RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14235
(645 letters)
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 719 bits (1858), Expect = 0.0
Identities = 327/432 (75%), Positives = 376/432 (87%)
Query: 29 STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1 STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60
Query: 89 GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+ QV +SK WA RA LPS
Sbjct: 61 GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120
Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKL 208
HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKL
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKL 180
Query: 209 PVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGN 268
P VAA IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGN
Sbjct: 181 PCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGN 240
Query: 269 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLK 328
VSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+
Sbjct: 241 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLR 300
Query: 329 EFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLI 388
++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+
Sbjct: 301 DYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLL 360
Query: 389 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERP 448
E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERP
Sbjct: 361 EQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 420
Query: 449 KSLSTNDLVKQY 460
KS+ST L K
Sbjct: 421 KSMSTAGLEKLS 432
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 177 bits (452), Expect = 3e-50
Identities = 80/367 (21%), Positives = 152/367 (41%), Gaps = 42/367 (11%)
Query: 70 GMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD 126
G++GI ETS+ +D E+G +RG + + EE +L++ G
Sbjct: 4 GLKGI--TCVETSISHIDGEKGRLIYRGHHAKD----IALNHSFEE-----AAYLILFGK 52
Query: 127 VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYND 186
+PS ++Q A+ LP H+ ++ + PN++ MS ++AL
Sbjct: 53 LPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALGEN------TYT 106
Query: 187 GVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD 246
+ E+++ LIA P + A R + G+ A + N+ ML
Sbjct: 107 -------FHPKTEEAIRLIAITPSIIAYRKR--WTRGEQAIAPSSQYGHVENYYYML-TG 156
Query: 247 ---NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303
+ + + Y+ + ++H N S + + S SD + A + + GPLHG A
Sbjct: 157 EQPSEAKKKALETYMILATEHGM-NASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGA 215
Query: 304 NQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFA 363
V K+ + +G +E + ++ L+ G+ + G+GH V + DPR R+ A
Sbjct: 216 PSAVT----KMLEDIG---EKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKA 268
Query: 364 QKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLF 423
++ +D L V +L + + NV+ ++ +++ + +T F
Sbjct: 269 EEVAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAAVMRAIDF-DDELFTPTF 327
Query: 424 GVSRALG 430
SR +G
Sbjct: 328 SASRMVG 334
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 175 bits (446), Expect = 3e-49
Identities = 102/369 (27%), Positives = 169/369 (45%), Gaps = 43/369 (11%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
KGL + +T++ +D +EG +RG S+ E L + EE + +LL G +
Sbjct: 3 KGLEDVYIDQTNICYIDGKEGKLYYRGYSVEE----LAELSTFEE-----VVYLLWWGKL 53
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG 187
PS ++++ K A LP V+ ++ P + HPM I+ L +
Sbjct: 54 PSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTP 113
Query: 188 VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD- 246
E VY + + AK+P + A YR + G +ANF ML
Sbjct: 114 -------EEVYRIGISVTAKIPTIVANWYR--IKNGLEYVPPKEKLSHAANFLYML-HGE 163
Query: 247 --NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304
++ + M + L ++++HE N S V VGS LSD Y + AG+ L GP+HG A
Sbjct: 164 EPPKEWEKAMDVALILYAEHEI-NASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAV 222
Query: 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQ 364
+E + K ++G S EK++E+ + L+ + + G GH V + DPR +++A
Sbjct: 223 EEAI----KQFMEIG---SPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYAS 275
Query: 365 KHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFG 424
K L D LF++ ++ ++V L + K NVD SG++ + + YT +F
Sbjct: 276 K-LGDKKLFEIAERLERLVEEYLSK----KGISINVDYWSGLVFYGMKI-PIELYTTIFA 329
Query: 425 VSRALGVLA 433
+ R G A
Sbjct: 330 MGRIAGWTA 338
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 176 bits (449), Expect = 4e-49
Identities = 122/469 (26%), Positives = 191/469 (40%), Gaps = 84/469 (17%)
Query: 25 ATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLV----CE 80
AT + A + + V + RK G T D G C
Sbjct: 13 ATISVDGKSAEMPVLSGTLGPDVIDIRKLPAQL--GVFTFD---------PGYGETAACN 61
Query: 81 TSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPE-GLF----WLLVTGDVPSEAQ 132
+ + +D ++G+ RG I L E + +LL+ G++P++AQ
Sbjct: 62 SKITFIDGDKGVLLHRGYPI--------------AQLAENASYEEVIYLLLNGELPNKAQ 107
Query: 133 VQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSK 192
+ + + L + N F HPM+ + AL S F Y D +
Sbjct: 108 YDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGAL---SAF---YPDANDIAI 161
Query: 193 YWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD------ 246
+M LIAK+P +AA Y+ T G+ + +++ NF SM+ F
Sbjct: 162 -PANRDLAAMRLIAKIPTIAAWAYKYTQ--GEAFIYPRNDLNYAENFLSMM-FARMSEPY 217
Query: 247 --NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304
N M L +H+DHE N S TV L GS ++P+ AAG+ L GP HG AN
Sbjct: 218 KVNPVLARAMNRILILHADHEQ-NASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGAN 276
Query: 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTL--KSGQVVPGYGHAVLRKTDPR-----YT 357
+ VL L ++ +E + FI SG + G+GH V + DPR T
Sbjct: 277 EAVLKMLARIG-------KKENIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQT 329
Query: 358 CQREFAQKHLPDDSLFKLVSQVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGL-K 414
C + + DD L L ++ K+ ++ + +PNVD +SG++L+ G+
Sbjct: 330 CHEVLTELGIKDDPLLDLAVELEKIALSDDYFVQ----RKLYPNVDFYSGIILKAMGIPT 385
Query: 415 EMNYYTVLFGVSRALGVLASLIWDRALGLP---IERPKSLSTNDLVKQY 460
M +TVLF V+R G ++ W + P I RP+ L + Y
Sbjct: 386 SM--FTVLFAVARTTGWVSQ--WKEMIEEPGQRISRPRQLYIGAPQRDY 430
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
in RSGI, structural genomics, lyase; 1.50A {Thermus
thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 175 bits (445), Expect = 4e-49
Identities = 96/390 (24%), Positives = 169/390 (43%), Gaps = 46/390 (11%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
+GL E+ + +D ++G + G+ I E L + EE +LL+ G +
Sbjct: 5 RGLEGVLFTESRMCYIDGQQGKLYYYGIPIQE----LAEKSSFEE-----TTFLLLHGRL 55
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG 187
P +++ S + A R LP+H++ +P HPMS A++
Sbjct: 56 PRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEF---GML---DPTE 109
Query: 188 VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD- 246
S+ E +YE +DLIAK + A R + GK + +ANF M
Sbjct: 110 GDISR--EALYEKGLDLIAKFATIVAANKR--LKEGKEPIPPREDLSHAANFLYMA-NGV 164
Query: 247 --NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304
+ + LM L +H++H N S T S +D Y + A + L GP HG AN
Sbjct: 165 EPSPEQARLMDAALILHAEHGF-NASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGAN 223
Query: 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQ 364
+ V+ ++ Q++G + E+ +E++ L + + G GH V + DPR + A+
Sbjct: 224 EAVM----RMIQEIG---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLAR 276
Query: 365 K---HLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTV 421
++++ V + VL + +PNVD +SGV+ G + ++T
Sbjct: 277 LVAEKHGHSKEYQILKIVEEEAGKVLNP----RGIYPNVDFYSGVVYSDLGF-SLEFFTP 331
Query: 422 LFGVSRALGVLASLIWDRALGLPIERPKSL 451
+F V+R G + ++ + L + RP +
Sbjct: 332 IFAVARISGWVGHILEYQELDNRLLRPGAK 361
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 174 bits (444), Expect = 1e-48
Identities = 99/409 (24%), Positives = 175/409 (42%), Gaps = 67/409 (16%)
Query: 78 VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPE-GLF----WLLVTGDVPS 129
CE+ + +D +G+ RG I E + + + L+ G++P+
Sbjct: 60 ACESKITYIDGGKGVLLHRGYPI--------------EEWTQKSNYRTLCYALIYGELPT 105
Query: 130 EAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH 189
+ QV++ + ++ + HV + P H HPMS A + L + +
Sbjct: 106 DEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVL---AAE---HIHNGQ 159
Query: 190 KSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQ 249
K E E + +++AK+ +AA YR+ GK ++ NF M+ D+
Sbjct: 160 K----ESQDEVAKNIVAKIATIAAMAYRHNH--GKKFLEPKMEYGYAENFLYMMFADDES 213
Query: 250 F------TELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303
+ + M +H+DHE N S TV L GS + PY + AG+ L GP HG A
Sbjct: 214 YKPDELHIKAMDTIFMLHADHEQ-NASTSTVRLSGSTGNSPYAAIIAGITALWGPAHGGA 272
Query: 304 NQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTL--KSGQVVPGYGHAVLRKTDPR-----Y 356
N+ VL L ++ S E + ++I + G+GH V + TDPR
Sbjct: 273 NEAVLKMLSEIG-------STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKK 325
Query: 357 TCQREFAQKHLPDDSLFKLVSQVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLK 414
C+ A+ D+ L + ++ ++ IE + + NVD +SG++L+ G+
Sbjct: 326 NCEEILAKLGHSDNPLLTVAKKLEEIALQDEFFIE----RKLFSNVDFYSGIILKAMGI- 380
Query: 415 EMNYYTVLFGVSRALGVLASLIWDRALGLP---IERPKSLSTNDLVKQY 460
+ +T +F ++R G ++ W + P I RP+ L T + +
Sbjct: 381 PEDMFTAIFALARTSGWISQ--WIEMVNDPAQKIGRPRQLYTGATNRNF 427
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 174 bits (443), Expect = 1e-48
Identities = 81/399 (20%), Positives = 158/399 (39%), Gaps = 51/399 (12%)
Query: 45 ERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQ 101
+ + +T V + + G+ T++ + +RG I +
Sbjct: 14 SHMTDTTILQNNTHVIKPKKS---VALSGV--PAGNTALCTVGKSGNDLHYRGYDILD-- 66
Query: 102 KVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHL 161
L + EE + LL+ G +P+ ++ A + LP++V T+L P
Sbjct: 67 --LAEHCEFEE-----VAHLLIHGKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAAS 119
Query: 162 HPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQ 221
HPM ++AL + + + + L+A L + Y +
Sbjct: 120 HPMDVMRTGVSALGCTLPEKEGHTV--------SGARDIADKLLASLSSILLYWYHYS-H 170
Query: 222 GGKGIGAIDTNKD-WSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNVSAHTVHLV 277
G+ I +T+ D +F +L + + M + L ++++HE N S T ++
Sbjct: 171 NGERI-QPETDDDSIGGHFLHLL-HGEKPTQSWEKAMHISLVLYAEHEF-NASTFTSRVI 227
Query: 278 GSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKS 337
SD Y + + L GP HG AN+ L ++QQ+ + ++ + I +++
Sbjct: 228 AGTGSDVYSAIIGAIGALRGPKHGGANEVSL----EIQQRYE---TPDEAEADIRKRVEN 280
Query: 338 GQVVPGYGHAVLRKTDPRYTCQREFAQK---HLPDDSLFKLVSQVYKVVPPVLIETGKVK 394
+VV G+GH V DPR+ + A++ ++ + ++ V+ + K
Sbjct: 281 KEVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRLETVM-------WETK 333
Query: 395 NPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 433
+PN+D S V G+ +T LF ++R G A
Sbjct: 334 KMFPNLDWFSAVSYNMMGV-PTEMFTPLFVIARVTGWAA 371
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 173 bits (441), Expect = 1e-48
Identities = 86/391 (21%), Positives = 158/391 (40%), Gaps = 48/391 (12%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
KGL + T++ +D E+GI R+RG +I + L EE +L++ G +
Sbjct: 6 KGLENVIIKVTNLTFIDGEKGILRYRGYNIED----LVNYGSYEE-----TIYLMLYGKL 56
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG 187
P++ ++ L E+P V+ + P + AL + K +
Sbjct: 57 PTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAAL---ASIDKNFKWK 113
Query: 188 VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSML-GFD 246
E E ++ +IAK+ + A +YR + G + + ++ +F +
Sbjct: 114 -------ENDKEKAISIIAKMATLVANVYR--RKEGNKPRIPEPSDSFAKSFLLASFARE 164
Query: 247 NHQF-TELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 305
M L +++DHE S + S LSD Y S A + L GPLHG A +
Sbjct: 165 PTTDEINAMDKALILYTDHEV-PASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAE 223
Query: 306 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLK-SGQVVPGYGHAVLRKTDPRYTCQREFAQ 364
E ++ +++ + + + + G+GH V + DPR ++ A
Sbjct: 224 EAFKQFIEIG-------DPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLAL 276
Query: 365 KHL----PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYT 420
+ F++ ++ ++ K +PN D +SG++ G + +T
Sbjct: 277 TLIERNADARRYFEIAQKLEELGIKQFSS----KGIYPNTDFYSGIVFYALGF-PVYMFT 331
Query: 421 VLFGVSRALGVLASLIWDRALGLPIERPKSL 451
LF +SR LG LA +I + RP++L
Sbjct: 332 ALFALSRTLGWLAHIIEYVEEQHRLIRPRAL 362
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
national project O structural and functional analyses;
HET: FLC; 1.90A {Thermotoga maritima}
Length = 367
Score = 172 bits (439), Expect = 2e-48
Identities = 93/371 (25%), Positives = 172/371 (46%), Gaps = 43/371 (11%)
Query: 66 MMYGGMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122
M+ G+ G+ +CE+S+ LD G +RG+ + E L + EE + L
Sbjct: 1 MIQKGLEGV--KICESSICYLDGINGRLYYRGIPVEE----LAEKSTFEE-----TAYFL 49
Query: 123 VTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAK 182
G +P++++++ + A ELP+ + +L + P +LH + ++ S
Sbjct: 50 WYGKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYIDVLKIFLSIHGSMDGND- 108
Query: 183 AYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSM 242
E + E ++ + + P + A YR + GK + + NF M
Sbjct: 109 ------------EDLREKAIRVASVFPTILAYYYR--YSKGKELIRPRKDLSHVENFYYM 154
Query: 243 LGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGL 302
+ + ++ L+ + + + N S ++ S LSD Y + L GPLHG
Sbjct: 155 MFGERNEKIRLLESAFILLMEQDI-NASTFAALVIASTLSDLYSCIVGALGALKGPLHGG 213
Query: 303 ANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREF 362
A+++V + +++G SE++++EF+ LK + + G+GH V + DPR +
Sbjct: 214 ASEKVP----PMLEEIG---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRV 266
Query: 363 AQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVL 422
Q+H PD LF++ S++ + + + K+KN +PNVD +S VL + G N +T L
Sbjct: 267 LQEHFPDSKLFRIASKLEEYI-----VSNKIKNIYPNVDLYSSVLFEELGF-PRNMFTAL 320
Query: 423 FGVSRALGVLA 433
F +R +G A
Sbjct: 321 FATARVVGWTA 331
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 171 bits (437), Expect = 5e-48
Identities = 100/374 (26%), Positives = 161/374 (43%), Gaps = 52/374 (13%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
KGL V ET + +D E G +RG SI + L + EE + +L++ G +
Sbjct: 5 KGLEDVYVKETEITYIDGELGRLYYRGYSIYD----LAEFSNFEE-----VSYLILYGKL 55
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG 187
P+ ++ + LP ++ L PM A++ L E
Sbjct: 56 PNREELNWFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLLGIEDSKND----- 110
Query: 188 VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD- 246
E + LI+K P + A R + G I D S NF ML +
Sbjct: 111 -------ERTDIKGIKLISKFPTIVANYAR--LRKGLDIIEPDPKLSHSENFLYML-YGD 160
Query: 247 --NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304
N ++ M + L +H DHE N S +V S SD Y S AG++ L GPLHG AN
Sbjct: 161 RPNEIKSKAMDVTLILHIDHEM-NASTFASLVVASTFSDLYSSIVAGISALKGPLHGGAN 219
Query: 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPR-----YTCQ 359
E L K+ +++G S EK+ ++I N L + Q + G+GH V + DPR +
Sbjct: 220 YEAL----KMFKEIG---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYAK 272
Query: 360 REFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYY 419
++ +L+++ +V ++ L K +PNVD S ++ G E +++
Sbjct: 273 LLAEKEGGEIYTLYQIAEKVEEIGIKYLGP----KGIYPNVDFFSSIVFYSLGF-EPDFF 327
Query: 420 TVLFGVSRALGVLA 433
+F +R +G +A
Sbjct: 328 PAVFASARVVGWVA 341
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 172 bits (438), Expect = 8e-48
Identities = 109/392 (27%), Positives = 181/392 (46%), Gaps = 44/392 (11%)
Query: 60 GEVTVDMMYGGMRGIKG-LVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLP 115
G++ + G++ L+ TS+ +D E+GI +RG I E L + EE
Sbjct: 12 GKILQSPCGPIIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEE----LARLSTYEE--- 64
Query: 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALN 175
+ +L++ G +P++ +++ EL V ++ N HPM AA+ A
Sbjct: 65 --VSYLILYGRLPTKRELEDYINRMKKYRELHPATVEVIRNLAK-AHPMFALEAAVAAEG 121
Query: 176 S----ESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDT 231
+ K +A + G +K++ E Y + L+AK+P + A YR F G +
Sbjct: 122 AYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAKMPTIVAYHYR--FSRGLEVVRPRD 179
Query: 232 NKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSF 288
+ +ANF M+ F + + + LYL +H+DHE S H+V S LSD Y S
Sbjct: 180 DLGHAANFLYMM-FGREPDPLASRGIDLYLILHADHEV-PASTFAAHVVASTLSDLYSSV 237
Query: 289 AAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLK-SGQVVPGYGHA 347
AA + L GPLHG AN+ + ++ + K KE + K G + G GH
Sbjct: 238 AAAIAALKGPLHGGANEMAVRNYLEIG-------TPAKAKEIVEAATKPGGPKLMGVGHR 290
Query: 348 VLRKTDPRYTCQREFAQKHLP----DDSLFKLVSQVYKVV--PPVLIETGKVKNPWPNVD 401
V + DPR +EF++ ++ +LF + S + + V P + + +PNVD
Sbjct: 291 VYKAYDPRAKIFKEFSRDYVAKFGDPQNLFAIASAIEQEVLSHPYFQQ----RKLYPNVD 346
Query: 402 AHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 433
SG+ Y G+ Y+T +F +SR +G +A
Sbjct: 347 FWSGIAFYYMGI-PYEYFTPIFAMSRVVGWVA 377
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 171 bits (436), Expect = 8e-48
Identities = 88/392 (22%), Positives = 157/392 (40%), Gaps = 50/392 (12%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
+GL + T + +D GI R+RG I + L EE L L++ G++
Sbjct: 7 RGLENVIIKTTGLTYIDGINGILRYRGYDIND----LVNYASYEE-----LIHLMLYGEL 57
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG 187
P+ Q+ + E+P V++ + + P + + A L +
Sbjct: 58 PNRQQLNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILA-------SIY-- 108
Query: 188 VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD- 246
E ++ +IAK + A IYR + G + ++ ++ +F + F
Sbjct: 109 -DPKWNRATNKELAVQIIAKTATITANIYR--AKEGLKPKIPEPSESYAESFLAAT-FGK 164
Query: 247 --NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304
+ + M L +++DHE S + S LSD Y A + L GPLHG A
Sbjct: 165 KPTQEEIKAMDASLILYTDHEV-PASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAA 223
Query: 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSG-QVVPGYGHAVLRKTDPRYTCQREFA 363
+E K ++G E ++ + G + G+GH V + DPR + A
Sbjct: 224 EEAF----KQFVEIGS---VENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLA 276
Query: 364 QKHL----PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYY 419
+ +++ ++ K+ K+ +PN D +SG++ G + +
Sbjct: 277 KSFAEKNENVKKYYEIAERIEKLGVDTFGS----KHIYPNTDFYSGIVFYALGF-PIYMF 331
Query: 420 TVLFGVSRALGVLASLIWDRALGLPIERPKSL 451
T LF +SR LG LA +I + RP++L
Sbjct: 332 TSLFALSRVLGWLAHIIEYVEEQHRLIRPRAL 363
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 172 bits (438), Expect = 8e-48
Identities = 73/373 (19%), Positives = 142/373 (38%), Gaps = 49/373 (13%)
Query: 70 GMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD 126
G+ G+ +V T++ + P+ +RG + + L E+ + +LL G+
Sbjct: 52 GLAGV--VVDTTAISKVVPQTNSLTYRGYPVQD----LAARCSFEQ-----VAFLLWRGE 100
Query: 127 VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYND 186
+P++A++ S+ + + ++++L P++ HPM AI+ L +D
Sbjct: 101 LPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYL---GAEDPDEDD 157
Query: 187 GVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD 246
+M ++A LP + A R + G A + ++ NF M F
Sbjct: 158 -------AAANRAKAMRMMAVLPTIVAIDMR--RRRGLPPIAPHSGLGYAQNFLHMC-FG 207
Query: 247 ---NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303
+ ++++H N S +V S SD Y + + L G LHG A
Sbjct: 208 EVPETAVVSAFEQSMILYAEHGF-NASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGA 266
Query: 304 NQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFA 363
N+ V+ ++G +E++ L + + G+GH V R D R +
Sbjct: 267 NEAVM----HDMIEIG---DPANAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMKRAL 319
Query: 364 QK---HLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYT 420
++ + + + PN+D +G G ++ +T
Sbjct: 320 ERVGTVRDGQRWLDIYQVLAAE---MASA----TGILPNLDFPTGPAYYLMGF-DIASFT 371
Query: 421 VLFGVSRALGVLA 433
+F +SR G A
Sbjct: 372 PIFVMSRITGWTA 384
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 171 bits (435), Expect = 8e-48
Identities = 78/372 (20%), Positives = 152/372 (40%), Gaps = 42/372 (11%)
Query: 70 GMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD 126
G+ G+ T++ ++ + +RG + E L E+ + +LL +
Sbjct: 8 GLAGV--TADVTAISKVNSDTNSLLYRGYPVQE----LAAKCSFEQ-----VAYLLWNSE 56
Query: 127 VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYND 186
+P++++++A S +L +V ++ HPM A++ L +
Sbjct: 57 LPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVL---GAN---HAR 110
Query: 187 GVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD 246
S E E +M L+A P V A R + G+ + + D+SANF M F
Sbjct: 111 AQDSSP--EANLEKAMSLLATFPSVVAYDQR--RRRGEELIEPREDLDYSANFLWMT-FG 165
Query: 247 ---NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303
+ E + + ++++H N S T ++ S L+D + + + L GPLHG A
Sbjct: 166 EEAAPEVVEAFNVSMILYAEHSF-NASTFTARVITSTLADLHSAVTGAIGALKGPLHGGA 224
Query: 304 NQEVLIWLKKLQQQVGDNV--SEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQRE 361
N+ V+ +++ + +++ + + K ++ + L + V G+GH V + D R +
Sbjct: 225 NEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKS 284
Query: 362 FAQK---HLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNY 418
H + +Y + + E K PN+D +G G +
Sbjct: 285 ALDAMIKHYDRPEML----GLYNGLEAAMEEA---KQIKPNLDYPAGPTYNLMGF-DTEM 336
Query: 419 YTVLFGVSRALG 430
+T LF +R G
Sbjct: 337 FTPLFIAARITG 348
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 170 bits (433), Expect = 2e-47
Identities = 74/386 (19%), Positives = 156/386 (40%), Gaps = 44/386 (11%)
Query: 78 VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGG-EEPLPEGLFWLLVTGDVPSEAQV 133
+ T + +D +GI R+ G S+ + + + EE + +L + G++P+E ++
Sbjct: 16 IKWTRLTTIDGNKGILRYGGYSVED----IIASGAQDEE-----IQYLFLYGNLPTEQEL 66
Query: 134 QALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKY 193
+ ++ ++P V+ + P ++ AA+ A+ A +K
Sbjct: 67 RKYKETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMA-------ASETKFKWNK- 118
Query: 194 WEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSML-GFDNHQF-T 251
+ + + ++I ++ + +YR + ++ +F + G +
Sbjct: 119 -DTDRDVAAEMIGRMSAITVNVYR--HIMNMPAELPKPSDSYAESFLNAAFGRKATKEEI 175
Query: 252 ELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 311
+ M L +++DHE S + S LSD Y A + L GPLHG A + +
Sbjct: 176 DAMNTALILYTDHEV-PASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAI--- 231
Query: 312 KKLQQQVGDNVSEEKLKEFIWNTLKSG-QVVPGYGHAVLRKTDPRYTCQREFAQKHL--- 367
++ ++++ + + +G + + G+GH V + DPR + A+K
Sbjct: 232 -AQFDEIK---DPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKK 287
Query: 368 -PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGL-KEMNYYTVLFGV 425
++++ +++ K +PN D SG++ G N YT LF +
Sbjct: 288 PEVHKVYEIATKLEDFGIKAFGS----KGIYPNTDYFSGIVYMSIGFPLRNNIYTALFAL 343
Query: 426 SRALGVLASLIWDRALGLPIERPKSL 451
SR G A I + RP+++
Sbjct: 344 SRVTGWQAHFIEYVEEQQRLIRPRAV 369
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 169 bits (430), Expect = 4e-47
Identities = 87/382 (22%), Positives = 146/382 (38%), Gaps = 56/382 (14%)
Query: 60 GEVTVDMMYGGMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPE 116
G+RG ETS+ + E +RG I + L EE
Sbjct: 3 AMTKTA---KGLRGQ--SAGETSIATVGKEGHGLTYRGYRIED----LAANATFEE---- 49
Query: 117 GLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL-- 174
+ +LL+ +P+++++ A +K + LP + L P HPM + L
Sbjct: 50 -VAYLLLKNKLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGN 108
Query: 175 -NSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 233
E+ F E + L+A P + Y + GK I +
Sbjct: 109 LEPENGF--------------ENEQNIADRLVAIFPAIQCYWYHYS-HHGKRIDTELDDL 153
Query: 234 DWSANFTSML-GFDNHQF-TELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAG 291
+ F +L G Q + M L ++++HE N S + + LSD Y + A
Sbjct: 154 TLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEF-NASTFAARVCSATLSDIYSAVTAA 212
Query: 292 MNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRK 351
+ L GPLHG AN+ + L + + I L + +++ G+GHAV R+
Sbjct: 213 IATLRGPLHGGANEAAM----DLIMLYK---TPSEAIAGIKRKLANKELIMGFGHAVYRE 265
Query: 352 TDPRYTCQREFAQK---HLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLL 408
DPR + +AQK + D LF + + + K +PN+D +S
Sbjct: 266 RDPRNAIIKSWAQKLAPNAADGYLFDISDAIENTM-------QDEKKLFPNLDFYSATAY 318
Query: 409 QYYGLKEMNYYTVLFGVSRALG 430
+ + +T +F +SR G
Sbjct: 319 HFLNI-PTKLFTPIFVMSRVTG 339
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 168 bits (428), Expect = 2e-46
Identities = 100/407 (24%), Positives = 177/407 (43%), Gaps = 61/407 (14%)
Query: 78 VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPE-GLF----WLLVTGDVPS 129
CE+ + +D +EGI RG I + L + ++L+ G+ P+
Sbjct: 51 SCESKITFIDGDEGILLHRGFPI--------------DQLATDSNYLEVCYILLNGEKPT 96
Query: 130 EAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH 189
+ Q + + + + + F HPM+ AL + F Y+D +
Sbjct: 97 QEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGAL---AAF---YHDSLD 150
Query: 190 KSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--- 246
+ + + L++K+P +AA Y+ + G+ + ++ NF +M+ F
Sbjct: 151 VNN-PRHREIAAFRLLSKMPTMAAMCYKYSI--GQPFVYPRNDLSYAGNFLNMM-FSTPC 206
Query: 247 -----NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHG 301
N M L +H+DHE N S TV GS+ ++P+ AAG+ L GP HG
Sbjct: 207 EPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHG 265
Query: 302 LANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTL--KSGQVVPGYGHAVLRKTDPRYTCQ 359
AN+ L L+++ +E + EF+ + G+GH V + DPR T
Sbjct: 266 GANEAALKMLEEIG-------KKENIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVM 318
Query: 360 REFAQKHL----PDDSLFKLVSQVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGL 413
RE + L D L ++ ++ + P IE K +PNVD +SG++L+ G+
Sbjct: 319 RETCHEVLKELGTKDDLLEVAMELENIALNDPYFIE----KKLYPNVDFYSGIILKAMGI 374
Query: 414 KEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQY 460
+ +TV+F ++R +G +A + G+ I RP+ L T + +
Sbjct: 375 -PSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDF 420
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 3e-09
Identities = 87/607 (14%), Positives = 178/607 (29%), Gaps = 159/607 (26%)
Query: 13 DLHQISNFLRTFATDASTDLKAVLAAKIPSEQER-------------VKNF-----RKNY 54
D + + ++ + ++ ++ +K V+ F R NY
Sbjct: 34 DCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 55 G---------------STKVGEVTVDMMYGG--------------MRGIKGLVCETSVLD 85
T++ D +Y ++ + E L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---LR 148
Query: 86 PEEGIRFRGLSIPECQK-VLP----KAKGGEEPLPEGLFWLLVTGDVPSE----AQVQAL 136
P + + G+ K + + + + +FWL + + S +Q L
Sbjct: 149 PAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKL 205
Query: 137 ----SKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYN--DGVHK 190
+W SR++ S N +H A + L + V
Sbjct: 206 LYQIDPNWTSRSDHSS-------NIKLRIH---SIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 191 SKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQF 250
+K W ++ +L K ++ T ++ T S + SM +
Sbjct: 256 AKAW-----NAFNLSCK--ILLTTRFKQVTDFLSA----ATTTHISLDHHSM-TLTPDEV 303
Query: 251 TELMRLYLTIHSD---HEGGNVSAHTVHLVGSALSD--------PYLSFAAGMNGLAGPL 299
L+ YL E + + ++ ++ D +++ + L
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 300 HGLANQEVLIWLKKLQQQVG---DNVS-EEKLKEFIWNTLKS---GQVVPGYGHAVLRKT 352
+ L E +K+ ++ + L IW + VV L +
Sbjct: 364 NVLEPAE----YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 353 DPR------YTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPW----PNVDA 402
P+ + E K + +L + + Y + K + P +D
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP--------KTFDSDDLIPPYLD- 470
Query: 403 HSGVLLQYYG--LKEMNYY--TVLFGVSRALGVLASLIWD----RALGLPIERPKSLSTN 454
+ G LK + + LF R + + R S+ N
Sbjct: 471 --QYFYSHIGHHLKNIEHPERMTLF---RMV--FLDFRFLEQKIRHDSTAWNASGSI-LN 522
Query: 455 DL--VKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHL-STRYCYHLMRF----ENRPI 507
L +K Y + E + A + + LP+ +L ++Y L+R E+ I
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNA-ILDF-LPKIEENLICSKYT-DLLRIALMAEDEAI 579
Query: 508 WEEPYNQ 514
+EE + Q
Sbjct: 580 FEEAHKQ 586
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 84/596 (14%), Positives = 173/596 (29%), Gaps = 191/596 (32%)
Query: 113 PLPEGLFWLLVTGDVPSE---AQVQALSKSWASRAELPSHVVTMLNNFPNHL------HP 163
+P F+ E + ++ +A+ E P+ ++ F ++
Sbjct: 21 LVPTASFF---IASQLQEQFNKILPEPTEGFAADDE-PTTPAELVGKFLGYVSSLVEPSK 76
Query: 164 MSQFSAAI-TALNS-ESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAT------- 214
+ QF + L E+ + + ND +H L AKL T
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEG-ND-IH-------------ALAAKLLQENDTTLVKTKE 121
Query: 215 IYRNTFQGGKGIGAIDTNKDWSANFTSML-------------GFDNHQFTELMRLYLT-- 259
+ +N K SA F ++ G + F EL LY T
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 260 -----------------IHSDHEGGNVSAHTVHLVGSALSDP-------YLSFAAGMNGL 295
I + + V ++++ L +P YL +
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-EWLENPSNTPDKDYLLSIP----I 236
Query: 296 AGPLHGLANQEV--LIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVL---R 350
+ PL G+ Q ++ K L G E T S +V AV
Sbjct: 237 SCPLIGVI-QLAHYVVTAKLLGFTPG-----ELRSYLKGATGHSQGLVT----AVAIAET 286
Query: 351 KTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQY 410
+ + +K + LF + + Y+ P + +++ N
Sbjct: 287 DSWESFF---VSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLEN----------- 330
Query: 411 YGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS-TNDLVKQYSKTQIISLT 469
+ + +++ + + LP + +S N ++ ++
Sbjct: 331 -NEGVPSPMLSISNLTQE--QVQDYVNKTNSHLPAGKQVEISLVN------GAKNLV-VS 380
Query: 470 MIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEE---PYNQKGGTWRIKCSKR 526
G P+ + L+ L + + ++ P++++ ++K S R
Sbjct: 381 -------------GPPQSLYGLNL----TLRKAKAPSGLDQSRIPFSER----KLKFSNR 419
Query: 527 FSICISLT-----HSLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVT 581
F L HS ++ A + ++ +
Sbjct: 420 F-----LPVASPFHS-----H----------L--------LVPASDLINKDLVKNNVSFN 451
Query: 582 RKSLH-P--------DMRLSKQGVVYFVGNNMIFTVQVR-RHQSQICISHSLLFTP 627
K + P D+R+ + + + I + V+ +Q +H L F P
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERI-VDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 46.2 bits (109), Expect = 4e-05
Identities = 58/288 (20%), Positives = 99/288 (34%), Gaps = 76/288 (26%)
Query: 14 LHQISNF-------------LRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVG 60
+ Q++++ LR++ A+ + ++ A +E + ++F + K
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS--VRKAI 300
Query: 61 EVTVDMMYGGMRG--------IKGLVCETSVLDPEEGI-----RFRGLSIPECQKVLPKA 107
V + + G+R + + E S+ + EG+ L+ + Q + K
Sbjct: 301 TV---LFFIGVRCYEAYPNTSLPPSILEDSL-ENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 108 KGGEEPLPEG------LF----WLLVTGDVPS-EAQVQALSKSWA------SRAELPSHV 150
LP G L L+V+G S L K+ A SR
Sbjct: 357 ---NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 151 VTMLNNF-----PNHLHPMSQFSAAITA--LNSESKFAKA------YN--DGVHKSKYWE 195
+ N F P H H + S I + + F Y+ DG
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 196 YVYEDSMDLIAKLPV--VAATIYRNT----F-QGG-KGIGA-IDTNKD 234
+ E +D I +LPV T ++ T F GG G+G NKD
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 41.2 bits (96), Expect = 0.001
Identities = 37/212 (17%), Positives = 58/212 (27%), Gaps = 84/212 (39%)
Query: 416 MNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKTQIISLTMIEYYL 475
M+ Y ++ +W+RA + S D+V +LT
Sbjct: 1633 MDLYKT-SKAAQD-------VWNRADNHFKDT-YGFSILDIVINNPV----NLT------ 1673
Query: 476 CAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSKRFSICISLTH 535
I +G +G R Y M FE ++K K F +
Sbjct: 1674 ----IHFGGEKG---KRIRENYSAMIFETIV-----------DGKLKTEKIFK---EINE 1712
Query: 536 SLGQITPTPKPQSGLSVYVVLTLFVMMLRAWQIAPTPKPQSGLFVTRKSLHPDMRLSKQG 595
T + LS T F Q A L + K+ D++ +G
Sbjct: 1713 HSTSYTFRS-EKGLLS----ATQFT------QPA--------LTLMEKAAFEDLK--SKG 1751
Query: 596 VV----YFVGNNMIFTVQVRRHQSQICISHSL 623
++ F G HSL
Sbjct: 1752 LIPADATFAG-------------------HSL 1764
Score = 40.8 bits (95), Expect = 0.002
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 35/142 (24%)
Query: 77 LVCETSVLDPEEGI---RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPS--EA 131
L V+ E + +RG+++ Q +P+ + G G+ + S +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTM---QVAVPRDELGRSNY--GMIAINPGRVAASFSQE 1824
Query: 132 QVQALSKSWASRAELPSHVVTMLN-NFPNHLHPMSQFSAA--ITALNSESKFAKAYNDGV 188
+Q + + R +V ++N N N Q+ AA + AL++ + +
Sbjct: 1825 ALQYVVERVGKRT---GWLVEIVNYNVEN-----QQYVAAGDLRALDTVTNVLN--FIKL 1874
Query: 189 HKSKYWEYVYEDSMDLIAKLPV 210
K I +L
Sbjct: 1875 QKID------------IIELQK 1884
Score = 38.1 bits (88), Expect = 0.012
Identities = 88/495 (17%), Positives = 151/495 (30%), Gaps = 181/495 (36%)
Query: 18 SNFLRTFATDASTDLKAVLAAKIPSEQE----RVKNFRKNY------------------- 54
+ +L D+ A LAAK+ E + + K KNY
Sbjct: 93 NCYLE------GNDIHA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 55 -GSTKVGEVTVDMMYGG----------MRGI----KGLV----------CETSVLDPEEG 89
+ G + ++GG +R + LV + +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 90 IRF--RGLSIPECQKVL--PKAKGGEE---------PL-------------------PEG 117
+ +GL+I + L P ++ PL P
Sbjct: 206 EKVFTQGLNI---LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 118 LFWLL--VTG---DVPSEAQVQALSKSWASRAELPSHVVTML--------NNFPNH-LHP 163
L L TG + + A A + SW S +T+L +PN L P
Sbjct: 263 LRSYLKGATGHSQGLVT-AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 164 -MSQFSA-----------AITALNSES--KFAKAYNDGVHKSKYWEYVYEDSMDLI--AK 207
+ + S +I+ L E + N + K + + L+ AK
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK------QVEISLVNGAK 375
Query: 208 LPVVA---ATIYR--NTFQGGKGIGAIDTNKDWSANFTSM-LGFDNHQFTELMRLYLTI- 260
VV+ ++Y T + K +D ++ F+ L F ++F L +
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---IPFSERKLKFS-NRF-------LPVA 424
Query: 261 ---HSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQ 317
HS L+ L +SF A + P++ + L +
Sbjct: 425 SPFHSHLLVP-----ASDLINKDLVKNNVSFNAKD--IQIPVYDTFDGSDL-------RV 470
Query: 318 VGDNVSEEKLKEFI------WNTLKSGQ---VV---PG--YGHAVLRKTDPRYTCQREFA 363
+ ++S E++ + I W T + ++ PG G VL + T R
Sbjct: 471 LSGSIS-ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Query: 364 QKHL---PDDSL-FK 374
L PDD FK
Sbjct: 530 AGTLDINPDDDYGFK 544
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation
factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding
protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1
PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*
Length = 190
Score = 45.1 bits (106), Expect = 1e-05
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 463 TQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIK 522
I +E + A Y L +L Y L + P+WE+ N++GG W I
Sbjct: 34 RLISKFDTVEDF-WALYNHIQLSS---NLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLIT 89
Query: 523 CSKRFS 528
+K+
Sbjct: 90 LNKQQR 95
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis,
RNA binding protein; HET: GTA; 2.00A {Homo sapiens}
SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A*
2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A*
2w97_B*
Length = 217
Score = 45.6 bits (107), Expect = 2e-05
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 459 QYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGT 518
Q + I +E + A Y L +L Y L + P+WE+ N++GG
Sbjct: 57 QANLRLISKFDTVEDF-WALYNHIQLSS---NLMPGCDYSLFKDGIEPMWEDEKNKRGGR 112
Query: 519 WRIKCSKRFS 528
W I +K+
Sbjct: 113 WLITLNKQQR 122
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural
genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum}
PDB: 3m93_A*
Length = 189
Score = 44.3 bits (104), Expect = 3e-05
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 459 QYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGT 518
+ Q+ +E + + Y L+ Y+L + +P+WE+ N KGG
Sbjct: 23 EDCLKQVAVFDTVEDF-WSLYNHIQAAS---GLTWGSDYYLFKEGIKPMWEDENNVKGGR 78
Query: 519 WRIKCSKRFS 528
W + K+
Sbjct: 79 WLVVVDKQKR 88
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex,
acetylation, phosphoprotein, protein synthesis
inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB:
3hxg_A*
Length = 189
Score = 43.1 bits (101), Expect = 7e-05
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 458 KQYSKT--QIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQK 515
+ + ++ + + IE + P ++ ++ + + P WE+P N+
Sbjct: 27 LDWDECLEKVATFSTIEDFWS-VLTHTVRP---REITYGKDLYMFKSDIMPKWEDPKNEN 82
Query: 516 GGTWRIKCSKR 526
GG W I + R
Sbjct: 83 GGRWLINVTAR 93
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic
initiation factor 4E, EIF4E, translation regulator;
1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Length = 177
Score = 42.2 bits (99), Expect = 1e-04
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 452 STNDLVKQYSKT--QIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWE 509
+ T I + + +E + Y P L+ +H + + P WE
Sbjct: 16 QGKSRQVAWGSTIHPIHTFSTVEDFWG-LYNNIHNPS---KLNVGADFHCFKNKIEPKWE 71
Query: 510 EPYNQKGGTWRIKCSKR 526
+P GG W I C +
Sbjct: 72 DPICANGGKWTISCGRG 88
>2jgb_A Eukaryotic translation initiation factor 4E type 2;
phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation,
CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A
Length = 195
Score = 42.4 bits (99), Expect = 1e-04
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 490 HLSTRYCYHLMRFENRPIWEEPYNQKGGTWRIKCSK 525
L+ +HL + +P+WE+ N+ GG W I+ K
Sbjct: 67 DLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRK 102
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR
{Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Length = 213
Score = 41.7 bits (97), Expect = 3e-04
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 447 RPKSLSTNDLVKQYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRP 506
+P + + S +E + A P L + YH+ R + RP
Sbjct: 49 KPAVDKSESWSDLLRP--VTSFQTVEEF-WAIIQNIPEPH---ELPLKSDYHVFRNDVRP 102
Query: 507 IWEEPYNQKGGTWRIKCSKR 526
WE+ N KGG W + +
Sbjct: 103 EWEDEANAKGGKWSFQLRGK 122
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 32.7 bits (75), Expect = 0.44
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 266 GGNVSAHTVHLVGSALSDPYLSFAA---GMNGLAGPLHGLANQEVLIWLKKLQQQ 317
GG S TV + S YL +A +NGL G H L + L WL++ +Q
Sbjct: 560 GGARSTTTVDM-----SRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQ 609
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest
consortium for structural genomics, structure
initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus}
SCOP: c.92.1.3
Length = 156
Score = 28.3 bits (63), Expect = 5.4
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 357 TCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEM 416
++ +PD+++ ++ + VVP + V P++ + G+KE
Sbjct: 61 IAFAARKRRPMPDEAIREMNCDIIYVVPLFISYGLHVTEDLPDLLGFP----RGRGIKEG 116
Query: 417 NYYTVLFGVSRALGV---LASLIWDRA 440
+ + +G + I +
Sbjct: 117 EFEGKKVVICEPIGEDYFVTYAILNSV 143
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 29.1 bits (66), Expect = 6.1
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 195 EYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDN 247
Y+YE + + K+ ++A IY + DT K+ GFD
Sbjct: 422 AYLYEMNDPVEKKIEILAKEIY-----RAGRVEFSDTAKNALKFIKK-HGFDE 468
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 28.3 bits (63), Expect = 6.4
Identities = 5/29 (17%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 30 TDLKAVLAAKIPSEQ-ERVKNFRKNYGST 57
+ L +I +E+ +++ + + YG++
Sbjct: 197 IHIITYLEGRITAEEKSKIEQYLQTYGAS 225
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
3rbo_A* 3sin_A* 1eg7_A
Length = 557
Score = 28.7 bits (65), Expect = 7.2
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 189 HKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDN 247
S + +Y + + K+ +A IY G G+ + S LG+ N
Sbjct: 431 RPSNF-HVLYNLDLSIKDKIAKIATEIY-----GADGVNYTAEADKAIQRYES-LGYGN 482
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 27.8 bits (62), Expect = 8.7
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 30 TDLKAVLAAKIPSEQ-ERVKNFRKNYGS 56
+ + + ++ K +R+ YGS
Sbjct: 205 ESIFEYVKENLDETMIDKFKQYRQKYGS 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,858,774
Number of extensions: 593561
Number of successful extensions: 1211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1119
Number of HSP's successfully gapped: 38
Length of query: 645
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 545
Effective length of database: 3,909,693
Effective search space: 2130782685
Effective search space used: 2130782685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)