RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14235
(645 letters)
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 435
Score = 435 bits (1119), Expect = e-148
Identities = 327/432 (75%), Positives = 376/432 (87%)
Query: 29 STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1 STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60
Query: 89 GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+ QV +SK WA RA LPS
Sbjct: 61 GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120
Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKL 208
HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKL
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKL 180
Query: 209 PVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGN 268
P VAA IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGN
Sbjct: 181 PCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGN 240
Query: 269 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLK 328
VSAHT HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+
Sbjct: 241 VSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLR 300
Query: 329 EFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLI 388
++IWNTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+
Sbjct: 301 DYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLL 360
Query: 389 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERP 448
E GK KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERP
Sbjct: 361 EQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERP 420
Query: 449 KSLSTNDLVKQY 460
KS+ST L K
Sbjct: 421 KSMSTAGLEKLS 432
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId:
562]}
Length = 426
Score = 224 bits (572), Expect = 2e-67
Identities = 95/427 (22%), Positives = 173/427 (40%), Gaps = 49/427 (11%)
Query: 41 PSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSV--LDPEEGI-RFRGLSI 97
+ + V + R G T D G CE+ + +D +EGI RG I
Sbjct: 22 GTLGQDVIDIRTLGSK---GVFTFD---PGFTST--ASCESKITFIDGDEGILLHRGFPI 73
Query: 98 PECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNF 157
+ + + ++L+ G+ P++ Q + + + + + F
Sbjct: 74 DQL---------ATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAF 124
Query: 158 PNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYR 217
HPM+ AL + + N+ + + L++K+P +AA Y+
Sbjct: 125 RRDSHPMAVMCGITGALAAFYHDSLDVNN-------PRHREIAAFRLLSKMPTMAAMCYK 177
Query: 218 NTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTE-------LMRLYLTIHSDHEGGNVS 270
+ + ++ NF +M+ + E M L +H+DH N S
Sbjct: 178 YSIGQP--FVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADH-EQNAS 234
Query: 271 AHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEF 330
TV GS+ ++P+ AAG+ L GP HG AN+ L L+++ + K+
Sbjct: 235 TSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDK 294
Query: 331 IWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP----DDSLFKLVSQVYKVVPPV 386
+ G+GH V + DPR T RE + L D L ++ ++ + +
Sbjct: 295 ND-----SFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIA--L 347
Query: 387 LIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIE 446
K +PNVD +SG++L+ G+ + +TV+F ++R +G +A + G+ I
Sbjct: 348 NDPYFIEKKLYPNVDFYSGIILKAMGI-PSSMFTVIFAMARTVGWIAHWSEMHSDGMKIA 406
Query: 447 RPKSLST 453
RP+ L T
Sbjct: 407 RPRQLYT 413
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus
[TaxId: 274]}
Length = 374
Score = 215 bits (549), Expect = 1e-64
Identities = 96/396 (24%), Positives = 166/396 (41%), Gaps = 36/396 (9%)
Query: 70 GMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD 126
G+ G+ L E+ + +D ++G + G+ I E E+ E +LL+ G
Sbjct: 4 GLEGV--LFTESRMCYIDGQQGKLYYYGIPIQELA---------EKSSFEETTFLLLHGR 52
Query: 127 VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYND 186
+P +++ S + A R LP+H++ +P HPMS A++ D
Sbjct: 53 LPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSE--------FGMLD 104
Query: 187 GVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANF--TSMLG 244
E +YE +DLIAK + A R + GK + +ANF +
Sbjct: 105 PTEGDISREALYEKGLDLIAKFATIVAANKR--LKEGKEPIPPREDLSHAANFLYMANGV 162
Query: 245 FDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304
+ + LM L +H G N S T S +D Y + A + L GP HG AN
Sbjct: 163 EPSPEQARLMDAALILH-AEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGAN 221
Query: 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQ 364
+ V+ ++ + + E+ +E++ L + + G GH V + DPR + A+
Sbjct: 222 EAVMRMIQ-------EIGTPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLAR 274
Query: 365 KHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFG 424
K Q+ K+V + + +PNVD +SGV+ G + ++T +F
Sbjct: 275 LVAEKHGHSKEY-QILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDLGF-SLEFFTPIFA 332
Query: 425 VSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQY 460
V+R G + ++ + L + RP + +L Y
Sbjct: 333 VARISGWVGHILEYQELDNRLLRPGAKYVGELDVPY 368
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 367
Score = 212 bits (541), Expect = 1e-63
Identities = 86/389 (22%), Positives = 151/389 (38%), Gaps = 28/389 (7%)
Query: 66 MMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVT 124
++ G+ + V + +D E+GI R+RG +I + L EE +L++
Sbjct: 1 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIED----LVNYGSYEE-----TIYLMLY 51
Query: 125 GDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAY 184
G +P++ ++ L E+P V+ + P + AL S
Sbjct: 52 GKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALASI------- 104
Query: 185 NDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLG 244
K+ E E ++ +IAK+ + A +YR I + S S
Sbjct: 105 ---DKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFLLASFAR 161
Query: 245 FDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLAN 304
M L +++DH S + S LSD Y S A + L GPLHG A
Sbjct: 162 EPTTDEINAMDKALILYTDH-EVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAA 220
Query: 305 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQ 364
+E ++ F + + G+GH V + DPR ++ A
Sbjct: 221 EEAFKQFIEIGD------PNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLAL 274
Query: 365 KHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFG 424
+ ++ + ++ + + + I+ K +PN D +SG++ G + +T LF
Sbjct: 275 TLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGF-PVYMFTALFA 333
Query: 425 VSRALGVLASLIWDRALGLPIERPKSLST 453
+SR LG LA +I + RP++L
Sbjct: 334 LSRTLGWLAHIIEYVEEQHRLIRPRALYV 362
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R
[TaxId: 56673]}
Length = 377
Score = 192 bits (488), Expect = 6e-56
Identities = 75/396 (18%), Positives = 149/396 (37%), Gaps = 30/396 (7%)
Query: 61 EVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLF 119
E T+ + G+ G+ V S ++ + +RG + E L E+ +
Sbjct: 1 EPTI---HKGLAGVTADVTAISKVNSDTNSLLYRGYPVQE----LAAKCSFEQ-----VA 48
Query: 120 WLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESK 179
+LL ++P++++++A S +L +V ++ HPM A++
Sbjct: 49 YLLWNSELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVS------- 101
Query: 180 FAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANF 239
N + E E +M L+A P V A R D + + +
Sbjct: 102 -VLGANHARAQDSSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLW 160
Query: 240 TSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPL 299
+ + E + + ++ N S T ++ S L+D + + + L GPL
Sbjct: 161 MTFGEEAAPEVVEAFNVSMILY-AEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPL 219
Query: 300 HGLANQEVLIWLKKLQQQVGDNVSEEKL--KEFIWNTLKSGQVVPGYGHAVLRKTDPRYT 357
HG AN+ V+ +++ + +++ E K ++ + L + V G+GH V + D R
Sbjct: 220 HGGANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVP 279
Query: 358 CQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMN 417
+ + + + + + + K PN+D +G G +
Sbjct: 280 TMKSALDAMIKHYDRPE----MLGLYNGLEAAMEEAKQIKPNLDYPAGPTYNLMGF-DTE 334
Query: 418 YYTVLFGVSRALGVLASLIWDRALGLPIERPKSLST 453
+T LF +R G A I ++ + RP S
Sbjct: 335 MFTPLFIAARITGWTAH-IMEQVADNALIRPLSEYN 369
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 371
Score = 179 bits (455), Expect = 3e-51
Identities = 96/397 (24%), Positives = 166/397 (41%), Gaps = 36/397 (9%)
Query: 67 MYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTG 125
+ G+ + +D +EG +RG S+ E E E + +LL G
Sbjct: 1 LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELA---------ELSTFEEVVYLLWWG 51
Query: 126 DVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYN 185
+PS ++++ K A LP V+ ++ P + HPM I+ L +
Sbjct: 52 KLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSG---- 107
Query: 186 DGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGF 245
E VY + + AK+P + A YR + G +ANF ML
Sbjct: 108 ---DIPVTPEEVYRIGISVTAKIPTIVANWYR--IKNGLEYVPPKEKLSHAANFLYMLHG 162
Query: 246 DNH--QFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLA 303
+ ++ + M + L ++++HE N S V VGS LSD Y + AG+ L GP+HG A
Sbjct: 163 EEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGA 221
Query: 304 NQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFA 363
+E + ++ EK++E+ + L+ + + G GH V + DPR +++A
Sbjct: 222 VEEAIKQFMEIGS-------PEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYA 274
Query: 364 QKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLF 423
K ++ ++V L + K NVD SG++ + + YT +F
Sbjct: 275 SKLGDKKLFEIAE-RLERLVEEYLSK----KGISINVDYWSGLVFYGMKI-PIELYTTIF 328
Query: 424 GVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQY 460
+ R G A + + I RP+ ++ K+Y
Sbjct: 329 AMGRIAGWTAH-LAEYVSHNRIIRPRLQYVGEIGKKY 364
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 182
Score = 44.2 bits (104), Expect = 9e-06
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 459 QYSKTQIISLTMIEYYLCAFYIKYGLPEGAFHLSTRYCYHLMRFENRPIWEEPYNQKGGT 518
Q + I +E + Y L +L Y L + P+WE+ N++GG
Sbjct: 22 QANLRLISKFDTVEDFWA-LYNHIQLSS---NLMPGCDYSLFKDGIEPMWEDEKNKRGGR 77
Query: 519 WRIKCSKRFS 528
W I +K+
Sbjct: 78 WLITLNKQQR 87
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 43.1 bits (101), Expect = 4e-05
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 447 RPKSLSTNDLVKQYSKTQIISLTMIEYYLCAF-YIKYGLPEGAFHLSTRYCYHLMRFENR 505
+P + + S +E + I L + YH+ R + R
Sbjct: 49 KPAVDKSESWSDLLRP--VTSFQTVEEFWAIIQNIPE-----PHELPLKSDYHVFRNDVR 101
Query: 506 PIWEEPYNQKGGTWRIKCSKR 526
P WE+ N KGG W + +
Sbjct: 102 PEWEDEANAKGGKWSFQLRGK 122
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 30.2 bits (68), Expect = 0.98
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 191 SKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDN 247
+ +Y + + K+ +A IY G G+ + S+ G+ N
Sbjct: 426 PSNFHVLYNLDLSIKDKIAKIATEIY-----GADGVNYTAEADKAIQRYESL-GYGN 476
>d2f1da1 d.14.1.9 (A:10-95) Imidazole glycerol phosphate dehydratase
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 27.4 bits (61), Expect = 1.4
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 16/78 (20%)
Query: 213 ATIYRNTFQ---------GGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSD 263
+ R T + G G+ + + ML Q + + +
Sbjct: 4 GEVKRVTKETNVSVKINLDGTGVADSSSGIPF---LDHML----DQLASHGLFDVHVRAT 56
Query: 264 HEGGNVSAHTVHLVGSAL 281
+ HT + A+
Sbjct: 57 GDVHIDDHHTNEDIALAI 74
>d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus)
[TaxId: 9913]}
Length = 130
Score = 27.5 bits (61), Expect = 2.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 122 LVTGDVPSEAQVQALSKSWASRAEL-PSHVVTMLNNFPNH 160
+V+G +P + V+ L +S SR E+ +HV+ L+ N
Sbjct: 48 MVSGFIPLKPTVKMLERSNVSRTEVSNNHVLIYLDKVTNE 87
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 304
Score = 27.0 bits (59), Expect = 8.4
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 224 KGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHE-GGNVSAHTVHLVGSALS 282
G TN D S FDN ++ L++L + SD E A T+ +V S S
Sbjct: 211 NATGDNLTNLDLSTPDQ----FDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSS 266
Query: 283 DPYL---SFAAGM 292
+ +F M
Sbjct: 267 NQNTFFSNFRVSM 279
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,400,093
Number of extensions: 112815
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 15
Length of query: 645
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 554
Effective length of database: 1,158,166
Effective search space: 641623964
Effective search space used: 641623964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)