RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14236
(290 letters)
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 141 bits (357), Expect = 1e-43
Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 64 SMSGSSQYKFGVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQ 123
++SGSS YKFGVLAKIV +MK RHQ GD HPLT+DEILDET LD+G K K WL TEAL
Sbjct: 1 ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALV 60
Query: 124 NNPKIEVIEGNKYIFKPVFKIK 145
NNPKIEVI+G KY FKP + ++
Sbjct: 61 NNPKIEVIDG-KYAFKPKYNVR 81
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon
Sulfolobus solfataricus [TaxId: 2287]}
Length = 130
Score = 32.0 bits (72), Expect = 0.033
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 141 VFKIKDRKGLLKLLKQHDLKGIGGILLD--DVRESLPHCEKALKHLSLQ----NEIIYVT 194
V+ K R+ L K + + + HL + Y+
Sbjct: 17 VWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVNCPPRYAPSYLA 76
Query: 195 RPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIR 245
+ K QL+ + + + + + + ++ IK+Y+E+Q +
Sbjct: 77 NYFKGKSARLILKKFPQLNKGKLWTRSYFVATAGNVSSEVIKKYIEEQWRK 127
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177
{Deinococcus radiodurans [TaxId: 1299]}
Length = 130
Score = 28.1 bits (62), Expect = 0.71
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 10/112 (8%)
Query: 141 VFKIKDRKGLLKLLKQHDLKGIGGILLD--DVRESLPHCEKALKHLSLQ----NEIIYVT 194
++ K R +L LK I + + HL L + I
Sbjct: 16 IWATKYRHQVLVDEVADGLKDILRDIATQNGLELVALEVMPDYVHLLLGATPQHVIPDFV 75
Query: 195 RPADKRKVMFYNDKSAQLDLDEDFQKLWR----SISVDGMDNDKIKEYLEKQ 242
+ L LW ++V +I++Y+E Q
Sbjct: 76 KALKGASARRMFSAFPHLKQPHWGGNLWNPSYCVLTVSEHTRAQIQQYIENQ 127
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter
pylori [TaxId: 210]}
Length = 125
Score = 27.4 bits (60), Expect = 1.1
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 141 VFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKR 200
V+ K R+ +L + LK I + ++R + + H+ + +I
Sbjct: 17 VWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFGVMKFI 76
Query: 201 KVMFYND----KSAQLDLDEDFQKLWR----SISVDGMDNDKIKEYLE 240
K + L LW +V G + +K+Y+E
Sbjct: 77 KTAKGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIE 124
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 27.2 bits (60), Expect = 1.4
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 225 ISVDGMDNDKIKEYLEKQGIRP---IQDHGF 252
I + G I ++L + G+ ++ HGF
Sbjct: 96 IQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126
>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 360
Score = 27.3 bits (59), Expect = 2.6
Identities = 24/184 (13%), Positives = 51/184 (27%), Gaps = 18/184 (9%)
Query: 81 KHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIWLSTEALQNNPKIEVIEGNKYIFKP 140
K D D + +++TE + I + IF
Sbjct: 146 KWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQ 205
Query: 141 VFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKHLSLQNEIIYVTRPADKR 200
++ + G+ + +++H ++ + H + + + RP +
Sbjct: 206 RSQVTNYLGI-EWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQI 264
Query: 201 KVMFYNDK---SAQLDLDEDFQKLWRSISVDGM--------------DNDKIKEYLEKQG 243
+ + + D LW S M + I++ EK G
Sbjct: 265 DLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLG 324
Query: 244 IRPI 247
I I
Sbjct: 325 ITTI 328
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli
[TaxId: 562]}
Length = 240
Score = 26.5 bits (58), Expect = 4.0
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 175 PHCEKALKHLSLQNEIIYVTRPADK--RKVMFYNDKSAQLDLDEDFQKLWRSISVD 228
++ L ++ QN I+ P + + F + + W+ + D
Sbjct: 177 KAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAAD 232
>d2q3za4 d.3.1.4 (A:146-461) Transglutaminase catalytic domain
{Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Length = 316
Score = 26.4 bits (58), Expect = 4.7
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 74 GVLAKIVKHMKQRHQDGDDHPLTIDEILDETNQLDVGNKVKIW 116
G+ ++V + H + L I+ +E ++ IW
Sbjct: 147 GIPTRVVTNYNSAH--DQNSNLLIEYFRNEFGEIQGDKSEMIW 187
>d1ogla_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 270
Score = 26.0 bits (56), Expect = 6.0
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 203 MFYNDKSAQLDLDEDFQKLWRSISVDGMDNDKIKEYLEKQGIRPI-QDHGFKKPVLPGRK 261
F N D ++ +D + + Y+ K + I Q G+K+
Sbjct: 151 TFRNIIQLASIYRFDLITKGLLLAAQDLDFNLVGYYVAKYTLNQIRQLKGYKEG------ 204
Query: 262 KNMNRKKQFKKPRDNEHLADVLEN 285
K + DNE L + +++
Sbjct: 205 ---VYVKVREGVEDNELLHECVQS 225
>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
{Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 321
Score = 25.9 bits (57), Expect = 6.1
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 92 DHPLTIDEILDETNQLDVGNKVKIW 116
D L++D D +W
Sbjct: 163 DRNLSVDVYYDPMGNPLDKGSDSVW 187
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans
[TaxId: 266]}
Length = 99
Score = 24.5 bits (53), Expect = 6.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 125 NPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQ 156
NPK V++G K F + KI+DR L+ L+
Sbjct: 67 NPK-AVVKGTKMAFAGLPKIEDRANLIAYLEG 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.369
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,053,908
Number of extensions: 49779
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 21
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.3 bits)