Query psy14236
Match_columns 290
No_of_seqs 135 out of 200
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:53:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d8j_A General transcription f 99.9 1.6E-28 5.3E-33 188.3 7.2 81 64-145 1-81 (81)
2 2dk8_A DNA-directed RNA polyme 89.1 0.85 2.9E-05 34.5 5.9 46 147-196 16-66 (81)
3 1xmk_A Double-stranded RNA-spe 84.1 2.4 8.2E-05 31.7 6.0 51 146-205 12-67 (79)
4 2htj_A P fimbrial regulatory p 83.1 3.6 0.00012 29.7 6.6 57 147-208 2-62 (81)
5 1wi9_A Protein C20ORF116 homol 80.9 0.99 3.4E-05 33.5 2.7 58 74-141 7-66 (72)
6 2vxz_A Pyrsv_GP04; viral prote 77.4 0.86 2.9E-05 38.6 1.6 71 147-225 13-87 (165)
7 3cuq_B Vacuolar protein-sortin 75.5 18 0.00061 31.7 9.8 116 68-193 70-201 (218)
8 2k02_A Ferrous iron transport 73.8 4.4 0.00015 30.8 4.7 43 147-194 4-50 (87)
9 1xn7_A Hypothetical protein YH 73.0 4.9 0.00017 29.7 4.7 43 146-193 3-49 (78)
10 1u5t_A Appears to BE functiona 72.5 41 0.0014 29.9 11.4 120 65-193 85-214 (233)
11 2heo_A Z-DNA binding protein 1 71.0 5.7 0.0002 28.0 4.5 53 76-137 12-64 (67)
12 2jt1_A PEFI protein; solution 69.4 13 0.00044 27.3 6.2 50 147-196 6-60 (77)
13 2dk5_A DNA-directed RNA polyme 66.9 11 0.00036 28.6 5.5 53 147-202 22-79 (91)
14 3r0a_A Putative transcriptiona 63.3 11 0.00039 29.3 5.2 87 77-188 29-122 (123)
15 1lva_A Selenocysteine-specific 63.2 17 0.00058 32.2 7.0 130 79-225 7-146 (258)
16 1qbj_A Protein (double-strande 61.8 14 0.00048 27.3 5.2 45 147-193 12-60 (81)
17 3cuq_A Vacuolar-sorting protei 60.9 27 0.00092 31.1 7.8 130 66-205 67-212 (234)
18 1qgp_A Protein (double strande 57.4 16 0.00054 26.6 4.7 45 148-194 17-65 (77)
19 2dk8_A DNA-directed RNA polyme 57.1 23 0.0008 26.5 5.7 60 74-141 14-74 (81)
20 2pi2_A Replication protein A 3 57.1 2.2 7.7E-05 38.4 0.0 43 147-191 209-256 (270)
21 2hzt_A Putative HTH-type trans 56.0 27 0.00092 26.2 6.1 51 149-205 18-73 (107)
22 1ub9_A Hypothetical protein PH 54.8 30 0.001 24.8 6.0 44 148-196 19-66 (100)
23 2fbh_A Transcriptional regulat 54.6 21 0.00073 27.2 5.5 57 149-210 41-103 (146)
24 2fsw_A PG_0823 protein; alpha- 54.6 28 0.00097 26.0 6.0 42 163-204 37-83 (107)
25 2rdp_A Putative transcriptiona 54.1 30 0.001 26.6 6.3 54 149-207 46-104 (150)
26 1w7p_D VPS36P, YLR417W; ESCRT- 53.3 39 0.0013 33.9 8.2 126 70-206 406-558 (566)
27 1z7u_A Hypothetical protein EF 53.0 31 0.0011 26.1 6.0 50 149-204 26-80 (112)
28 1p6r_A Penicillinase repressor 52.7 35 0.0012 24.1 6.0 42 148-194 12-61 (82)
29 3bja_A Transcriptional regulat 52.4 36 0.0012 25.6 6.4 55 149-208 37-96 (139)
30 1z91_A Organic hydroperoxide r 52.2 15 0.00052 28.3 4.2 72 149-225 44-122 (147)
31 3bpv_A Transcriptional regulat 51.8 26 0.00088 26.5 5.5 82 149-236 33-121 (138)
32 2heo_A Z-DNA binding protein 1 51.1 21 0.00072 24.9 4.4 41 147-191 12-56 (67)
33 3k0l_A Repressor protein; heli 50.3 45 0.0015 26.2 6.9 54 150-208 51-109 (162)
34 2bv6_A MGRA, HTH-type transcri 50.0 40 0.0014 25.6 6.4 53 150-207 42-99 (142)
35 3bdd_A Regulatory protein MARR 50.0 41 0.0014 25.4 6.4 82 149-236 35-124 (142)
36 1lj9_A Transcriptional regulat 49.5 43 0.0015 25.5 6.5 55 149-208 33-92 (144)
37 2eth_A Transcriptional regulat 48.9 43 0.0015 26.1 6.5 46 163-208 57-107 (154)
38 4hbl_A Transcriptional regulat 48.9 20 0.0007 27.9 4.5 82 149-237 45-131 (149)
39 3bj6_A Transcriptional regulat 48.5 35 0.0012 26.3 5.8 55 149-208 44-103 (152)
40 3cjn_A Transcriptional regulat 47.7 44 0.0015 26.1 6.4 54 150-208 57-115 (162)
41 1s3j_A YUSO protein; structura 47.3 39 0.0013 26.0 6.0 53 150-207 42-99 (155)
42 2v9v_A Selenocysteine-specific 46.9 22 0.00075 27.6 4.4 105 79-192 7-121 (135)
43 3mq0_A Transcriptional repress 46.2 26 0.00087 31.2 5.2 59 73-140 29-87 (275)
44 3s2w_A Transcriptional regulat 45.8 48 0.0016 25.9 6.3 54 150-208 55-113 (159)
45 4a5n_A Uncharacterized HTH-typ 45.4 46 0.0016 26.6 6.1 43 163-205 38-85 (131)
46 2gxg_A 146AA long hypothetical 45.1 53 0.0018 24.9 6.4 46 163-208 49-99 (146)
47 2nyx_A Probable transcriptiona 44.8 48 0.0016 26.3 6.3 54 150-208 50-108 (168)
48 1jgs_A Multiple antibiotic res 44.3 63 0.0022 24.2 6.7 54 150-208 39-97 (138)
49 3c6f_A YETF protein; uncharact 44.1 20 0.00068 29.8 3.9 106 116-248 7-129 (153)
50 3oio_A Transcriptional regulat 43.5 23 0.0008 26.6 3.9 29 74-106 7-35 (113)
51 2fbi_A Probable transcriptiona 43.5 38 0.0013 25.5 5.3 44 150-198 41-88 (142)
52 3cuo_A Uncharacterized HTH-typ 43.2 69 0.0023 22.7 6.4 53 148-207 27-83 (99)
53 2jt1_A PEFI protein; solution 43.0 36 0.0012 24.9 4.7 55 75-133 5-59 (77)
54 2nnn_A Probable transcriptiona 42.4 44 0.0015 25.1 5.5 55 149-208 42-101 (140)
55 3oop_A LIN2960 protein; protei 42.3 40 0.0014 25.7 5.2 83 149-237 41-130 (143)
56 1yyv_A Putative transcriptiona 42.1 47 0.0016 26.2 5.7 42 163-204 47-93 (131)
57 2xvc_A ESCRT-III, SSO0910; cel 41.8 60 0.0021 22.9 5.4 46 142-192 7-57 (59)
58 2a61_A Transcriptional regulat 41.8 44 0.0015 25.3 5.4 46 149-199 37-86 (145)
59 1oyi_A Double-stranded RNA-bin 41.5 24 0.00084 26.4 3.6 42 146-193 18-63 (82)
60 3mn2_A Probable ARAC family tr 41.4 24 0.00081 26.2 3.6 28 75-106 3-30 (108)
61 2k4b_A Transcriptional regulat 41.2 44 0.0015 25.4 5.2 47 142-193 31-86 (99)
62 3bro_A Transcriptional regulat 40.9 78 0.0027 23.7 6.7 84 149-236 38-128 (141)
63 2pex_A Transcriptional regulat 40.7 41 0.0014 26.0 5.1 44 150-198 52-99 (153)
64 1sfx_A Conserved hypothetical 40.6 60 0.0021 23.1 5.7 44 148-196 23-70 (109)
65 3eco_A MEPR; mutlidrug efflux 40.0 79 0.0027 23.8 6.6 57 149-208 35-96 (139)
66 3oou_A LIN2118 protein; protei 39.3 27 0.00091 26.0 3.6 29 74-106 5-33 (108)
67 2d1h_A ST1889, 109AA long hypo 39.2 34 0.0011 24.6 4.1 35 163-197 35-73 (109)
68 1xn7_A Hypothetical protein YH 39.1 25 0.00087 25.7 3.4 45 76-131 4-49 (78)
69 2hr3_A Probable transcriptiona 38.8 49 0.0017 25.2 5.3 56 149-208 39-99 (147)
70 1j5y_A Transcriptional regulat 38.7 26 0.00088 29.2 3.8 61 71-142 18-80 (187)
71 3e6m_A MARR family transcripti 38.3 35 0.0012 26.8 4.4 55 150-209 58-117 (161)
72 2k9s_A Arabinose operon regula 38.2 31 0.0011 25.6 3.8 29 74-106 3-32 (107)
73 1xmk_A Double-stranded RNA-spe 38.1 18 0.00063 26.7 2.4 53 73-134 10-62 (79)
74 1sd4_A Penicillinase repressor 37.9 75 0.0026 23.8 6.1 48 142-194 6-62 (126)
75 2qww_A Transcriptional regulat 37.2 52 0.0018 25.4 5.2 55 149-208 45-106 (154)
76 3u2r_A Regulatory protein MARR 36.1 56 0.0019 25.8 5.4 56 150-208 51-111 (168)
77 1lva_A Selenocysteine-specific 36.0 1.1E+02 0.0036 26.9 7.6 158 69-245 61-246 (258)
78 3f6o_A Probable transcriptiona 35.3 23 0.0008 27.0 2.8 84 147-244 20-109 (118)
79 3g3z_A NMB1585, transcriptiona 34.6 42 0.0014 25.7 4.2 54 150-208 36-94 (145)
80 3nqo_A MARR-family transcripti 34.0 96 0.0033 25.2 6.6 85 149-237 45-136 (189)
81 1mkm_A ICLR transcriptional re 32.8 60 0.002 28.0 5.3 59 73-140 7-65 (249)
82 3mkl_A HTH-type transcriptiona 32.5 39 0.0013 25.6 3.7 29 74-106 7-35 (120)
83 3b73_A PHIH1 repressor-like pr 31.5 48 0.0017 25.8 4.0 60 147-225 15-80 (111)
84 1okr_A MECI, methicillin resis 31.5 88 0.003 23.2 5.5 42 149-195 14-63 (123)
85 3cdh_A Transcriptional regulat 31.4 43 0.0015 26.0 3.8 45 163-207 56-105 (155)
86 3hsr_A HTH-type transcriptiona 30.8 48 0.0016 25.4 4.0 72 163-237 49-127 (140)
87 1s29_A LA protein; winged heli 30.5 31 0.001 26.3 2.6 43 92-136 42-84 (92)
88 3k2z_A LEXA repressor; winged 29.7 46 0.0016 27.7 3.9 51 73-132 8-58 (196)
89 3ech_A MEXR, multidrug resista 29.7 46 0.0016 25.4 3.7 44 150-198 42-89 (142)
90 2p5v_A Transcriptional regulat 29.4 73 0.0025 25.4 5.0 40 148-192 13-56 (162)
91 3lsg_A Two-component response 29.3 53 0.0018 24.0 3.8 28 75-106 3-31 (103)
92 2f2e_A PA1607; transcription f 29.3 1.2E+02 0.0042 23.9 6.3 48 150-204 29-80 (146)
93 2oqg_A Possible transcriptiona 29.2 1.4E+02 0.0046 21.8 6.2 53 148-208 24-80 (114)
94 2pjp_A Selenocysteine-specific 28.8 18 0.00063 28.1 1.1 86 93-188 19-108 (121)
95 2fu4_A Ferric uptake regulatio 28.2 54 0.0019 23.0 3.6 58 74-138 17-80 (83)
96 2kko_A Possible transcriptiona 28.2 93 0.0032 23.2 5.1 41 148-194 28-72 (108)
97 2k02_A Ferrous iron transport 28.2 31 0.0011 26.0 2.3 43 76-129 4-47 (87)
98 3f3x_A Transcriptional regulat 28.0 90 0.0031 23.7 5.1 52 150-207 42-98 (144)
99 2cg4_A Regulatory protein ASNC 27.8 70 0.0024 25.2 4.5 41 148-193 11-55 (152)
100 3lmm_A Uncharacterized protein 27.5 57 0.002 32.5 4.7 101 75-191 431-561 (583)
101 3f6v_A Possible transcriptiona 27.5 26 0.00089 28.5 1.9 70 146-224 59-132 (151)
102 3r0a_A Putative transcriptiona 27.5 1.2E+02 0.0042 23.1 5.9 54 149-207 30-91 (123)
103 1bl0_A Protein (multiple antib 27.5 42 0.0014 25.8 3.1 30 73-106 10-39 (129)
104 3fm5_A Transcriptional regulat 27.4 61 0.0021 24.9 4.1 46 150-199 44-93 (150)
105 3nrv_A Putative transcriptiona 27.1 59 0.002 24.8 3.9 54 149-207 44-102 (148)
106 3jth_A Transcription activator 26.6 1.4E+02 0.005 21.3 5.8 40 148-193 26-69 (98)
107 3deu_A Transcriptional regulat 26.2 86 0.003 24.9 4.9 47 163-209 67-118 (166)
108 2w25_A Probable transcriptiona 26.0 94 0.0032 24.3 5.0 42 148-194 10-55 (150)
109 2frh_A SARA, staphylococcal ac 25.9 59 0.002 24.8 3.7 55 149-206 41-100 (127)
110 1on2_A Transcriptional regulat 25.6 73 0.0025 24.5 4.2 40 149-193 12-55 (142)
111 3u1d_A Uncharacterized protein 25.6 1.9E+02 0.0066 23.8 6.9 87 146-239 30-134 (151)
112 2cfx_A HTH-type transcriptiona 24.9 1E+02 0.0035 24.0 5.0 40 148-192 8-51 (144)
113 1r1u_A CZRA, repressor protein 24.5 1.7E+02 0.0057 21.5 5.9 41 148-194 29-73 (106)
114 2pn6_A ST1022, 150AA long hypo 24.3 55 0.0019 25.6 3.2 40 148-192 6-49 (150)
115 2e1c_A Putative HTH-type trans 23.9 59 0.002 26.7 3.5 55 133-192 12-73 (171)
116 2fa5_A Transcriptional regulat 23.5 67 0.0023 24.9 3.6 34 163-196 62-99 (162)
117 2vxz_A Pyrsv_GP04; viral prote 23.3 1.3E+02 0.0045 25.3 5.4 61 67-138 4-64 (165)
118 1u5t_B Defective in vacuolar p 23.0 3.2E+02 0.011 22.6 11.8 113 73-193 14-153 (169)
119 3tl4_X Glutaminyl-tRNA synthet 22.7 80 0.0027 27.0 4.1 34 74-113 86-119 (187)
120 1u2w_A CADC repressor, cadmium 22.6 1.7E+02 0.0058 22.2 5.8 52 149-207 46-101 (122)
121 2fxa_A Protease production reg 22.3 98 0.0034 25.8 4.6 55 149-208 52-111 (207)
122 1ucr_A Protein DSVD; dissimila 22.1 67 0.0023 23.9 3.0 47 147-194 5-56 (78)
123 1uly_A Hypothetical protein PH 21.8 2E+02 0.0067 24.1 6.4 40 148-193 23-66 (192)
124 2jsc_A Transcriptional regulat 21.7 2.4E+02 0.0081 21.2 6.4 41 148-194 24-68 (118)
125 2p4w_A Transcriptional regulat 21.6 1.5E+02 0.0052 25.0 5.8 52 148-205 18-75 (202)
126 3r4k_A Transcriptional regulat 21.6 45 0.0015 29.2 2.4 58 75-141 7-65 (260)
127 2dbb_A Putative HTH-type trans 21.4 1.1E+02 0.0038 23.9 4.5 40 148-192 12-55 (151)
128 2xrn_A HTH-type transcriptiona 21.3 91 0.0031 26.8 4.3 58 74-140 6-64 (241)
129 3lap_A Arginine repressor; arg 21.0 1.5E+02 0.0051 24.9 5.5 53 142-209 32-85 (170)
130 3boq_A Transcriptional regulat 20.9 87 0.003 24.2 3.8 47 163-209 61-112 (160)
131 3c18_A Nucleotidyltransferase- 20.9 71 0.0024 29.3 3.6 49 76-131 224-272 (290)
132 2vn2_A DNAD, chromosome replic 20.7 79 0.0027 24.6 3.5 59 138-196 24-87 (128)
133 1oyi_A Double-stranded RNA-bin 20.6 62 0.0021 24.2 2.6 50 71-131 14-63 (82)
134 1r1t_A Transcriptional repress 20.5 1.9E+02 0.0065 22.1 5.7 40 149-194 50-93 (122)
135 2o03_A Probable zinc uptake re 20.5 1.3E+02 0.0043 23.3 4.7 60 73-139 10-74 (131)
136 1jjr_A KU70, thyroid autoantig 20.1 1E+02 0.0035 25.6 4.2 34 214-247 48-81 (151)
No 1
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=99.95 E-value=1.6e-28 Score=188.27 Aligned_cols=81 Identities=69% Similarity=1.075 Sum_probs=78.1
Q ss_pred cCCCCcchhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEeccCCC
Q psy14236 64 SMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFK 143 (290)
Q Consensus 64 ~~tg~~~~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP~y~ 143 (290)
+++|+|+|+||||++||+|||+|||+|+++|+|++||+++|+++|++...++||+.|||++||||+|. ||+|+|||+|+
T Consensus 1 ~~~~~s~~~f~~lakiV~~mK~rh~~g~~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI~~~-dgkf~fkP~y~ 79 (81)
T 1d8j_A 1 ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DGKYAFKPKYN 79 (81)
T ss_dssp CTTSCSCTTHHHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEEC-SSSEEECCTTT
T ss_pred CCCcccccceehHHHHHHHHHHhhccCCCCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCceEEe-CCceeccCCcC
Confidence 36899999999999999999999999999999999999999999999999999977999999999999 99999999999
Q ss_pred CC
Q psy14236 144 IK 145 (290)
Q Consensus 144 Ik 145 (290)
||
T Consensus 80 ik 81 (81)
T 1d8j_A 80 VR 81 (81)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 2
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=89.08 E-value=0.85 Score=34.54 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhhhhh-----HHHHHHHhhhCCcEEEEecC
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRESLPH-----CEKALKHLSLQNEIIYVTRP 196 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~p~-----~~~~I~~Le~e~~Ilvv~~~ 196 (290)
.+.+|++++.++ .||+-++|....|+ ...+|+.|-.+++|-++...
T Consensus 16 e~~IL~l~~~~P----~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~ 66 (81)
T 2dk8_A 16 ENRIIELCHQFP----HGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSN 66 (81)
T ss_dssp HHHHHHHHHHCS----SCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECS
T ss_pred HHHHHHHHHhCC----CCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 456999999986 79999999999999 55889999999999988543
No 3
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=84.15 E-value=2.4 Score=31.68 Aligned_cols=51 Identities=6% Similarity=0.057 Sum_probs=39.7
Q ss_pred CHHHHHHHHHhcccCCCCccchhhhHhhh-----hhHHHHHHHhhhCCcEEEEecCCCCceEEEe
Q psy14236 146 DRKGLLKLLKQHDLKGIGGILLDDVRESL-----PHCEKALKHLSLQNEIIYVTRPADKRKVMFY 205 (290)
Q Consensus 146 ~k~~LL~lL~~~~q~~~~GI~v~dLkD~~-----p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ 205 (290)
.++.+|.+|+++ |+++..+|.+.. ++|-..|..|+++|.|... ..+.| +|.
T Consensus 12 ~~~~IL~~Lk~~-----g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~--~~gRP--~w~ 67 (79)
T 1xmk_A 12 IKEKICDYLFNV-----SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ--GTTPP--IWH 67 (79)
T ss_dssp HHHHHHHHHHHT-----CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE--CSSSC--EEE
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec--CCCCC--CeE
Confidence 468899999996 789999988765 3788999999999998833 22445 664
No 4
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.13 E-value=3.6 Score=29.68 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCCceEEEecCC
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDK 208 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~ 208 (290)
...+|.+|... +++++.||.+. -+.+-..|+.|+++|-|.......+....+..++.
T Consensus 2 r~~Il~~L~~~-----~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 2 KNEILEFLNRH-----NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHHS-----CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 46789999874 57999998885 46688999999999987654443344444445544
No 5
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=80.85 E-value=0.99 Score=33.50 Aligned_cols=58 Identities=10% Similarity=0.290 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceE--EeeCCeEEeccC
Q psy14236 74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIE--VIEGNKYIFKPV 141 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~--~~p~~~f~yKP~ 141 (290)
..|...|+|+|.+ +-+.++||..++++ ....-. .-+ +.|..+-+|. +|..|+|-|...
T Consensus 7 ~ll~~Fi~yIk~~------Kvv~LedLA~~F~l-~t~~~i-~RI--~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 7 GFLTEFINYIKKS------KVVLLEDLAFQMGL-RTQDAI-NRI--QDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp CHHHHHHHHHHHC------SEECHHHHHHHHCS-CHHHHH-HHH--HHHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHHHHHHHHHHc------CeeeHHHHHHHhCC-ChHHHH-HHH--HHHHHCCCeEEEEeCCCCEEEecH
Confidence 3478889999996 79999999999997 433333 334 4677777765 443699999765
No 6
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=77.37 E-value=0.86 Score=38.59 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcccCCCCccchhh----hHhhhhhHHHHHHHhhhCCcEEEEecCCCCceEEEecCCCCCCCCCHHHHHHh
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDD----VRESLPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLW 222 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~d----LkD~~p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~~~~~~VD~EFk~lW 222 (290)
+.++|++|+ + |.+++.. |-=||..+.-.|.-||+||-|.-|... +.+++-.++..+...|++=|+++|
T Consensus 13 k~~ILE~Lk-~-----G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~G--K~ayw~L~~s~y~~kV~dilrel~ 84 (165)
T 2vxz_A 13 LRDILALLA-D-----GCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFG--NVALVCLSMDQYRQLVDGMIREVE 84 (165)
T ss_dssp HHHHHHHHT-T-----CCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEET--TEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-h-----CCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEc--cEEEEEecHHHHHHHHHHHHHHHH
Confidence 578999999 4 7888765 455899999999999999999877543 444444444444446777777777
Q ss_pred hhc
Q psy14236 223 RSI 225 (290)
Q Consensus 223 ~~v 225 (290)
+-+
T Consensus 85 ~~l 87 (165)
T 2vxz_A 85 RLV 87 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 7
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=75.52 E-value=18 Score=31.69 Aligned_cols=116 Identities=8% Similarity=0.091 Sum_probs=75.5
Q ss_pred CcchhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc----CCCCchhHHHHhHHhhhcCCc----eEEee--CCeEE
Q psy14236 68 SSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ----LDVGNKVKIWLSTEALQNNPK----IEVIE--GNKYI 137 (290)
Q Consensus 68 ~~~~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~----~di~~~~~~~L~~e~L~~npK----I~~~p--~~~f~ 137 (290)
.|.+.+-.-..|++++.... ...+.=+++.|+...++- --|+++. ++ .|...-+. +.+.. .|.+.
T Consensus 70 ~~~f~~ELa~qi~e~c~~~~-~~~GG~I~L~dl~~~~nraRG~~lVSp~D--l~--~A~~~l~~Lg~~~~l~~~~sg~~v 144 (218)
T 3cuq_B 70 GTQYHMQLAKQLAGILQVPL-EERGGIMSLTEVYCLVNRARGMELLSPED--LV--NACKMLEALKLPLRLRVFDSGVMV 144 (218)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-HHTTSEEEHHHHHHHHHHTCSSSCCCHHH--HH--HHHHTTTTTTCSEEEEECTTSBEE
T ss_pred ccHHHHHHHHHHHHHHHHHH-HhCCCeEEHHHHHHHHHHHcCCCCCCHHH--HH--HHHHHHHHcCCCEEEEEECCCcEE
Confidence 45555555556777765431 111357999999887753 1255553 33 24432222 55554 46643
Q ss_pred e-ccCCCC-CCHHHHHHHHHhcccCCCCccchhhhHh--hhhh--HHHHHHHhhhCCcEEEE
Q psy14236 138 F-KPVFKI-KDRKGLLKLLKQHDLKGIGGILLDDVRE--SLPH--CEKALKHLSLQNEIIYV 193 (290)
Q Consensus 138 y-KP~y~I-k~k~~LL~lL~~~~q~~~~GI~v~dLkD--~~p~--~~~~I~~Le~e~~Ilvv 193 (290)
- -+.+.. .+...+|++++.. ||+++.+|.+ +|+- |.+.|+.++++|-+++=
T Consensus 145 vqs~~~~~~~~~~~il~~~~~~-----g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 145 IELQSHKEEEMVASALETVSEK-----GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp EEETTCCGGGGHHHHHHHHHHT-----SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred EEcCCCchHHHHHHHHHHHHHC-----CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3 344555 6788899999874 8999999988 6777 88999999999988854
No 8
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=73.81 E-value=4.4 Score=30.77 Aligned_cols=43 Identities=12% Similarity=0.281 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEe
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~ 194 (290)
-.++|++|+.+ |.++++||.+-+ ..+..+|+.|+++|.|.-++
T Consensus 4 L~~Il~~L~~~-----g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 4 LMEVRDMLALQ-----GRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp THHHHHHHHHS-----CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHc-----CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 46899999986 789999998865 56889999999999888775
No 9
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=73.01 E-value=4.9 Score=29.70 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEE
Q psy14236 146 DRKGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 146 ~k~~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv 193 (290)
+-.++|++|+.+ +-++++||.+-+ ..+..+|+.|+++|.|.-+
T Consensus 3 ~L~~Il~~L~~~-----g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 3 SLIQVRDLLALR-----GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CHHHHHHHHHHS-----CSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHHHHHc-----CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 346899999986 789999998866 4588999999999988766
No 10
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=72.50 E-value=41 Score=29.88 Aligned_cols=120 Identities=13% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCCCcchhHHHHHHHHHHHhhhc-CCCCCCCcCHHHHHHhhcc-CCCCchhHHHHh-HHhhhcCCceEEee-CCeEEecc
Q psy14236 65 MSGSSQYKFGVLAKIVKHMKQRH-QDGDDHPLTIDEILDETNQ-LDVGNKVKIWLS-TEALQNNPKIEVIE-GNKYIFKP 140 (290)
Q Consensus 65 ~tg~~~~~~t~l~~iV~~LK~r~-~~g~~~pltl~eIl~~l~~-~di~~~~~~~L~-~e~L~~npKI~~~p-~~~f~yKP 140 (290)
.-|+|.+.+..=..||+...... .+ +.-++++|+...++- ..|+++. +++ -..|+.-....+.+ .|++--+.
T Consensus 85 ~lg~gdfy~eLavqIvEvC~~tr~~n--GGli~l~el~~~~~r~~~IS~dD--i~rAik~L~~L~gf~v~~v~g~~~vqs 160 (233)
T 1u5t_A 85 LFTVNDFYYEVCLKVIEICRQTKDMN--GGVISFQELEKVHFRKLNVGLDD--LEKSIDMLKSLECFEIFQIRGKKFLRS 160 (233)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHTTTS--SSCEEHHHHHHTTTTTTTCCHHH--HHHHHHHHTTTCCCCEEEETTEEEECC
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHhc--CCeeEHHHHHHHHHhhcCCCHHH--HHHHHHHhhhccCeEEEEECCEEEEEe
Confidence 34677777777778888876543 33 368999999888763 2455554 221 01222223444443 46553333
Q ss_pred C-C-CCCCHHHHHHHHHhcccCCCCccchhhhHh--hhhh--HHHHHHHhhhCCcEEEE
Q psy14236 141 V-F-KIKDRKGLLKLLKQHDLKGIGGILLDDVRE--SLPH--CEKALKHLSLQNEIIYV 193 (290)
Q Consensus 141 ~-y-~Ik~k~~LL~lL~~~~q~~~~GI~v~dLkD--~~p~--~~~~I~~Le~e~~Ilvv 193 (290)
. . -=.+-..+|++++. .|++++++|.+ +|+. |..+|+.|+++|-+|+=
T Consensus 161 vp~el~~D~~~vLe~a~~-----~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD 214 (233)
T 1u5t_A 161 VPNELTSDQTKILEICSI-----LGYSSISLLKANLGWEAVRSKSALDEMVANGLLWID 214 (233)
T ss_dssp SSSCCCTTHHHHHHTTTT-----TSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEE
T ss_pred CCCccchHHHHHHHHHHh-----cCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3 2 33567777888764 38999999998 6755 78999999999999843
No 11
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=70.96 E-value=5.7 Score=28.01 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEE
Q psy14236 76 LAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYI 137 (290)
Q Consensus 76 l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~ 137 (290)
-..|+++|... ..|+++.||...+++ ..+.-. ..+ ..|+..--|.....|.|.
T Consensus 12 ~~~IL~~L~~~-----~~~~s~~eLA~~lgl-sr~tv~-~~l--~~L~~~G~I~~~~~G~y~ 64 (67)
T 2heo_A 12 EQKILQVLSDD-----GGPVAIFQLVKKCQV-PKKTLN-QVL--YRLKKEDRVSSPSPKYWS 64 (67)
T ss_dssp HHHHHHHHHHH-----CSCEEHHHHHHHHCS-CHHHHH-HHH--HHHHHTTSEEEEETTEEE
T ss_pred HHHHHHHHHHc-----CCCcCHHHHHHHHCc-CHHHHH-HHH--HHHHHCCcEecCCCceEe
Confidence 34689999875 578999999999987 332222 344 578877778776577765
No 12
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=69.38 E-value=13 Score=27.35 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcccCC-CCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecC
Q psy14236 147 RKGLLKLLKQHDLKG-IGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRP 196 (290)
Q Consensus 147 k~~LL~lL~~~~q~~-~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~ 196 (290)
.+++|++|+.+-... .+.+++.||.+.+ ..|..+|+.|+++|.|.-+...
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 468999999961110 1568899998865 5688999999999998766533
No 13
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=66.93 E-value=11 Score=28.58 Aligned_cols=53 Identities=32% Similarity=0.360 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCC-CCceE
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPA-DKRKV 202 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~-~~~ri 202 (290)
.--+|.+|... +..||..+||.+.. +.+-..|+.||+.|-|.-+++.. ++.++
T Consensus 22 q~~Vl~~I~~~---g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKv 79 (91)
T 2dk5_A 22 EKLVYQIIEDA---GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKV 79 (91)
T ss_dssp HHHHHHHHHHH---CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCE
T ss_pred HHHHHHHHHHc---CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEE
Confidence 34567778773 33699999999875 66889999999999998887776 44443
No 14
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=63.28 E-value=11 Score=29.30 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=53.1
Q ss_pred HHHHHHHhhhcCCCCCCC-cCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEee---C-C--eEEeccCCCCCCHHH
Q psy14236 77 AKIVKHMKQRHQDGDDHP-LTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIE---G-N--KYIFKPVFKIKDRKG 149 (290)
Q Consensus 77 ~~iV~~LK~r~~~g~~~p-ltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p---~-~--~f~yKP~y~Ik~k~~ 149 (290)
..|+.+|... ..| +|..||.+.+++ +.+.-. ..| +.|...-=|.-.+ | | .|.|.+ ...++
T Consensus 29 ~~il~~L~~~-----~~~~~t~~eLa~~l~~-s~sTV~-r~L--~~L~~~GlV~r~~~~~d~~~~~~~y~~----~~~~~ 95 (123)
T 3r0a_A 29 LNVMKSFLNE-----PDRWIDTDALSKSLKL-DVSTVQ-RSV--KKLHEKEILQRSQQNLDGGGYVYIYKI----YSKNQ 95 (123)
T ss_dssp HHHHHHHHHS-----TTCCEEHHHHHHHHTS-CHHHHH-HHH--HHHHHTTSEEEEEEECTTSCEEEEEEE----CCHHH
T ss_pred HHHHHHHHHC-----CCCCcCHHHHHHHHCc-CHHHHH-HHH--HHHHHCCCEEeeCCccCCCcceEEEec----CCHHH
Confidence 4577777765 467 999999999986 444433 344 5788777776543 2 3 456655 34777
Q ss_pred HHHHHHhcccCCCCccchhhhHhhhhhHHHHHHHhhhCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQN 188 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~p~~~~~I~~Le~e~ 188 (290)
+...++.. +.+....+.+.|++++++|
T Consensus 96 ~~~~i~~~------------~~~~~~~~~~~l~~~~~~~ 122 (123)
T 3r0a_A 96 IRNIIQKI------------VQSWADRLGQELKEWENGG 122 (123)
T ss_dssp HHHHHHHH------------HHHHHHHHHHTTTTTCC--
T ss_pred HHHHHHHH------------HHHHHHHHHHHHHHHhccC
Confidence 77777663 3333334555566665554
No 15
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=63.19 E-value=17 Score=32.16 Aligned_cols=130 Identities=9% Similarity=0.136 Sum_probs=79.9
Q ss_pred HHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEee--CCeEEeccCCCCCCHHHHHHHHHh
Q psy14236 79 IVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIE--GNKYIFKPVFKIKDRKGLLKLLKQ 156 (290)
Q Consensus 79 iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p--~~~f~yKP~y~Ik~k~~LL~lL~~ 156 (290)
+-.||... ...+..++|...+++ ....- ...| +.|....+|.... ++.|.+-+.+--.=.+.|+..|..
T Consensus 7 l~~~L~~~-----~~~~~~~~l~~~~~l-~~~~l-~~~l--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 77 (258)
T 1lva_A 7 LAQIIQEH-----REGLDWQEAATRASL-SLEET-RKLL--QSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEE 77 (258)
T ss_dssp HHHHHHTC-----TTCEEHHHHHHHHTC-CHHHH-HHHH--HHHHHTTSEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCCHHHHHHHhCC-CHHHH-HHHH--HHHHhCCCEEEeccCCccEEEcHHHHHHHHHHHHHHHHH
Confidence 44556553 344556999888876 21111 1234 4666677765553 234445555544456777777775
Q ss_pred ccc--CCCCccchhhhHhhh-h-----hHHHHHHHhhhCCcEEEEecCCCCceEEEecCCCCCCCCCHHHHHHhhhc
Q psy14236 157 HDL--KGIGGILLDDVRESL-P-----HCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSI 225 (290)
Q Consensus 157 ~~q--~~~~GI~v~dLkD~~-p-----~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~~~~~~VD~EFk~lW~~v 225 (290)
+++ +-..||+..+|+..+ | -+...|++|.++|.|..- .. |+--++.....+++...+|..|
T Consensus 78 ~H~~~P~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~-~~-------~v~l~~h~~~~~~~~~~~~~~i 146 (258)
T 1lva_A 78 FHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA-AN-------TVALAGFTPSFSETQKKLLKDL 146 (258)
T ss_dssp HHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE-TT-------EEEETTCCCCCCHHHHHHHHHH
T ss_pred HHHhCCCccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEec-CC-------EEeCCCCccCCCHHHHHHHHHH
Confidence 321 244799999999876 3 255677899888886533 32 3333565667899999999764
No 16
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=61.80 E-value=14 Score=27.32 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEE
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv 193 (290)
...||.+|+.. ....++++.+|.+.. ..|...|..|+++|.|..+
T Consensus 12 ~~~IL~~L~~~--~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 12 EQRILKFLEEL--GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHH--CTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc--CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 35699999985 122379999987764 4789999999999998766
No 17
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=60.92 E-value=27 Score=31.14 Aligned_cols=130 Identities=16% Similarity=0.310 Sum_probs=77.0
Q ss_pred CCCcchhHHHHHHHHHHHhh-hcCCCCCCCcCHHHHHHhhcc------CCCCchhHHHHh-HHhhhc-CCceEEee-CCe
Q psy14236 66 SGSSQYKFGVLAKIVKHMKQ-RHQDGDDHPLTIDEILDETNQ------LDVGNKVKIWLS-TEALQN-NPKIEVIE-GNK 135 (290)
Q Consensus 66 tg~~~~~~t~l~~iV~~LK~-r~~~g~~~pltl~eIl~~l~~------~di~~~~~~~L~-~e~L~~-npKI~~~p-~~~ 135 (290)
-|+|.+.+..=..||+.... |+.+| .-++++|+...++- ..|+++. +++ -..|+. .+-+.+.+ +|+
T Consensus 67 lG~gdfy~eLavqIvEvC~~tr~~nG--Gli~L~el~~~~~r~Rg~~~~~IS~dD--i~rAik~L~~LG~g~~v~~~~g~ 142 (234)
T 3cuq_A 67 LGVGDFYYELGVQIIEVCLALKHRNG--GLITLEELHQQVLKGRGKFAQDVSQDD--LIRAIKKLKALGTGFGIIPVGGT 142 (234)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHS--SEEEHHHHHHHHHHTTTTCCSSCCHHH--HHHHHHHHGGGBTTCEEEEETTE
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhcC--CeeEHHHHHHHHHHhcCCccCccCHHH--HHHHHHHHHhcCCCeEEEEECCE
Confidence 36666666656667776543 32333 67888888887753 2555554 221 012222 13355554 465
Q ss_pred EEeccCC-CC-CCHHHHHHHHHhcccCCCCccchhhhHh--hhhh--HHHHHHHhhhCCcEEEEecCCCCceEEEe
Q psy14236 136 YIFKPVF-KI-KDRKGLLKLLKQHDLKGIGGILLDDVRE--SLPH--CEKALKHLSLQNEIIYVTRPADKRKVMFY 205 (290)
Q Consensus 136 f~yKP~y-~I-k~k~~LL~lL~~~~q~~~~GI~v~dLkD--~~p~--~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ 205 (290)
+--+... .+ .+-..+|++++. .|+|++++|.+ +|.. |..+|+.|+++|-+|+= ....+....||
T Consensus 143 ~~VqSvp~el~~D~~~vLela~~-----~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD-~q~~ge~~Yw~ 212 (234)
T 3cuq_A 143 YLIQSVPAELNMDHTVVLQLAEK-----NGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLD-LQAPGEAHYWL 212 (234)
T ss_dssp EEEECSCCCCCHHHHHHHHHHTT-----TSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEE-SSSSSSCEEEC
T ss_pred EEEEeCCCccchHHHHHHHHHHh-----cCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe-CCCCCcceeec
Confidence 5444443 32 344556777764 38999999998 5655 77899999999998843 32234454543
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=57.41 E-value=16 Score=26.55 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEe
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~ 194 (290)
..+|.+|+... ..+++++.+|.+. ...|...|..|+++|.|..+.
T Consensus 17 ~~IL~~L~~~~--~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELG--EGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHC--SSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcC--CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 67899999952 1348999998776 458999999999999987653
No 19
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=57.12 E-value=23 Score=26.52 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEee-CCeEEeccC
Q psy14236 74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIE-GNKYIFKPV 141 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p-~~~f~yKP~ 141 (290)
..-..|+++++++ ...++=++|..++. +++........+. |-.--+|++-. .|++.||.+
T Consensus 14 ~ie~~IL~l~~~~-----P~GItd~~L~~~~p--~~~~~~r~~aIN~-LL~~gkiel~K~~~~liYr~k 74 (81)
T 2dk8_A 14 EIENRIIELCHQF-----PHGITDQVIQNEMP--HIEAQQRAVAINR-LLSMGQLDLLRSNTGLLYRIK 74 (81)
T ss_dssp HHHHHHHHHHHHC-----SSCEEHHHHHHHCT--TSCHHHHHHHHHH-HHHHTSEEEEECSSSEEEEEC
T ss_pred HHHHHHHHHHHhC-----CCCCCHHHHHHHCC--CCCHHHHHHHHHH-HHHcCCeEEEecCCeEEEEec
Confidence 4566799999998 68899999999885 5555544333434 44456777654 477777755
No 20
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=57.06 E-value=2.2 Score=38.42 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhhhh-----hHHHHHHHhhhCCcEE
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRESLP-----HCEKALKHLSLQNEII 191 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~p-----~~~~~I~~Le~e~~Il 191 (290)
...+|++|+.+. ...||.+++|....+ .+.++|++|..+|.|+
T Consensus 209 ~~~Vl~~i~~~~--~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IY 256 (270)
T 2pi2_A 209 QNQVLNLIKACP--RPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY 256 (270)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHhCC--CccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEe
Confidence 467999999974 368999999998774 5778999999999997
No 21
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=56.04 E-value=27 Score=26.22 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhhhh-----HHHHHHHhhhCCcEEEEecCCCCceEEEe
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESLPH-----CEKALKHLSLQNEIIYVTRPADKRKVMFY 205 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~p~-----~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ 205 (290)
.+|..|.. +++++.||.+..++ +-..|+.|++.|-|--...+.|..++.|.
T Consensus 18 ~IL~~L~~------~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~ 73 (107)
T 2hzt_A 18 VILXHLTH------GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYE 73 (107)
T ss_dssp HHHHHHTT------CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred HHHHHHHh------CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEE
Confidence 35666642 68999999988744 66789999999988765555454444443
No 22
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=54.76 E-value=30 Score=24.79 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=33.2
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecC
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRP 196 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~ 196 (290)
-.+|.+|..+ +++++.+|.+. .+.+-..|+.|++.|-|......
T Consensus 19 ~~iL~~L~~~-----~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 19 LGIMIFLLPR-----RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HHHHHHHHHH-----SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHhc-----CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3467777653 58899998874 56788999999999988755444
No 23
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.64 E-value=21 Score=27.17 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=39.2
Q ss_pred HHHHHH-HhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCC-CceEEEecCCCC
Q psy14236 149 GLLKLL-KQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPAD-KRKVMFYNDKSA 210 (290)
Q Consensus 149 ~LL~lL-~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~-~~rivf~ND~~~ 210 (290)
.+|.+| ..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.| ....++..+.+.
T Consensus 41 ~iL~~l~~~~-----~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~ 103 (146)
T 2fbh_A 41 LVLLHLARHR-----DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKAD 103 (146)
T ss_dssp HHHHHHHHCS-----SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHH
T ss_pred HHHHHHHHcC-----CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHH
Confidence 456666 432 678888888764 578899999999998876655543 345555555543
No 24
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=54.60 E-value=28 Score=26.04 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=30.7
Q ss_pred CccchhhhHhhhh-----hHHHHHHHhhhCCcEEEEecCCCCceEEE
Q psy14236 163 GGILLDDVRESLP-----HCEKALKHLSLQNEIIYVTRPADKRKVMF 204 (290)
Q Consensus 163 ~GI~v~dLkD~~p-----~~~~~I~~Le~e~~Ilvv~~~~~~~rivf 204 (290)
+++++.||.+..+ .+-..|+.|++.|-|--...+.+..++.|
T Consensus 37 ~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 6789999998775 46788999999998876555544444443
No 25
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.10 E-value=30 Score=26.55 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYND 207 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND 207 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+ ...|+..+
T Consensus 46 ~iL~~l~~~-----~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 104 (150)
T 2rdp_A 46 VALQWLLEE-----GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLE 104 (150)
T ss_dssp HHHHHHHHH-----CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECH
T ss_pred HHHHHHHHc-----CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECH
Confidence 356666654 578888887764 6788999999999998877666443 34444433
No 26
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=53.30 E-value=39 Score=33.90 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHHhhhc---CCC-CCCCcCHHHHHHhhc------cCCCCchhH----HHHhHHhhhcCCc-eEEeeCC
Q psy14236 70 QYKFGVLAKIVKHMKQRH---QDG-DDHPLTIDEILDETN------QLDVGNKVK----IWLSTEALQNNPK-IEVIEGN 134 (290)
Q Consensus 70 ~~~~t~l~~iV~~LK~r~---~~g-~~~pltl~eIl~~l~------~~di~~~~~----~~L~~e~L~~npK-I~~~p~~ 134 (290)
.+..-.-..|++|+.... +.. .+.-+++.|+...++ .-.|+++.. ..| +.|...-+ |.....|
T Consensus 406 ~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g~elISp~Dll~A~~~l--e~Lg~~~~~L~~~~sg 483 (566)
T 1w7p_D 406 LFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERF--EHLGLNELKLVKVNKR 483 (566)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTTTCCCCHHHHHHHHTTG--GGGTCTTCEEEECSSS
T ss_pred HHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCCCCccCHHHHHHHHHHH--HHcCCCeEEEEEECCE
Confidence 333334456788887642 111 245688888887663 224444431 122 33444444 4444356
Q ss_pred eEEeccC-CCCCCHHHHHHHHHhcccCCCCccchhhhHhhhh-----------hHHHHHHHhhhCCcEEEEecCCCCceE
Q psy14236 135 KYIFKPV-FKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLP-----------HCEKALKHLSLQNEIIYVTRPADKRKV 202 (290)
Q Consensus 135 ~f~yKP~-y~Ik~k~~LL~lL~~~~q~~~~GI~v~dLkD~~p-----------~~~~~I~~Le~e~~Ilvv~~~~~~~ri 202 (290)
.+.- +. +.=.+...+|++++. .+|+++.+|.+.+- -+.+.|+.++++|.+++=... ..+
T Consensus 484 vlVv-s~~~~~~~~~~il~l~~~-----~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rDd~~---~G~ 554 (566)
T 1w7p_D 484 ILCV-TSEKFDVVKEKLVDLIGD-----NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQL---SGI 554 (566)
T ss_dssp CEEE-ESSCHHHHHHHHHHHHTT-----STTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEEEET---TEE
T ss_pred EEEE-cCCCchHHHHHHHHHHHh-----cCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEECCC---Cce
Confidence 6664 33 212556777887765 38999999997555 588999999999998854222 245
Q ss_pred EEec
Q psy14236 203 MFYN 206 (290)
Q Consensus 203 vf~N 206 (290)
.||-
T Consensus 555 ~yyp 558 (566)
T 1w7p_D 555 YYYK 558 (566)
T ss_dssp EEEE
T ss_pred EEeh
Confidence 5654
No 27
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=52.96 E-value=31 Score=26.12 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=35.9
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhhhh-----HHHHHHHhhhCCcEEEEecCCCCceEEE
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESLPH-----CEKALKHLSLQNEIIYVTRPADKRKVMF 204 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~p~-----~~~~I~~Le~e~~Ilvv~~~~~~~rivf 204 (290)
.+|.+|.. +++++.||.+..|+ +-..|+.|++.|-|-....+.|..++.|
T Consensus 26 ~IL~~L~~------~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 26 SLMDELFQ------GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp HHHHHHHH------SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred HHHHHHHh------CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 46667753 68999999998843 6688999999998876655544444443
No 28
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=52.67 E-value=35 Score=24.09 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhhh--------hhHHHHHHHhhhCCcEEEEe
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRESL--------PHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~~--------p~~~~~I~~Le~e~~Ilvv~ 194 (290)
..+|.+|... +++++.||.+.. +.+-..|+.|++.|-|...+
T Consensus 12 ~~vL~~L~~~-----~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWKH-----SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHTS-----SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcC-----CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 3578888763 689999998865 56889999999999887554
No 29
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=52.39 E-value=36 Score=25.58 Aligned_cols=55 Identities=13% Similarity=0.422 Sum_probs=38.2
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+ ...++..+.
T Consensus 37 ~iL~~l~~~-----~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~ 96 (139)
T 3bja_A 37 GVIQVLAKS-----GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKK 96 (139)
T ss_dssp HHHHHHHHS-----CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH
T ss_pred HHHHHHHHc-----CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHH
Confidence 356666553 578888887764 5789999999999988877666544 444444444
No 30
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=52.23 E-value=15 Score=28.26 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=45.0
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCC-CceEEEecCCCCC--CCCCHHHHHH
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPAD-KRKVMFYNDKSAQ--LDLDEDFQKL 221 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~-~~rivf~ND~~~~--~~VD~EFk~l 221 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.| ....|...+.+.. ..+.+.+..+
T Consensus 44 ~iL~~l~~~-----~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~~~~~~~ 118 (147)
T 1z91_A 44 LALLLLWEH-----ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGTI 118 (147)
T ss_dssp HHHHHHHHH-----SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTTTHHHHH
T ss_pred HHHHHHHHC-----CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHHHHHHHHH
Confidence 345556553 477788777754 578899999999988775544433 3455555544322 3355555666
Q ss_pred hhhc
Q psy14236 222 WRSI 225 (290)
Q Consensus 222 W~~v 225 (290)
...+
T Consensus 119 ~~~~ 122 (147)
T 1z91_A 119 LGLS 122 (147)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6555
No 31
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=51.75 E-value=26 Score=26.48 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=48.6
Q ss_pred HHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCCCC--CCCCHHHHHH
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKSAQ--LDLDEDFQKL 221 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~~~--~~VD~EFk~l 221 (290)
.+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|.....+.|+ ...++..+.+.. ..+.+.+...
T Consensus 33 ~iL~~l~~~-----~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~ 107 (138)
T 3bpv_A 33 ACLLRIHRE-----PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVEERW 107 (138)
T ss_dssp HHHHHHHHS-----TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHHHHHHHH
Confidence 456667663 68888888874 46788999999999988876655433 334444443221 1233334444
Q ss_pred hhhcccCCCChhhHH
Q psy14236 222 WRSISVDGMDNDKIK 236 (290)
Q Consensus 222 W~~v~VP~~de~di~ 236 (290)
+..+ +.+.++++++
T Consensus 108 ~~~~-~~~l~~~e~~ 121 (138)
T 3bpv_A 108 EDLL-FRDFTEDERK 121 (138)
T ss_dssp HHHH-TTTSCHHHHH
T ss_pred HHHH-HhcCCHHHHH
Confidence 4443 3334554543
No 32
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=51.14 E-value=21 Score=24.95 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEE
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEII 191 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Il 191 (290)
...+|++|.... ..+++.||.+.. +.+...|+.|+++|-|.
T Consensus 12 ~~~IL~~L~~~~----~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 12 EQKILQVLSDDG----GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHC----SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcC----CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 568999998741 468999988854 56889999999999864
No 33
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=50.28 E-value=45 Score=26.22 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|.+|..+ +|+++.||.+.+ +.+-..|+.|++.|-|.....+.|+ ...|..-+.
T Consensus 51 iL~~l~~~-----~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 109 (162)
T 3k0l_A 51 ALSVLAAK-----PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPS 109 (162)
T ss_dssp HHHHHHHC-----TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHH
T ss_pred HHHHHHHC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHh
Confidence 45555553 577888877744 6688999999999999877766544 444554443
No 34
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=50.01 E-value=40 Score=25.63 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCCc-eEEEecC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADKR-KVMFYND 207 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~~-rivf~ND 207 (290)
+|.+|..+ +|+++.+|.+. -+.+-..|+.|++.|-|.....+.|+. ..+...+
T Consensus 42 iL~~l~~~-----~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~ 99 (142)
T 2bv6_A 42 VLTILWDE-----SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTD 99 (142)
T ss_dssp HHHHHHHS-----SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECH
T ss_pred HHHHHHHc-----CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEECh
Confidence 45555543 46777777664 577899999999999988776654443 3444333
No 35
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=49.95 E-value=41 Score=25.39 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=51.5
Q ss_pred HHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCCC--C-CCCCHHHHH
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKSA--Q-LDLDEDFQK 220 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~~--~-~~VD~EFk~ 220 (290)
.+|.+|..+ +|+++.+|.+. -+.+-..|+.|++.|-|.....+.|+ ...+...+.+. . ..+.+.+..
T Consensus 35 ~iL~~l~~~-----~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~ 109 (142)
T 3bdd_A 35 SILQTLLKD-----APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQA 109 (142)
T ss_dssp HHHHHHHHH-----CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHhC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHH
Confidence 356667664 57888888775 46788999999999988877665544 44555544322 2 345666666
Q ss_pred HhhhcccCCCChhhHH
Q psy14236 221 LWRSISVDGMDNDKIK 236 (290)
Q Consensus 221 lW~~v~VP~~de~di~ 236 (290)
++..+ +...++++++
T Consensus 110 ~~~~~-~~~l~~~e~~ 124 (142)
T 3bdd_A 110 IKTSM-NQILTVEESE 124 (142)
T ss_dssp HHHHH-HTSSCHHHHH
T ss_pred HHHHH-HhcCCHHHHH
Confidence 66554 2234444443
No 36
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=49.54 E-value=43 Score=25.47 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=38.3
Q ss_pred HHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
.+|.+|..+ +|+++.+|.+. -+.+-..|+.|++.|-|.....+.|+ ...|...+.
T Consensus 33 ~iL~~l~~~-----~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~ 92 (144)
T 1lj9_A 33 LYLVRVCEN-----PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEK 92 (144)
T ss_dssp HHHHHHHHS-----TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH
T ss_pred HHHHHHHHC-----cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChh
Confidence 456666663 57888888775 46788999999999998877666544 344444443
No 37
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=48.92 E-value=43 Score=26.06 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=31.9
Q ss_pred CccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 163 GGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 163 ~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|+++.+|.+. -+.+-..|+.|++.|-|.....+.|+ ...|+..+.
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~ 107 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEK 107 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHH
Confidence 46777777764 46788999999999988877666444 344444443
No 38
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=48.88 E-value=20 Score=27.90 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=48.3
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCC-CceEEEecCCCCCCCCCHHHHHHhh
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPAD-KRKVMFYNDKSAQLDLDEDFQKLWR 223 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~-~~rivf~ND~~~~~~VD~EFk~lW~ 223 (290)
.+|.+|..+ +|+++.||.+.+ +.+-..|+.|++.|-|...+.+.| ....|+.-+.+.. +=+++...|.
T Consensus 45 ~iL~~l~~~-----~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~--~~~~~~~~~~ 117 (149)
T 4hbl_A 45 LVMLTLWEE-----NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQ--QQEAVFEAIS 117 (149)
T ss_dssp HHHHHHHHS-----SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHH--HHHHHHHHHH
Confidence 456666653 688888888754 668899999999998876655543 3455555555432 2345555565
Q ss_pred hcccCCCChhhHHH
Q psy14236 224 SISVDGMDNDKIKE 237 (290)
Q Consensus 224 ~v~VP~~de~di~~ 237 (290)
..-+.+.++++++.
T Consensus 118 ~~~~~~l~~~e~~~ 131 (149)
T 4hbl_A 118 SCLPQEFDTTEYDE 131 (149)
T ss_dssp TTSCTTCCHHHHHH
T ss_pred HHHHhhCCHHHHHH
Confidence 55555566655544
No 39
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=48.45 E-value=35 Score=26.27 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+ ...|+..+.
T Consensus 44 ~iL~~l~~~-----~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~ 103 (152)
T 3bj6_A 44 AILEGLSLT-----PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPR 103 (152)
T ss_dssp HHHHHHHHS-----TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHH
T ss_pred HHHHHHHhC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChh
Confidence 456666663 578888888765 6788999999999988876555443 444554443
No 40
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=47.71 E-value=44 Score=26.10 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=34.7
Q ss_pred HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+ ...|...+.
T Consensus 57 iL~~l~~~-----~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~ 115 (162)
T 3cjn_A 57 ALAILSAK-----DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPA 115 (162)
T ss_dssp HHHHHHHS-----CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHH
T ss_pred HHHHHHHC-----CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHH
Confidence 45555543 467777777654 5788999999999999877665443 344444443
No 41
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=47.31 E-value=39 Score=26.03 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYND 207 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND 207 (290)
+|.+|..+ +|+++.+|.+. -+.+-..|+.|++.|-|.....+.|+ ...|+..+
T Consensus 42 iL~~l~~~-----~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 99 (155)
T 1s3j_A 42 VLASLKKH-----GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTD 99 (155)
T ss_dssp HHHHHHHH-----SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred HHHHHHHc-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECH
Confidence 56666653 57888888774 56788999999999988876665444 34444443
No 42
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=46.88 E-value=22 Score=27.60 Aligned_cols=105 Identities=9% Similarity=0.153 Sum_probs=63.5
Q ss_pred HHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEee--CCeEEeccCCCCCCHHHHHHHHHh
Q psy14236 79 IVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIE--GNKYIFKPVFKIKDRKGLLKLLKQ 156 (290)
Q Consensus 79 iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p--~~~f~yKP~y~Ik~k~~LL~lL~~ 156 (290)
|-.||... ...+..++|...+++ +...- ...| +.|....+|.... ++.|.+-+.+--.=.+.|+..|..
T Consensus 7 l~~~L~~~-----~~~~~~~~l~~~~~l-~~~~l-~~~l--~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~ 77 (135)
T 2v9v_A 7 LAQIIQEH-----REGLDWQEAATRASL-SLEET-RKLL--QSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEE 77 (135)
T ss_dssp HHHHHHHC-----SSCEEHHHHHHHHTC-CHHHH-HHHH--HHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-----CcCCCHHHHHHHhCC-CHHHH-HHHH--HHHHhCCcEEEEecCCCeEEecHHHHHHHHHHHHHHHHH
Confidence 44556554 344555999988876 31111 1234 5666777766553 234323344433445567777765
Q ss_pred cc--cCCCCccchhhhHhhhhh------HHHHHHHhhhCCcEEE
Q psy14236 157 HD--LKGIGGILLDDVRESLPH------CEKALKHLSLQNEIIY 192 (290)
Q Consensus 157 ~~--q~~~~GI~v~dLkD~~p~------~~~~I~~Le~e~~Ilv 192 (290)
++ .+...||.-++|+-.+.. +...|+.|.++|.|..
T Consensus 78 yH~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~ 121 (135)
T 2v9v_A 78 FHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQL 121 (135)
T ss_dssp HHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEe
Confidence 32 135589999999988732 4677899999888774
No 43
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=46.21 E-value=26 Score=31.18 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEecc
Q psy14236 73 FGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKP 140 (290)
Q Consensus 73 ~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP 140 (290)
......|+++|-.. ..|+|+.||...+++ ..+.-+ .+| ..|...-=|..+++|+|.-=|
T Consensus 29 l~Ral~IL~~l~~~-----~~~ltl~eia~~lgl-~ksTv~-RlL--~tL~~~G~v~~~~~~~Y~LG~ 87 (275)
T 3mq0_A 29 LRRAVRILDLVAGS-----PRDLTAAELTRFLDL-PKSSAH-GLL--AVMTELDLLARSADGTLRIGP 87 (275)
T ss_dssp HHHHHHHHHHHHHC-----SSCEEHHHHHHHHTC-C--CHH-HHH--HHHHHTTSEEECTTSEEEECT
T ss_pred HHHHHHHHHHHhhC-----CCCCCHHHHHHHHCc-CHHHHH-HHH--HHHHHCCCEEECCCCcEEehH
Confidence 44556677777765 468999999999997 666665 566 589999999998777665533
No 44
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=45.75 E-value=48 Score=25.90 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=35.6
Q ss_pred HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|.+|..+ +|+++.||.+.+ +.+-..|+.|++.|-|.....+.|+ ...|+.-+.
T Consensus 55 vL~~l~~~-----~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 113 (159)
T 3s2w_A 55 FLMRLYRE-----DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEK 113 (159)
T ss_dssp HHHHHHHS-----CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHH
T ss_pred HHHHHHHC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHH
Confidence 45555553 578888877755 5688999999999998877666544 444554443
No 45
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=45.40 E-value=46 Score=26.58 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=31.8
Q ss_pred CccchhhhHhhhhh-----HHHHHHHhhhCCcEEEEecCCCCceEEEe
Q psy14236 163 GGILLDDVRESLPH-----CEKALKHLSLQNEIIYVTRPADKRKVMFY 205 (290)
Q Consensus 163 ~GI~v~dLkD~~p~-----~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ 205 (290)
|++...||.+..|+ .-..|++|++.|-|--...+.+.+++.|.
T Consensus 38 g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~ 85 (131)
T 4a5n_A 38 GKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYS 85 (131)
T ss_dssp SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred CCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEE
Confidence 78999999999977 55789999999977655444454555444
No 46
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=45.12 E-value=53 Score=24.91 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=33.0
Q ss_pred CccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 163 GGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 163 ~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|+++.+|.+. -+.+-..|+.|++.|-|...+.+.|+ ...++..+.
T Consensus 49 ~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~ 99 (146)
T 2gxg_A 49 GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEK 99 (146)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH
T ss_pred CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHH
Confidence 67888888775 46788999999999988877666544 444555443
No 47
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=44.80 E-value=48 Score=26.34 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=35.8
Q ss_pred HHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|.....+.|+ ...|..-+.
T Consensus 50 iL~~L~~~-----~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~ 108 (168)
T 2nyx_A 50 TLVILSNH-----GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKR 108 (168)
T ss_dssp HHHHHHHH-----CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHH
T ss_pred HHHHHHHc-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHH
Confidence 45555553 57888887774 45688899999999988876665544 334444443
No 48
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=44.28 E-value=63 Score=24.25 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=37.2
Q ss_pred HHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|.+|..+ +|+++.+|.+. -+.+-..|+.|++.|-|.....+.|+ ...|...+.
T Consensus 39 iL~~l~~~-----~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~ 97 (138)
T 1jgs_A 39 VLCSIRCA-----ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTG 97 (138)
T ss_dssp HHHHHHHH-----SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHH
T ss_pred HHHHHHhc-----CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChh
Confidence 55666553 57888888775 45788999999999988877666544 344444443
No 49
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=44.13 E-value=20 Score=29.75 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=65.2
Q ss_pred HHhHHhhhcCCceEEeeCCeEEeccCCCC-CCHHHHHHHHHhcccCCCCcc-chhhhHhhhhhHHHHHHHhhhCCcEEEE
Q psy14236 116 WLSTEALQNNPKIEVIEGNKYIFKPVFKI-KDRKGLLKLLKQHDLKGIGGI-LLDDVRESLPHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 116 ~L~~e~L~~npKI~~~p~~~f~yKP~y~I-k~k~~LL~lL~~~~q~~~~GI-~v~dLkD~~p~~~~~I~~Le~e~~Ilvv 193 (290)
+++ ..+...|.|-+. +|.+...-.-.. =+.++|+..||.+ || .++|++-+. ||..|.|-|+
T Consensus 7 ~~~-~~i~G~P~iLI~-~G~i~~~~l~k~rit~~dL~~~LR~~------gi~~l~dV~~Ai---------LE~nG~iSVi 69 (153)
T 3c6f_A 7 SSR-KFLEGEPNIVIR-KGELQYKVMKKNKIDINQLQSMLRQA------GSFSIQEVEYAI---------METNGMVSVL 69 (153)
T ss_dssp ----------CEEEEE-TTEECHHHHHHTTCCHHHHHHHHHHT------TCCSGGGEEEEE---------ECTTSCEEEE
T ss_pred HHH-HHhCCCcEEEEE-CCEEcHHHHhHcCCCHHHHHHHHHHc------CCCCHHHhcEEE---------EeCCCCEEEE
Confidence 444 567788888888 899988766322 2789999999994 55 577777664 7888999999
Q ss_pred ecCCCC---------------ceEEEecCCCCCCCCCHHHHHHhhhcccCCCChhhHHHHHHHcCCCCcc
Q psy14236 194 TRPADK---------------RKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPIQ 248 (290)
Q Consensus 194 ~~~~~~---------------~rivf~ND~~~~~~VD~EFk~lW~~v~VP~~de~di~~~L~~~Glkp~~ 248 (290)
...... ..+....|+. |.++--+.. +.|++=|.++|+++|+....
T Consensus 70 ~k~~~~~~t~~dl~~~~~~~~~~~~lI~DG~----I~~~~L~~~------~~de~WL~~eLk~~g~~~~~ 129 (153)
T 3c6f_A 70 PKSDFDKPTNKDMQIPSKSVSLPITLIIDGE----IVRDNLKEA------GVDEQWLKQEMKKKNIDKTE 129 (153)
T ss_dssp ECGGGSCCCTTTTTCCCCCCCCCEEEEETTE----ECHHHHHHH------SCCHHHHHHHHHHTTCCSGG
T ss_pred EcCcCCCCCHHHcCccccccCCCeeEEECCE----ecHHHHhhc------CCCHHHHHHHHHHcCCCCHH
Confidence 755321 2222333332 333332222 35778899999999998654
No 50
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=43.53 E-value=23 Score=26.57 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc
Q psy14236 74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ 106 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~ 106 (290)
..+..|++||..+. ..++++++|.+.+++
T Consensus 7 ~~i~~~~~~i~~~~----~~~~~~~~lA~~~~~ 35 (113)
T 3oio_A 7 PKLTEAVSLMEANI----EEPLSTDDIAYYVGV 35 (113)
T ss_dssp HHHHHHHHHHHTCS----SSCCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhh----cCCCCHHHHHHHHCc
Confidence 56889999999874 578999999999876
No 51
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.48 E-value=38 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=32.6
Q ss_pred HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPAD 198 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~ 198 (290)
+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|
T Consensus 41 iL~~l~~~-----~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d 88 (142)
T 2fbi_A 41 VIRILRQQ-----GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKD 88 (142)
T ss_dssp HHHHHHHH-----CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHc-----CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCC
Confidence 55666553 578888887765 578899999999998887666544
No 52
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=43.15 E-value=69 Score=22.75 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=36.6
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCCceEEEecC
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADKRKVMFYND 207 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND 207 (290)
-.+|.+|... +++++.||.+.. +.+-..|+.|++.|-|...+ .+....+..++
T Consensus 27 ~~il~~l~~~-----~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~--~~r~~~y~l~~ 83 (99)
T 3cuo_A 27 LLILCMLSGS-----PGTSAGELTRITGLSASATSQHLARMRDEGLIDSQR--DAQRILYSIKN 83 (99)
T ss_dssp HHHHHHHTTC-----CSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE--CSSCEEEEECC
T ss_pred HHHHHHHHhC-----CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--cCCEEEEEECh
Confidence 4577777552 589999988854 66889999999988887554 23334444444
No 53
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=43.03 E-value=36 Score=24.86 Aligned_cols=55 Identities=22% Similarity=0.437 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeC
Q psy14236 75 VLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEG 133 (290)
Q Consensus 75 ~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~ 133 (290)
....|++||++.-.+..+.|.|+.||.+.+++ . ......-| .+|...-.|.-+++
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S-~~TVrr~L--~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGL-S-IYQVRLYL--EQLHDVGVLEKVNA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-C-HHHHHHHH--HHHHHTTSEEEESC
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-C-HHHHHHHH--HHHHHCCcEEecCC
Confidence 45678888887511100369999999999987 3 22233445 58988888988864
No 54
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=42.36 E-value=44 Score=25.09 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=37.2
Q ss_pred HHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
.+|.+|..+ +|+++.+|.+. -+.+-..|+.|++.|-|.....+.|+ ...++..+.
T Consensus 42 ~iL~~l~~~-----~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~ 101 (140)
T 2nnn_A 42 AALVRLGET-----GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPA 101 (140)
T ss_dssp HHHHHHHHH-----SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHH
T ss_pred HHHHHHHHc-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHh
Confidence 466677664 57888888775 46788999999999988766555433 333444333
No 55
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=42.30 E-value=40 Score=25.74 Aligned_cols=83 Identities=12% Similarity=0.215 Sum_probs=48.5
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCCCC--CCCCHHHHHH
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKSAQ--LDLDEDFQKL 221 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~~~--~~VD~EFk~l 221 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+ ...|..-+.+.. -.+.+.+...
T Consensus 41 ~iL~~l~~~-----~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~ 115 (143)
T 3oop_A 41 SVLEGIEAN-----EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDIVEAS 115 (143)
T ss_dssp HHHHHHHHH-----SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHHHHHHH
Confidence 366777664 689999988765 5688999999999988766555443 455555544332 2233444444
Q ss_pred hhhcccCCCChhhHHH
Q psy14236 222 WRSISVDGMDNDKIKE 237 (290)
Q Consensus 222 W~~v~VP~~de~di~~ 237 (290)
+..+ +...++++++.
T Consensus 116 ~~~~-~~~l~~~e~~~ 130 (143)
T 3oop_A 116 CEKM-FAGVTRTDLEQ 130 (143)
T ss_dssp HHHH-TTTCCHHHHHH
T ss_pred HHHH-HcCCCHHHHHH
Confidence 4443 23344555443
No 56
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=42.12 E-value=47 Score=26.16 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=30.2
Q ss_pred CccchhhhHhhhh-----hHHHHHHHhhhCCcEEEEecCCCCceEEE
Q psy14236 163 GGILLDDVRESLP-----HCEKALKHLSLQNEIIYVTRPADKRKVMF 204 (290)
Q Consensus 163 ~GI~v~dLkD~~p-----~~~~~I~~Le~e~~Ilvv~~~~~~~rivf 204 (290)
+++.+.||.+..+ .+-..|+.|++.|-|--...+.+..++.|
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y 93 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEY 93 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEE
Confidence 6899999998875 46788999999898875544434444433
No 57
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=41.84 E-value=60 Score=22.94 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHhcccCCCCccc-hhhhHhhh----hhHHHHHHHhhhCCcEEE
Q psy14236 142 FKIKDRKGLLKLLKQHDLKGIGGIL-LDDVRESL----PHCEKALKHLSLQNEIIY 192 (290)
Q Consensus 142 y~Ik~k~~LL~lL~~~~q~~~~GI~-v~dLkD~~----p~~~~~I~~Le~e~~Ilv 192 (290)
|..-+.++||+++++. |||. |++...-| -.|...++.|+++|-|-+
T Consensus 7 ~~~~~e~~lL~yIr~s-----GGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 7 HHMITERELLDYIVNN-----GGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp SCCCCHHHHHHHHHHT-----TSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred hhhccHHHHHHHHHHc-----CCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 4566789999999995 6654 45555444 347788999999988753
No 58
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=41.83 E-value=44 Score=25.33 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK 199 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~ 199 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+
T Consensus 37 ~iL~~l~~~-----~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 37 DILQKIYFE-----GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp HHHHHHHHH-----CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred HHHHHHHHc-----CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCC
Confidence 355666553 578888877754 6788999999999988876655443
No 59
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=41.45 E-value=24 Score=26.40 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEE
Q psy14236 146 DRKGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 146 ~k~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv 193 (290)
.+.++|.+|++ .|+++.+|... -..|-..|..|+++|-|...
T Consensus 18 ~~~~IL~lL~~------~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 18 IVCEAIKTIGI------EGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHHHSS------STEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHHH------cCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 36789999996 35999998874 46788999999999988754
No 60
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=41.40 E-value=24 Score=26.24 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc
Q psy14236 75 VLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ 106 (290)
Q Consensus 75 ~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~ 106 (290)
.+..|++||..+. ..+++++||...+++
T Consensus 3 ~i~~~~~~i~~~~----~~~~~~~~lA~~~~~ 30 (108)
T 3mn2_A 3 AVRQVEEYIEANW----MRPITIEKLTALTGI 30 (108)
T ss_dssp HHHHHHHHHHHHT----TSCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHcc----cCCCCHHHHHHHHCC
Confidence 5788999999885 578999999999876
No 61
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=41.22 E-value=44 Score=25.36 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=36.3
Q ss_pred CCCCCH-HHHHHHHHhcccCCCCccchhhhHhhh--------hhHHHHHHHhhhCCcEEEE
Q psy14236 142 FKIKDR-KGLLKLLKQHDLKGIGGILLDDVRESL--------PHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 142 y~Ik~k-~~LL~lL~~~~q~~~~GI~v~dLkD~~--------p~~~~~I~~Le~e~~Ilvv 193 (290)
+++... ..+|.+|-.. +|+++.||.+.. +.+-..|+.|++.|-|-..
T Consensus 31 ~~LT~~e~~VL~~L~~~-----~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWSL-----GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CCCCCSCSHHHHHHHHH-----SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCCHHHHHHHHHHHhC-----CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 344443 3788888874 689999999875 5688999999999977654
No 62
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=40.89 E-value=78 Score=23.74 Aligned_cols=84 Identities=10% Similarity=0.197 Sum_probs=49.7
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCCCC--CCCCHHHHHH
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKSAQ--LDLDEDFQKL 221 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~~~--~~VD~EFk~l 221 (290)
.+|.+|..+ +.+|+++.+|.+.+ +.+-..|+.|++.|-|.....+.|+ ...|...+.+.. -.+.+.+..+
T Consensus 38 ~iL~~l~~~---~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~~~~~~~ 114 (141)
T 3bro_A 38 TIIDYLSRN---KNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMDSD 114 (141)
T ss_dssp HHHHHHHHT---TTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHC---CCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHHHHHHHH
Confidence 456677664 12378888888764 5688999999999988877666544 445555544332 1233334444
Q ss_pred hhhcccCCCChhhHH
Q psy14236 222 WRSISVDGMDNDKIK 236 (290)
Q Consensus 222 W~~v~VP~~de~di~ 236 (290)
+..+ +...++++++
T Consensus 115 ~~~~-~~~l~~~e~~ 128 (141)
T 3bro_A 115 QSQM-TSGLNKEEVV 128 (141)
T ss_dssp HHHH-TTTCCHHHHH
T ss_pred HHHH-HhcCCHHHHH
Confidence 4443 2334444443
No 63
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=40.69 E-value=41 Score=26.02 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPAD 198 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~ 198 (290)
+|.+|..+ +|+++.+|.+. .+.+-..|+.|++.|-|.....+.|
T Consensus 52 iL~~l~~~-----~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d 99 (153)
T 2pex_A 52 VMLVLWET-----DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASD 99 (153)
T ss_dssp HHHHHHHS-----CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----
T ss_pred HHHHHHhC-----CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCccc
Confidence 45555553 56777777764 4678899999999998876654433
No 64
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.57 E-value=60 Score=23.13 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecC
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRP 196 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~ 196 (290)
-.+|.+|..+ +++++.+|.+. -+.+-..|+.|++.|-|.....+
T Consensus 23 ~~il~~l~~~-----~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 23 VRIYSLLLER-----GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HHHHHHHHHH-----CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHc-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 3567777664 57888888774 45788999999999988876555
No 65
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=40.03 E-value=79 Score=23.79 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=38.4
Q ss_pred HHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
.+|.+|..+ +.+|+++.||.+. -+.+-..|+.|++.|-|.....+.|+ ...|..-+.
T Consensus 35 ~vL~~l~~~---~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~ 96 (139)
T 3eco_A 35 HTLGYLYAH---QQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTS 96 (139)
T ss_dssp HHHHHHHHS---TTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHH
T ss_pred HHHHHHHhc---CCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHH
Confidence 456666664 2358888888774 46788999999999999877766544 444544443
No 66
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=39.33 E-value=27 Score=26.00 Aligned_cols=29 Identities=0% Similarity=0.228 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc
Q psy14236 74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ 106 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~ 106 (290)
..+..|++||..+. ..++++++|...+++
T Consensus 5 ~~i~~~~~~i~~~~----~~~~~~~~lA~~~~~ 33 (108)
T 3oou_A 5 PIIQNVLSYITEHF----SEGMSLKTLGNDFHI 33 (108)
T ss_dssp CHHHHHHHHHHHHT----TSCCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh----cCCCCHHHHHHHHCc
Confidence 35788999999985 568999999999876
No 67
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=39.17 E-value=34 Score=24.63 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=27.6
Q ss_pred CccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCC
Q psy14236 163 GGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPA 197 (290)
Q Consensus 163 ~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~ 197 (290)
+|+++.||.+. -+.+-..|+.|++.|-|.......
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~ 73 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEG 73 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecccc
Confidence 68999999885 466889999999999888765543
No 68
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=39.08 E-value=25 Score=25.73 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhH-HHHhHHhhhcCCceEEe
Q psy14236 76 LAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVK-IWLSTEALQNNPKIEVI 131 (290)
Q Consensus 76 l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~-~~L~~e~L~~npKI~~~ 131 (290)
|..|+++|+++ ..+++.||..++++ +.... .-| +.|...-.|.-.
T Consensus 4 L~~Il~~L~~~------g~vsv~eLa~~l~V---S~~TIRrdL--~~Le~~G~l~R~ 49 (78)
T 1xn7_A 4 LIQVRDLLALR------GRMEAAQISQTLNT---PQPMINAML--QQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHS------CSBCHHHHHHHTTC---CHHHHHHHH--HHHHHHTSEEEE
T ss_pred HHHHHHHHHHc------CCCcHHHHHHHHCc---CHHHHHHHH--HHHHHCCCEEEe
Confidence 77899999985 68999999998865 43332 223 345554455433
No 69
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.85 E-value=49 Score=25.19 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCC-CceEEEecCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPAD-KRKVMFYNDK 208 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~-~~rivf~ND~ 208 (290)
.+|.+|..+ .+|+++.+|.+.+ +.+-..|+.|++.|-|.....+.| ....|+..+.
T Consensus 39 ~iL~~l~~~----~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~ 99 (147)
T 2hr3_A 39 VVLGAIDRL----GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSE 99 (147)
T ss_dssp HHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHH
T ss_pred HHHHHHHHc----CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHH
Confidence 456666662 1688999988854 668899999999998876655543 3444554443
No 70
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=38.67 E-value=26 Score=29.20 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhH-HHHhHHhhhcCCc-eEEeeCCeEEeccCC
Q psy14236 71 YKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVK-IWLSTEALQNNPK-IEVIEGNKYIFKPVF 142 (290)
Q Consensus 71 ~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~-~~L~~e~L~~npK-I~~~p~~~f~yKP~y 142 (290)
........|+++|++. ..++|..||.+.+++ +.... .-+ ..|...-- |... .+-|.+.+.+
T Consensus 18 ~~~~R~~~Il~~L~~~-----~~~~s~~eLa~~l~v---S~~Ti~rdi--~~L~~~G~~I~~~-~~Gy~l~~~~ 80 (187)
T 1j5y_A 18 VRQERLKSIVRILERS-----KEPVSGAQLAEELSV---SRQVIVQDI--AYLRSLGYNIVAT-PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHHHHC-----SSCBCHHHHHHHHTS---CHHHHHHHH--HHHHHHTCCCEEE-TTEEECCTTT
T ss_pred hHHHHHHHHHHHHHHc-----CCCcCHHHHHHHHCc---CHHHHHHHH--HHHHHCCCeEEEE-CCEEEECCcc
Confidence 3456678899999874 468999999999876 33222 223 34554333 6555 4567766554
No 71
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=38.25 E-value=35 Score=26.84 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=35.0
Q ss_pred HHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKS 209 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~ 209 (290)
+|.+|..+ +|+++.||.+. -+.+-..|+.|++.|-|...+.+.|+ ...|+.-+.+
T Consensus 58 vL~~l~~~-----~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G 117 (161)
T 3e6m_A 58 LLSSLSAY-----GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKG 117 (161)
T ss_dssp HHHHHHHH-----SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHH
T ss_pred HHHHHHhC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHH
Confidence 45555553 57888888774 45688999999999988765554443 4555555443
No 72
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=38.16 E-value=31 Score=25.58 Aligned_cols=29 Identities=3% Similarity=0.069 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhcCCCCC-CCcCHHHHHHhhcc
Q psy14236 74 GVLAKIVKHMKQRHQDGDD-HPLTIDEILDETNQ 106 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~-~pltl~eIl~~l~~ 106 (290)
..+..|++||..+. . .++++++|.+.+++
T Consensus 3 ~~i~~~~~~i~~~~----~~~~~~~~~lA~~~~~ 32 (107)
T 2k9s_A 3 NRVREACQYISDHL----ADSNFDIASVAQHVCL 32 (107)
T ss_dssp HHHHHHHHHHHHTS----SCSSCCHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHh----ccCCCCHHHHHHHHCC
Confidence 35788999999874 3 68999999999876
No 73
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=38.06 E-value=18 Score=26.75 Aligned_cols=53 Identities=6% Similarity=-0.018 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCC
Q psy14236 73 FGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGN 134 (290)
Q Consensus 73 ~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~ 134 (290)
...-.+|+.||+.+ .|+|..||..++++. ......+-| ..|.+---|...+.|
T Consensus 10 ~~~~~~IL~~Lk~~------g~~ta~eiA~~Lgit-~~~aVr~hL--~~Le~eGlV~~~~~g 62 (79)
T 1xmk_A 10 AEIKEKICDYLFNV------SDSSALNLAKNIGLT-KARDINAVL--IDMERQGDVYRQGTT 62 (79)
T ss_dssp HHHHHHHHHHHHHT------CCEEHHHHHHHHCGG-GHHHHHHHH--HHHHHTTSEEEECSS
T ss_pred hhHHHHHHHHHHHc------CCcCHHHHHHHcCCC-cHHHHHHHH--HHHHHCCCEEecCCC
Confidence 45678899999996 699999999999873 221222345 367777777755434
No 74
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=37.91 E-value=75 Score=23.76 Aligned_cols=48 Identities=6% Similarity=0.079 Sum_probs=37.1
Q ss_pred CCCCCHH-HHHHHHHhcccCCCCccchhhhHhh--------hhhHHHHHHHhhhCCcEEEEe
Q psy14236 142 FKIKDRK-GLLKLLKQHDLKGIGGILLDDVRES--------LPHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 142 y~Ik~k~-~LL~lL~~~~q~~~~GI~v~dLkD~--------~p~~~~~I~~Le~e~~Ilvv~ 194 (290)
|++...+ .+|.+|-.+ +|+++.||.+. .+.+-..|+.|++.|-|...+
T Consensus 6 ~~Lt~~q~~vL~~L~~~-----~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWDK-----KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp CCCCHHHHHHHHHHHHS-----SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHHHHhc-----CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 5555444 578888874 68999999886 457899999999999887554
No 75
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=37.22 E-value=52 Score=25.37 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=35.7
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEE--EecCCCC-ceEEEecCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIY--VTRPADK-RKVMFYNDK 208 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilv--v~~~~~~-~rivf~ND~ 208 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.. ...+.|+ ...|+..+.
T Consensus 45 ~iL~~l~~~-----~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~ 106 (154)
T 2qww_A 45 AMINVIYST-----PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKK 106 (154)
T ss_dssp HHHHHHHHS-----TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHH
T ss_pred HHHHHHHHC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHH
Confidence 356666664 578888887754 568889999999998875 5444443 344544443
No 76
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=36.10 E-value=56 Score=25.79 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=37.8
Q ss_pred HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|.+|..+ +.+|+++.+|.+.+ +.+-..|+.|++.|-|...+.+.|+ ...|+.-+.
T Consensus 51 vL~~l~~~---~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 111 (168)
T 3u2r_A 51 TLRLLRSV---HPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDA 111 (168)
T ss_dssp HHHHHHHH---TTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred HHHHHHhc---CCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHH
Confidence 45555553 12588888888854 6788999999999988877666544 334444443
No 77
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=35.96 E-value=1.1e+02 Score=26.87 Aligned_cols=158 Identities=12% Similarity=0.126 Sum_probs=93.6
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCC-CCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEeccCCCCCCH
Q psy14236 69 SQYKFGVLAKIVKHMKQRHQDGDD-HPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDR 147 (290)
Q Consensus 69 ~~~~~t~l~~iV~~LK~r~~~g~~-~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP~y~Ik~k 147 (290)
..+.......|++.|..-|..--. .-++.++|...+.- .++...-..|. +.|.....|..+ |-|-..|-|.+.-.
T Consensus 61 ~~~~~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~~-~~~~~l~~~ll-~~l~~~g~l~~~--~~~v~l~~h~~~~~ 136 (258)
T 1lva_A 61 TERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFS-RLPARVYQALL-EEWSREGRLQLA--ANTVALAGFTPSFS 136 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCT-TSCHHHHHHHH-HHHHHTTSEEEE--TTEEEETTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHhccc-cCCHHHHHHHH-HHHHHCCCEEec--CCEEeCCCCccCCC
Confidence 334455556677777765532222 23888999888752 34444333343 566677888888 44555688866422
Q ss_pred -------HHHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCCceEEEecCC--------
Q psy14236 148 -------KGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDK-------- 208 (290)
Q Consensus 148 -------~~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~-------- 208 (290)
+.|+..+++ .++.--.+.||.+.. ..+.+.+..|.++|.|+-|. ..++|..+.
T Consensus 137 ~~~~~~~~~i~~~~~~---~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~-----~~~~~~~~~~~~~~~~l 208 (258)
T 1lva_A 137 ETQKKLLKDLEDKYRV---SRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIN-----DEFYWHRQALGEAREVI 208 (258)
T ss_dssp HHHHHHHHHHHHHHHH---HTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESS-----SSBEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---CCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEec-----CCeEEcHHHHHHHHHHH
Confidence 224444443 223334678887743 34567888999999998763 223333211
Q ss_pred -----CCCCCCCHHHHHHh---hhcccCCCChhhHHHHHHHcCCC
Q psy14236 209 -----SAQLDLDEDFQKLW---RSISVDGMDNDKIKEYLEKQGIR 245 (290)
Q Consensus 209 -----~~~~~VD~EFk~lW---~~v~VP~~de~di~~~L~~~Glk 245 (290)
.-.+.| .+|++++ |...|| |-+||-+.|++
T Consensus 209 ~~~~~~~~it~-a~~Rd~lg~SRK~aIp------lLE~~Dr~g~T 246 (258)
T 1lva_A 209 KNLASTGPFGL-AEARDALGSSRKYVLP------LLEYLDQVKFT 246 (258)
T ss_dssp HHHHTTSCBCH-HHHHHHHTCCHHHHHH------HHHHHHHTTSE
T ss_pred HHHHhcCCcCH-HHHHHHhCCcHHHHHH------HHHHHhhcCce
Confidence 111222 5678777 446777 88888888876
No 78
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=35.32 E-value=23 Score=27.03 Aligned_cols=84 Identities=17% Similarity=0.303 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCCceEEEecCCCCC--CCCCHHHHH
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQ--LDLDEDFQK 220 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~~~~--~~VD~EFk~ 220 (290)
.-.+|.+|.. +++++.||.+. -+.+-..|+.|++.|-|...+. +...++..++.... ..+-.++..
T Consensus 20 R~~Il~~L~~------~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~--gr~~~y~l~~~~~~~l~~~~~~~~~ 91 (118)
T 3f6o_A 20 RRAVLGRLSR------GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ--GRVRTCAIEKEPFTAVEAWLAEQQE 91 (118)
T ss_dssp HHHHHHHHHT------CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEECSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec--CCEEEEEECHHHHHHHHHHHHHHHH
Confidence 3467777864 67889998775 4678899999999887765432 34444444554332 223355666
Q ss_pred HhhhcccCCCChhhHHHHHHHcCC
Q psy14236 221 LWRSISVDGMDNDKIKEYLEKQGI 244 (290)
Q Consensus 221 lW~~v~VP~~de~di~~~L~~~Gl 244 (290)
+|... ++ .+.+.|...|-
T Consensus 92 ~~~~~-l~-----~l~~~l~~~~~ 109 (118)
T 3f6o_A 92 LWESR-TD-----RLEQFVTEHTV 109 (118)
T ss_dssp HHHTC-C-----------------
T ss_pred HHHHH-HH-----HHHHHHhccCC
Confidence 78765 44 26666666553
No 79
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=34.62 E-value=42 Score=25.66 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
+|.+|..+ +|+++.+|.+.+ +.+-..|+.|++.|-|.....+.|+ ...|..-+.
T Consensus 36 iL~~l~~~-----~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~ 94 (145)
T 3g3z_A 36 VLYTLATE-----GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTET 94 (145)
T ss_dssp HHHHHHHH-----CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHH
T ss_pred HHHHHHHC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChh
Confidence 56666664 578888887754 5688999999999988755444343 344444443
No 80
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=34.02 E-value=96 Score=25.23 Aligned_cols=85 Identities=8% Similarity=0.120 Sum_probs=52.0
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCCCC--CCCCHHHHHH
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKSAQ--LDLDEDFQKL 221 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~~~--~~VD~EFk~l 221 (290)
.+|.+|..++ .+|+++.+|.+.+ +.+-..|+.|++.|-|...+.+.|+ ...|+.-+.+.. -.+.+.+..+
T Consensus 45 ~vL~~L~~~~---~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~ 121 (189)
T 3nqo_A 45 MTILSILHLP---EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINF 121 (189)
T ss_dssp HHHHHHHHSC---GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHHHHH
Confidence 4566776642 3789999998865 5688999999999999877766544 455555544332 1233334444
Q ss_pred hhhcccCCCChhhHHH
Q psy14236 222 WRSISVDGMDNDKIKE 237 (290)
Q Consensus 222 W~~v~VP~~de~di~~ 237 (290)
+..+ +...+++++..
T Consensus 122 ~~~~-~~~l~~ee~~~ 136 (189)
T 3nqo_A 122 MADV-FHEFTKDELET 136 (189)
T ss_dssp HHHH-TTTCCHHHHHH
T ss_pred HHHH-HHhCCHHHHHH
Confidence 4443 33345555443
No 81
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=32.84 E-value=60 Score=28.03 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEecc
Q psy14236 73 FGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKP 140 (290)
Q Consensus 73 ~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP 140 (290)
......|+++|... ..++|+.||...+++ ..+.-. ..| ..|...-=|..+.++.|.--|
T Consensus 7 l~r~l~iL~~l~~~-----~~~~~~~ela~~~gl-~~stv~-r~l--~~L~~~G~v~~~~~~~Y~lg~ 65 (249)
T 1mkm_A 7 LKKAFEILDFIVKN-----PGDVSVSEIAEKFNM-SVSNAY-KYM--VVLEEKGFVLRKKDKRYVPGY 65 (249)
T ss_dssp HHHHHHHHHHHHHC-----SSCBCHHHHHHHTTC-CHHHHH-HHH--HHHHHTTSEEECTTSCEEECT
T ss_pred HHHHHHHHHHHHhC-----CCCCCHHHHHHHHCc-CHHHHH-HHH--HHHHHCCcEEECCCCcEEECH
Confidence 45667788888764 458999999999977 444333 455 478888888877456666544
No 82
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=32.49 E-value=39 Score=25.60 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc
Q psy14236 74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ 106 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~ 106 (290)
..+..|++||..+. ..++++++|...+++
T Consensus 7 ~~~~~~~~~i~~~~----~~~~~~~~lA~~~~~ 35 (120)
T 3mkl_A 7 NMRTRVCTVINNNI----AHEWTLARIASELLM 35 (120)
T ss_dssp CHHHHHHHHHHTST----TSCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc----cCCCCHHHHHHHHCc
Confidence 46889999999874 568999999988866
No 83
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=31.50 E-value=48 Score=25.81 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhhh------hhHHHHHHHhhhCCcEEEEecCCCCceEEEecCCCCCCCCCHHHHH
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRESL------PHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQK 220 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~------p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~~~~~~VD~EFk~ 220 (290)
...+|.+|+++ |.+++.+|.+.. +.|-+.|+.|++.|-|-.. +.+ ...+.++=..
T Consensus 15 d~~IL~~L~~~-----g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~----~rg----------~Y~LT~~G~~ 75 (111)
T 3b73_A 15 DDRILEIIHEE-----GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL----ANG----------VYVITEEGEA 75 (111)
T ss_dssp HHHHHHHHHHH-----SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC----STT----------CEEECHHHHH
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec----CCc----------eEEECchHHH
Confidence 36799999885 689999998776 4688999999998887642 111 2356666667
Q ss_pred Hhhhc
Q psy14236 221 LWRSI 225 (290)
Q Consensus 221 lW~~v 225 (290)
.|..-
T Consensus 76 ~l~~~ 80 (111)
T 3b73_A 76 YLNGE 80 (111)
T ss_dssp HHTTC
T ss_pred HHHHH
Confidence 77653
No 84
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=31.49 E-value=88 Score=23.25 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=33.6
Q ss_pred HHHHHHHhcccCCCCccchhhhHhh--------hhhHHHHHHHhhhCCcEEEEec
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRES--------LPHCEKALKHLSLQNEIIYVTR 195 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~--------~p~~~~~I~~Le~e~~Ilvv~~ 195 (290)
.+|.+|..+ +|+++.||.+. .+.+-..|+.|++.|-|.....
T Consensus 14 ~vL~~l~~~-----~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 14 EVMNIIWMK-----KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HHHHHHHHH-----SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHhC-----CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 577888764 68999999887 4568899999999998876543
No 85
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=31.36 E-value=43 Score=25.97 Aligned_cols=45 Identities=11% Similarity=0.224 Sum_probs=27.5
Q ss_pred CccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecC
Q psy14236 163 GGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYND 207 (290)
Q Consensus 163 ~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND 207 (290)
+|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+ ...|+.-+
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 105 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTD 105 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECH
Confidence 567777777654 5788999999999977654444333 33344433
No 86
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=30.82 E-value=48 Score=25.36 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=39.6
Q ss_pred CccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCCCC--CCCCHHHHHHhhhcccCCCChhhH
Q psy14236 163 GGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKSAQ--LDLDEDFQKLWRSISVDGMDNDKI 235 (290)
Q Consensus 163 ~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~~~--~~VD~EFk~lW~~v~VP~~de~di 235 (290)
+|+++.||.+. -+.+-..|+.|++.|-|...+.+.|+ ...|..-+.+.. -.+.+.+..+...+ +.+++++
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~---~l~~~e~ 125 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF---NISEREA 125 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHHHHHHHHHTS---CCCHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHHHHHHHHHHhc---CCCHHHH
Confidence 57777777764 46688999999999988866655443 445555444322 12333344444433 3445555
Q ss_pred HH
Q psy14236 236 KE 237 (290)
Q Consensus 236 ~~ 237 (290)
+.
T Consensus 126 ~~ 127 (140)
T 3hsr_A 126 SD 127 (140)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 87
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=30.46 E-value=31 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=31.0
Q ss_pred CCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeE
Q psy14236 92 DHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKY 136 (290)
Q Consensus 92 ~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f 136 (290)
++.+++.-|+.-=.+-.+..+. .++. +||+..+.+++++||+.
T Consensus 42 ~G~Vpl~~i~sF~r~k~lt~d~-~~i~-~al~~S~~lev~edg~~ 84 (92)
T 1s29_A 42 EGFVSLETLLTFKRVNSVTTDV-KEVV-EAIRPSEKLVLSEDGLM 84 (92)
T ss_dssp TCCEEHHHHTTSHHHHTTCSCH-HHHH-HHHTTCSSEEECTTSSE
T ss_pred CCCEEhHHHhCChhHHHHcCCH-HHHH-HHHhhCCeEEEeCCCCE
Confidence 5789999986544444555554 3444 89999999999988753
No 88
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=29.69 E-value=46 Score=27.67 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEee
Q psy14236 73 FGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIE 132 (290)
Q Consensus 73 ~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p 132 (290)
..+|.+|.+|+.++ +.|.|+.||...+++ .-+ .....| .+|...--|..++
T Consensus 8 ~~il~~I~~~~~~~-----g~~~s~~eia~~lgl-~~~-tv~~~l--~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 8 RKVLLFIEEFIEKN-----GYPPSVREIARRFRI-TPR-GALLHL--IALEKKGYIERKN 58 (196)
T ss_dssp HHHHHHHHHHHHHH-----SSCCCHHHHHHHHTS-CHH-HHHHHH--HHHHHTTSEECC-
T ss_pred HHHHHHHHHHHHHh-----CCCCCHHHHHHHcCC-CcH-HHHHHH--HHHHHCCCEEecC
Confidence 45677888888887 689999999999987 322 333556 5787777776664
No 89
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=29.68 E-value=46 Score=25.40 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=28.2
Q ss_pred HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPAD 198 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~ 198 (290)
+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|
T Consensus 42 vL~~l~~~-----~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D 89 (142)
T 3ech_A 42 VLKLIDEQ-----RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSD 89 (142)
T ss_dssp HHHHHHHT-----TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC------
T ss_pred HHHHHHhC-----CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCC
Confidence 45556553 477888877654 567899999999998875554433
No 90
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=29.43 E-value=73 Score=25.39 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=32.8
Q ss_pred HHHHHHHHhcccCCCCccchhhhHh----hhhhHHHHHHHhhhCCcEEE
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRE----SLPHCEKALKHLSLQNEIIY 192 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD----~~p~~~~~I~~Le~e~~Ilv 192 (290)
..+|.+|+.. +.+++.||.+ +-+.|...|+.|+++|-|.-
T Consensus 13 ~~il~~L~~~-----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 13 IKILQVLQEN-----GRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHC-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 4689999884 5789999988 45678899999999998863
No 91
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.29 E-value=53 Score=23.98 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhcCCCCCC-CcCHHHHHHhhcc
Q psy14236 75 VLAKIVKHMKQRHQDGDDH-PLTIDEILDETNQ 106 (290)
Q Consensus 75 ~l~~iV~~LK~r~~~g~~~-pltl~eIl~~l~~ 106 (290)
.+..|++||.++. .. +++++||.+.+++
T Consensus 3 ~~~~i~~~i~~~~----~~~~~~~~~lA~~~~~ 31 (103)
T 3lsg_A 3 AKELIQNIIEESY----TDSQFTLSVLSEKLDL 31 (103)
T ss_dssp HHHHHHHHHHHHT----TCTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc----cCCCCCHHHHHHHHCc
Confidence 5678899999875 33 7999999999876
No 92
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=29.28 E-value=1.2e+02 Score=23.94 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=33.8
Q ss_pred HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCCceEEE
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADKRKVMF 204 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf 204 (290)
+|..|.. |++++.||.+.. +.+-..|+.|++.|-|--...+.+. ++.|
T Consensus 29 IL~~L~~------g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 29 IVRDAFE------GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHHT------TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHHh------CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 5566642 678999998865 4577889999999988765555455 4444
No 93
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=29.22 E-value=1.4e+02 Score=21.81 Aligned_cols=53 Identities=11% Similarity=-0.053 Sum_probs=36.3
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCCceEEEecCC
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDK 208 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~ 208 (290)
-.+|.+| .+ +++++.||.+. -+.+-..|+.|++.|-|..... +....++.++.
T Consensus 24 ~~IL~~L-~~-----~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~--gr~~~y~l~~~ 80 (114)
T 2oqg_A 24 WEILTEL-GR-----ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV--GREIRYRALGA 80 (114)
T ss_dssp HHHHHHH-HH-----SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE--TTEEEEEECSH
T ss_pred HHHHHHH-Hc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec--CCEEEEEechH
Confidence 4678888 32 57899998885 4678899999999888865432 33333444443
No 94
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=28.79 E-value=18 Score=28.09 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=55.0
Q ss_pred CCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEeccCCCCCCHHHHHHHHHhcccCCCCccchhhhHh
Q psy14236 93 HPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRE 172 (290)
Q Consensus 93 ~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~yKP~y~Ik~k~~LL~lL~~~~q~~~~GI~v~dLkD 172 (290)
.|.++.||...+++ +-..- ..|| ..|...-.|.-.++|.|-....+ -.=.+.|.++++.+ +.|++.+++|
T Consensus 19 ~p~~~~~la~~~~~-~~~~~-~~~l--~~l~~~G~l~~i~~~~~~~~~~~-~~~~~~l~~~~~~~-----~~it~ae~Rd 88 (121)
T 2pjp_A 19 EPWWVRDLAKETGT-DEQAM-RLTL--RQAAQQGIITAIVKDRYYRNDRI-VEFANMIRDLDQEC-----GSTCAADFRD 88 (121)
T ss_dssp SCEEHHHHHHHTTC-CHHHH-HHHH--HHHHHTTSEEEEETTEEEEHHHH-HHHHHHHHHHHHHH-----SSEEHHHHHH
T ss_pred CCCCHHHHHHHhCC-CHHHH-HHHH--HHHHHCCCEEEecCCceECHHHH-HHHHHHHHHHHHHC-----CCccHHHHHH
Confidence 58899999999876 33222 2577 47778777777656655443333 22234455555664 7899999999
Q ss_pred hhhhHH----HHHHHhhhCC
Q psy14236 173 SLPHCE----KALKHLSLQN 188 (290)
Q Consensus 173 ~~p~~~----~~I~~Le~e~ 188 (290)
.+--.- ..++-|.+.|
T Consensus 89 ~lg~sRK~ai~lLE~~Dr~g 108 (121)
T 2pjp_A 89 RLGVGRKLAIQILEYFDRIG 108 (121)
T ss_dssp HHTSCHHHHHHHHHHHHHHT
T ss_pred HHCCcHHHHHHHHHHHhhcC
Confidence 995433 3555555444
No 95
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.22 E-value=54 Score=23.03 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhcCCCCC-CCcCHHHHHHhhcc--CCCCchhH-HHHhHHhhhcCCceEEee--CCeEEe
Q psy14236 74 GVLAKIVKHMKQRHQDGDD-HPLTIDEILDETNQ--LDVGNKVK-IWLSTEALQNNPKIEVIE--GNKYIF 138 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~-~pltl~eIl~~l~~--~di~~~~~-~~L~~e~L~~npKI~~~p--~~~f~y 138 (290)
.+-..|+++|... + .|+|++||...+.- .+++...- ..| +.|...--|.-.. +|...|
T Consensus 17 ~~r~~IL~~l~~~-----~~~~~s~~el~~~l~~~~~~is~~TVyR~L--~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 17 LPRLKILEVLQEP-----DNHHVSAEDLYKRLIDMGEEIGLATVYRVL--NQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHHHHTSG-----GGSSBCHHHHHHHHHHTTCCCCHHHHHHHH--HHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHhCCCCCHhhHHHHH--HHHHHCCCeEEEeeCCCceEe
Confidence 4557799999875 4 68999999999831 13333322 344 5777777776544 345555
No 96
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=28.19 E-value=93 Score=23.18 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.1
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEe
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~ 194 (290)
-.+|.+|.. +++++.||.+. -+.+-..|+.|++.|-|...+
T Consensus 28 ~~IL~~L~~------~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 28 LQILDLLAQ------GERAVEAIATATGMNLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHHHHHHTT------CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHc------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 467777753 67899998875 456888999999988877543
No 97
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=28.17 E-value=31 Score=25.98 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhH-HHHhHHhhhcCCceE
Q psy14236 76 LAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVK-IWLSTEALQNNPKIE 129 (290)
Q Consensus 76 l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~-~~L~~e~L~~npKI~ 129 (290)
|..|++||+++ ..+++.||...+++ +.... .-| +.|...-.|.
T Consensus 4 L~~Il~~L~~~------g~vsv~eLA~~l~V---S~~TIRrDL--~~Le~~G~l~ 47 (87)
T 2k02_A 4 LMEVRDMLALQ------GRMEAKQLSARLQT---PQPLIDAML--ERMEAMGKVV 47 (87)
T ss_dssp THHHHHHHHHS------CSEEHHHHHHHTTC---CHHHHHHHH--HHHHTTCCSE
T ss_pred HHHHHHHHHHc------CCCcHHHHHHHHCc---CHHHHHHHH--HHHHHCCCEE
Confidence 67899999985 68999999998865 43332 223 4555555544
No 98
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=27.97 E-value=90 Score=23.68 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=34.0
Q ss_pred HHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCCc-eEEEecC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADKR-KVMFYND 207 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~~-rivf~ND 207 (290)
+|.+|..+ +| ++.+|.+. -+.+-..|+.|++.|-|...+.+.|+- ..|..-+
T Consensus 42 iL~~l~~~-----~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 98 (144)
T 3f3x_A 42 ILKATSEE-----PR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITP 98 (144)
T ss_dssp HHHHHHHS-----CE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred HHHHHHHC-----CC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECH
Confidence 45555553 34 67776664 467889999999999998776665432 3344333
No 99
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.76 E-value=70 Score=25.16 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEE
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv 193 (290)
..||.+|+.. +.+++.+|.+. -+.|...|+.|+++|-|.-.
T Consensus 11 ~~il~~L~~~-----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 11 RGILEALMGN-----ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHC-----TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 4689999884 68999998884 56688999999999988643
No 100
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=27.55 E-value=57 Score=32.46 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhc-----CCceEEeeCCeEEeccCC-C-----
Q psy14236 75 VLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQN-----NPKIEVIEGNKYIFKPVF-K----- 143 (290)
Q Consensus 75 ~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~-----npKI~~~p~~~f~yKP~y-~----- 143 (290)
....|+.||+++ ..+|..+|...+++ +...- ...| ..|.. ..=|+-. .++|.-.|.+ .
T Consensus 431 ~~~~iL~~l~~~------~~it~~~la~~l~~-s~~~~-~~~L--~~L~~~~~~~~glie~~-g~~y~L~~~~~~~~~~~ 499 (583)
T 3lmm_A 431 RIAIVLYLLFQR------PFITIDVVARGLQS-GKEAA-RNAL--EAARQTTVAGAPLIIAH-DGVWLLGNACREILRKV 499 (583)
T ss_dssp HHHHHHHHHHHS------SSBCHHHHHHHHTS-CHHHH-HHHH--HHHHTCEETTEESEEEE-TTEEEECHHHHHHHTSC
T ss_pred hHHHHHHHHHHC------CCcCHHHHHHHhCc-CHHHH-HHHH--HHHHhhhccccceEEEe-CCEEEECHHHHHHhccc
Confidence 456899999995 58999999999875 32222 2344 46766 4445554 4677765531 0
Q ss_pred -------C--------CCHHHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEE
Q psy14236 144 -------I--------KDRKGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEII 191 (290)
Q Consensus 144 -------I--------k~k~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Il 191 (290)
+ .-++-++++|+.+ |.|+-.|+.+- .+.+-..|.+|.++|.|.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~I~~~l~~~-----g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~ 561 (583)
T 3lmm_A 500 EPSPFSPVRYLSTDQAELTNAAMLWLSEV-----GDLATSDLMAMCGVSRGTAKACVDGLVDEERVV 561 (583)
T ss_dssp C------------------------------------------------------------------
T ss_pred ccccccccccccCChhHHHHHHHHHHHHc-----CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 1 1123477888886 68999998883 356888999999988864
No 101
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=27.52 E-value=26 Score=28.48 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCCceEEEecCCCCCCCCCHHHHHH
Q psy14236 146 DRKGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKL 221 (290)
Q Consensus 146 ~k~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND~~~~~~VD~EFk~l 221 (290)
..-.+|.+|.. +++++.+|.+. -+.+-..|+.|++.|-|...+ .+...++..++.... .+-+-|..+
T Consensus 59 ~R~~IL~~L~~------~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~--~Gr~~~y~lt~~~~~-~l~~~l~~~ 129 (151)
T 3f6v_A 59 TRRRLVQLLTS------GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK--DGRFRYYRLDPQGLA-QLRALFDSF 129 (151)
T ss_dssp HHHHHHHHGGG------CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE--ETTEEEEEECHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHh------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--cCCEEEEEEChHHHH-HHHHHHHHH
Confidence 34667888873 67899998874 456889999999988777543 244444444443321 233334455
Q ss_pred hhh
Q psy14236 222 WRS 224 (290)
Q Consensus 222 W~~ 224 (290)
|..
T Consensus 130 ~~~ 132 (151)
T 3f6v_A 130 WID 132 (151)
T ss_dssp SCH
T ss_pred HHH
Confidence 543
No 102
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=27.51 E-value=1.2e+02 Score=23.13 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHHHhcccCCCCc--cchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCC--CCceEEEecC
Q psy14236 149 GLLKLLKQHDLKGIGG--ILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPA--DKRKVMFYND 207 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~G--I~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~--~~~rivf~ND 207 (290)
.+|.+|..+ +| +++.+|.+. -+.|-..|+.|++.|-|....... ++...+|.-.
T Consensus 30 ~il~~L~~~-----~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~ 91 (123)
T 3r0a_A 30 NVMKSFLNE-----PDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIY 91 (123)
T ss_dssp HHHHHHHHS-----TTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEEC
T ss_pred HHHHHHHHC-----CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecC
Confidence 467777664 34 888887765 477889999999999887554332 3345555443
No 103
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=27.48 E-value=42 Score=25.84 Aligned_cols=30 Identities=10% Similarity=0.339 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc
Q psy14236 73 FGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ 106 (290)
Q Consensus 73 ~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~ 106 (290)
...+..|++||..+. ..+++++||.+.+++
T Consensus 10 ~~~i~~~~~~i~~~~----~~~~sl~~lA~~~~~ 39 (129)
T 1bl0_A 10 AITIHSILDWIEDNL----ESPLSLEKVSERSGY 39 (129)
T ss_dssp HHHHHHHHHHHHTTT----TSCCCCHHHHHHSSS
T ss_pred HHHHHHHHHHHHHcc----CCCCCHHHHHHHHCc
Confidence 356889999999874 568999999999876
No 104
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=27.41 E-value=61 Score=24.91 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=28.1
Q ss_pred HHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC
Q psy14236 150 LLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK 199 (290)
Q Consensus 150 LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~ 199 (290)
+|.+|..++ +|+++.||.+. -+.+-..|+.|++.|-|...+.+.|+
T Consensus 44 vL~~l~~~~----~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 44 VLVLACEQA----EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp HHHHHHHST----TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred HHHHHHhCC----CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 455555431 46788887775 46788999999999988755444433
No 105
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=27.13 E-value=59 Score=24.83 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYND 207 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND 207 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|...+.+.|+ ...|..-+
T Consensus 44 ~iL~~l~~~-----~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~ 102 (148)
T 3nrv_A 44 RIISVLSSA-----SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTE 102 (148)
T ss_dssp HHHHHHHHS-----SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECH
T ss_pred HHHHHHHcC-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECH
Confidence 466667664 588888877754 5688999999999988765554433 33343333
No 106
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=26.61 E-value=1.4e+02 Score=21.27 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=29.6
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEE
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv 193 (290)
-.+|.+|.. +++++.||.+. -+.+-..|+.|++.|-|...
T Consensus 26 ~~Il~~L~~------~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 26 LQILCMLHN------QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHHHHHTTT------SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 356666654 68899998885 45688899999998876643
No 107
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=26.23 E-value=86 Score=24.89 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=29.1
Q ss_pred CccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCC
Q psy14236 163 GGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKS 209 (290)
Q Consensus 163 ~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~ 209 (290)
+|+++.||.+.. +.+-..|+.|++.|-|...+.+.|+ ...|..-+.+
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G 118 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKA 118 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGG
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHH
Confidence 568888877754 6688999999999988765555443 4455555544
No 108
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=25.98 E-value=94 Score=24.32 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEe
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~ 194 (290)
..+|.+|+.. +++++.+|.+. -+.|-..|+.|++.|-|.-.+
T Consensus 10 ~~iL~~L~~~-----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 10 RILVRELAAD-----GRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHC-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 3688999874 67999998884 466889999999999885443
No 109
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.93 E-value=59 Score=24.77 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCC-ceEEEec
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADK-RKVMFYN 206 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~N 206 (290)
.+|.+|..+ ..+|+++.||.+. .+.+-..|+.|++.|-|...+.+.|+ ...|+.-
T Consensus 41 ~vL~~l~~~---~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT 100 (127)
T 2frh_A 41 AVLTYISEN---KEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVN 100 (127)
T ss_dssp HHHHHHHHT---CCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECC
T ss_pred HHHHHHHhc---cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 356666653 2368889998874 47888999999999977644444333 3444433
No 110
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=25.61 E-value=73 Score=24.45 Aligned_cols=40 Identities=23% Similarity=0.411 Sum_probs=30.3
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEE
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv 193 (290)
.|+.++... +++++.+|.+.. +.+-..|+.|++.|-|...
T Consensus 12 ~i~~l~~~~-----~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 12 QIYMLIEEK-----GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHH-----SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhhc-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 345555443 689999998876 7788999999998877643
No 111
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=25.61 E-value=1.9e+02 Score=23.76 Aligned_cols=87 Identities=10% Similarity=0.171 Sum_probs=58.3
Q ss_pred CHHHHHHHHHhcccCCCCccchhhhHhhhh-----hHHHHHHHhhhCCcEEEEecCC-----CCceEEEecCCCC-----
Q psy14236 146 DRKGLLKLLKQHDLKGIGGILLDDVRESLP-----HCEKALKHLSLQNEIIYVTRPA-----DKRKVMFYNDKSA----- 210 (290)
Q Consensus 146 ~k~~LL~lL~~~~q~~~~GI~v~dLkD~~p-----~~~~~I~~Le~e~~Ilvv~~~~-----~~~rivf~ND~~~----- 210 (290)
+...+|.+|-.++ .+-+++.+|.+..| .+-..|+.|++.|-|-.+.... +.|...|.=-+..
T Consensus 30 tR~~IL~~Ll~~p---~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~ 106 (151)
T 3u1d_A 30 TRLDVLHQILAQP---DGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLR 106 (151)
T ss_dssp HHHHHHHHHHHST---TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHH
Confidence 5667888888763 23478899988555 5778899999999998775332 4566666532211
Q ss_pred ---CCCCCHHHHHHhhhcccCCCChhhHHHHH
Q psy14236 211 ---QLDLDEDFQKLWRSISVDGMDNDKIKEYL 239 (290)
Q Consensus 211 ---~~~VD~EFk~lW~~v~VP~~de~di~~~L 239 (290)
.+...+.++.|+..|.-+ ++|+++-
T Consensus 107 ~y~~la~~~alr~l~~~v~~t----~~~~~~~ 134 (151)
T 3u1d_A 107 AVSMYEEAAVWRSVYEQMERT----DRIEAIE 134 (151)
T ss_dssp HTTCSTHHHHTHHHHHHSCCC----HHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHhhcc----HHHHHHh
Confidence 133456778888888655 4677764
No 112
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=24.90 E-value=1e+02 Score=23.99 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=32.8
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEE
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIY 192 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilv 192 (290)
..+|.+|+.. +.+++.||.+. -+.|-..|+.|+++|-|.-
T Consensus 8 ~~il~~L~~~-----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 8 LNIIEELKKD-----SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHC-----SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3689999874 67999998885 5678899999999998863
No 113
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=24.48 E-value=1.7e+02 Score=21.47 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEe
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~ 194 (290)
-.+|.+|.. +++++.||.+. -+.+-..|+.|++.|-|...+
T Consensus 29 ~~IL~~L~~------~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 29 IRIMELLSV------SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHHHHH------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHh------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 357777763 57889998875 456889999999888877554
No 114
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=24.29 E-value=55 Score=25.65 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEE
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIY 192 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilv 192 (290)
..+|.+|+.. +++++.+|.+. -+.|-..|+.|+++|-|.-
T Consensus 6 ~~il~~L~~~-----~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 6 LRILKILQYN-----AKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTTC-----TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4678888874 57999998884 5668899999999988753
No 115
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=23.89 E-value=59 Score=26.66 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=33.7
Q ss_pred CCeEEeccCC--CCCC-HHHHHHHHHhcccCCCCccchhhhHh----hhhhHHHHHHHhhhCCcEEE
Q psy14236 133 GNKYIFKPVF--KIKD-RKGLLKLLKQHDLKGIGGILLDDVRE----SLPHCEKALKHLSLQNEIIY 192 (290)
Q Consensus 133 ~~~f~yKP~y--~Ik~-k~~LL~lL~~~~q~~~~GI~v~dLkD----~~p~~~~~I~~Le~e~~Ilv 192 (290)
.|+|.+...- .+.. -..||.+|+.. +.+++.||.+ +-+.|...|+.|+++|-|..
T Consensus 12 ~~~~~~~~~m~~~ld~~d~~IL~~L~~~-----~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 12 SGLVPRGSHMRVPLDEIDKKIIKILQND-----GKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp ------------CCCHHHHHHHHHHHHC-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred ccccccccccccCCCHHHHHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 3666665542 2322 23689999884 5799999888 45678899999999987753
No 116
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=23.51 E-value=67 Score=24.92 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=22.7
Q ss_pred CccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecC
Q psy14236 163 GGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRP 196 (290)
Q Consensus 163 ~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~ 196 (290)
+|+++.+|.+. -+.+-..|+.|++.|-|.....+
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~ 99 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHG 99 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCC
Confidence 46667666664 35788999999999887754444
No 117
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=23.33 E-value=1.3e+02 Score=25.25 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=45.0
Q ss_pred CCcchhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeCCeEEe
Q psy14236 67 GSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIF 138 (290)
Q Consensus 67 g~~~~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~~~f~y 138 (290)
|-+..+......|++||+ . .|+|..+|...||+ +-...+|.. -.|..+-.|.=..-|+-.|
T Consensus 4 k~Td~v~erk~~ILE~Lk-~------G~~~t~~Iak~LGl---Shg~aq~~L-y~LeREG~V~~Vk~GK~ay 64 (165)
T 2vxz_A 4 GHSREVLVRLRDILALLA-D------GCKTTSLIQQRLGL---SHGRAKALI-YVLEKEGRVTRVAFGNVAL 64 (165)
T ss_dssp -CCHHHHHHHHHHHHHHT-T------CCEEHHHHHHHHTC---CHHHHHHHH-HHHHHTTSCEEEEETTEEE
T ss_pred chhHHHHHHHHHHHHHHH-h------CCccHHHHHHHhCC---cHHHHHHHH-HHHHhcCceEEEEEccEEE
Confidence 455668889999999999 4 59999999999865 555556765 5677777776554565555
No 118
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=22.97 E-value=3.2e+02 Score=22.58 Aligned_cols=113 Identities=8% Similarity=0.035 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHh---hhcCCCCCC-CcCHHHHHHhhcc------CCCCchhHHHHhHHhhh-----cCCceEEee--CCe
Q psy14236 73 FGVLAKIVKHMK---QRHQDGDDH-PLTIDEILDETNQ------LDVGNKVKIWLSTEALQ-----NNPKIEVIE--GNK 135 (290)
Q Consensus 73 ~t~l~~iV~~LK---~r~~~g~~~-pltl~eIl~~l~~------~di~~~~~~~L~~e~L~-----~npKI~~~p--~~~ 135 (290)
.-.-..|++++. .......+. -+++.|+...++- --|+++. ++ .|.+ ++|.+.... .|.
T Consensus 14 ~ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g~~lISp~D--l~--~A~~~l~~Lg~~~~~l~~~~sg~ 89 (169)
T 1u5t_B 14 DEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPME--MR--EACERFEHLGLNELKLVKVNKRI 89 (169)
T ss_dssp HHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHH--HH--HHHTTTGGGTCCSCEEEEETTTE
T ss_pred HHHHHHHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCCCCccCHHH--HH--HHHHHHHhcCCCeEEEEEECCee
Confidence 333446777777 312222235 6788887776642 2445443 22 2222 345344433 566
Q ss_pred EEeccCCCCCCHHHHHHHHHhcccCCCCc----cchh-h-hH--hhhhh--HHHHHHHhhhCCcEEEE
Q psy14236 136 YIFKPVFKIKDRKGLLKLLKQHDLKGIGG----ILLD-D-VR--ESLPH--CEKALKHLSLQNEIIYV 193 (290)
Q Consensus 136 f~yKP~y~Ik~k~~LL~lL~~~~q~~~~G----I~v~-d-Lk--D~~p~--~~~~I~~Le~e~~Ilvv 193 (290)
+.-...+.-...+.+|++++.. . +. ++.. + |. -+|+- |.+.|+.++++|-+++=
T Consensus 90 ~V~~~~~~d~~~~~il~~~~~~--~--g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D 153 (169)
T 1u5t_B 90 LCVTSEKFDVVKEKLVDLIGDN--P--GSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLID 153 (169)
T ss_dssp EEEESSCSHHHHHHHHHHHHHS--C--SBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEeCCChhHHHHHHHHHHHhc--C--CCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE
Confidence 5553333212335688888863 1 34 5555 5 44 36665 77899999999988854
No 119
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=22.68 E-value=80 Score=27.04 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchh
Q psy14236 74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKV 113 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~ 113 (290)
-|+..+++|++.+ ..++...+...++|+ .|.-+.
T Consensus 86 ~Qv~AAl~yl~~~-----~~~id~~~Fe~~cGV-GV~VT~ 119 (187)
T 3tl4_X 86 LQVDAAFKYVKAN-----GEASTKMGMNENSGV-GIEITE 119 (187)
T ss_dssp HHHHHHHHHHHHH-----GGGCCHHHHHHTTTT-TCCCCH
T ss_pred HHHHHHHHHHHhC-----CCCCCHHHHHHHCCC-CeEeCH
Confidence 5899999999986 478999999999998 444433
No 120
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=22.63 E-value=1.7e+02 Score=22.19 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEEecCCCCceEEEecC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYVTRPADKRKVMFYND 207 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv~~~~~~~rivf~ND 207 (290)
.+|.+|... +++++.||.+. -+.+-..|+.|++.|-|... ..++...+..++
T Consensus 46 ~IL~~L~~~-----~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~--~~gr~~~y~l~~ 101 (122)
T 1u2w_A 46 KITYALCQD-----EELCVCDIANILGVTIANASHHLRTLYKQGVVNFR--KEGKLALYSLGD 101 (122)
T ss_dssp HHHHHHHHS-----SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC------CCEEEESC
T ss_pred HHHHHHHHC-----CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE--EECCEEEEEECH
Confidence 577888753 67899998874 56788999999988877643 224333444444
No 121
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=22.31 E-value=98 Score=25.85 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=35.5
Q ss_pred HHHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCC
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDK 208 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~ 208 (290)
.+|.+|..+ +|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+ ...|+.-+.
T Consensus 52 ~iL~~L~~~-----~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~ 111 (207)
T 2fxa_A 52 HILWIAYQL-----NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEE 111 (207)
T ss_dssp HHHHHHHHH-----TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHH
T ss_pred HHHHHHHHC-----CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHH
Confidence 356666664 578888888754 5688899999999988766555433 445555444
No 122
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=22.09 E-value=67 Score=23.95 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcccCCCCccchhhhHhhhhh-----HHHHHHHhhhCCcEEEEe
Q psy14236 147 RKGLLKLLKQHDLKGIGGILLDDVRESLPH-----CEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 147 k~~LL~lL~~~~q~~~~GI~v~dLkD~~p~-----~~~~I~~Le~e~~Ilvv~ 194 (290)
++.+|++|+... ....-..++|+....|+ +.+++++|..|+.+.+..
T Consensus 5 K~~Ile~l~~k~-~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~leywS 56 (78)
T 1ucr_A 5 KQKVVDFLNSKS-GSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWS 56 (78)
T ss_dssp HHHHHHHHSSHH-HHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcc-cccccchHHHHHHHccccCHHHHHHHHHHHHhcCceEEEe
Confidence 567888888751 12345678899988887 579999999999987764
No 123
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=21.78 E-value=2e+02 Score=24.06 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=31.9
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEEE
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIYV 193 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilvv 193 (290)
..+|.+|+. +++++.+|.+. -+.|-..|+.|++.|-|...
T Consensus 23 ~~IL~~L~~------~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLRN------KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHTT------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 457888862 57999998874 46688999999999988765
No 124
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=21.68 E-value=2.4e+02 Score=21.18 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccCCCCccchhhhHh----hhhhHHHHHHHhhhCCcEEEEe
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRE----SLPHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD----~~p~~~~~I~~Le~e~~Ilvv~ 194 (290)
-.+|.+|.. +++++.||.+ +-+.+-..|+.|++.|-|...+
T Consensus 24 ~~IL~~L~~------~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 24 CRILVALLD------GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHHT------TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 467777764 4577788877 4566889999999988776543
No 125
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=21.60 E-value=1.5e+02 Score=25.04 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=36.5
Q ss_pred HHHHHHHHhcccCCCCccchhhhHh----hhhhHHHHHHHhhhCCcEEEEecCC--CCceEEEe
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRE----SLPHCEKALKHLSLQNEIIYVTRPA--DKRKVMFY 205 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD----~~p~~~~~I~~Le~e~~Ilvv~~~~--~~~rivf~ 205 (290)
-.+|.+|.. +++++.+|.+ +.+.+-..|+.|++.|-|-..+... ++++++|.
T Consensus 18 l~IL~~L~~------~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~ 75 (202)
T 2p4w_A 18 RRILFLLTK------RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYM 75 (202)
T ss_dssp HHHHHHHHH------SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEE
T ss_pred HHHHHHHHh------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEE
Confidence 357778853 5788888877 4567889999999999888765431 34444444
No 126
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=21.57 E-value=45 Score=29.16 Aligned_cols=58 Identities=12% Similarity=0.218 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeC-CeEEeccC
Q psy14236 75 VLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEG-NKYIFKPV 141 (290)
Q Consensus 75 ~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~-~~f~yKP~ 141 (290)
....|+++|-.. +.++|+.||...+++ ..+.-+ .+| ..|...-=|..+++ |+|.-=|.
T Consensus 7 Ral~IL~~l~~~-----~~~lsl~eia~~lgl-~ksT~~-RlL--~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 7 KALTLLTYFNHG-----RLEIGLSDLTRLSGM-NKATVY-RLM--SELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp HHHHHHTTCBTT-----BSEEEHHHHHHHHCS-CHHHHH-HHH--HHHHHTTSEEECSSSSEEEECTT
T ss_pred HHHHHHHHHhhC-----CCCCCHHHHHHHHCc-CHHHHH-HHH--HHHHHCCCEEEcCCCCcEEcCHH
Confidence 344566666553 579999999999987 555444 456 57999999999875 78776554
No 127
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.40 E-value=1.1e+02 Score=23.87 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=32.5
Q ss_pred HHHHHHHHhcccCCCCccchhhhHhh----hhhHHHHHHHhhhCCcEEE
Q psy14236 148 KGLLKLLKQHDLKGIGGILLDDVRES----LPHCEKALKHLSLQNEIIY 192 (290)
Q Consensus 148 ~~LL~lL~~~~q~~~~GI~v~dLkD~----~p~~~~~I~~Le~e~~Ilv 192 (290)
..+|.+|+.. +.+++.||.+. -+.|...|+.|+++|-|.-
T Consensus 12 ~~il~~L~~~-----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 12 MQLVKILSEN-----SRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHC-----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3688999884 68999999885 4568899999999998863
No 128
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=21.30 E-value=91 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEeeC-CeEEecc
Q psy14236 74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEG-NKYIFKP 140 (290)
Q Consensus 74 t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~p~-~~f~yKP 140 (290)
.....|+++|... ..++++.||...+++ ..+.-+ ..| ..|...-=|..+++ ++|.--|
T Consensus 6 ~r~l~iL~~l~~~-----~~~~s~~ela~~~gl-~~stv~-r~l--~~L~~~G~v~~~~~~~~Y~lg~ 64 (241)
T 2xrn_A 6 ARAASIMRALGSH-----PHGLSLAAIAQLVGL-PRSTVQ-RII--NALEEEFLVEALGPAGGFRLGP 64 (241)
T ss_dssp HHHHHHHHHHHTC-----TTCEEHHHHHHHTTS-CHHHHH-HHH--HHHHTTTSEEECGGGCEEEECS
T ss_pred HHHHHHHHHHHhC-----CCCCCHHHHHHHHCc-CHHHHH-HHH--HHHHHCCCEEEeCCCCeEEECH
Confidence 3456677888654 468999999999987 444433 455 58999988998874 7766544
No 129
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=21.00 E-value=1.5e+02 Score=24.86 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHhcccCCCCccchhhhHhhhhhHHHHHHHhhhCCcEEEEecCCCCc-eEEEecCCC
Q psy14236 142 FKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKR-KVMFYNDKS 209 (290)
Q Consensus 142 y~Ik~k~~LL~lL~~~~q~~~~GI~v~dLkD~~p~~~~~I~~Le~e~~Ilvv~~~~~~~-rivf~ND~~ 209 (290)
+.|.+.++|+++|+. .|+.|. =..+-.||++|. ++=+++.++.- +.+.+++..
T Consensus 32 ~~I~tQeEL~~~L~~------~Gi~vT-----QATlSRDikEL~----lvKv~~~~G~~~~Y~lp~~~~ 85 (170)
T 3lap_A 32 AQVRSQNELAALLAA------EGIEVT-----QATLSRDLEELG----AVKLRGADGGTGIYVVPEDGS 85 (170)
T ss_dssp SCCCSHHHHHHHHHH------TTCCCC-----HHHHHHHHHHHT----CEEECCTTCTTCEEECCC---
T ss_pred CCCCCHHHHHHHHHH------cCCCcC-----chhHHHHHHHcC----cEEeecCCCCEEEEEECcccc
Confidence 579999999999999 477763 356778999996 22244444554 666666654
No 130
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=20.90 E-value=87 Score=24.16 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=28.1
Q ss_pred CccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecCCCC-ceEEEecCCC
Q psy14236 163 GGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRPADK-RKVMFYNDKS 209 (290)
Q Consensus 163 ~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~~~~-~rivf~ND~~ 209 (290)
+|+++.+|.+.. +.+-..|+.|++.|-|.....+.|+ ...|+..+.+
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G 112 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAG 112 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHH
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhH
Confidence 567777777654 5788999999999888755444333 3444444443
No 131
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=20.85 E-value=71 Score=29.34 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEe
Q psy14236 76 LAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVI 131 (290)
Q Consensus 76 l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~ 131 (290)
...++++|+++ +.|.|++||.++-.+.+.+-+-...| +-|-...=|+..
T Consensus 224 ~~~Ll~~m~ek-----~~~wS~~Ei~~~p~~~~~~idle~iL--~~Lv~k~lI~~~ 272 (290)
T 3c18_A 224 GKYLFEVMRER-----DRPWTMHELMEESRLTELKVDLGSLV--DFFIRKGLIRIS 272 (290)
T ss_dssp HHHHHHHHTTS-----SSCEEHHHHHHCGGGGGGHHHHHHHH--HHHHHTTSEEEE
T ss_pred HHHHHHHHHhc-----CCCCCHHHHhcCcccccccCCHHHHH--HHHHHcCCeEEe
Confidence 46789999998 78999999999988866666665556 566666655554
No 132
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=20.74 E-value=79 Score=24.64 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=38.6
Q ss_pred eccCCCCCCHHH-HHHHHHhcccCCCCccchhhhHhhh----hhHHHHHHHhhhCCcEEEEecC
Q psy14236 138 FKPVFKIKDRKG-LLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKHLSLQNEIIYVTRP 196 (290)
Q Consensus 138 yKP~y~Ik~k~~-LL~lL~~~~q~~~~GI~v~dLkD~~----p~~~~~I~~Le~e~~Ilvv~~~ 196 (290)
+-..+++.+.+= +|-+|.++.+.+..+++.++|.+.. ..|...|+.|++.|-|-...+.
T Consensus 24 ~y~~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 24 HYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp TTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEE
Confidence 333556655442 5555655544455678999998854 5688999999998887755444
No 133
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.58 E-value=62 Score=24.15 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhccCCCCchhHHHHhHHhhhcCCceEEe
Q psy14236 71 YKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVI 131 (290)
Q Consensus 71 ~~~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~~di~~~~~~~L~~e~L~~npKI~~~ 131 (290)
..+.....|+++|+.+ . +|+.||..++++ ..+. ..+.| ..|...--|...
T Consensus 14 ~~~~~~~~IL~lL~~~------g-~sa~eLAk~Lgi-Sk~a-Vr~~L--~~Le~eG~I~~~ 63 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIE------G-ATAAQLTRQLNM-EKRE-VNKAL--YDLQRSAMVYSS 63 (82)
T ss_dssp CSHHHHHHHHHHHSSS------T-EEHHHHHHHSSS-CHHH-HHHHH--HHHHHHTSSEEC
T ss_pred chHHHHHHHHHHHHHc------C-CCHHHHHHHHCc-CHHH-HHHHH--HHHHHCCCEEeC
Confidence 4678899999999963 2 999999999987 2222 12334 356555555554
No 134
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=20.51 E-value=1.9e+02 Score=22.07 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.6
Q ss_pred HHHHHHHhcccCCCCccchhhhHh----hhhhHHHHHHHhhhCCcEEEEe
Q psy14236 149 GLLKLLKQHDLKGIGGILLDDVRE----SLPHCEKALKHLSLQNEIIYVT 194 (290)
Q Consensus 149 ~LL~lL~~~~q~~~~GI~v~dLkD----~~p~~~~~I~~Le~e~~Ilvv~ 194 (290)
.+|.+|.. +++++.+|.+ +-+.+-..|+.|++.|-|..-+
T Consensus 50 ~IL~~L~~------~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 50 RLLSLLAR------SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHHHHHTT------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 46666643 5678888877 4567889999999988777543
No 135
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.48 E-value=1.3e+02 Score=23.35 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcCHHHHHHhhcc--CCCCchhH-HHHhHHhhhcCCceEEee--CCeEEec
Q psy14236 73 FGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQ--LDVGNKVK-IWLSTEALQNNPKIEVIE--GNKYIFK 139 (290)
Q Consensus 73 ~t~l~~iV~~LK~r~~~g~~~pltl~eIl~~l~~--~di~~~~~-~~L~~e~L~~npKI~~~p--~~~f~yK 139 (290)
-.|=..|+++|... +.|+|.+||.+.+.- ..++..+- .-| +.|...--|.-.. +|...|-
T Consensus 10 T~qR~~Il~~l~~~-----~~~~sa~ei~~~l~~~~~~is~~TVYR~L--~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 10 TRQRAAISTLLETL-----DDFRSAQELHDELRRRGENIGLTTVYRTL--QSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp HHHHHHHHHHHHHC-----CSCEEHHHHHHHHHHTTCCCCHHHHHHHH--HHHHTTTSEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCCHhhHHHHH--HHHHHCCCEEEEEeCCCceEEE
Confidence 34456788999875 579999999999842 13333322 344 5777777665443 5655554
No 136
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.11 E-value=1e+02 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=31.3
Q ss_pred CCHHHHHHhhhcccCCCChhhHHHHHHHcCCCCc
Q psy14236 214 LDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPI 247 (290)
Q Consensus 214 VD~EFk~lW~~v~VP~~de~di~~~L~~~Glkp~ 247 (290)
-+++++.+|.+-.+..+.-.+|..+|...||++.
T Consensus 48 s~~~i~~l~~~g~L~kltV~eLK~~l~~~gL~~~ 81 (151)
T 1jjr_A 48 SEEELKTHISKGTLGKFTVPMLKEACRAYGLKSG 81 (151)
T ss_dssp SSHHHHHHHHHTCTTSSCHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHcCcHHhccHHHHHHHHHHcCCCCc
Confidence 5899999999999999999999999999998864
Done!