Query psy14235
Match_columns 645
No_of_seqs 392 out of 1811
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:52:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1csh_A Citrate synthase; lyase 100.0 1E-114 4E-119 945.9 39.7 432 30-461 2-433 (435)
2 3msu_A Citrate synthase; helix 100.0 6E-100 2E-104 826.1 30.7 378 42-457 32-424 (427)
3 2h12_A Citrate synthase; acido 100.0 6.2E-99 2E-103 822.1 28.8 382 43-458 31-428 (436)
4 3l96_A Citrate synthase; quate 100.0 6E-100 2E-104 826.7 18.2 381 43-458 24-418 (426)
5 3hwk_A Methylcitrate synthase; 100.0 4.5E-98 2E-102 808.6 32.0 375 46-458 25-408 (414)
6 2ibp_A Citrate synthase; disul 100.0 6.5E-97 2E-101 801.1 29.6 379 53-458 9-401 (409)
7 2p2w_A Citrate synthase; trans 100.0 4.2E-96 1E-100 786.0 31.4 354 66-458 1-355 (367)
8 3tqg_A 2-methylcitrate synthas 100.0 2.7E-96 9E-101 787.9 27.7 357 60-458 3-366 (375)
9 3o8j_A 2-methylcitrate synthas 100.0 4.9E-96 2E-100 791.3 28.9 370 54-458 17-395 (404)
10 2c6x_A Citrate synthase 1; tri 100.0 6.8E-96 2E-100 782.9 29.0 356 68-457 2-360 (363)
11 1o7x_A Citrate synthase; lyase 100.0 5.2E-95 1.8E-99 779.9 30.4 356 69-458 6-369 (377)
12 1iom_A Citrate synthase; open 100.0 2.7E-94 9.1E-99 774.4 34.9 358 69-458 5-368 (377)
13 1vgm_A 378AA long hypothetical 100.0 8.6E-95 2.9E-99 778.5 30.8 360 62-458 3-370 (378)
14 1aj8_A Citrate synthase; hyper 100.0 2.5E-94 8.5E-99 773.2 32.7 358 68-458 2-362 (371)
15 1a59_A Citrate synthase; cold- 100.0 3.3E-94 1.1E-98 774.8 32.6 361 67-457 5-374 (378)
16 2ifc_A Citrate synthase; oxalo 100.0 2.2E-94 7.4E-99 777.0 30.3 358 67-458 7-376 (385)
17 1vgp_A 373AA long hypothetical 100.0 3.8E-94 1.3E-98 772.7 27.7 354 68-458 4-365 (373)
18 2idr_A Eukaryotic translation 100.0 6.9E-39 2.4E-43 311.9 7.1 130 461-601 27-161 (177)
19 1l8b_A Eukaryotic translation 100.0 1.1E-38 3.9E-43 313.6 6.5 134 461-602 32-174 (190)
20 3m94_A Translation initiation 100.0 2.4E-38 8.1E-43 310.6 6.7 135 461-603 25-168 (189)
21 2jgb_A Eukaryotic translation 100.0 4.7E-38 1.6E-42 310.3 8.2 120 461-587 42-166 (195)
22 1ipb_A Eukaryotic translation 100.0 3.1E-38 1E-42 316.1 4.8 135 461-603 59-202 (217)
23 1ap8_A Translation initiation 100.0 1.9E-37 6.6E-42 309.3 8.9 132 461-601 61-199 (213)
24 3hxi_A Eukaryotic translation 100.0 8.4E-38 2.9E-42 306.8 2.7 121 461-587 32-160 (189)
25 4axg_A Eukaryotic translation 100.0 5.5E-35 1.9E-39 297.9 8.4 133 461-602 92-232 (248)
26 1ztp_A Basophilic leukemia exp 98.2 2.7E-07 9.3E-12 93.3 1.8 68 511-585 121-195 (251)
27 3u5c_P 40S ribosomal protein S 35.5 16 0.00053 33.9 2.0 23 90-122 15-37 (142)
28 3tqg_A 2-methylcitrate synthas 33.4 89 0.003 33.3 7.7 61 113-175 153-217 (375)
29 3j20_T 30S ribosomal protein S 33.2 15 0.00051 33.6 1.5 23 90-122 6-28 (132)
30 4ay7_A Methylcobalamin\: coenz 30.1 49 0.0017 34.2 5.0 44 323-366 302-346 (348)
31 2xzm_S RPS15E; ribosome, trans 29.6 19 0.00065 33.4 1.5 32 90-122 11-42 (144)
32 1a59_A Citrate synthase; cold- 27.9 1.2E+02 0.0042 32.1 7.7 60 113-174 153-216 (378)
33 1aj8_A Citrate synthase; hyper 27.7 1.3E+02 0.0043 32.0 7.7 61 113-175 150-214 (371)
34 1iom_A Citrate synthase; open 27.3 1.3E+02 0.0044 32.0 7.7 61 113-175 151-215 (377)
35 2ifc_A Citrate synthase; oxalo 26.8 1.5E+02 0.0051 31.5 8.1 61 113-175 155-219 (385)
36 1vgp_A 373AA long hypothetical 26.1 1.4E+02 0.0047 31.7 7.7 61 113-175 147-211 (373)
37 2ibp_A Citrate synthase; disul 26.1 1.4E+02 0.0047 32.1 7.8 61 113-175 181-245 (409)
38 1vgm_A 378AA long hypothetical 25.2 1.7E+02 0.0058 31.1 8.2 61 113-175 151-215 (378)
39 3o8j_A 2-methylcitrate synthas 25.1 1.6E+02 0.0055 31.6 8.0 61 113-175 182-246 (404)
40 3hwk_A Methylcitrate synthase; 22.5 1.8E+02 0.006 31.4 7.7 61 113-175 195-259 (414)
41 3iz6_R 40S ribosomal protein S 22.1 19 0.00064 33.8 0.0 23 90-122 24-46 (154)
No 1
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=100.00 E-value=1.3e-114 Score=945.93 Aligned_cols=432 Identities=75% Similarity=1.264 Sum_probs=412.1
Q ss_pred hhHHHHHHhhCcccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCeeecCCCHHHHHhhCCCCCC
Q psy14235 30 TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKG 109 (645)
Q Consensus 30 ~~lk~~~~~~ip~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi~YRGy~I~eLa~~~p~~~~ 109 (645)
++||++|+++||.+++.+++||+.||+++||++|+|++++||+|+++..|+||+|||++||+||||+|+||++++|++++
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~ 81 (435)
T 1csh_A 2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG 81 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCC
Q psy14235 110 GEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH 189 (645)
Q Consensus 110 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~ 189 (645)
+.+++||||+||||+|+|||++|+++|+++|.+++.+|+.+.++|+++|+++|||++|+++|++|+++++|+.+|+++.+
T Consensus 82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~ 161 (435)
T 1csh_A 82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN 161 (435)
T ss_dssp CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999888987776
Q ss_pred CCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCc
Q psy14235 190 KSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNV 269 (645)
Q Consensus 190 k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~ 269 (645)
+.++|++.++++++|||++|+|+|++||+.+.+|.++++|++++||++||++||+++++.++++||++|||||||||+|+
T Consensus 162 ~~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~ls~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~ 241 (435)
T 1csh_A 162 RTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNV 241 (435)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCch
Confidence 66789999999999999999999999998766565677899999999999999998899999999999999999976999
Q ss_pred chhhhhhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCC
Q psy14235 270 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVL 349 (645)
Q Consensus 270 ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vy 349 (645)
||||+|++|||++|+|+|++|||++|+||+|||||++|++||.++.+++|++++++++++||++.+++|++|||||||||
T Consensus 242 STftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVy 321 (435)
T 1csh_A 242 SAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVL 321 (435)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCcccc
Confidence 99999999999999999999999999999999999999999999988898766789999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchh
Q psy14235 350 RKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRAL 429 (645)
Q Consensus 350 k~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~ 429 (645)
|++|||+++|+++++++.+++++++++.+||++++++|.++++.|+++||||||+|+++++||||+.++||+||++||++
T Consensus 322 k~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~l~pNVDf~sg~i~~~lGipp~~~ft~lFaisR~~ 401 (435)
T 1csh_A 322 RKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRAL 401 (435)
T ss_dssp CSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcCCChhhcccchhhhhhhH
Confidence 99999999999999999888999999999999999988889999999999999999999999996569999999999999
Q ss_pred hhhHHHHHHHHhCCCCCCCCcccchhhHhhhc
Q psy14235 430 GVLASLIWDRALGLPIERPKSLSTNDLVKQYS 461 (645)
Q Consensus 430 GwlAH~ie~~~~~~pI~RPrs~y~~~~~~~vn 461 (645)
||+||++||+..+.||+||+|+||+++++.++
T Consensus 402 Gw~AH~~Eq~~~~~~I~RP~~~y~~~~~~~~~ 433 (435)
T 1csh_A 402 GVLAQLIWSRALGFPLERPKSMSTAGLEKLSA 433 (435)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCcCcHHHhhHHHHHHhc
Confidence 99999999999998899999999999988764
No 2
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=100.00 E-value=5.8e-100 Score=826.14 Aligned_cols=378 Identities=27% Similarity=0.412 Sum_probs=340.0
Q ss_pred ccchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHH
Q psy14235 42 SEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFW 120 (645)
Q Consensus 42 ~~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~ 120 (645)
..++.+.|++++++ + |.+|+|+ |+.|+.+..|+||+|||++| ++||||+|+||+++ ++||||+|
T Consensus 32 ~~g~~~~d~~~l~~-~--G~~t~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~---------~~feevay 96 (427)
T 3msu_A 32 SLGNDCIDVSSLVK-H--GIFTYDP---GFMSTAACESKITYIDGGKGVLLHRGYPIEEWTQK---------SNYRTLCY 96 (427)
T ss_dssp SSSCEEEECGGGGG-G--TEEEECT---TCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHH
T ss_pred CCCCceeeeHhhhh-C--CCEeeCC---CcCCceEEEEEeeEEeCCCCEEEECCeEHHHHhcc---------CCHHHHHH
Confidence 34567789999988 5 9999999 56667888999999999999 59999999999998 58999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHH
Q psy14235 121 LLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYED 200 (645)
Q Consensus 121 LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~ 200 (645)
|||+|+|||++|+++|+++|.+++.||+++.+++++||+++|||++|+++|++|++++ . + ...|++.+++
T Consensus 97 LLl~G~LPt~~el~~f~~~l~~~~~lp~~~~~~i~~~p~~~hPM~~L~~~v~aL~~~~--~-----~---~~~~~~~~~~ 166 (427)
T 3msu_A 97 ALIYGELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEH--I-----H---NGQKESQDEV 166 (427)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHH--H-----H---TTSCCCHHHH
T ss_pred HHHcCcCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhc--c-----C---CCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998654 1 1 1247889999
Q ss_pred HHHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCC------ChHHHHHHHHHHHHhccCCCCCcchhhh
Q psy14235 201 SMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD------NHQFTELMRLYLTIHSDHEGGNVSAHTV 274 (645)
Q Consensus 201 a~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~------~~~~~~~l~~~LiLhADHeg~n~ST~aa 274 (645)
+++|||++|+|+|++||+ +.|+++++|++++||++||++||++. ++..+++||++|||||||| +|+||||+
T Consensus 167 a~rLiAk~pti~a~~yr~--~~G~~~~~p~~~ls~a~NfL~ml~~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~ta 243 (427)
T 3msu_A 167 AKNIVAKIATIAAMAYRH--NHGKKFLEPKMEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHE-QNASTSTV 243 (427)
T ss_dssp HHHHHHHHHHHHHHHHHH--HTTCCCCCCCTTSCHHHHHHHHHHCSSTTCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HcCCCCCCCCCccCHHHHHHHHHhcccccCCCCHHHHHHHHHHHhhccCCC-CChhHHHH
Confidence 999999999999999996 47999999999999999999999764 7788999999999999999 89999999
Q ss_pred hhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC--cccccCCCCCCCC
Q psy14235 275 HLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQ--VVPGYGHAVLRKT 352 (645)
Q Consensus 275 RvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~--~IpGFGH~Vyk~~ 352 (645)
|+||||++|+|+|++|||++|+||+||||||+|++||+++ + +++++++||++.+++|+ +||||||||||+.
T Consensus 244 RvvaSt~ad~ysavaAgi~aL~GPlHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~~i~GFGHrVYk~~ 316 (427)
T 3msu_A 244 RLSGSTGNSPYAAIIAGITALWGPAHGGANEAVLKMLSEI----G---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNT 316 (427)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSHHHHCHHHHHHHHHHHH----C---STTHHHHHHHHHHTC-----CCSBCCSSSSSC
T ss_pred HHHHccCCCHHHHHHHHHHHccCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhCCCCcCcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999876 4 35899999999999999 9999999999999
Q ss_pred CccHHHHHHHHHhhC-----CCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecc
Q psy14235 353 DPRYTCQREFAQKHL-----PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSR 427 (645)
Q Consensus 353 DPRa~~L~~~a~~~~-----~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR 427 (645)
|||+++|+++|++++ +++++++++.++|+++++ +++|+.|+++||||||+|+++++||||. ++||+||++||
T Consensus 317 DPRa~~Lk~~a~~l~~~~g~~~~~~~~la~~le~~a~~--d~~~~~k~l~pNVDfysg~i~~~lGip~-~~ft~lFaisR 393 (427)
T 3msu_A 317 DPRATAMKKNCEEILAKLGHSDNPLLTVAKKLEEIALQ--DEFFIERKLFSNVDFYSGIILKAMGIPE-DMFTAIFALAR 393 (427)
T ss_dssp CHHHHHHHHHTHHHHHHGGGCSSHHHHHHHHHHHHHC--------CCCCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhh--cccccccCCCCChHHHHHHHHHHcCCCc-cccceehhHHh
Confidence 999999999998752 368999999999999987 7899999999999999999999999995 99999999999
Q ss_pred hhhhhHHHHHHHHhC-CCCCCCCcccchhhH
Q psy14235 428 ALGVLASLIWDRALG-LPIERPKSLSTNDLV 457 (645)
Q Consensus 428 ~~GwlAH~ie~~~~~-~pI~RPrs~y~~~~~ 457 (645)
++||+||++||...+ .+|+||+|+|+|+.+
T Consensus 394 ~~Gw~AH~~Eq~~~p~~rI~RPr~~Y~G~~~ 424 (427)
T 3msu_A 394 TSGWISQWIEMVNDPAQKIGRPRQLYTGATN 424 (427)
T ss_dssp HHHHHHHHHHHHHCTTCCCCCCEEEECSCCS
T ss_pred HHHHHHHHHHHHhCCCCceeCCCceecCCCC
Confidence 999999999999873 579999999999643
No 3
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=100.00 E-value=6.2e-99 Score=822.05 Aligned_cols=382 Identities=27% Similarity=0.402 Sum_probs=345.3
Q ss_pred cchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCCe-eecCCCHHHHHhhCCCCCCCCCCCHHHHHHH
Q psy14235 43 EQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWL 121 (645)
Q Consensus 43 ~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~Gi-~YRGy~I~eLa~~~p~~~~~~~~~fEev~~L 121 (645)
.++.+.|++++++++ |.+|+| .||+|+++..|+||+||+++|+ +||||+|+||+++ .+||||+||
T Consensus 31 ~~~~~~d~~~l~~~~--g~~t~~---~Gl~g~~~~~S~Is~idg~~G~L~YRGy~I~dLa~~---------~~feEvayL 96 (436)
T 2h12_A 31 LGPDVIDIRKLPAQL--GVFTFD---PGYGETAACNSKITFIDGDKGVLLHRGYPIAQLAEN---------ASYEEVIYL 96 (436)
T ss_dssp BSCCEEECTTHHHHH--SCEEEC---TTCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHH
T ss_pred CCCceeeehhhcccC--CcEeeC---CccCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhc---------CCHHHHHHH
Confidence 345556888888777 999999 5788889999999999999995 9999999999998 589999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHH
Q psy14235 122 LVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDS 201 (645)
Q Consensus 122 Ll~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a 201 (645)
||+|+|||++|+++|+++|.+++.+|+++.++++++|+++|||++|+++|++|+++++- ..++ ...+..++++
T Consensus 97 Ll~G~LPt~~el~~f~~~l~~~~~lp~~v~~~~~~~p~~~hPM~~l~~~v~aL~~~~~~------~~~~-~~~~~~~~~a 169 (436)
T 2h12_A 97 LLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYPD------ANDI-AIPANRDLAA 169 (436)
T ss_dssp HHHSSCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGGGCC---------------CCHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCcc------cccC-CCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986432 1111 2246788999
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCC-------CChHHHHHHHHHHHHhccCCCCCcchhhh
Q psy14235 202 MDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGF-------DNHQFTELMRLYLTIHSDHEGGNVSAHTV 274 (645)
Q Consensus 202 ~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~-------~~~~~~~~l~~~LiLhADHeg~n~ST~aa 274 (645)
++|||++|+|+|++||+ +.|+++++|+++++|++||++||.+ .++..+++||++|||||||| +|+||||+
T Consensus 170 ~rLiAk~ptiaa~~yr~--~~g~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLhADHe-~NaSTfta 246 (436)
T 2h12_A 170 MRLIAKIPTIAAWAYKY--TQGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHE-QNASTSTV 246 (436)
T ss_dssp HHHHHHHHHHHHHHHHH--HHTCCCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hcCCCCCCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheeecCCC-CchHHHHH
Confidence 99999999999999996 4788888999999999999999975 47889999999999999998 89999999
Q ss_pred hhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC--CcccccCCCCCCCC
Q psy14235 275 HLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSG--QVVPGYGHAVLRKT 352 (645)
Q Consensus 275 RvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g--~~IpGFGH~Vyk~~ 352 (645)
|+||||++|+|+|++|||++|+||+||||||+|++||++| | +++++++||++.++++ ++||||||||||++
T Consensus 247 RvvaSt~ad~ysaiaAgi~aL~GPlHGGAne~v~~ml~ei----~---~~~~v~~~i~~~l~~~~g~~imGFGHrVYk~~ 319 (436)
T 2h12_A 247 RLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARI----G---KKENIPAFIAQVKDKNSGVKLMGFGHRVYKNF 319 (436)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHH----C---SGGGHHHHHHHHHCTTSCCCCTTBCCSSCSSC
T ss_pred HHHHhcCccHHHHHHHHHHhcCCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhccCCCcccCCCccccCCC
Confidence 9999999999999999999999999999999999999876 4 4689999999999955 99999999999999
Q ss_pred CccHHHHHHHHHhh---CC--CChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecc
Q psy14235 353 DPRYTCQREFAQKH---LP--DDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSR 427 (645)
Q Consensus 353 DPRa~~L~~~a~~~---~~--~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR 427 (645)
|||+++|+++|+++ .+ ++++++++.++|+++.+ +++|+.|++|||||||||+++++||||. ++||+||++||
T Consensus 320 DPRa~iLk~~a~~l~~~~g~~~~~~~~la~~lE~~al~--~~~~~~k~l~pNVDfysg~i~~~lGiP~-~~ft~lFaisR 396 (436)
T 2h12_A 320 DPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEKIALS--DDYFVQRKLYPNVDFYSGIILKAMGIPT-SMFTVLFAVAR 396 (436)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--SHHHHHTTCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh--hhhccccCCCcChHHHHHHHHHHhCCCh-hhhhhhhhhhc
Confidence 99999999999987 34 68999999999999844 4588889999999999999999999986 89999999999
Q ss_pred hhhhhHHHHHHHHhC-CCCCCCCcccchhhHh
Q psy14235 428 ALGVLASLIWDRALG-LPIERPKSLSTNDLVK 458 (645)
Q Consensus 428 ~~GwlAH~ie~~~~~-~pI~RPrs~y~~~~~~ 458 (645)
++||+||++||...+ .+|+||+++|+|+..+
T Consensus 397 ~~GW~AH~~Eq~~~~~~kI~RPr~~Y~G~~~r 428 (436)
T 2h12_A 397 TTGWVSQWKEMIEEPGQRISRPRQLYIGAPQR 428 (436)
T ss_dssp HHHHHHHHHHHHHSTTCCCCCCEEEECSCCCC
T ss_pred cccHHHHHHHHHhCCCCceecccccccCCCCC
Confidence 999999999999987 4699999999997433
No 4
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=100.00 E-value=5.7e-100 Score=826.73 Aligned_cols=381 Identities=25% Similarity=0.381 Sum_probs=347.3
Q ss_pred cchhHHHhHhhhCCcccceEEecccccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHH
Q psy14235 43 EQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWL 121 (645)
Q Consensus 43 ~~~~~~~l~~~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~L 121 (645)
.++.+.||+++++ + |.+|+|++ +.|+.+..|+||+|||++| ++||||+|+||+++ ++||||+||
T Consensus 24 ~~~~~~d~~~l~~-~--g~~~~d~G---l~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~---------~~feevayL 88 (426)
T 3l96_A 24 LGQDVIDIRTLGS-K--GVFTFDPG---FTSTTSCESKITFIDGDEGILLHRGFPIDQLATD---------SNYLEVCYI 88 (426)
T ss_dssp SSCCEEECTTHHH-H--TCCEECTT---SSSEEEEEESSEEEEGGGTEEEETTEEHHHHHHH---------SCHHHHHHH
T ss_pred CCCceeeeeeccc-C--CcEEeCCC---CCCceEEeEEeEEEECCCCEEEECCeEHHHHHhc---------CCHHHHHHH
Confidence 4556779999988 4 99999985 5566788999999999999 59999999999998 589999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHH
Q psy14235 122 LVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDS 201 (645)
Q Consensus 122 Ll~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a 201 (645)
||+|+|||++|+++|+++|.+++.||+++.+++++||+++|||++|+++|++|+++++.. .+ ...+++.++++
T Consensus 89 Ll~G~LPt~~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~l~~~vsaL~~~~~~~------~~-~~~~~~~~~~a 161 (426)
T 3l96_A 89 LLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDS------LD-VNNPRHREIAA 161 (426)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHTTGGGTCGGG------CC-TTSHHHHHHHH
T ss_pred HHCCcCCCHHHHHHHHHHHHHccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhCccc------cc-CCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998764422 11 12368889999
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCC-------ChHHHHHHHHHHHHhccCCCCCcchhhh
Q psy14235 202 MDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTV 274 (645)
Q Consensus 202 ~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~-------~~~~~~~l~~~LiLhADHeg~n~ST~aa 274 (645)
++|||++|+|+|++||+ +.|+++++|++++||++||++||++. ++..+++||++|||||||| +|+||||+
T Consensus 162 ~rLiAk~pti~a~~yr~--~~G~~~~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~ta 238 (426)
T 3l96_A 162 FRLLSKMPTMAAMCYKY--SIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHE-QNASTSTV 238 (426)
T ss_dssp HHHHHHHHHHHHHHHHH--HHTCCCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCS-SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHhhcccCC-CCchHHHH
Confidence 99999999999999996 46999999999999999999999764 6788999999999999999 89999999
Q ss_pred hhhhccCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC--cccccCCCCCCCC
Q psy14235 275 HLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQ--VVPGYGHAVLRKT 352 (645)
Q Consensus 275 RvvaSt~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~--~IpGFGH~Vyk~~ 352 (645)
|++|||++|+|+|++|||++|+||+||||||+|++||+++ + +++++++||++.+++|+ +||||||||||+.
T Consensus 239 RvvaSt~ad~ysaiaAgi~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~~~I~GfGHrVyk~~ 311 (426)
T 3l96_A 239 RTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEI----G---KKENIPEFVRRAKDKNDSFRLMGFGHRVYKNY 311 (426)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTTTSSHHHHHHHHHHHC----C---SSSSTTTTSGGGCCSSCCTGGGTBCCSSCSSC
T ss_pred HHHhccCCcHHHHHHHHHHhccCCccCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhCCCCcCcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999765 4 34789999999999999 9999999999999
Q ss_pred CccHHHHHHHHHhhC---C-CChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecch
Q psy14235 353 DPRYTCQREFAQKHL---P-DDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRA 428 (645)
Q Consensus 353 DPRa~~L~~~a~~~~---~-~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~ 428 (645)
|||+++|+++|++++ + ++++++++.++|+++++ +++|+.|+++||||||+|+++++||||. ++||+||++||+
T Consensus 312 DPRa~~l~~~a~~l~~~~g~~~~~~~~a~~le~~~~~--~~~~~~k~l~pNVDfysg~i~~~lGip~-~~ft~lFaisR~ 388 (426)
T 3l96_A 312 DPRATVMRETCHEVLKELGTKDDLLEVAMELENIALN--DPYFIEKKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMART 388 (426)
T ss_dssp CTTHHHHHHHHHHHHHHTCSCCSSTTHHHHHHHHHHH--CHHHHHHTCCBCHHHHHHHHHHHTTCCT-HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh--cccccccCCCCchHHHHHHHHHHcCCCc-ccchhhhHHHHH
Confidence 999999999998763 3 78999999999999976 6788899999999999999999999996 999999999999
Q ss_pred hhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 429 LGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 429 ~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+||+||++||+..+.||+||+++|+|+..+
T Consensus 389 ~Gw~AH~~Eq~~~~~~I~RPr~~Y~G~~~r 418 (426)
T 3l96_A 389 VGWIAHWSEMHSDGMKIARPRQLYTGYEKR 418 (426)
T ss_dssp HHHHHHHHHHHHHHCCCCCCEEEECSCCCC
T ss_pred HHHHHHHHHHHhcCCCccCCcceecCCCCC
Confidence 999999999999877899999999996443
No 5
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.5e-98 Score=808.59 Aligned_cols=375 Identities=21% Similarity=0.298 Sum_probs=331.3
Q ss_pred hHHHhHhhhCCcccceEEecc---cccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHH
Q psy14235 46 RVKNFRKNYGSTKVGEVTVDM---MYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWL 121 (645)
Q Consensus 46 ~~~~l~~~~g~~~ig~~t~d~---~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~L 121 (645)
..+.+|+.+|.+.++..|+|+ +..||+|+++..|+||+|||++| ++||||+|+||+++ .+||||+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~d~~~~~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~I~dLa~~---------~~fEevayL 95 (414)
T 3hwk_A 25 PLAAARSVAATKSMTAPTVDERPDIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAAR---------CSFEQVAFL 95 (414)
T ss_dssp -----------------------CCCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHH
T ss_pred eHHHHHHhhCCcccCCccccCCCCCCCCCCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhc---------CCHHHHHHH
Confidence 345789999999999999999 78999999999999999999999 79999999999998 589999999
Q ss_pred HhhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHH
Q psy14235 122 LVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDS 201 (645)
Q Consensus 122 Ll~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a 201 (645)
||+|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|+++++.. .+ |++.++++
T Consensus 96 Ll~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~vsaL~~~~~~~---------~~-~~~~~~~a 165 (414)
T 3hwk_A 96 LWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDE---------DD-AAANRAKA 165 (414)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHTCTTT---------TC-GGGHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCCcc---------cC-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876532 12 88999999
Q ss_pred HHHHHhhhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhc
Q psy14235 202 MDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGS 279 (645)
Q Consensus 202 ~~LiA~lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaS 279 (645)
++|||++|+|+|++||+ +.|.++++|+++++|++||++||++. ++..+++||++|||||||| +|+||||+|++||
T Consensus 166 ~rLiAk~pti~a~~yr~--~~g~~~~~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~NaST~taRvvaS 242 (414)
T 3hwk_A 166 MRMMAVLPTIVAIDMRR--RRGLPPIAPHSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHG-FNASTFAARVVTS 242 (414)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCCCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH--hCCCCCCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHh
Confidence 99999999999999996 48998999999999999999999875 7789999999999999999 8999999999999
Q ss_pred cCCChHHHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHH
Q psy14235 280 ALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQ 359 (645)
Q Consensus 280 t~ad~y~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L 359 (645)
|++|+|+|++|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|
T Consensus 243 t~ad~ysavaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~L 315 (414)
T 3hwk_A 243 TQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEI----G---DPANAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTM 315 (414)
T ss_dssp TTCCHHHHHHHHHHHHTSTTTTHHHHHHHHHHHHH----C---SGGGHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHH
T ss_pred cCCCHHHHHHHHHHHhcCCccCChHHHHHHHHHHh----C---CchHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHH
Confidence 99999999999999999999999999999999876 4 3688999999999999999999999999999999999
Q ss_pred HHHHHhh---CCCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHH
Q psy14235 360 REFAQKH---LPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLI 436 (645)
Q Consensus 360 ~~~a~~~---~~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~i 436 (645)
+++++++ .+++++++++.++|+++.+ .|+++||||||+|+++++||||. ++||+||++||++||+||++
T Consensus 316 ~~~a~~l~~~~g~~~~~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~ 387 (414)
T 3hwk_A 316 KRALERVGTVRDGQRWLDIYQVLAAEMAS-------ATGILPNLDFPTGPAYYLMGFDI-ASFTPIFVMSRITGWTAHIM 387 (414)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------HHCCCBCTHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH-------hcCCCCchHHHHHHHHHHhCCCH-HHHHHHHHHHhHHHHHHHHH
Confidence 9999865 4678999999999999843 38999999999999999999996 89999999999999999999
Q ss_pred HHHHhCCCCCCCCcccchhhHh
Q psy14235 437 WDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 437 e~~~~~~pI~RPrs~y~~~~~~ 458 (645)
||+..+ +|+||++.|+|+.++
T Consensus 388 Eq~~~~-riiRPr~~Y~G~~~r 408 (414)
T 3hwk_A 388 EQATAN-ALIRPLSAYCGHEQR 408 (414)
T ss_dssp HHHHSC-CCCCCEEEECSCCCC
T ss_pred HHHhcC-CCcCCCceeeCCCCC
Confidence 999876 799999999996544
No 6
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=100.00 E-value=6.5e-97 Score=801.08 Aligned_cols=379 Identities=28% Similarity=0.393 Sum_probs=353.0
Q ss_pred hhCCcccceEEecccccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHH
Q psy14235 53 NYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEA 131 (645)
Q Consensus 53 ~~g~~~ig~~t~d~~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~ 131 (645)
.|+.++++.+|++ +..||+|+++..|+||+||+++| ++||||+|+||+++ .+||||+||||+|+|||++
T Consensus 9 ~~~~~~~~~~~~~-~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dLa~~---------~~fEeva~LLl~G~lPt~~ 78 (409)
T 2ibp_A 9 KTTGKILQSPCGP-IIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEELARL---------STYEEVSYLILYGRLPTKR 78 (409)
T ss_dssp EESSCEECCTTSC-EEGGGTTCEEEEECSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHH
T ss_pred CCCCcccCcCCCC-CCCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHcc---------CCHHHHHHHHHCCCCcCHH
Confidence 6899999999988 77999999999999999999999 79999999999998 5899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhh----hhhcCCCCCCcChhhHHHHHHHHHHh
Q psy14235 132 QVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFA----KAYNDGVHKSKYWEYVYEDSMDLIAK 207 (645)
Q Consensus 132 el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~----~ay~~g~~k~~~~~~~~~~a~~LiA~ 207 (645)
|+++|+++|.+++.+|+.+.++++.+|++ |||++|+++|++|+++++.+ ++|..|..|.++|+..++++++|||+
T Consensus 79 el~~f~~~l~~~~~lp~~~~~~~~~~p~~-hPM~~l~~~v~aL~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~a~~Lia~ 157 (409)
T 2ibp_A 79 ELEDYINRMKKYRELHPATVEVIRNLAKA-HPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAK 157 (409)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHhCCcc-CchHHHHHHHHHHhccCccccchhhhhhcccccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999987765 46788888877899999999999999
Q ss_pred hhHHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChH
Q psy14235 208 LPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPY 285 (645)
Q Consensus 208 lP~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y 285 (645)
+|+|+|++||+. .|+++++|+++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|
T Consensus 158 ~p~i~a~~y~~~--~g~~~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg-~naST~aaRv~aSt~ad~~ 234 (409)
T 2ibp_A 158 MPTIVAYHYRFS--RGLEVVRPRDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHE-VPASTFAAHVVASTLSDLY 234 (409)
T ss_dssp HHHHHHHHHHHH--TTCCCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHH--cCCCcccCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHhhcCCcHH
Confidence 999999999964 6888888999999999999999764 7889999999999999998 8999999999999999999
Q ss_pred HHHHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-CCcccccCCCCCCCCCccHHHHHHHHH
Q psy14235 286 LSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKS-GQVVPGYGHAVLRKTDPRYTCQREFAQ 364 (645)
Q Consensus 286 ~avaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~-g~~IpGFGH~Vyk~~DPRa~~L~~~a~ 364 (645)
+|++|||++|+||+|||||++|++||+++ + +++++++||++.+++ |++||||||||||+.|||+++|+++++
T Consensus 235 savaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~ 307 (409)
T 2ibp_A 235 SSVAAAIAALKGPLHGGANEMAVRNYLEI----G---TPAKAKEIVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSR 307 (409)
T ss_dssp HHHHHHHHHHTSTTTSCHHHHHHHHHHHH----C---CGGGHHHHHHHHTSTTCCCCTTBCCSSCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCccCCchHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcCcCCCccccCCCCCchHHHHHHHH
Confidence 99999999999999999999999999876 4 468899999999999 999999999999999999999999999
Q ss_pred hhC---CCC-hHHHHHHHHHHhc--CchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHH
Q psy14235 365 KHL---PDD-SLFKLVSQVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWD 438 (645)
Q Consensus 365 ~~~---~~~-~~~~la~~ie~v~--~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~ 438 (645)
++. +.+ ++++++.+||+++ .+ +++.|+++||||||+|+++++||||. ++||+||++||++||+||++||
T Consensus 308 ~l~~~~~~~g~~~~~a~~le~~~l~~~----~~~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq 382 (409)
T 2ibp_A 308 DYVAKFGDPQNLFAIASAIEQEVLSHP----YFQQRKLYPNVDFWSGIAFYYMGIPY-EYFTPIFAMSRVVGWVAHVLEY 382 (409)
T ss_dssp HHHHHHCCTTCHHHHHHHHHHHHHHCH----HHHHTTCCBCGGGTHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHccch----hhhhcCCCCChHHHHHHHHHHhCCCH-HhhhhHHHHhccccHHHHHHHH
Confidence 883 444 9999999999998 44 45568999999999999999999986 8999999999999999999999
Q ss_pred HHhCCCCCCCCcccchhhHh
Q psy14235 439 RALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 439 ~~~~~pI~RPrs~y~~~~~~ 458 (645)
+..+ +|+||++.|+|+..+
T Consensus 383 ~~~~-~i~RP~~~Y~G~~~r 401 (409)
T 2ibp_A 383 WENN-RIFRPRACYIGPHDL 401 (409)
T ss_dssp GGGC-CCCCCEEEECSCCCC
T ss_pred HhcC-CccCchhhccCCCCC
Confidence 9988 699999999997443
No 7
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-96 Score=786.01 Aligned_cols=354 Identities=26% Similarity=0.436 Sum_probs=326.7
Q ss_pred ccccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc
Q psy14235 66 MMYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRA 144 (645)
Q Consensus 66 ~~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~ 144 (645)
++..||+|+++..|+||+||+++| ++||||||+||+++ .+||||+||||+|+|||++|+++|+++|.+++
T Consensus 1 ~~~~Gl~g~~~~~T~Is~id~~~G~L~YRGy~i~dLa~~---------~~feeva~LLl~G~lPt~~el~~f~~~l~~~~ 71 (367)
T 2p2w_A 1 MIQKGLEGVKICESSICYLDGINGRLYYRGIPVEELAEK---------STFEETAYFLWYGKLPTKSELEEFKRKMADYR 71 (367)
T ss_dssp CCCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCcCCCCeeeeeeCeEEECCCCEEEECCeeHHHHHcC---------CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Confidence 356899999999999999999999 79999999999998 58999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCC
Q psy14235 145 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGK 224 (645)
Q Consensus 145 ~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~ 224 (645)
.+|+.+.++|+.+|+++|||++|+++|++|+++++ + |+..++++++|||++|+|+|++||+. .|+
T Consensus 72 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~------------~-~~~~~~~a~~lia~~p~i~a~~y~~~--~g~ 136 (367)
T 2p2w_A 72 ELPAEALGILYHLPKNLHYIDVLKIFLSIHGSMDG------------N-DEDLREKAIRVASVFPTILAYYYRYS--KGK 136 (367)
T ss_dssp CCCHHHHHHHTTSCSCCCHHHHHHHHHSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHHH--TTC
T ss_pred CCCHHHHHHHHhCccCCChHHHHHHHHHHHhccCC------------C-hHHHHHHHHHHHHHHHHHHHHHHHHH--cCC
Confidence 99999999999999999999999999999997532 1 67788999999999999999999964 688
Q ss_pred ccccCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChH
Q psy14235 225 GIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304 (645)
Q Consensus 225 ~~~~p~~~l~~a~nfl~ml~~~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn 304 (645)
++++|++++||++||++||.+..+..+++||++|||||||| +|+||||+||+|||++|+|+|++|||++|+||+|||||
T Consensus 137 ~~i~p~~~l~~a~nfl~ml~~~~~~~~~~ld~~LvL~ADHg-~NaSTftaRvvaSt~ad~ysavaagi~aL~GPlHGGAn 215 (367)
T 2p2w_A 137 ELIRPRKDLSHVENFYYMMFGERNEKIRLLESAFILLMEQD-INASTFAALVIASTLSDLYSCIVGALGALKGPLHGGAS 215 (367)
T ss_dssp CCCCCCTTSCHHHHHHHHHHSCCCTTHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHH
T ss_pred CCCCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHHccCCccCChH
Confidence 88889999999999999998766888999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Q psy14235 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVP 384 (645)
Q Consensus 305 ~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~ 384 (645)
++|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++.+++++++++.+||+++
T Consensus 216 e~v~~ml~ei----~---~~~~~~~~i~~~l~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~- 287 (367)
T 2p2w_A 216 EKVPPMLEEI----G---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYI- 287 (367)
T ss_dssp HHHHHHHHHH----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHh----c---CchhHHHHHHHHHHcCCccccCCccccCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHH-
Confidence 9999999876 4 4688999999999999999999999999999999999999999866789999999999996
Q ss_pred chhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 385 PVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 385 ~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
.+++ .|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|+.++
T Consensus 288 ---~~~~-~k~l~pNVDf~sg~v~~~lGip~-~~~t~lFai~R~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G~~~r 355 (367)
T 2p2w_A 288 ---VSNK-IKNIYPNVDLYSSVLFEELGFPR-NMFTALFATARVVGWTAHVIEYVSDN-KLIRPTSEYVGPMDV 355 (367)
T ss_dssp ---HHTT-GGGCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCCCCCSCCSC
T ss_pred ---HHHh-ccCCCCChHHHHHHHHHHhCCCh-hhhhhHHHHhccccHHHHHHHHHhcC-CccCccccccCCCCC
Confidence 4555 79999999999999999999986 89999999999999999999999887 699999999996443
No 8
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=100.00 E-value=2.7e-96 Score=787.85 Aligned_cols=357 Identities=22% Similarity=0.314 Sum_probs=319.9
Q ss_pred ceEEecccccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHH
Q psy14235 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (645)
Q Consensus 60 g~~t~d~~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~ 138 (645)
|.+|+|+ ||+|+.+..|+||+|||++| |+||||+|+||+++ .+||||+||||+|+|||++|+++|++
T Consensus 3 ~~~~~~~---Gl~gv~~~~t~Is~idg~~g~L~YRGy~I~dLa~~---------~~feev~yLLl~G~lPt~~el~~f~~ 70 (375)
T 3tqg_A 3 AMTKTAK---GLRGQSAGETSIATVGKEGHGLTYRGYRIEDLAAN---------ATFEEVAYLLLKNKLPTKSELDAYTK 70 (375)
T ss_dssp ----------------CCEESSEEECTTSCCEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred CCcccCC---ccCCCeEeeeeceEEeCCCCEEEECCeeHHHHHhc---------CCHHHHHHHHHcCcCcCHHHHHHHHH
Confidence 5678876 67788999999999999887 79999999999998 58999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHh
Q psy14235 139 SWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRN 218 (645)
Q Consensus 139 ~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~ 218 (645)
+|.+++.||+++.++|++||+++|||++|+++|++|+++++.+ .|+..++++++|||++|+|+|++||+
T Consensus 71 ~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~aL~~~~~~~-----------~~~~~~~~a~~LiAk~p~i~a~~yr~ 139 (375)
T 3tqg_A 71 KLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGNLEPEN-----------GFENEQNIADRLVAIFPAIQCYWYHY 139 (375)
T ss_dssp HHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCC-----------SGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCCCC-----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999765532 26788899999999999999999996
Q ss_pred hhcCCCccccCCCC-CCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhcc
Q psy14235 219 TFQGGKGIGAIDTN-KDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGL 295 (645)
Q Consensus 219 ~~~~G~~~~~p~~~-l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL 295 (645)
+ .|.+++.|+++ +||++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|
T Consensus 140 ~--~g~~~i~p~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe-~n~St~tarvvaSt~ad~ysavaagi~aL 216 (375)
T 3tqg_A 140 S--HHGKRIDTELDDLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHE-FNASTFAARVCSATLSDIYSAVTAAIATL 216 (375)
T ss_dssp H--HHCCCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred h--cCCCCcCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHccCCCHHHHHHHHHHhc
Confidence 4 67777888876 99999999999874 7889999999999999999 89999999999999999999999999999
Q ss_pred ccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChH
Q psy14235 296 AGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSL 372 (645)
Q Consensus 296 ~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~ 372 (645)
+||+|||||++|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++
T Consensus 217 ~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~l~~~~~~~~~ 289 (375)
T 3tqg_A 217 RGPLHGGANEAAMDLIMLY----K---TPSEAIAGIKRKLANKELIMGFGHAVYRERDPRNAIIKSWAQKLAPNAADGYL 289 (375)
T ss_dssp TSHHHHCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHTTTSTTTHH
T ss_pred cCcccCCHHHHHHHHHHHh----c---ChhHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHH
Confidence 9999999999999999764 3 468999999999999999999999999999999999999999874 56899
Q ss_pred HHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCccc
Q psy14235 373 FKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 452 (645)
Q Consensus 373 ~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y 452 (645)
++++.++|+++.+ .|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+ +|+||++.|
T Consensus 290 ~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFa~sR~~Gw~AH~~Eq~~~~-~iiRP~~~Y 360 (375)
T 3tqg_A 290 FDISDAIENTMQD-------EKKLFPNLDFYSATAYHFLNIPT-KLFTPIFVMSRVTGWCAHIFEQRKDN-RIIRPNADY 360 (375)
T ss_dssp HHHHHHHHHHHHH-------HHCCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEE
T ss_pred HHHHHHHHHHHHH-------hcCCCCChHHHHHHHHHHcCCCH-HHHHHHHHHHhHHHHHHHHHHHHhcC-CCCCCccee
Confidence 9999999999833 48999999999999999999986 89999999999999999999999987 599999999
Q ss_pred chhhHh
Q psy14235 453 TNDLVK 458 (645)
Q Consensus 453 ~~~~~~ 458 (645)
+|+.++
T Consensus 361 ~G~~~r 366 (375)
T 3tqg_A 361 IGPEEQ 366 (375)
T ss_dssp CSCCCB
T ss_pred cCCCCC
Confidence 997544
No 9
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=100.00 E-value=4.9e-96 Score=791.27 Aligned_cols=370 Identities=22% Similarity=0.312 Sum_probs=318.3
Q ss_pred hCCcccceEEecc---cccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCC
Q psy14235 54 YGSTKVGEVTVDM---MYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPS 129 (645)
Q Consensus 54 ~g~~~ig~~t~d~---~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt 129 (645)
.+.|++-..|.++ ...|++|+.+..|+||+|||++| |+||||+|+||+++ .+||||+||||+|+|||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~Gl~gv~~~~T~Is~idg~~g~L~YRGy~I~dLa~~---------~~fEevayLLl~G~LPt 87 (404)
T 3o8j_A 17 TDTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAEH---------CEFEEVAHLLIHGKLPT 87 (404)
T ss_dssp ------------------------CCCEESSEEECC-CCCEEETTEEHHHHHHH---------CCHHHHHHHHHTSSCCC
T ss_pred cCcchhhcCcccCCCCCCCCCCCceEeeeeceeeeCCCCEEEECCeEHHHHHhc---------CCHHHHHHHHHcCcCCC
Confidence 3566666777776 66899999999999999999888 79999999999998 58999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhh
Q psy14235 130 EAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLP 209 (645)
Q Consensus 130 ~~el~~f~~~L~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP 209 (645)
++|+++|+++|.+++.||+++.+++++||+++|||++|+++|++|+++++.+. +...+..++++++|||++|
T Consensus 88 ~~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~L~~~vsaL~~~~~~~~--------d~~~~~~~~~a~rLiAk~p 159 (404)
T 3o8j_A 88 RDELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKE--------GHTVSGARDIADKLLASLS 159 (404)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCCT--------TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCcccc--------cCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987665431 1235778899999999999
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHH
Q psy14235 210 VVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLS 287 (645)
Q Consensus 210 ~iaA~iyr~~~~~G~~~~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~a 287 (645)
+|+|++||+. ..|.++.+++++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|
T Consensus 160 ti~a~~yr~~-~g~~~i~~~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~N~St~taRvvaSt~ad~ysa 237 (404)
T 3o8j_A 160 SILLYWYHYS-HNGERIQPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSA 237 (404)
T ss_dssp HHHHHHHHHH-HHCCCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SSHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhcCCCHHHH
Confidence 9999999964 33444434558999999999999874 7789999999999999999 799999999999999999999
Q ss_pred HHHhhhccccccccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC
Q psy14235 288 FAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL 367 (645)
Q Consensus 288 vaAgl~aL~GPlHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~ 367 (645)
++|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++|+++.
T Consensus 238 vaagi~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~l~~~a~~l~ 310 (404)
T 3o8j_A 238 IIGAIGALRGPKHGGANEVSLEIQQRY----E---TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLS 310 (404)
T ss_dssp HHHHHHHHTSTTTTCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCcCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhcCCcccCCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999764 4 468999999999999999999999999999999999999999874
Q ss_pred ---CCChHHHHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCC
Q psy14235 368 ---PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLP 444 (645)
Q Consensus 368 ---~~~~~~~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~p 444 (645)
+++++++++.++|+++. +.|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+ +
T Consensus 311 ~~~g~~~~~~~a~~le~~~~-------~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-r 381 (404)
T 3o8j_A 311 EEGGSLKMYHIADRLETVMW-------ETKKMFPNLDWFSAVSYNMMGVPT-EMFTPLFVIARVTGWAAHIIEQRQDN-K 381 (404)
T ss_dssp HHHSCCHHHHHHHHHHHHHH-------HHHCCCBCTTTHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-C
T ss_pred HhcCCcHHHHHHHHHHHHHH-------HhcCCCcChHHHHHHHHHHcCCCh-HhHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 46899999999999972 368999999999999999999995 89999999999999999999999987 5
Q ss_pred CCCCCcccchhhHh
Q psy14235 445 IERPKSLSTNDLVK 458 (645)
Q Consensus 445 I~RPrs~y~~~~~~ 458 (645)
|+||++.|+|+.++
T Consensus 382 iiRPr~~Y~G~~~r 395 (404)
T 3o8j_A 382 IIRPSANYTGPEDR 395 (404)
T ss_dssp CCCCCEEECSCCSC
T ss_pred CCCCcceecCCCCC
Confidence 99999999997544
No 10
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=100.00 E-value=6.8e-96 Score=782.88 Aligned_cols=356 Identities=23% Similarity=0.340 Sum_probs=331.6
Q ss_pred ccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCC
Q psy14235 68 YGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (645)
Q Consensus 68 ~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~l 146 (645)
..||+|+++..|+||+||+++| ++||||||+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 2 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~---------~~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~l 72 (363)
T 2c6x_A 2 HYGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALN---------HSFEEAAYLILFGKLPSTEELQVFKDKLAAERNL 72 (363)
T ss_dssp CGGGTTCCCEEESSEEEETTTTEEEETTEEHHHHHHH---------SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTSC
T ss_pred CCcCCCCeeeeeeCeEEECCCCEEEEcCccHHHHHcc---------CCHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCC
Confidence 4799999999999999999999 79999999999998 5899999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcc
Q psy14235 147 PSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGI 226 (645)
Q Consensus 147 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~ 226 (645)
|+++.++++.+|+++|||++|+++|++|++ +. + .|++.++++++|||++|+|+|++||+. .|+++
T Consensus 73 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~-~~---~---------~~~~~~~~a~~Lia~~p~i~a~~~~~~--~g~~~ 137 (363)
T 2c6x_A 73 PEHIERLIQSLPNNMDDMSVLRTVVSALGE-NT---Y---------TFHPKTEEAIRLIAITPSIIAYRKRWT--RGEQA 137 (363)
T ss_dssp CHHHHHHHHHSCSSSCHHHHHHHHHHHHCC-SS---C---------CSSCCHHHHHHHHHHHHHHHHHHHHHH--TTCCC
T ss_pred CHHHHHHHHhCcccCCchHHHHHHHHhhcC-CC---C---------ChHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCC
Confidence 999999999999999999999999999987 21 1 156778899999999999999999964 68888
Q ss_pred ccCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChH
Q psy14235 227 GAIDTNKDWSANFTSMLGF--DNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304 (645)
Q Consensus 227 ~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn 304 (645)
++|+++++|++||++||++ +++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+|||||
T Consensus 138 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAn 216 (363)
T 2c6x_A 138 IAPSSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEHG-MNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAP 216 (363)
T ss_dssp CCCCTTSCSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCCC
T ss_pred cCCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHhcCccHHHHHHHHHHHcccCccCCch
Confidence 8899999999999999976 47889999999999999998 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Q psy14235 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVP 384 (645)
Q Consensus 305 ~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~ 384 (645)
++|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++++++++++++.++|+++.
T Consensus 217 e~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~ 289 (363)
T 2c6x_A 217 SAVTKMLEDI----G---EKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGNDRDLDLALHVEAEAI 289 (363)
T ss_dssp HHHHHHHHTC----C---SSTTHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----C---ChhhHHHHHHHHHHcCCcccCCCCcccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999764 4 35789999999999999999999999999999999999999998778999999999999996
Q ss_pred chhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhH
Q psy14235 385 PVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLV 457 (645)
Q Consensus 385 ~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~ 457 (645)
+...+||+.|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+ ||+||+++|+|+.+
T Consensus 290 ~~~g~yf~~k~l~pNVD~~sg~i~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~~ 360 (363)
T 2c6x_A 290 RLLEIYKPGRKLYTNVEFYAAAVMRAIDFDD-ELFTPTFSASRMVGWCAHVLEQAENN-MIFRPSAQYTGAIP 360 (363)
T ss_dssp HHHHHHSCSSCCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHTTTC-CCCCCEEEECSCCC
T ss_pred HhhccccccCCCCcChHHHHHHHHHHhCCCh-hhhhhhhHHhccccHHHHHHHHHHcC-CccCCccccCCCCC
Confidence 6211788999999999999999999999986 89999999999999999999999998 89999999999653
No 11
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=100.00 E-value=5.2e-95 Score=779.92 Aligned_cols=356 Identities=24% Similarity=0.375 Sum_probs=329.9
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+++..|+||+||+++| ++||||+|+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 6 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~---------~~feeva~LL~~G~lPt~~el~~f~~~l~~~~~lp 76 (377)
T 1o7x_A 6 KGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNY---------GSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVP 76 (377)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred cccCCCeeeeeeCeEEECCCCEEEECCccHHHHHcC---------CCHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCCC
Confidence 688999999999999999999 79999999999998 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+.+.++++.+|+++|||++|+++|++|+++++ +. + .|+..++++++|||++|+|+|++||+. .|++++
T Consensus 77 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~------~~-~---~~~~~~~~a~~Lia~~p~i~a~~y~~~--~g~~~i 144 (377)
T 1o7x_A 77 QEVLDTIYLMPKEADAIGLLEVGTAALASIDK------NF-K---WKENDKEKAISIIAKMATLVANVYRRK--EGNKPR 144 (377)
T ss_dssp HHHHHHHHHSCTTSCHHHHHHHHHHHHHHHCC------CC-C---SSSSHHHHHHHHHHHHHHHHHHHHHHH--TTCCCC
T ss_pred HHHHHHHHhCcccCCcHHHHHHHHHHHhhcCC------Cc-C---CHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCC
Confidence 99999999999999999999999999997543 11 1 278889999999999999999999964 688888
Q ss_pred cCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGF--DNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
+|+++++|++||++||++ .++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+|||||+
T Consensus 145 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~ad~~savaagi~aL~GplHGGAne 223 (377)
T 1o7x_A 145 IPEPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHE-VPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAE 223 (377)
T ss_dssp CCCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHH
T ss_pred CCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCC-CChHHHHHHHHHhcCCcHHHHHHHHHHhcCCCCCCChHH
Confidence 899999999999999976 47889999999999999998 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHH-hcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CC-ChHHHHHHHHH
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTL-KSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PD-DSLFKLVSQVY 380 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l-~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~-~~~~~la~~ie 380 (645)
+|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. ++ +++++++.+||
T Consensus 224 ~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~l~~~~~~~~~~~~~a~~le 296 (377)
T 1o7x_A 224 EAFKQFIEI----G---DPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLE 296 (377)
T ss_dssp HHHHHHHHH----C---SGGGHHHHHHHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----C---ChhHHHHHHHHHHHhcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999876 4 4688999999999 99999999999999999999999999999883 45 78999999999
Q ss_pred HhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 381 KVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 381 ~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+++++ +++.|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+.+|+||++.|+|+.++
T Consensus 297 ~~~~~----~~~~k~l~pNVD~~sg~v~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y~G~~~r 369 (377)
T 1o7x_A 297 ELGIK----QFSSKGIYPNTDFYSGIVFYALGFPV-YMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEYQ 369 (377)
T ss_dssp HHHHH----HHTTTTCCBCTTTTHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCEEEECSCSCC
T ss_pred HHHHH----HHhhcCCCCChHHHHHHHHHHhCCCh-hhhhhHHHHhhhccHHHHHHHHHhccCCccCCcccccCCCCC
Confidence 99843 56789999999999999999999986 899999999999999999999999933899999999997443
No 12
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=100.00 E-value=2.7e-94 Score=774.45 Aligned_cols=358 Identities=25% Similarity=0.377 Sum_probs=330.8
Q ss_pred cCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14235 69 GGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (645)
Q Consensus 69 ~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp 147 (645)
.||+|+++..|+||+||+++| ++||||+|+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 5 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~---------~~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~lp 75 (377)
T 1iom_A 5 RGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEK---------SSFEETTFLLLHGRLPRRQELEEFSAALARRRALP 75 (377)
T ss_dssp GGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCC
T ss_pred cccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHcc---------CCHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCCC
Confidence 688999999999999999999 79999999999998 58999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCccc
Q psy14235 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIG 227 (645)
Q Consensus 148 ~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~~ 227 (645)
+.+.++|+.+|+++|||++|+++|++|+++++.+ . +.+|+..++++++|||++|+|+|++||+. .|++++
T Consensus 76 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~-------~-~~~~~~~~~~a~~Lia~~p~i~a~~y~~~--~g~~~i 145 (377)
T 1iom_A 76 AHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTE-------G-DISREALYEKGLDLIAKFATIVAANKRLK--EGKEPI 145 (377)
T ss_dssp HHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCTTT-------T-CCSHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCC
T ss_pred HHHHHHHHhCCcCCCchhHHHHHHHHHhccCCCc-------c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCC
Confidence 9999999999999999999999999999865421 1 23689999999999999999999999964 688888
Q ss_pred cCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChHH
Q psy14235 228 AIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305 (645)
Q Consensus 228 ~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn~ 305 (645)
+|+++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+|||||+
T Consensus 146 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne 224 (377)
T 1iom_A 146 PPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHG-FNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANE 224 (377)
T ss_dssp CCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHcccCccCChhH
Confidence 8999999999999999764 7889999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q psy14235 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKV 382 (645)
Q Consensus 306 ~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~~ie~v 382 (645)
+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.++|++
T Consensus 225 ~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~ 297 (377)
T 1iom_A 225 AVMRMIQEI----G---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEE 297 (377)
T ss_dssp HHHHHHHHH----C---SHHHHHHHHHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHh----c---CchhHHHHHHHHHHCCCcccCCCCcccCCCCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999876 4 468999999999999999999999999999999999999999873 678999999999999
Q ss_pred cCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 383 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 383 ~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
+.+ +++ .|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+.+|+||++.|+|+.++
T Consensus 298 ~~~---~~~-~k~l~pNVD~~sg~i~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y~G~~~r 368 (377)
T 1iom_A 298 AGK---VLN-PRGIYPNVDFYSGVVYSDLGFSL-EFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGELDV 368 (377)
T ss_dssp HHH---HHT-TTTCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSSC
T ss_pred HHH---Hhc-cCCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHhccccHHHHHHHHHhhcCCcccccccccCCCCC
Confidence 833 156 79999999999999999999986 899999999999999999999999444799999999996543
No 13
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.6e-95 Score=778.49 Aligned_cols=360 Identities=24% Similarity=0.344 Sum_probs=331.7
Q ss_pred EEecccccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy14235 62 VTVDMMYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSW 140 (645)
Q Consensus 62 ~t~d~~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L 140 (645)
+|+| .||+|+++..|+||+||+++| ++||||||+||+++ .+||||+||||+|+|||++|+++|+++|
T Consensus 3 ~~~~---~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~---------~~fEeva~LL~~G~lP~~~el~~f~~~l 70 (378)
T 1vgm_A 3 VEVS---RGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNY---------ASYEELIHLMLYGELPNRQQLNQIKGII 70 (378)
T ss_dssp CCCS---GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred cccC---CccCCCeeeeeeceEEECCCCeEEEcCeeHHHHHhc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566 688999999999999999999 79999999999998 5899999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhh
Q psy14235 141 ASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTF 220 (645)
Q Consensus 141 ~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~ 220 (645)
.+++.+|+.+.++++.+|+++|||++|+++|++|+++++ +.. + |+..++++++|||++|+|+|++||+.
T Consensus 71 ~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~------~~~---~-~~~~~~~a~~Lia~~p~i~a~~y~~~- 139 (378)
T 1vgm_A 71 NESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYD------PKW---N-RATNKELAVQIIAKTATITANIYRAK- 139 (378)
T ss_dssp HTCCCCCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHC------CCC---C-TTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHccCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHhccCC------ccC---C-HHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999997532 211 2 78889999999999999999999964
Q ss_pred cCCCccccCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccc
Q psy14235 221 QGGKGIGAIDTNKDWSANFTSMLGF--DNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGP 298 (645)
Q Consensus 221 ~~G~~~~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GP 298 (645)
.|+++++|+++++|++||++||++ .++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||
T Consensus 140 -~g~~~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~Gp 217 (378)
T 1vgm_A 140 -EGLKPKIPEPSESYAESFLAATFGKKPTQEEIKAMDASLILYTDHE-VPASTTAALVASSTLSDMYSCIVAALAALKGP 217 (378)
T ss_dssp -TTCCCCCCCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTST
T ss_pred -CCCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCCcHHHHHHHHHHhccCC
Confidence 688888899999999999999976 47889999999999999998 79999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-hcCCcccccCCCCCCCCCccHHHHHHHHHhhC---C-CChHH
Q psy14235 299 LHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTL-KSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---P-DDSLF 373 (645)
Q Consensus 299 lHGGAn~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l-~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~-~~~~~ 373 (645)
+|||||++|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. + +++++
T Consensus 218 lHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ 290 (378)
T 1vgm_A 218 LHGGAAEEAFKQFVEI----G---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKKYY 290 (378)
T ss_dssp TTSCHHHHHHHHHHHH----C---SGGGHHHHHHHHTTTSCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCChHHHHHHHHHHh----C---CHhHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999876 4 4688999999999 99999999999999999999999999999884 4 56899
Q ss_pred HHHHHHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccc
Q psy14235 374 KLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLST 453 (645)
Q Consensus 374 ~la~~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~ 453 (645)
+++.++|+++++ +++.|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+.+|+||++.|+
T Consensus 291 ~~a~~le~~~~~----~~~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~Y~ 365 (378)
T 1vgm_A 291 EIAERIEKLGVD----TFGSKHIYPNTDFYSGIVFYALGFPI-YMFTSLFALSRVLGWLAHIIEYVEEQHRLIRPRALYI 365 (378)
T ss_dssp HHHHHHHHHHHH----HHGGGTCCBCTTTTHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCEEEEC
T ss_pred HHHHHHHHHHHH----HHhhCCCCCChHHHHHHHHHHhCCCH-HhhhHHHHHHhhccHHHHHHHHHhccCCccCcccccC
Confidence 999999999843 56789999999999999999999986 8999999999999999999999999338999999999
Q ss_pred hhhHh
Q psy14235 454 NDLVK 458 (645)
Q Consensus 454 ~~~~~ 458 (645)
|+.++
T Consensus 366 G~~~r 370 (378)
T 1vgm_A 366 GPEKR 370 (378)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97443
No 14
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=100.00 E-value=2.5e-94 Score=773.25 Aligned_cols=358 Identities=28% Similarity=0.404 Sum_probs=332.2
Q ss_pred ccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCC
Q psy14235 68 YGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (645)
Q Consensus 68 ~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~l 146 (645)
..||+|+++..|+||+||+++| ++||||||+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 2 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~---------~~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~l 72 (371)
T 1aj8_A 2 AKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAEL---------STFEEVVYLLWWGKLPSLSELENFKKELAKSRGL 72 (371)
T ss_dssp CGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCC
T ss_pred CCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHcc---------CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCC
Confidence 3799999999999999999999 79999999999998 5899999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcc
Q psy14235 147 PSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGI 226 (645)
Q Consensus 147 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~ 226 (645)
|+.+.++++.+|+++|||++|+++|++|+++++. .....+|+..++++++|||++|+|+|++||+. .|+++
T Consensus 73 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~-------~~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~--~g~~~ 143 (371)
T 1aj8_A 73 PKEVIEIMEALPKNTHPMGALRTIISYLGNIDDS-------GDIPVTPEEVYRIGISVTAKIPTIVANWYRIK--NGLEY 143 (371)
T ss_dssp CHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHSTT-------TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCC
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHHhccCCc-------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCC
Confidence 9999999999999999999999999999975432 11112689999999999999999999999964 68888
Q ss_pred ccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChH
Q psy14235 227 GAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304 (645)
Q Consensus 227 ~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn 304 (645)
++|+++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+|||||
T Consensus 144 i~p~~~ls~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAn 222 (371)
T 1aj8_A 144 VPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAV 222 (371)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCC-CChhHHHHHHHhhcCCcHHHHHHHHHHHcCCCccCCch
Confidence 88999999999999999764 7889999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Q psy14235 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVP 384 (645)
Q Consensus 305 ~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~~~~~~~~la~~ie~v~~ 384 (645)
++|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ +++++++++.+||+++
T Consensus 223 e~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~~~~~-~~~~~~~~a~~le~~~- 293 (371)
T 1aj8_A 223 EEAIKQFMEI----G---SPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKL-GDKKLFEIAERLERLV- 293 (371)
T ss_dssp HHHHHHHHHH----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHh----c---CchhHHHHHHHHHHcCCeeecCCccccCCCCccHHHHHHHHHHc-CCCHHHHHHHHHHHHH-
Confidence 9999999876 4 46889999999999999999999999999999999999999998 6789999999999997
Q ss_pred chhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 385 PVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 385 ~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
.++++.|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|+.++
T Consensus 294 ---~~~~~~k~l~pNVD~~sg~i~~~lGip~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~~r 362 (371)
T 1aj8_A 294 ---EEYLSKKGISINVDYWSGLVFYGMKIPI-ELYTTIFAMGRIAGWTAHLAEYVSHN-RIIRPRLQYVGEIGK 362 (371)
T ss_dssp ---HHHTTTTTCCBCTTTTHHHHHHTTTCCG-GGHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCEEEECSCCCB
T ss_pred ---HHhccCCCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHhccccHHHHHHHHHhcC-CccCchhhccCCCCC
Confidence 5577889999999999999999999986 89999999999999999999999887 699999999996443
No 15
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=100.00 E-value=3.3e-94 Score=774.81 Aligned_cols=361 Identities=22% Similarity=0.312 Sum_probs=330.6
Q ss_pred cccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcC
Q psy14235 67 MYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE 145 (645)
Q Consensus 67 ~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~ 145 (645)
+.+||+|+++..|+||+||+++| ++||||+|+||+++ .+||||+||||+|+|||++|+++|+++|.+++.
T Consensus 5 ~~~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~---------~~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~ 75 (378)
T 1a59_A 5 IHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAK---------CSFEQVAYLLWNSELPNDSELKAFVNFERSHRK 75 (378)
T ss_dssp CCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCS
T ss_pred CCCccCCCeeeeeeceEEECCCCeEEEcCccHHHHHhc---------CCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 44799999999999999999999 79999999999998 589999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCc
Q psy14235 146 LPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKG 225 (645)
Q Consensus 146 lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~ 225 (645)
+|+.+.++++.+|+++|||++|+++|++|+++++-. . +.+|+..++++++|||++|+|+|++||+. .|++
T Consensus 76 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~~~-------~-~~~~~~~~~~a~~Lia~~p~i~a~~y~~~--~g~~ 145 (378)
T 1a59_A 76 LDENVKGAIDLLSTACHPMDVARTAVSVLGANHARA-------Q-DSSPEANLEKAMSLLATFPSVVAYDQRRR--RGEE 145 (378)
T ss_dssp CCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCTTT-------T-CCSHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCC
T ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCCCc-------c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC
Confidence 999999999999999999999999999999865421 1 23689999999999999999999999964 6888
Q ss_pred cccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccCh
Q psy14235 226 IGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303 (645)
Q Consensus 226 ~~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGA 303 (645)
+++|+++++|++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+||||
T Consensus 146 ~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGA 224 (378)
T 1a59_A 146 LIEPREDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHS-FNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGA 224 (378)
T ss_dssp CCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTH
T ss_pred CCCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHccCCccCCc
Confidence 888999999999999999764 7889999999999999998 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCChHHHHHH
Q psy14235 304 NQEVLIWLKKLQQQVGDNVS---EEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVS 377 (645)
Q Consensus 304 n~~v~~~L~~i~~~ig~~~s---~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~~~~~la~ 377 (645)
|++|++||+++.+. |++.+ .+++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.
T Consensus 225 ne~v~~~l~~i~~~-~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~~~~a~ 303 (378)
T 1a59_A 225 NEAVMHTFEEIGIR-KDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYN 303 (378)
T ss_dssp HHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHH
T ss_pred hHHHHHHHHHHhhc-CCccccchHHHHHHHHHHHHhCCCeeeCCCCcccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999887432 22211 27899999999999999999999999999999999999999884 6789999999
Q ss_pred HHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhH
Q psy14235 378 QVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLV 457 (645)
Q Consensus 378 ~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~ 457 (645)
+||+++.+ .|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|+.+
T Consensus 304 ~le~~~~~-------~k~l~pNVD~~sg~i~~~lGip~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~~ 374 (378)
T 1a59_A 304 GLEAAMEE-------AKQIKPNLDYPAGPTYNLMGFDT-EMFTPLFIAARITGWTAHIMEQVADN-ALIRPLSEYNGPEQ 374 (378)
T ss_dssp HHHHHHHH-------HHCCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHTC-CCCCCCCCCCSCCC
T ss_pred HHHHHHHH-------HhCCCCChHHHHHHHHHHhCCCh-hhcchhhhhhcchhHHHHHHHHHhcC-CCcCchhhccCCCC
Confidence 99999833 28999999999999999999986 89999999999999999999999988 69999999999643
No 16
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=100.00 E-value=2.2e-94 Score=777.02 Aligned_cols=358 Identities=19% Similarity=0.319 Sum_probs=331.5
Q ss_pred cccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHh-hCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc
Q psy14235 67 MYGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQK-VLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRA 144 (645)
Q Consensus 67 ~~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~-~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~ 144 (645)
+..||+|+++..|+||+||+++| ++||||+|+||++ + .+||||+||||+|+|||++|+++|+++|.+++
T Consensus 7 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~~fEeva~LLl~G~lPt~~el~~f~~~l~~~~ 77 (385)
T 2ifc_A 7 ISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASG---------AQDEEIQYLFLYGNLPTEQELRKYKETVQKGY 77 (385)
T ss_dssp BCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHTT---------CCHHHHHHHHHHSSCCCHHHHHHHHHHHHGGG
T ss_pred CCCCcCCCeeeeeeCeEEECCCCEEEECCccHHHHHhcC---------CCHHHHHHHHHCCCCcCHHHHHHHHHHHHHcc
Confidence 34799999999999999999999 7999999999999 6 58999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCC
Q psy14235 145 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGK 224 (645)
Q Consensus 145 ~lp~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~ 224 (645)
.+|+.+.++++.+|+++|||++|+++|++|+++++ +. + ++|+..++++++|||++|+|+|++||+. .|+
T Consensus 78 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~------~~-~--~~~~~~~~~a~~Lia~~p~i~a~~y~~~--~g~ 146 (385)
T 2ifc_A 78 KIPDFVINAIRQLPRESDAVAMQMAAVAAMAASET------KF-K--WNKDTDRDVAAEMIGRMSAITVNVYRHI--MNM 146 (385)
T ss_dssp CCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHCT------TC-C--CCTTTHHHHHHHHHHHHHHHHHHHHHHH--TTC
T ss_pred CCCHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCC------cc-c--CCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCC
Confidence 99999999999999999999999999999997543 11 1 3688899999999999999999999964 688
Q ss_pred ccccCCCCCCHHHHHHHHhCC--CChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccC
Q psy14235 225 GIGAIDTNKDWSANFTSMLGF--DNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGL 302 (645)
Q Consensus 225 ~~~~p~~~l~~a~nfl~ml~~--~~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGG 302 (645)
++++|+++++|++||++||++ .++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+|||
T Consensus 147 ~~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGG 225 (385)
T 2ifc_A 147 PAELPKPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHE-VPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGG 225 (385)
T ss_dssp CCCCCCCCSCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCC-ccHHHHHHHHHHhcCCcHHHHHHHHHHHccCCccCC
Confidence 888899999999999999976 47889999999999999998 899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-hcCCcccccCCCCCCCCCccHHHHHHHHHhhC----CCChHHHHHH
Q psy14235 303 ANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTL-KSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL----PDDSLFKLVS 377 (645)
Q Consensus 303 An~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l-~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~----~~~~~~~la~ 377 (645)
||++|++||+++ + +++++++||++.+ ++|++||||||||||++|||+++|+++++++. +++++++++.
T Consensus 226 Ane~v~~ml~ei----~---~~~~~~~~i~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~ 298 (385)
T 2ifc_A 226 AAEAAIAQFDEI----K---DPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIAT 298 (385)
T ss_dssp HHHHHHHHHHHH----C---SGGGHHHHHHHHTTTSSSCCTTBCCSSCSSCCHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 999999999876 4 4688999999999 99999999999999999999999999999883 4688999999
Q ss_pred HHHHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCc--cccceeeeecchhhhhHHHHHHHHh-CCCCCCCCcccch
Q psy14235 378 QVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEM--NYYTVLFGVSRALGVLASLIWDRAL-GLPIERPKSLSTN 454 (645)
Q Consensus 378 ~ie~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~--~~~t~lFavsR~~GwlAH~ie~~~~-~~pI~RPrs~y~~ 454 (645)
+||+++++ +++.|+++||||||+|+++++|||| . ++||+||++||++||+||++||+.. + +|+||++.|+|
T Consensus 299 ~le~~~~~----~~~~k~l~pNVD~~sg~v~~~lGip-~~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G 372 (385)
T 2ifc_A 299 KLEDFGIK----AFGSKGIYPNTDYFSGIVYMSIGFP-LRNNIYTALFALSRVTGWQAHFIEYVEEQQ-RLIRPRAVYVG 372 (385)
T ss_dssp HHHHHHHH----HHGGGTCCBCTTTTHHHHHHHHTCC-SGGGHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECS
T ss_pred HHHHHHHH----HHhhcCCCCChHHHHHHHHHHcCCC-cchhhhhhHHHHhhcccHHHHHHHHHhccC-CccCcccccCC
Confidence 99999844 5677999999999999999999997 5 7999999999999999999999999 6 89999999999
Q ss_pred hhHh
Q psy14235 455 DLVK 458 (645)
Q Consensus 455 ~~~~ 458 (645)
+.++
T Consensus 373 ~~~r 376 (385)
T 2ifc_A 373 PAER 376 (385)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 7443
No 17
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.8e-94 Score=772.73 Aligned_cols=354 Identities=28% Similarity=0.432 Sum_probs=328.6
Q ss_pred ccCccCcceEEeeeeeecCCCC-eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCC
Q psy14235 68 YGGMRGIKGLVCETSVLDPEEG-IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (645)
Q Consensus 68 ~~Glrg~~~~~~eiS~iD~~~G-i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~l 146 (645)
..||+|+++..|+||+||+++| ++||||||+||+++ .+||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 4 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~---------~~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~l 74 (373)
T 1vgp_A 4 KKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEF---------SNFEEVSYLILYGKLPNREELNWFQEKLREERYL 74 (373)
T ss_dssp CTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHH---------CCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCCC
T ss_pred CCccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHcc---------CCHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCC
Confidence 4799999999999999999999 79999999999998 5899999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCChhHHHHHHHHhhcccchhhhhhcCCCCCCcChhhHHHHHHHHHHhhhHHHHHHHHhhhcCCCcc
Q psy14235 147 PSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGI 226 (645)
Q Consensus 147 p~~v~~~i~~lP~~~hPM~~l~~avsaL~~~~~~~~ay~~g~~k~~~~~~~~~~a~~LiA~lP~iaA~iyr~~~~~G~~~ 226 (645)
|+.+.++++.+|+++|||++|+++|++|+++++ + + |+..++++++|||++|+|+|++||+. .|+++
T Consensus 75 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-~----------~-~~~~~~~a~~Lia~~p~i~a~~y~~~--~g~~~ 140 (373)
T 1vgp_A 75 PDFIIKFLREVRKDAQPMDILRTAVSLLGIEDS-K----------N-DERTDIKGIKLISKFPTIVANYARLR--KGLDI 140 (373)
T ss_dssp CHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHCC-C----------C-SSCHHHHHHHHHHHHHHHHHHHHHHH--TTCCC
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHHhccCC-C----------C-hHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCC
Confidence 999999999999999999999999999997543 1 1 57788999999999999999999964 68888
Q ss_pred ccCCCCCCHHHHHHHHhCCC--ChHHHHHHHHHHHHhccCCCCCcchhhhhhhhccCCChHHHHHHhhhccccccccChH
Q psy14235 227 GAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304 (645)
Q Consensus 227 ~~p~~~l~~a~nfl~ml~~~--~~~~~~~l~~~LiLhADHeg~n~ST~aaRvvaSt~ad~y~avaAgl~aL~GPlHGGAn 304 (645)
++|++++||++||++||++. ++..+++||++|||||||| +|+||||+|++|||++|+|+|++|||++|+||+|||||
T Consensus 141 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~aL~GplHGGAn 219 (373)
T 1vgp_A 141 IEPDPKLSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHE-MNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGAN 219 (373)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTCTTSSSCC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHhcCCCCcCCHH
Confidence 88999999999999999764 7889999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCcccccCCCCCCCCCccHHHHHHHHHhhC---CCC--hHHHHHHHH
Q psy14235 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDD--SLFKLVSQV 379 (645)
Q Consensus 305 ~~v~~~L~~i~~~ig~~~s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DPRa~~L~~~a~~~~---~~~--~~~~la~~i 379 (645)
++|++||+++ + +++++++||++.+++|++||||||||||++|||+++|+++++++. +.+ ++++++.+|
T Consensus 220 e~v~~ml~~i----~---~~~~~~~~i~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~a~~l 292 (373)
T 1vgp_A 220 YEALKMFKEI----G---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKV 292 (373)
T ss_dssp CHHHHHHHHS----C---SSSSHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----c---CchhHHHHHHHHHHcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 9999999765 4 357899999999999999999999999999999999999999883 555 899999999
Q ss_pred HHhcCchhhhhCCCCCCCCchhhHHHHHHHHcCCCCccccceeeeecchhhhhHHHHHHHHhCCCCCCCCcccchhhHh
Q psy14235 380 YKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 458 (645)
Q Consensus 380 e~v~~~vl~~~~k~k~l~PNVD~~sg~l~~~lGlp~~~~~t~lFavsR~~GwlAH~ie~~~~~~pI~RPrs~y~~~~~~ 458 (645)
|+++ .++++.|+++||||||+|+++++||||. ++||+||++||++||+||++||+..+ +|+||++.|+|+.++
T Consensus 293 e~~~----~~~~~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~~~r 365 (373)
T 1vgp_A 293 EEIG----IKYLGPKGIYPNVDFFSSIVFYSLGFEP-DFFPAVFASARVVGWVAHIMEYIKDN-KIIRPKAYYKGEIGK 365 (373)
T ss_dssp HHHH----HHHHGGGTCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHGGGC-CCCCCCCCCCSCCCC
T ss_pred HHHH----HHhcccCCCCCChHHHHHHHHHHcCCCH-HhhhhhHHhhccccHHHHHHHHHhcC-CCcCccccccCCCCC
Confidence 9997 5567789999999999999999999986 89999999999999999999999988 699999999996443
No 18
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Probab=100.00 E-value=6.9e-39 Score=311.86 Aligned_cols=130 Identities=19% Similarity=0.278 Sum_probs=117.5
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCCCcccch----hhhc
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICIS----LTHS 536 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~~~~~~W----l~~i 536 (645)
++++|++|+|||+ ||++||||++||+|+.++||||||+||+||||||+|++||||+|+++|...|++| |++|
T Consensus 27 ~l~~i~~f~TVE~----FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~w~i~~~k~~~d~~W~~lll~~I 102 (177)
T 2idr_A 27 TIHPIHTFSTVED----FWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMI 102 (177)
T ss_dssp EECCEEEEEEHHH----HHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hCeEEEEEcCHHH----HHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCEEEEEECcCcHHHHHHHHHHHHh
Confidence 6899999999999 9999999999999999999999999999999999999999999999999999999 8999
Q ss_pred ccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcCCcccccccceeeeC
Q psy14235 537 LGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHPDMRLSKQGVVYFVG 601 (645)
Q Consensus 537 ge~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~~~~~~~~~~~y~~~ 601 (645)
||+|+ .+++|||||+|+|++ +++|+|||+++++++.. .|++++|++|+- .....|.+|
T Consensus 103 Ge~f~-~~d~IcGvvvsvR~~--~~~IsIW~~~~~~~~~~~~I~~~~k~~L~l----~~~~~y~~H 161 (177)
T 2idr_A 103 GEQFD-FGDEICGAVVSVRQK--QERVAIWTKNAANEAAQISIGKQWKEFLDY----KDSIGFIVH 161 (177)
T ss_dssp TTCST-TGGGEEEEEEEECSS--CEEEEEEESCTTCHHHHHHHHHHHHHHHTC----CSCCEEEEG
T ss_pred cCcCC-CCCceEEEEEEEecC--CcEEEEEcCCCCCHHHHHHHHHHHHHHhCC----CCeEEEEEc
Confidence 99996 467999999999999 89999999999876654 688889999853 334555555
No 19
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Probab=100.00 E-value=1.1e-38 Score=313.57 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=119.0
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCCCc----ccch----
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFS----ICIS---- 532 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~~~----~~~W---- 532 (645)
++++|++|+|||+ ||++||||++||+|+.++||||||+||+||||||+|++||||+|+++|... |++|
T Consensus 32 ~l~~i~tf~TVE~----FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~GG~w~i~~~k~~~~~~~d~~W~~ll 107 (190)
T 1l8b_A 32 NLRLISKFDTVED----FWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETL 107 (190)
T ss_dssp GEEEEEEEEEHHH----HHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEEEEEEEEGGGTTTTHHHHHHHHH
T ss_pred hceEEEEEecHHH----HHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCCCCEEEEEecCccCcchHHHHHHHHH
Confidence 6899999999999 999999999999999999999999999999999999999999999998765 9999
Q ss_pred hhhcccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcCCcccccccceeeeCc
Q psy14235 533 LTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHPDMRLSKQGVVYFVGN 602 (645)
Q Consensus 533 l~~ige~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~~~~~~~~~~~y~~~~ 602 (645)
|++|||+|++.+++|||||+|+|++ +++|+|||+++++.+.. .|++++|++|. +. ....+.|.+|.
T Consensus 108 l~~IGe~f~~~~d~IcGvvvsvR~~--~~~IsIW~~~~~~~~~~~~I~~~lk~~L~-l~-~~~~~~y~~H~ 174 (190)
T 1l8b_A 108 LCLIGESFDDYSDDVCGAVVNVRAK--GDKIAIWTTECENRDAVTHIGRVYKERLG-LP-PKIVIGYQSHA 174 (190)
T ss_dssp HHHHTTTTGGGGGGEEEEEEEECSS--EEEEEEEESCTTCHHHHHHHHHHHHHHHT-CC-TTSCCEEEEHH
T ss_pred HHHhhcccccCCCceeeEEEEeecC--CcEEEEEcCCCCCHHHHHHHHHHHHHHhC-CC-CCCeEEEEEcH
Confidence 8999999966678999999999999 89999999999876654 68888999985 11 23456677774
No 20
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*
Probab=100.00 E-value=2.4e-38 Score=310.58 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=119.7
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCCC----cccch----
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRF----SICIS---- 532 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~~----~~~~W---- 532 (645)
++++|++|+|||+ ||++||||++||+|+.++||||||+||+||||||+|++||||+|+++|.. .|++|
T Consensus 25 ~l~~i~tf~TVE~----FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~~~~~d~~W~~ll 100 (189)
T 3m94_A 25 CLKQVAVFDTVED----FWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELL 100 (189)
T ss_dssp GEEEEEEEEEHHH----HHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEEEEEEECTTTHHHHHHHHHHHHH
T ss_pred hceEEEEEecHHH----HHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCCEEEEEecCccccchHHHHHHHHH
Confidence 6899999999999 99999999999999999999999999999999999999999999998864 48999
Q ss_pred hhhcccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcCCcccccccceeeeCce
Q psy14235 533 LTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHPDMRLSKQGVVYFVGNN 603 (645)
Q Consensus 533 l~~ige~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~~~~~~~~~~~y~~~~~ 603 (645)
|++|||+|++.+++|||||||+|++ +++|+|||+++++.+.. .|++++|++|.- .....+.|.+|..
T Consensus 101 l~~IGe~f~~~~~~IcGvvvsvR~~--~~~IsIW~~~~~~~~~~~~Ig~~lk~~L~l--~~~~~i~y~~H~d 168 (189)
T 3m94_A 101 MAIIGEQFEDNGEYICGAVVNVRQK--GDKVSLWTRDSLKDDVNLRIGQILKAKLEI--PDTEPIRYEVHKD 168 (189)
T ss_dssp HHHHTTCSGGGGGGEEEEEEECCSS--CEEEEEEESCTTCHHHHHHHHHHHHHHHTC--CTTSCEEEEECC-
T ss_pred HHHhCCcccccCCcCceEEEEEecC--CcEEEEECCCCCCHHHHHHHHHHHHHHhCc--CCCCEEEEEEchH
Confidence 8999999976778999999999999 89999999999876654 688899999851 2334567777753
No 21
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Probab=100.00 E-value=4.7e-38 Score=310.33 Aligned_cols=120 Identities=20% Similarity=0.297 Sum_probs=112.9
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCCCcccch----hhhc
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICIS----LTHS 536 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~~~~~~W----l~~i 536 (645)
++++|++|+|||+ ||++||||++||+|+.++||||||+||+||||||+|++||||+|+++|...|++| |++|
T Consensus 42 ~l~~i~tf~TVE~----FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~d~~W~~llLa~I 117 (195)
T 2jgb_A 42 NIKQIGTFASVEQ----FWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAML 117 (195)
T ss_dssp HEEEEEEEEEHHH----HHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTTTTTCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred hceEEEEEecHHH----HHHHHhcCCChHHCCCCceEEEEeCCCcccccCCCCCCCcEEEEEeCcccHHHHHHHHHHHHh
Confidence 6899999999999 9999999999999999999999999999999999999999999999999999999 8999
Q ss_pred ccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcC
Q psy14235 537 LGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHP 587 (645)
Q Consensus 537 ge~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~ 587 (645)
||+|+ .+++|||||+|+|.+ +++|+|||+++++++.. +|++++|++|.
T Consensus 118 GE~f~-~~d~IcGvvvsvR~~--~~~IsIW~~~~~~~~~~~~I~~~lk~~L~ 166 (195)
T 2jgb_A 118 GEQFM-VGEEICGAVVSVRFQ--EDIISIWNKTASDQATTARIRDTLRRVLN 166 (195)
T ss_dssp TTCSC-CTTCEEEEEEEECSS--CEEEEEEESCTTCHHHHHHHHHHHHHHCC
T ss_pred cCCCC-CCCceeeeEEEEecC--CcEEEEEcCCCCCHHHHHHHHHHHHHHhC
Confidence 99995 578999999999999 89999999999876554 68888999985
No 22
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*
Probab=100.00 E-value=3.1e-38 Score=316.06 Aligned_cols=135 Identities=18% Similarity=0.188 Sum_probs=119.4
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCCCc----ccch----
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFS----ICIS---- 532 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~~~----~~~W---- 532 (645)
++++|++|+|||+ ||++||||++||+|+.++||||||+||+||||||+|++||||+|+++|... |++|
T Consensus 59 ~l~~I~tf~TVE~----FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~GGkw~i~~~k~~~~~~ld~~W~~ll 134 (217)
T 1ipb_A 59 NLRLISKFDTVED----FWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETL 134 (217)
T ss_dssp GEEEEEEEEEHHH----HHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEEEEEECCTTHHHHTHHHHHHHHH
T ss_pred hceEEEEEccHHH----HHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCCCCEEEEEeccccCcchHHHHHHHHH
Confidence 6899999999999 999999999999999999999999999999999999999999999998765 9999
Q ss_pred hhhcccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcCCcccccccceeeeCce
Q psy14235 533 LTHSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHPDMRLSKQGVVYFVGNN 603 (645)
Q Consensus 533 l~~ige~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~~~~~~~~~~~y~~~~~ 603 (645)
|++|||+|++++++|||||+|+|++ +++|+|||+++++.+.. .|++++|++|. +. .+..+.|.+|..
T Consensus 135 La~IGE~f~~~~d~IcGvvvsvR~~--~~~IsIW~~~~~~~~~~~~I~~~lk~~L~-l~-~~~~i~y~~H~d 202 (217)
T 1ipb_A 135 LCLIGESFDDYSDDVCGAVVNVRAK--GDKIAIWTTECENREAVTHIGRVYKERLG-LP-PKIVIGYQSHAD 202 (217)
T ss_dssp HHHHTTTTGGGGGGEEEEEEECCTT--CCEEEEEESCTTCHHHHHHHHHHHHHHHT-CC-TTCCCEEEEGGG
T ss_pred HHHhhccccccCCccceEEEEeecC--CcEEEEECCCCCCHHHHHHHHHHHHHHhC-CC-CCCeEEEEEchH
Confidence 8999999965678999999999999 89999999999876654 58888999985 21 224566777743
No 23
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Probab=100.00 E-value=1.9e-37 Score=309.33 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=114.0
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEec-C-CCcccch----hh
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCS-K-RFSICIS----LT 534 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~-k-~~~~~~W----l~ 534 (645)
++++|++|+|||+ ||++||||++||+|+.++||||||+||+||||||+|++||||+|+++ | ...|++| |+
T Consensus 61 ~l~~I~tf~TVE~----FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~GGkw~i~~~~k~~~~d~~W~~llLa 136 (213)
T 1ap8_A 61 LLRPVTSFQTVEE----FWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLA 136 (213)
T ss_dssp HCEEEEEEEESHH----HHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTTTSEEEEEEECSCCSSSHHHHHHHHHH
T ss_pred hceEEEEEccHHH----HHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCCCCCEEEEEECCCcchHHHHHHHHHHH
Confidence 6899999999999 99999999999999999999999999999999999999999999984 2 3679999 89
Q ss_pred hcccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCc-chhhHHHHhhcCCcccccccceeeeC
Q psy14235 535 HSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQ-SGLFVTRKSLHPDMRLSKQGVVYFVG 601 (645)
Q Consensus 535 ~ige~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~-~~i~~~~k~~l~~~~~~~~~~~y~~~ 601 (645)
+|||+|++..++|||||+|+|++ +++|+|||+++ +++. ..|++++|++|+.- ......|.+|
T Consensus 137 ~IGE~f~~~~deIcGvvvsvR~~--~~~IsIW~~~~-~~~~~~~Ig~~lk~~L~l~--~~~~i~y~~H 199 (213)
T 1ap8_A 137 VIGETIDEDDSQINGVVLSIRKG--GNKFALWTKSE-DKEPLLRIGGKFKQVLKLT--DDGHLEFFPH 199 (213)
T ss_dssp HTSTTTCSSTTTEEEEEEECCTT--CEEEEEEESSS-CHHHHHHHHHHHHHHTTCC--SSCCCEEECG
T ss_pred HhcCcccCCCCcEeEEEEEeecC--CcEEEEEcCCC-CHHHHHHHHHHHHHHhCCC--CCCeEEEEEc
Confidence 99999986555899999999999 89999999999 4433 46889999997421 2234555555
No 24
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*
Probab=100.00 E-value=8.4e-38 Score=306.83 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=112.6
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCC-Ccccch----hhh
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKR-FSICIS----LTH 535 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~-~~~~~W----l~~ 535 (645)
++++|++|+|||+ ||++||||++||+|+.++||||||+||+||||||+|++||||+|+++|. ..|++| |++
T Consensus 32 ~l~~i~~f~TVE~----FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~~GGkw~i~~~k~~~~d~~W~~lll~~ 107 (189)
T 3hxi_A 32 CLEKVATFSTIED----FWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLL 107 (189)
T ss_dssp GEEEEEEEEEHHH----HHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHHTCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hceEEEEEeeHHH----HHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCCCCcEEEEEecCCCcHHHHHHHHHHHH
Confidence 6899999999999 9999999999999999999999999999999999999999999999998 479999 899
Q ss_pred cccccCCCCCC--ceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcC
Q psy14235 536 SLGQITPTPKP--QSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHP 587 (645)
Q Consensus 536 ige~~~~~~~~--I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~ 587 (645)
|||+|++.+++ |||||+|+|++ +++|+|||+++++.+.. +|++++|++|.
T Consensus 108 IGe~f~~~~~~~~IcGvvvsvR~~--~~~IsIW~~~~~~~~~~~~I~~~~k~~L~ 160 (189)
T 3hxi_A 108 IGSDWDTDEEDRQICGAVFQPRSR--GSKLSVWLTSDNEEETILSIGRRIKERLE 160 (189)
T ss_dssp HTTCCSSHHHHHHEEEEEEECCTT--CCEEEEEESCSCCHHHHHHHHHHHHHHHT
T ss_pred hcCcccccCCCceeeeEEEEeccC--CcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 99999655667 99999999999 89999999999876654 68889999984
No 25
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}
Probab=100.00 E-value=5.5e-35 Score=297.87 Aligned_cols=133 Identities=16% Similarity=0.226 Sum_probs=115.8
Q ss_pred ccceeeeecccccccccccccccCCcCCCCCCCCceeeeeccCCCcCCcccccCCCcEEEEEecCCCc---ccch----h
Q psy14235 461 SKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFS---ICIS----L 533 (645)
Q Consensus 461 nlk~i~~f~tVE~~~~~Fw~~yn~i~~ps~l~~~~~y~lFk~gi~P~WED~~N~~GG~w~i~~~k~~~---~~~W----l 533 (645)
++++|++|+|||+ ||++||||++|++|+.+++|||||+||+||||||+|++||+|+|+++|... |++| |
T Consensus 92 ~l~~I~~f~TVE~----FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~~GG~w~~~~~k~~~~~~d~~W~~lll 167 (248)
T 4axg_A 92 MQNEITSFDTVED----FWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLL 167 (248)
T ss_dssp CEEEEEEEEEHHH----HHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTTTCEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred hCeEEEEEcCHHH----HHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCCCccEEEEEecccchhHHHHHHHHHHH
Confidence 5789999999999 999999999999999999999999999999999999999999999988653 7899 8
Q ss_pred hhcccccCCCCCCceeEEEEEEecccccEEEEeccCCCCCCcc-hhhHHHHhhcCCcccccccceeeeCc
Q psy14235 534 THSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQS-GLFVTRKSLHPDMRLSKQGVVYFVGN 602 (645)
Q Consensus 534 ~~ige~~~~~~~~I~G~vvsvR~~~~~~~isiW~~~~~~~~~~-~i~~~~k~~l~~~~~~~~~~~y~~~~ 602 (645)
++|||+|+ .+++|||||+|+|++ +++|+||++++++++.. +|++++|++|.- .....+.|.+|.
T Consensus 168 ~~IGe~~~-~~~~I~Gi~is~R~~--~~~I~IW~~~~~~~~~~~~I~~~lk~~L~l--~~~~~i~yk~H~ 232 (248)
T 4axg_A 168 CLIGEAFD-HSDQICGAVINIRGK--SNKISIWTADGNNEEAALEIGHKLRDALRL--GRNNSLQYQLHK 232 (248)
T ss_dssp HHHTTCSS-CGGGEEEEEEEECSS--EEEEEEEESCTTCHHHHHHHHHHHHHHTTC--CTTSCEEEEETG
T ss_pred HHHhCcCC-CCCceeceEEEecCC--CCEEEEeCCCCcCHHHHHHHHHHHHHHhCC--CCCCeEEEeehh
Confidence 99999995 467899999999999 89999999999887654 688889999842 122334555554
No 26
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A
Probab=98.22 E-value=2.7e-07 Score=93.25 Aligned_cols=68 Identities=6% Similarity=-0.194 Sum_probs=56.0
Q ss_pred cccCCCcEEEEEecC-CCcccch----hhhcccccCCCCCCceeEEEEEEec-ccccEEEEeccCCCCCCcc-hhhHHHH
Q psy14235 511 PYNQKGGTWRIKCSK-RFSICIS----LTHSLGQITPTPKPQSGLSVYVVLT-LFVMMLRAWQIAPTPKPQS-GLFVTRK 583 (645)
Q Consensus 511 ~~N~~GG~w~i~~~k-~~~~~~W----l~~ige~~~~~~~~I~G~vvsvR~~-~~~~~isiW~~~~~~~~~~-~i~~~~k 583 (645)
+.|+.||||.|.++| ...|++| +++|. +++||++||+|.+ .-+++|+|||+|..+.+.+ +|++++|
T Consensus 121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~-------g~L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~RV~~~Lr 193 (251)
T 1ztp_A 121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVE-------GRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIR 193 (251)
T ss_dssp HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHH-------TSCSEEEECCBCSSSCCEEEEEEESCTTCHHHHHHHHHHHH
T ss_pred HcCCCCceEEEecChHHHHHHHHHHHHHHHHh-------CceeEEEEecCCCCCCCCEEEEECCCcCCHHHHHHHHHHHH
Confidence 679999999999998 6789999 55663 3469999999985 2268999999999987665 6888888
Q ss_pred hh
Q psy14235 584 SL 585 (645)
Q Consensus 584 ~~ 585 (645)
++
T Consensus 194 eL 195 (251)
T 1ztp_A 194 AA 195 (251)
T ss_dssp HT
T ss_pred Hc
Confidence 83
No 27
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=35.47 E-value=16 Score=33.91 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.8
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14235 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (645)
Q Consensus 90 i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LL 122 (645)
..|||++++||.+. +.||++-|+
T Consensus 15 FtyrG~~ld~Ll~m----------s~e~l~~L~ 37 (142)
T 3u5c_P 15 HSYRGVDLEKLLEM----------STEDFVKLA 37 (142)
T ss_dssp CBSSSCBHHHHHTT----------CHHHHHHHS
T ss_pred EEEccccHHHHHcC----------CHHHHHHHh
Confidence 48999999999985 678988776
No 28
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=33.36 E-value=89 Score=33.26 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=46.8
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~--lp~~--v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-+|-+.++++|+|+.|++.+.+.|...|.-+.. +... ...+..+ ..++|-..+.+++++|.
T Consensus 153 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe~n~St~tarvvaS--t~ad~ysavaagi~aL~ 217 (375)
T 3tqg_A 153 LTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNASTFAARVCSA--TLSDIYSAVTAAIATLR 217 (375)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHhcc
Confidence 578899999999999999999999998765542 4443 3345554 34689999999999984
No 29
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.25 E-value=15 Score=33.65 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.6
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14235 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (645)
Q Consensus 90 i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LL 122 (645)
..|||++++||.+. +.||++-|+
T Consensus 6 ftyrG~~ld~L~~m----------s~~~l~~L~ 28 (132)
T 3j20_T 6 FRYRGYTLEQLMNM----------SLEELARLF 28 (132)
T ss_dssp CCSSSSCHHHHHHH----------HHHHHHHHS
T ss_pred EEEcCCcHHHHHcC----------CHHHHHHHh
Confidence 47999999999986 578888776
No 30
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=30.10 E-value=49 Score=34.19 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHhcCCcccccCCCCCCCCCc-cHHHHHHHHHhh
Q psy14235 323 SEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDP-RYTCQREFAQKH 366 (645)
Q Consensus 323 s~~~i~~~v~~~l~~g~~IpGFGH~Vyk~~DP-Ra~~L~~~a~~~ 366 (645)
+++++++.+++.++.|+-|.+-||-+...++| ..+++.+.+++.
T Consensus 302 ~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey 346 (348)
T 4ay7_A 302 PVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEF 346 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHh
Confidence 56889999999999999999999999998888 566677766654
No 31
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=29.56 E-value=19 Score=33.45 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=20.0
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14235 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (645)
Q Consensus 90 i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LL 122 (645)
-.|||++++||.+..- ...+.....||++-|+
T Consensus 11 ftyrG~~l~~L~~~~~-~~~~~~m~~~~~~~l~ 42 (144)
T 2xzm_S 11 FTFRGKGLEELTALAS-GSNSEKLISDELAALF 42 (144)
T ss_dssp CCCCTTCHHHHHHHHS-STTCCSSSCHHHHHHS
T ss_pred eeecCCcHHHHHhhhc-ccccccCCHHHHHHHh
Confidence 4899999999998310 0011223557777665
No 32
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=27.93 E-value=1.2e+02 Score=32.09 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhh
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITAL 174 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL 174 (645)
-+|-+.++++++|+.|++.+.+.|...|.-+. .+..... .++.+ ..++|-..+.+++++|
T Consensus 153 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL 216 (378)
T 1a59_A 153 LDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITS--TLADLHSAVTGAIGAL 216 (378)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHc
Confidence 46778999999999999999999998876554 2444333 44444 3478999999999999
No 33
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=27.70 E-value=1.3e+02 Score=31.97 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=45.6
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++++|+|+.|++.+.+.|...|.-+. .+..... .++.+ ..++|-..+.+++++|.
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 214 (371)
T 1aj8_A 150 LSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGS--TLSDYYSAILAGIGALK 214 (371)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHcC
Confidence 46778999999999999999999998876554 2444333 34443 34789999999999983
No 34
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=27.28 E-value=1.3e+02 Score=31.96 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++++++|+.|++.+.+.|...|.-+. .+..... .++.+ ..++|-..+.+++++|.
T Consensus 151 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (377)
T 1iom_A 151 LSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFS--TETDLYSAITAAVASLK 215 (377)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHcc
Confidence 46778899999999999999999998876554 2444333 44444 34789999999999993
No 35
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=26.80 E-value=1.5e+02 Score=31.55 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=45.9
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++++|+|+.|++.+.+.|...|.-+. .+..... .++.+ ..++|-..+.+++++|.
T Consensus 155 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 219 (385)
T 2ifc_A 155 DSYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVS--TLSDMYSGITAALAALK 219 (385)
T ss_dssp SCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCCccHHHHHHHHHHh--cCCcHHHHHHHHHHHcc
Confidence 46788999999999999999999998886554 2444333 34443 34689999999999984
No 36
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=26.13 E-value=1.4e+02 Score=31.65 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++++|+|+.|++.+.+.|...|.-+. .+..... .++.+ ..++|-..+.+++++|.
T Consensus 147 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~aL~ 211 (373)
T 1vgp_A 147 LSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNASTFASLVVAS--TFSDLYSSIVAGISALK 211 (373)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCccHHHHHHHHHHhcC
Confidence 46778889999999999999999998886554 2444333 44444 34789999999999993
No 37
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=26.12 E-value=1.4e+02 Score=32.11 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=45.7
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++++|+|+.|++.+.+.|...|.-+. .+..... .++.+ ..++|-..+.+++++|.
T Consensus 181 ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg~naST~aaRv~aS--t~ad~~savaagi~aL~ 245 (409)
T 2ibp_A 181 LGHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPASTFAAHVVAS--TLSDLYSSVAAAIAALK 245 (409)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHcc
Confidence 46778899999999999999999999886554 2444333 34443 34788899999999984
No 38
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=25.19 E-value=1.7e+02 Score=31.05 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=45.8
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~~v~--~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++++++|+.|++.+.+.|...|.-+. .+..... .++.+ ..++|-..+.+++++|.
T Consensus 151 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (378)
T 1vgm_A 151 ESYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPASTTAALVASS--TLSDMYSCIVAALAALK 215 (378)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 46778899999999999999999999886554 2444333 34443 34688999999999984
No 39
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=25.14 E-value=1.6e+02 Score=31.60 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=46.3
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCH--HHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++.+++|+.|++++.+.|...|.-+. .+.. ....++.+- .++|-..+.+++++|.
T Consensus 182 ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~N~St~taRvvaSt--~ad~ysavaagi~aL~ 246 (404)
T 3o8j_A 182 DSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGT--GSDVYSAIIGAIGALR 246 (404)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSSHHHHHHHHHHTT--TCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHhc--CCCHHHHHHHHHHHcc
Confidence 57778899999999999999999999876554 2344 333455543 4679999999999984
No 40
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=22.53 E-value=1.8e+02 Score=31.39 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=45.9
Q ss_pred CCHHHHHHHHhhCCCCCHHHHHHHHHHHHhhc--CCCH--HHHHHHhcCCCCCChhHHHHHHHHhhc
Q psy14235 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (645)
Q Consensus 113 ~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsaL~ 175 (645)
-++-+.++++|+|+.|++.+.+.|...|.-+. .+.. ....++.+ ..++|-..+.+++++|.
T Consensus 195 ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~NaST~taRvvaS--t~ad~ysavaagi~aL~ 259 (414)
T 3hwk_A 195 LGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTS--TQSDIYSAVTGAIGALK 259 (414)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHh--cCCCHHHHHHHHHHHhc
Confidence 46778899999999999999999999876543 2444 33345544 34679999999999984
No 41
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=22.09 E-value=19 Score=33.78 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=0.0
Q ss_pred eeecCCCHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14235 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (645)
Q Consensus 90 i~YRGy~I~eLa~~~p~~~~~~~~~fEev~~LL 122 (645)
..|||++++||.+. +.||++-|+
T Consensus 24 FtYrG~~ld~Ll~m----------s~eel~~L~ 46 (154)
T 3iz6_R 24 YSYRGVDLDALLDM----------STDDLVQLF 46 (154)
T ss_dssp ---------------------------------
T ss_pred EEEecCcHHHHHhC----------CHHHHHHHc
Confidence 48999999999985 567877666
Done!