BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14236
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KJF9|T2EB_BOVIN General transcription factor IIE subunit 2 OS=Bos taurus GN=GTF2E2
PE=2 SV=1
Length = 289
Score = 301 bits (770), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 159/292 (54%), Positives = 213/292 (72%), Gaps = 8/292 (2%)
Query: 1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNNM 60
MDP+LLRER+LFKK+ALSTP VEKR + K K SS S +S S+ +
Sbjct: 1 MDPSLLRERELFKKRALSTPAVEKRSVSSEASSSKKKKAKLEHGGSSGSKQNSDHSNGSF 60
Query: 61 AYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTE 120
K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET LD+G K K WL +E
Sbjct: 61 NLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMSE 120
Query: 121 ALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKA 180
AL NNPKIEV++G KY FKP + +KD+K LL+LL QHD +G+GGILL+D+ E LP+ +KA
Sbjct: 121 ALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDQHDQRGLGGILLEDIEEGLPNSQKA 179
Query: 181 LKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLE 240
+K +L ++I++V RP DK+K++F+NDKS Q +DE+FQKLWRS++VD MD +KI+EYL+
Sbjct: 180 VK--ALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEYLK 236
Query: 241 KQGIRPIQDHGFKK--PVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS 290
+QGI +QD G KK P+ +K +K++FK NEHLA VL++Y ++
Sbjct: 237 RQGISSMQDSGPKKVAPIQRRKKPASQKKRRFKT--HNEHLAGVLKDYSDIA 286
>sp|P29084|T2EB_HUMAN Transcription initiation factor IIE subunit beta OS=Homo sapiens
GN=GTF2E2 PE=1 SV=1
Length = 291
Score = 295 bits (755), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/294 (54%), Positives = 215/294 (73%), Gaps = 10/294 (3%)
Query: 1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKT--SSSSSSSLSSSLGSSN 58
MDP+LLRER+LFKK+ALSTP VEKR A + KK SS S +S S+
Sbjct: 1 MDPSLLRERELFKKRALSTPVVEKRSASSESSSSSSKKKKTKVEHGGSSGSKQNSDHSNG 60
Query: 59 NMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLS 118
+ K++SGSS YKFGVLAKIV +MK RHQ GD HPLT+DEILDET LD+G K K WL
Sbjct: 61 SFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLM 120
Query: 119 TEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 178
TEAL NNPKIEVI+G KY FKP + ++D+K LL+LL QHD +G+GGILL+D+ E+LP+ +
Sbjct: 121 TEALVNNPKIEVIDG-KYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEALPNSQ 179
Query: 179 KALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEY 238
KA+K +L ++I++V RP DK+K++F+NDKS Q +DE+FQKLWRS++VD MD +KI+EY
Sbjct: 180 KAVK--ALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEEY 236
Query: 239 LEKQGIRPIQDHGFKK--PVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS 290
L++QGI +Q+ G KK P+ +K +K++FK NEHLA VL++Y ++
Sbjct: 237 LKRQGISSMQESGPKKVAPIQRRKKPASQKKRRFKT--HNEHLAGVLKDYSDIT 288
>sp|P29540|T2EB_XENLA General transcription factor IIE subunit 2 OS=Xenopus laevis
GN=gtf2e2 PE=2 SV=1
Length = 288
Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/292 (55%), Positives = 224/292 (76%), Gaps = 10/292 (3%)
Query: 1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNNM 60
MDPALLR+R+LFKK+AL+TP VEKR + +S+ K K + SS+S S SS GS+ +
Sbjct: 1 MDPALLRDRELFKKRALTTPAVEKRPSASSESSKKKRAKLELSSTSGSKPSSD-GSNGSF 59
Query: 61 AYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTE 120
KS+SGSS YKFGVLAKIV +MK RHQ GD +PLT++EILDET LD+G K K WL +E
Sbjct: 60 NLKSLSGSSGYKFGVLAKIVNYMKTRHQRGDTYPLTLEEILDETQHLDIGIKQKQWLMSE 119
Query: 121 ALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKA 180
AL NNPKIE+I+G KY FKP + +KD+K LL+LL +HD +G+GGILL+D+ E LP+ +KA
Sbjct: 120 ALVNNPKIEIIDG-KYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGLPNAQKA 178
Query: 181 LKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLE 240
+K +L ++I++VTRP DK+K++FYNDKS Q +DE+FQKLWRS+ VD MD++KI+EYL+
Sbjct: 179 IK--ALGDQIVFVTRP-DKKKILFYNDKSCQFTVDEEFQKLWRSVPVDSMDDEKIEEYLK 235
Query: 241 KQGIRPIQDHGFKKPVLP--GRKKNMNRKKQFKKPRDNEHLADVLENYEAVS 290
+QGI +Q+ G KK ++P RKK +++++FK N+HLA VL++Y V+
Sbjct: 236 RQGISSMQESGPKK-IIPVQKRKKATSQRRRFKT--HNDHLAGVLKDYTDVA 284
>sp|Q9D902|T2EB_MOUSE General transcription factor IIE subunit 2 OS=Mus musculus
GN=Gtf2e2 PE=2 SV=2
Length = 292
Score = 291 bits (744), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 209/293 (71%), Gaps = 7/293 (2%)
Query: 1 MDPALLRERDLFKKKALSTPTVEKRKAETSKDEPWKAKKAKTSSSSSSSLSSSLGSSNN- 59
MDP+LLR+R+LFKK+ALSTP VEKR + +KK K S S S +N
Sbjct: 1 MDPSLLRDRELFKKRALSTPVVEKRAVPSESPSSSSSKKKKAKVEHGGSSGSKQNSDHNN 60
Query: 60 --MAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWL 117
K++SGSS YKFGVLAKIV +MK RHQ GD HPLT++EILDET LD+G K K WL
Sbjct: 61 GSFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWL 120
Query: 118 STEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHC 177
TEAL NNPKIEV++G KY FKP + +KD+K LL+LL HD +G+GGILL+D+ E LP+
Sbjct: 121 MTEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGLPNS 179
Query: 178 EKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKE 237
+KA+K +L ++I++V+RP DK+K++F+NDKS Q +DE+FQKLWRS++VD MD +KI+E
Sbjct: 180 QKAVK--ALGDQILFVSRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSMDEEKIEE 236
Query: 238 YLEKQGIRPIQDHGFKKPVLPGRKKNMNRKKQFKKPRDNEHLADVLENYEAVS 290
YL++QGI +Q+ G KK R+K +K+ + NEHLA VL++Y ++
Sbjct: 237 YLKRQGISSMQESGPKKVASIQRRKKPASQKKRRFKTHNEHLAGVLKDYSDIT 289
>sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfa2 PE=1 SV=2
Length = 285
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 29/208 (13%)
Query: 99 EILDETNQLDVGNKVKIWLST-------EALQNNPKIEVIEGNK-YIFKPVFKIKDRKGL 150
E L E N+ ++ +LST L+ N +I E N+ + FKP+ I+ GL
Sbjct: 88 EYLKERNEPKTAEEIASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLHNIRSGAGL 147
Query: 151 LKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYV-TRPADKRKVMFYNDKS 209
L L K G+ + ++R+ P+ L+ L Q E++ + TR K+++ NDKS
Sbjct: 148 LAYLDSQ--KTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKMVWRNDKS 205
Query: 210 AQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFKKPVLPG--RKKNMNRK 267
+D++FQ++W I + + + L K G++P V P ++ N+
Sbjct: 206 CDCHVDKEFQQVWHEIPIPPTLD--LASELGKYGLKPTS-------VDPSTVKRAGHNQT 256
Query: 268 KQFKKPR------DNEHLADVLENYEAV 289
+ KKP+ N HL ++L +Y ++
Sbjct: 257 PKQKKPKTRRGKITNTHL-NILRDYSSM 283
>sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2 OS=Dictyostelium
discoideum GN=gtf2e2 PE=3 SV=1
Length = 276
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 94 PLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGN-KYIFKPVFKIKDRKGLLK 152
P EI+ TN + + +K +I E L+NN KI + GN ++ FKP F ++ ++ +L
Sbjct: 86 PADTKEIMHSTNHM-IDDKPEIL---ELLRNNEKI-IDHGNDRFSFKPKFNVRTQRDILD 140
Query: 153 LLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQL 212
LL + GGIL+ ++ ES + E +K L +I + ++F ND+ ++
Sbjct: 141 LLPNYP----GGILVSELAESYNNAESDVKKLKETKQIFAIKAAESACDIIFPNDERLRV 196
Query: 213 DLDEDFQKLWRSI 225
L + +W+SI
Sbjct: 197 PLSSELVDMWKSI 209
>sp|P36145|T2EB_YEAST Transcription initiation factor IIE subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFA2 PE=1
SV=3
Length = 328
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 22/146 (15%)
Query: 150 LLKLLK-QHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKR-KVMFYND 207
LLKLL+ Q KGI D+++ P C++ + L ++I+ + DK + ++YN
Sbjct: 192 LLKLLRSQVTFKGIS---CKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNS 248
Query: 208 KSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQDHGFK-KPVLPGRKKNMNR 266
+DE+F K+W +N ++ ++ E R +QD G K V P K +
Sbjct: 249 GGNLKCIDEEFVKMW--------ENVQLPQFAELP--RKLQDLGLKPASVDPATIKRQTK 298
Query: 267 KKQFKKPRD------NEHLADVLENY 286
+ + KK R N H+ +L++Y
Sbjct: 299 RVEVKKKRQRKGKITNTHMTGILKDY 324
>sp|C0QTM3|PNP_PERMH Polyribonucleotide nucleotidyltransferase OS=Persephonella marina
(strain DSM 14350 / EX-H1) GN=pnp PE=3 SV=1
Length = 709
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 175 PHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDK 234
PH K + L +I + P+ K ++ ++DLD+ + L R +VDG DK
Sbjct: 554 PHAPKVITMRVLPEKIPVIIGPSGKNIKKIIDETGVKIDLDQ--EGLVRIYAVDGESADK 611
Query: 235 IKEYLEK 241
KE +E+
Sbjct: 612 AKEMIER 618
>sp|O49196|KAP2_ARATH Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana
GN=AKN2 PE=2 SV=1
Length = 293
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 141 VFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKH 183
V + +D KGL KL + +KG GI DD E+ +CE LKH
Sbjct: 225 VCESRDPKGLYKLARAGKIKGFTGI--DDPYEAPVNCEVVLKH 265
>sp|Q93EU6|CH60_ENTFA 60 kDa chaperonin OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=groL PE=3 SV=2
Length = 541
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 41 KTSSSSSSSLSSSLGSSNNMAYKSMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEI 100
KT+ ++SS + S +A + S K G L I M++ G+D +TI+E
Sbjct: 124 KTAVEELHNISSVVDSKEAIAQVAAVSSGSEKVGQL--IADAMEKV---GNDGVITIEES 178
Query: 101 LDETNQLDVGNKVKI---WLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQ- 156
+LDV ++ +LS + +N K+E + N YI KI + + +L LL+Q
Sbjct: 179 KGIETELDVVEGMQFDRGYLSQYMVTDNDKMEAVLENPYILITDKKISNIQDILPLLEQI 238
Query: 157 ----HDLKGIGGILLDDV-RESLPHCEKALKHLSLQNEIIYVTRP--ADKRKVMF 204
L I+ DDV E+LP L + ++ V P D+RK M
Sbjct: 239 LQQSRPLL----IIADDVDGEALPTL--VLNKIRGTFNVVAVKAPGFGDRRKAML 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,554,766
Number of Sequences: 539616
Number of extensions: 4737050
Number of successful extensions: 23765
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 21291
Number of HSP's gapped (non-prelim): 1631
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)