFTSML 243 (645)
Q Consensus 197 ~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~-~~l~~a~nfl~ml 243 (645)
.+.+.+-.+++++-+++-++... .-|.|+.-|. -..++-.+|..+.
T Consensus 407 ~fyTVLFgVsRa~Gvlsqliw~r-alg~pieRPks~~t~~~~~~~~~~ 453 (458)
T KOG2617|consen 407 FFYTVLFGVSRALGVLSQLIWDR-ALGLPIERPKSVSTDWLHRFTNMV 453 (458)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH-HhCCcccCccccchHHHHHHHHHh
Confidence 88888888898888887754432 3566665453 3667777777665
No 48
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=72.59 E-value=12 Score=38.09 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=43.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHHH--HHhcCCCCCChhHHHHHHHHhhc
Q psy14235 115 PEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVVT--MLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 115 fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~~--~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
|-+.+|++++|+.|+++|.+.|...|--+. .++..+.. +..+ ..++|-.-+.++++++.
T Consensus 2 ~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St~aar~~aS--t~ad~~~av~Agl~al~ 64 (213)
T cd06099 2 YAENFLYMLGGEEPDPEFARAMDLALILHADHEGNASTFTARVVGS--TGSDPYSAIAAAIGALK 64 (213)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhhHHHHHHhc--cCCCHHHHHHHHHHHcC
Confidence 557899999999999999999999875443 24554433 3343 34578888888888883
No 49
>PRK14037 citrate synthase; Provisional
Probab=57.80 E-value=30 Score=38.45 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++|+.|+++|.+.|...|--+. .++.......-.-...++|-..+.+++++|.
T Consensus 150 ~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aSt~ad~ysav~agi~al~ 214 (377)
T PRK14037 150 DSFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPASTTAALVAASTLSDMYSCITAALAALK 214 (377)
T ss_pred CCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhccCCCHHHHHHHHHHhcc
Confidence 46778899999999999999999998875443 3566655432222344688899999999883
No 50
>PRK14035 citrate synthase; Provisional
Probab=48.60 E-value=40 Score=37.44 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=44.5
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCC--HHHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp--~~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++|+.|+++|.+.|...|--+. .+. .....++.+ ..++|...+.+++++|.
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aS--t~ad~~sav~Agi~al~ 214 (371)
T PRK14035 150 LSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNASTFTARCAVS--SLSDMYSGVVAAVGSLK 214 (371)
T ss_pred CCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 46889999999999999999999998875443 233 233334433 34578888999988874
No 51
>PRK12349 citrate synthase 3; Provisional
Probab=47.95 E-value=51 Score=36.51 Aligned_cols=61 Identities=16% Similarity=0.320 Sum_probs=45.7
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++|+.|+++|.+.|...|.-.. .++.... .++.+ ..++|-..+.+++++|.
T Consensus 153 l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~lnaStfa~Rv~aS--t~ad~~~av~agl~al~ 217 (369)
T PRK12349 153 LSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEMPNSTFTARVIAS--TQSDLYGALTGAVASLK 217 (369)
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCccHHHHHHHHHHc--cCccHHHHHHHHHHhcc
Confidence 36778899999999999999999999875443 3555544 34444 34578888889998883
No 52
>PRK14034 citrate synthase; Provisional
Probab=47.85 E-value=42 Score=37.23 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCC--HHHHHHHhcCCCCCChhHHHHHHHHhhcc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELP--SHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp--~~v~~~i~~lP~~~hPM~~l~~avsaL~~ 176 (645)
-+|-+.+|++++|+.|+++|.+.|...|--+. .+. .....++.+ ..++|...+.+++++|..
T Consensus 150 ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aS--t~~d~ysav~agi~al~G 215 (372)
T PRK14034 150 LSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVA--TLSDVYSGITAAIGALKG 215 (372)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhc--cCCcHHHHHHHHhcccCC
Confidence 46889999999999999999999998875443 233 333344443 345788888888888753
No 53
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=45.11 E-value=25 Score=36.77 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=39.8
Q ss_pred cCCCcEEEEEecCCCcccch----hhhcccccCCCCCCceeEEEEE----EecccccEEEEeccCCCCCCcc-hhhHHHH
Q psy14235 513 NQKGGTWRIKCSKRFSICIS----LTHSLGQITPTPKPQSGLSVYV----VLTLFVMMLRAWQIAPTPKPQS-GLFVTRK 583 (645)
Q Consensus 513 N~~GG~w~i~~~k~~~~~~W----l~~ige~~~~~~~~I~G~vvsv----R~~~~~~~isiW~~~~~~~~~~-~i~~~~k 583 (645)
+.--|||.|-+++...|.+| -+++-+++. +++=||. ....-...|.|.|.|-.|.+.+ +++.+++
T Consensus 147 ~v~sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg------~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~RVl~~Lr 220 (243)
T PF08939_consen 147 GVTSGKWMLFPPPDRVDEIWSKVAKATADGELG------ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVMRVLRRLR 220 (243)
T ss_dssp T---EEEEEEE-TTHHHHHHHHHHHHHHTTSS-------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHHHHHHHHH
T ss_pred CcccceeEEEcCHHHHHHHHHHHHHHHHcCCce------eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999 233433331 4555665 1111134699999999887664 6888887
Q ss_pred hh
Q psy14235 584 SL 585 (645)
Q Consensus 584 ~~ 585 (645)
++
T Consensus 221 ~~ 222 (243)
T PF08939_consen 221 EL 222 (243)
T ss_dssp HT
T ss_pred Hc
Confidence 77
No 54
>PRK14036 citrate synthase; Provisional
Probab=44.59 E-value=53 Score=36.56 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=44.2
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++|+.|++.+.+.|...|--+. .+..... .++.+ ..++|...+.+++++|.
T Consensus 152 l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aS--t~ad~ys~v~agi~aL~ 216 (377)
T PRK14036 152 LDYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINASTFSARVTAS--TLTDPYAVIASAVGTLA 216 (377)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHHcc
Confidence 46789999999999999999999999875443 2333333 33333 34578888888888874
No 55
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=44.50 E-value=36 Score=37.79 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=44.4
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCH--HHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++|+.|++++.+.|...|--+. .+.. ....++.+ ..++|...+.+++++|.
T Consensus 151 ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaS--t~ad~~s~~~aai~al~ 215 (373)
T cd06112 151 LDYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNASTFSALVTGS--TLADPYAVISSAIGTLS 215 (373)
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 46789999999999999999999998875443 2333 33344444 23578888888888884
No 56
>PRK14033 citrate synthase; Provisional
Probab=37.96 E-value=90 Score=34.70 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=43.9
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++|+.|++.+.+.|...|--+. .+... ...++.+ ..++|-..+.+++++|.
T Consensus 157 ~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aS--t~adl~~av~agl~al~ 221 (375)
T PRK14033 157 LGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNASTFTARVITS--TLSDIYSAVTGAIGALK 221 (375)
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhc--cCCCHHHHHHHHHhhcc
Confidence 46788899999999999999999998774433 23333 3345554 34578888888888884
No 57
>PRK12351 methylcitrate synthase; Provisional
Probab=36.29 E-value=1e+02 Score=34.29 Aligned_cols=60 Identities=28% Similarity=0.305 Sum_probs=44.0
Q ss_pred CHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 114 ~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
++-+.+|++++|+.|++++.+.|...|--+. .+... ...+..+- .++|-..+.++|++|.
T Consensus 158 s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaSt--~ad~~sav~agi~aL~ 221 (378)
T PRK12351 158 SIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHEFNASTFTARVIAGT--GSDMYSAITGAIGALR 221 (378)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhcc--CCCHHHHHHHHHHhcc
Confidence 6778889999999999999999999875443 23333 33445443 4578888888888883
No 58
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=35.39 E-value=28 Score=33.54 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.0
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14235 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (645)
Q Consensus 90 i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LL 122 (645)
-.|||++++||.+. ..||++=||
T Consensus 15 f~yRG~~l~~L~~m----------~~~e~~~L~ 37 (143)
T PTZ00096 15 FTYRGVELEKLLAL----------PEEELVELF 37 (143)
T ss_pred eeeecCCHHHHHcC----------CHHHHHHHc
Confidence 38999999999985 568887666
No 59
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=35.15 E-value=1.1e+02 Score=33.90 Aligned_cols=61 Identities=23% Similarity=0.202 Sum_probs=43.5
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCH--HHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++|+.|++++.+.|...|--+. .+.. ....++.+- .++|-..+.+++++|.
T Consensus 147 ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aSt--~ad~~~av~agl~aL~ 211 (362)
T cd06111 147 LGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNASTFTARVITST--LSDIYSAITGAIGALK 211 (362)
T ss_pred cCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHcc--CCCHHHHHHHHHhhcc
Confidence 46778899999999999999999998764332 2332 333455553 3577788888888874
No 60
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=34.01 E-value=42 Score=34.28 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhc
Q psy14235 115 PEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNN 156 (645)
Q Consensus 115 fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~ 156 (645)
|--=++|=|+|.+||.+|+.+|.+ ..=|+.-.++|+.
T Consensus 27 ~lRRv~LDL~G~~PT~eEv~~Fl~-----d~~~~kr~~lVd~ 63 (208)
T PF07583_consen 27 FLRRVYLDLTGLPPTPEEVRAFLA-----DPSPDKREKLVDR 63 (208)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHh-----CCChhHHHHHHHH
Confidence 333458889999999999999985 2334444445544
No 61
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=33.44 E-value=1.1e+02 Score=33.92 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=44.5
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCH--HHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|.+++|+.|++++.+.|...|--+. .+.. ....++.+ ..++|-..+.+++++|.
T Consensus 145 ~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~aS--t~ad~~sav~agi~al~ 209 (363)
T cd06108 145 DSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHEFNASTFAARVTAS--TLSDFYSAITGAIGTLR 209 (363)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 46778899999999999999999998875443 2333 33344444 44678888888888883
No 62
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=31.90 E-value=1.2e+02 Score=34.22 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=44.8
Q ss_pred CCHHHHHHHHhhC-CCCCHHHHHHHHHHHH---hhcCCCH--HHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTG-DVPSEAQVQALSKSWA---SRAELPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G-~lPt~~el~~f~~~L~---~~~~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++| +.|+++|.+.|...|- +|..++. ....+..+- .++|-..+.+++++|.
T Consensus 174 ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt--~ad~~~avaagi~al~ 240 (406)
T cd06113 174 LSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSS--GTDTYSAIAAAIGSLK 240 (406)
T ss_pred CCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHcc--CCCHHHHHHHHHHHcc
Confidence 4677899999999 5999999999998875 3332333 333455553 3588899999999984
No 63
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=31.70 E-value=1.6e+02 Score=32.65 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=44.8
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCH--HHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
.+|.+.+|++++|+.|++++.+.|...|.-+. .+.. ....++.+- .++|-..+.+++++|.
T Consensus 147 ~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aSt--~adl~~av~agl~al~ 211 (368)
T TIGR01800 147 DSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNASTFAARVAAST--LSDMYSAITAAIGALK 211 (368)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhcc--CCCHHHHHHHHHhhcC
Confidence 57888999999999999999999998875443 2333 333455553 4678888888888884
No 64
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=31.42 E-value=37 Score=32.46 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=18.9
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14235 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (645)
Q Consensus 90 i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LL 122 (645)
-.|||++++||.+. ..||++=||
T Consensus 7 f~yrG~~l~~L~~m----------~~~~~~~l~ 29 (134)
T PRK04038 7 FTYRGYTLEELQEM----------SLEEFAELL 29 (134)
T ss_pred eeecccCHHHHHcC----------CHHHHHHHc
Confidence 38999999999985 568877666
No 65
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=29.79 E-value=1.5e+02 Score=32.87 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHH--HHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHV--VTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v--~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-|-++.+++|+.|++++.+.|...|--+. .+.... ..+..+- .++|-..+.+++++|.
T Consensus 148 ~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~n~ST~aarv~aSt--~ad~~sav~agi~aL~ 212 (366)
T cd06117 148 DSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHEFNASTFTARVIAGT--GSDMYSAITGAIGALR 212 (366)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHHcc--CCcHHHHHHHHHHhcc
Confidence 35668888889999999999999999875443 243333 3455553 3578888888888884
No 66
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=29.36 E-value=1.5e+02 Score=32.73 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=45.1
Q ss_pred CHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCH--HHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 114 ~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
+|-+.++.+++|+.|++++.+.|...|--+. .++. ....++.+-. ++|-..+.+++++|.
T Consensus 148 ~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~n~Stfa~R~~aSt~--ad~~~av~agl~al~ 211 (358)
T cd06118 148 SYAENFLYMLFGEEPDPEEAKAMDLALILHADHEGNASTFTARVVASTL--SDMYSAIAAAIAALK 211 (358)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCChHHHHHHHHHccC--CCHHHHHHHHHHHcc
Confidence 5678888889999999999999998875443 2454 3445666544 688899999999884
No 67
>PRK14032 citrate synthase; Provisional
Probab=28.65 E-value=1.5e+02 Score=33.82 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=44.9
Q ss_pred CCHHHHHHHHhhCC-CCCHHHHHHHHHHHHh---hcCCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGD-VPSEAQVQALSKSWAS---RAELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~-lPt~~el~~f~~~L~~---~~~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.++.+++|+ .|++.|.+.|...|-- |..++.... .++.+- .++|-..+.+++++|.
T Consensus 204 ls~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aSt--~ad~ysavaagi~aL~ 270 (447)
T PRK14032 204 LSTAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSSS--GTDTYSAIAAAIGSLK 270 (447)
T ss_pred CCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHcc--CCcHHHHHHHHHHhcc
Confidence 36778888899999 9999999999988753 332444333 455553 4588899999999983
No 68
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=28.09 E-value=44 Score=31.95 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=18.3
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14235 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (645)
Q Consensus 90 i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LL 122 (645)
-.|||++++||.+. ..||++=||
T Consensus 5 f~yrG~~l~~L~~m----------~~~e~~~l~ 27 (135)
T TIGR01025 5 FRYRGYTLEELQDM----------SLEELAKLL 27 (135)
T ss_pred EeecccCHHHHHcC----------CHHHHHHHc
Confidence 47999999999985 457777665
No 69
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=27.67 E-value=1.6e+02 Score=32.43 Aligned_cols=61 Identities=26% Similarity=0.293 Sum_probs=44.7
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCC--HHHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp--~~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.+|++++|+.|++++.+.|...|.-+. .+. ....+++.+-. ++|-..+.+++++|.
T Consensus 147 ~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n~Stfa~Rv~aSt~--ad~~~av~agl~al~ 211 (356)
T cd06110 147 LSHAANFLYMLTGEKPSEEAARAFDVALILHADHELNASTFAARVVASTL--SDMYSAVTAAIGALK 211 (356)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchhHHHHHHHHhcC--CCHHHHHHHHHhhcC
Confidence 46778888889999999999999998875443 233 33445666644 578888888888883
No 70
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=27.26 E-value=2.5e+02 Score=26.00 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=28.6
Q ss_pred eecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCC-CCCHHHHHHHHHHHH
Q psy14235 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSWA 141 (645)
Q Consensus 91 ~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~-lPt~~el~~f~~~L~ 141 (645)
.-||++.+||++.+. -+. +...-+..|+ -|+.+-+..+.+.|.
T Consensus 15 ~~~Glsq~eLA~~~G-------is~-~~is~iE~g~~~ps~~~l~kIa~aL~ 58 (120)
T PRK13890 15 DERHMTKKELSERSG-------VSI-SFLSDLTTGKANPSLKVMEAIADALE 58 (120)
T ss_pred HHcCCCHHHHHHHHC-------cCH-HHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 468999999998852 132 4444455665 688877777776654
No 71
>PF03708 Avian_gp85: Avian retrovirus envelope protein, gp85 ; InterPro: IPR005166 A family of a vain specific viral glycoproteins that forms a receptor-binding Gp95 polypeptide that is linked through disulphide to a membrane-spanning gp37 spike. Gp95 confers a high degree of subgroup specificity for interaction with distinct cell receptors [].; GO: 0019031 viral envelope
Probab=24.96 E-value=1.3e+02 Score=30.88 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=54.4
Q ss_pred hhhhHHHHHHHHhCCCCCCCCcccchhhHhhhcccee-----eeecccccccc----cccccccCCcCCCCCCCCceeee
Q psy14235 429 LGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQI-----ISLTMIEYYLC----AFYIKYGLPEGAFHLSTRYCYHL 499 (645)
Q Consensus 429 ~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~vnlk~i-----~~f~tVE~~~~----~Fw~~yn~i~~ps~l~~~~~y~l 499 (645)
.||.-.-++.-.+..|++|| |.........--.| .+|..=.+|=+ +||.+||.-+.-. .|-.
T Consensus 52 ~gw~R~~~t~~~l~~p~inP---f~n~~~n~~~Pftvvtadr~nlf~gs~YCG~ygyrfw~~yncs~~~~------~yrc 122 (256)
T PF03708_consen 52 LGWSRDFITRWLLRDPLINP---FFNSSSNSTEPFTVVTADRHNLFMGSEYCGAYGYRFWEIYNCSQTRY------QYRC 122 (256)
T ss_pred hhhhHHHHHHhhccCccccc---cccccccccCCeEEeeccccceeecccccccccccceeeeccccccc------eeec
Confidence 46766656655666688888 22222222221122 22222223322 5999999766322 2321
Q ss_pred eccC-CCcCCcccccCCCcEEEEEecCCCc-ccch--hhhcccccCCCCCCceeEEEEEEec
Q psy14235 500 MRFE-NRPIWEEPYNQKGGTWRIKCSKRFS-ICIS--LTHSLGQITPTPKPQSGLSVYVVLT 557 (645)
Q Consensus 500 Fk~g-i~P~WED~~N~~GG~w~i~~~k~~~-~~~W--l~~ige~~~~~~~~I~G~vvsvR~~ 557 (645)
=+-. -.|. |-..-.+||+|+=+.+.-.. +-+- .-|-+.++... .--||=...+++.
T Consensus 123 G~~~~~~~p-e~~C~~~gG~Wvn~s~~ines~pfs~t~~Ct~~~lgN~-sGCcG~~~tilp~ 182 (256)
T PF03708_consen 123 GDVSTPGLP-ETWCTSKGGKWVNQSKEINESEPFSFTTNCTASNLGNV-SGCCGKATTILPP 182 (256)
T ss_pred cccCCCCCc-ccccccCCcEeeccccccccccCccccccccCccCCCc-ccccCCcccccCc
Confidence 1111 1111 33445899999766543211 1111 23444444321 2245555555554
No 72
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=24.79 E-value=1.9e+02 Score=31.86 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=44.0
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CC--CHHHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--EL--PSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~l--p~~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++.+++|+.|++++.+.|...|--+. .+ +.....++.+- .++|-..+.+++++|.
T Consensus 136 ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~ST~aaRv~aSt--~ad~~savaagi~al~ 200 (349)
T cd06109 136 LSHAADYLRMLTGEPPSEAHVRALDAYLVTVADHGMNASTFTARVIAST--EADLTSAVLGAIGALK 200 (349)
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccCCCchhhHHHHHhcc--CCcHHHHHHHHHHhcc
Confidence 36777888888999999999999999875433 22 23333455543 4578888999999884
No 73
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=23.06 E-value=1.6e+02 Score=30.50 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=42.5
Q ss_pred CCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCC-CCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCC
Q psy14235 95 LSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSWASRAELPSHVVTMLNNFP 158 (645)
Q Consensus 95 y~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~-lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP 158 (645)
||-+||.+.+ ..+|.+.|==.+|+ +|+.++.++|-++|.....+.+.+.+-+.-.|
T Consensus 24 ~ty~el~~~~--------g~p~~~l~RYv~g~~~P~~~~a~~~~~~l~~~~~~~~~l~~ri~~~~ 80 (238)
T PRK08558 24 YTYEELSSIT--------GLPESVLNRYVNGHVLPSVERAREIVEKLGPYYNLEEEVKARIKVDD 80 (238)
T ss_pred cCHHHHHHHH--------CCCHHHHHHHHcCCcCCCHHHHHHHHHHHHHhhhhHHHHHhhcccCC
Confidence 5888888775 46788998888887 79999999999999887666555554444444
No 74
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=22.54 E-value=1.1e+03 Score=26.66 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=48.0
Q ss_pred hhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCC
Q psy14235 273 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKT 352 (645)
Q Consensus 273 aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~ 352 (645)
|+|+++-. .|+-++-..|.-|..--+|--|-.+.++-+.++ +++..-..+.++++++-..|| |-.+...
T Consensus 231 TarlA~~~-gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~--------dPd~tm~Aiadmm~~ki~MPa--~~m~dg~ 299 (390)
T PLN00179 231 TARLAKEH-GDAKLAKICGTIAADEKRHETAYTRIVEKLFEI--------DPDGAVLAFADMMRKKITMPA--HLMYDGR 299 (390)
T ss_pred HHHHHHhc-CChHHHHHHHHHhccHHHHHHHHHHHHHHHHhh--------CccHHHHHHHHHHHhcCCCCc--ccCCCCC
Confidence 44544443 366666556655556677754444433333222 356666667788888888885 7788777
Q ss_pred Ccc-HHHHHHHHHhh
Q psy14235 353 DPR-YTCQREFAQKH 366 (645)
Q Consensus 353 DPR-a~~L~~~a~~~ 366 (645)
||. ++..-..+++.
T Consensus 300 d~~lF~~fsavaqr~ 314 (390)
T PLN00179 300 DDNLFDHFSAVAQRL 314 (390)
T ss_pred cchHHHHHHHHHHHh
Confidence 875 33344444444
No 75
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=21.97 E-value=3.1e+02 Score=28.95 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=52.2
Q ss_pred CCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHH
Q psy14235 94 GLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSA 169 (645)
Q Consensus 94 Gy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~ 169 (645)
-.+.+|.+-.+= .|.-|++-+.++.+++|+.|+++|.+.|...|--+. .+..... .+..+ ..++|-..+.+
T Consensus 36 ~~~f~ev~~LL~---~G~lP~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg~naST~aaRv~aS--t~ad~~~av~a 110 (265)
T cd06101 36 NSSFEEVAYLLL---TGELPSYAENFLYMLGGEEPDPEFAKAMDLALILHADHEGNASTFTARVVGS--TLSDPYSAIAA 110 (265)
T ss_pred cCCHHHHHHHHH---cCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCchHHHHHHHHHc--cCCcHHHHHHH
Confidence 367777766542 234457777888888999999999999998775443 2333233 34444 34578888888
Q ss_pred HHHhhc
Q psy14235 170 AITALN 175 (645)
Q Consensus 170 avsaL~ 175 (645)
++++|.
T Consensus 111 gl~al~ 116 (265)
T cd06101 111 AIAALK 116 (265)
T ss_pred HHHhCC
Confidence 888884
No 76
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=21.63 E-value=9e+02 Score=24.92 Aligned_cols=156 Identities=15% Similarity=0.216 Sum_probs=90.5
Q ss_pred CChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHH
Q psy14235 161 LHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFT 240 (645)
Q Consensus 161 ~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl 240 (645)
.+|+..|.+.|.+-++-|. .+.....+|.++.|+.-++.. .+.+=-+++.
T Consensus 27 ~~pf~lLva~iLSaqttD~----------------~vn~at~~Lf~~~~t~e~l~~--------------a~~~~l~~~I 76 (211)
T COG0177 27 KDPFELLVAVILSAQTTDE----------------VVNKATPALFKRYPTPEDLLN--------------ADEEELEELI 76 (211)
T ss_pred CCcHHHHHHHHHhccCchH----------------HHHHHHHHHHHHcCCHHHHHc--------------CCHHHHHHHH
Confidence 5899999888877665432 233445567777776555541 1222345666
Q ss_pred HHhCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccC-----CChHHHHHHhhhccccccccChHHHHHHHHHHHH
Q psy14235 241 SMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSAL-----SDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQ 315 (645)
Q Consensus 241 ~ml~~~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~-----ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~ 315 (645)
+..|.-......+..++=+|.-||+|.-|.+.-. +++=.| +|...+.+=|.-++.=.-| |.|.-
T Consensus 77 ~~iGlyr~KAk~I~~~~~~l~e~~~g~vP~~~~e-L~~LPGVGrKTAnvVL~~a~g~p~i~VDTH------V~Rvs---- 145 (211)
T COG0177 77 KSIGLYRNKAKNIKELARILLEKFGGEVPDTREE-LLSLPGVGRKTANVVLSFAFGIPAIAVDTH------VHRVS---- 145 (211)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHcCCCCCchHHH-HHhCCCcchHHHHHHHHhhcCCCcccccch------HHHHH----
Confidence 6666655666778888888889998655555532 222222 4555555555444433334 22221
Q ss_pred HHhC--CCcchhHHHHHHHHHHhcC------CcccccCCCCCCCCCccHH
Q psy14235 316 QQVG--DNVSEEKLKEFIWNTLKSG------QVVPGYGHAVLRKTDPRYT 357 (645)
Q Consensus 316 ~~ig--~~~s~~~i~~~v~~~l~~g------~~IpGFGH~Vyk~~DPRa~ 357 (645)
+.+| ...+++.+++.+.+.+-++ -.+-+||-.+=+...||-.
T Consensus 146 ~R~gl~~~~~p~~ve~~L~~~iP~~~~~~~h~~lI~~GR~iC~ar~P~C~ 195 (211)
T COG0177 146 NRLGLVPGKTPEEVEEALMKLIPKELWTDLHHWLILHGRYICKARKPRCE 195 (211)
T ss_pred HHhCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHhhhhhccCCCCCcC
Confidence 2233 2235677777776655322 3456788888888888754
No 77
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=21.03 E-value=2.8e+02 Score=30.47 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=41.5
Q ss_pred CCHHHHHHHHh--hCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLV--TGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl--~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
.++-|.++.+| +|+-|++++.+.|...|--+. .+..... ++..+ ..++|-..+.+++++|.
T Consensus 147 ~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~aS--t~~~~~~av~agl~al~ 213 (356)
T PF00285_consen 147 LSYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPSTFAARVAAS--TGADLYSAVAAGLAALS 213 (356)
T ss_dssp SSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHHT--TT--HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhhc--cCcchhHHHHhhhhhcc
Confidence 45667777777 899999999999999876443 4544443 44444 45688899999999985
No 78
>KOG0292|consensus
Probab=20.92 E-value=1.4e+02 Score=36.72 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=73.8
Q ss_pred EEEEecCCCcccch---hhhcccccCCCCCCceeEEEEEEecc-----cccEEEEeccCCCCCCcchhhHHHHhhcCCcc
Q psy14235 519 WRIKCSKRFSICIS---LTHSLGQITPTPKPQSGLSVYVVLTL-----FVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMR 590 (645)
Q Consensus 519 w~i~~~k~~~~~~W---l~~ige~~~~~~~~I~G~vvsvR~~~-----~~~~isiW~~~~~~~~~~~i~~~~k~~l~~~~ 590 (645)
|++.--.+-.-++| |+..-+.|+++.+.|-||-+-.+... ...+|.|||=.... -+..|+.|++
T Consensus 23 wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--------clftL~GHlD 94 (1202)
T KOG0292|consen 23 WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--------CLFTLLGHLD 94 (1202)
T ss_pred EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce--------ehhhhccccc
Confidence 78877777778899 88888999988889999987643321 15899999843211 2455566644
Q ss_pred cccccceeeeCc-------eeEEEEEEeecccchhhhhhhccccccccccccc
Q psy14235 591 LSKQGVVYFVGN-------NMIFTVQVRRHQSQICISHSLLFTPHAVKCCTFA 636 (645)
Q Consensus 591 ~~~~~~~y~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (645)
..+.++|||. +-.=||.+-.-||.-||. .|-=--|-|-|..|-
T Consensus 95 --YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia-vltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 95 --YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA-VLTGHNHYVMCAQFH 144 (1202)
T ss_pred --eeEEeeccCCCceEEEccCCCeEEEEeccCCceEE-EEecCceEEEeeccC
Confidence 3557888884 334467777888888875 233345778887764
Done!