BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14237
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust.
Identities = 239/306 (78%), Positives = 273/306 (89%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
ML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE +YED MDLIAKLP VA
Sbjct: 127 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAKLPCVA 186
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 187 AKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAH 246
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ++VG +VS+EKL+++IW
Sbjct: 247 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIW 306
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 307 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGK 366
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 367 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 426
Query: 301 TNDLVK 306
T+ L+K
Sbjct: 427 TDGLIK 432
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 519 bits (1337), Expect = e-148, Method: Compositional matrix adjust.
Identities = 239/306 (78%), Positives = 273/306 (89%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
ML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE +YED MDLIAKLP VA
Sbjct: 127 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAKLPCVA 186
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 187 AKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAH 246
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ++VG +VS+EKL+++IW
Sbjct: 247 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIW 306
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 307 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGK 366
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 367 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 426
Query: 301 TNDLVK 306
T+ L+K
Sbjct: 427 TDGLIK 432
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 513 bits (1321), Expect = e-146, Method: Compositional matrix adjust.
Identities = 237/306 (77%), Positives = 271/306 (88%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
ML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKLP VA
Sbjct: 127 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVA 186
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 187 AKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 246
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+++IW
Sbjct: 247 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIW 306
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 307 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGK 366
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 367 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 426
Query: 301 TNDLVK 306
T L K
Sbjct: 427 TAGLEK 432
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 237/306 (77%), Positives = 271/306 (88%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
ML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKLP VA
Sbjct: 125 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVA 184
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 185 AKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 244
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+++IW
Sbjct: 245 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIW 304
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 305 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGK 364
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 365 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 424
Query: 301 TNDLVK 306
T L K
Sbjct: 425 TAGLEK 430
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/305 (75%), Positives = 262/305 (85%), Gaps = 3/305 (0%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
ML+NFP +LHPMSQ SAAITALNSES FA+AY +G+ ++KYWE VYE +MDLIAKLP VA
Sbjct: 126 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAKLPCVA 185
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 186 AKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAH 245
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL WL +LQ+ G + S L+++IW
Sbjct: 246 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGADAS---LRDYIW 302
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E G
Sbjct: 303 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGA 362
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
NPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 363 AANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 422
Query: 301 TNDLV 305
T+ L+
Sbjct: 423 TDGLI 427
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 229/305 (75%), Positives = 261/305 (85%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
ML+NFP +LHPMSQ SAAITALNSES FA+AY +G+ ++KYWE VYE +MDLIAKLP VA
Sbjct: 127 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAKLPCVA 186
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 187 AKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAH 246
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL WL +LQ+ ++ L+++IW
Sbjct: 247 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAXXXAGADASLRDYIW 306
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E G
Sbjct: 307 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGA 366
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
NPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 367 AANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 426
Query: 301 TNDLV 305
T+ L+
Sbjct: 427 TDGLI 431
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 146/318 (45%), Gaps = 43/318 (13%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYND-GVHKSKYWEYVYEDSMDLIAKLPVV 59
N F HPM+ + AL S F ND + ++ +M LIAK+P +
Sbjct: 128 FFNGFRRDAHPMAILCGTVGAL---SAFYPDANDIAIPANRDLA-----AMRLIAKIPTI 179
Query: 60 AATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDH 112
AA Y+ T G+ + +++ NF SM+ N M L +H+DH
Sbjct: 180 AAWAYKYT--QGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADH 237
Query: 113 EGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSE 172
E N S TV L GS ++P+ AAG+ L GP HG AN+ VL L ++ ++
Sbjct: 238 EQ-NASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKK------- 289
Query: 173 EKLKEFIWNT--LKSGQVVPGYGHAVLRKTDPR-----YTCQREFAQKHLPDDSLFKLVS 225
E + FI SG + G+GH V + DPR TC + + DD L L
Sbjct: 290 ENIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAV 349
Query: 226 QVYKVVPPVLIETGKVKNP-WPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLI 284
++ K+ L + V+ +PNVD +SG++L+ G+ + +TVLF V+R G ++
Sbjct: 350 ELEKI---ALSDDYFVQRKLYPNVDFYSGIILKAMGIP-TSMFTVLFAVARTTGWVSQ-- 403
Query: 285 WDRALGLP---IERPKSL 299
W + P I RP+ L
Sbjct: 404 WKEMIEEPGQRISRPRQL 421
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 20/240 (8%)
Query: 47 EDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWS--ANFTSMLGFDNHQFTELMRL 104
E ++ + + P + A YR + KG I KD S NF M+ + ++ L+
Sbjct: 113 EKAIRVASVFPTILAYYYRYS----KGKELIRPRKDLSHVENFYYMMFGERNEKIRLLES 168
Query: 105 YLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQ 164
+ + + N S ++ S LSD Y + L GPLHG A+++V + +
Sbjct: 169 AFILLMEQDI-NASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKV----PPMLE 223
Query: 165 QVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLV 224
++G SE++++EF+ LK + + G+GH V + DPR + Q+H PD LF++
Sbjct: 224 EIG---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIA 280
Query: 225 SQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLI 284
S++ + I + K+KN +PNVD +S VL + G N +T LF +R +G A +I
Sbjct: 281 SKLEE-----YIVSNKIKNIYPNVDLYSSVLFEELGFPR-NMFTALFATARVVGWTAHVI 334
>pdb|3L96|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L96|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L97|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L97|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L98|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L98|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L99|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
pdb|3L99|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
Length = 426
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 150/319 (47%), Gaps = 43/319 (13%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG--VHKSKYWEYVYEDSMDLIAKLPV 58
+ + F HPM+ AL A Y+D V+ ++ E + L++K+P
Sbjct: 120 LFHAFRRDSHPMAVMCGITGAL------AAFYHDSLDVNNPRHREIA---AFRLLSKMPT 170
Query: 59 VAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHS 110
+AA Y+ + G+ + ++ NF +M+ F N M L +H+
Sbjct: 171 MAAMCYK--YSIGQPFVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHA 227
Query: 111 DHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNV 170
DHE N S TV GS+ ++P+ AAG+ L GP HG AN+ L K+ +++G
Sbjct: 228 DHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAAL----KMLEEIG--- 279
Query: 171 SEEKLKEFIWNTLKSGQV--VPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLV 224
+E + EF+ + G+GH V + DPR T RE + L + D L ++
Sbjct: 280 KKENIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVA 339
Query: 225 SQVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLAS 282
++ + P IE K +PNVD +SG++L+ G+ + +TV+F ++R +G +A
Sbjct: 340 MELENIALNDPYFIE----KKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWIAH 394
Query: 283 LIWDRALGLPIERPKSLST 301
+ G+ I RP+ L T
Sbjct: 395 WSEMHSDGMKIARPRQLYT 413
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 143/308 (46%), Gaps = 29/308 (9%)
Query: 10 HPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQ 69
PM A++ L G+ SK E + LI+K P + A R +
Sbjct: 90 QPMDILRTAVSLL------------GIEDSKNDERTDIKGIKLISKFPTIVANYAR--LR 135
Query: 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGS 127
G I D S NF ML D N ++ M + L +H DHE N S +V S
Sbjct: 136 KGLDIIEPDPKLSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEM-NASTFASLVVAS 194
Query: 128 ALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQ 187
SD Y S AG++ L GPLHG AN E L K+ +++G S EK+ ++I N L + Q
Sbjct: 195 TFSDLYSSIVAGISALKGPLHGGANYEAL----KMFKEIG---SPEKVNDYILNRLSNKQ 247
Query: 188 VVPGYGHAVLRKTDPRYTCQREFAQKHLPDD--SLFKLVSQVYKVVPPVLIETGKVKNPW 245
+ G+GH V + DPR +++A+ + ++ L Q+ + V + I+ K +
Sbjct: 248 RIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLY-QIAEKVEEIGIKYLGPKGIY 306
Query: 246 PNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLV 305
PNVD S ++ G E +++ +F +R +G +A I + I RPK+ ++
Sbjct: 307 PNVDFFSSIVFYSLGF-EPDFFPAVFASARVVGWVAH-IMEYIKDNKIIRPKAYYKGEIG 364
Query: 306 KQYSKIKS 313
K+Y I S
Sbjct: 365 KKYIPIDS 372
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 45/315 (14%)
Query: 5 FPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIY 64
P H HPMS A + L +E +H + E E + +++AK+ +AA Y
Sbjct: 133 MPQHTHPMSSLIAGVNVLAAEH---------IHNGQK-ESQDEVAKNIVAKIATIAAMAY 182
Query: 65 RNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQF------TELMRLYLTIHSDHEGGNVS 118
R+ GK ++ NF M+ D+ + + M +H+DHE N S
Sbjct: 183 RHNH--GKKFLEPKMEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHEQ-NAS 239
Query: 119 AHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEF 178
TV L GS + PY + AG+ L GP HG AN+ VL K+ ++G S E + ++
Sbjct: 240 TSTVRLSGSTGNSPYAAIIAGITALWGPAHGGANEAVL----KMLSEIG---STENIDKY 292
Query: 179 IWNTLKSGQ--VVPGYGHAVLRKTDPRYT-----CQREFAQKHLPDDSLFKLVSQVYKVV 231
I + G+GH V + TDPR T C+ A+ D+ L + ++ ++
Sbjct: 293 IAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKKNCEEILAKLGHSDNPLLTVAKKLEEIA 352
Query: 232 --PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRAL 289
IE + + NVD +SG++L+ G+ E + +T +F ++R G ++ W +
Sbjct: 353 LQDEFFIE----RKLFSNVDFYSGIILKAMGIPE-DMFTAIFALARTSGWISQ--WIEMV 405
Query: 290 GLP---IERPKSLST 301
P I RP+ L T
Sbjct: 406 NDPAQKIGRPRQLYT 420
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 143/293 (48%), Gaps = 32/293 (10%)
Query: 10 HPMSQFSAAITALNS----ESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYR 65
HPM AA+ A + K +A + G +K++ E Y + L+AK+P + A YR
Sbjct: 108 HPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAKMPTIVAYHYR 167
Query: 66 NTFQGGKGIGAIDTNKDW--SANFTSML-GFDNHQFTEL-MRLYLTIHSDHEGGNVSAHT 121
+ +G+ + D +ANF M+ G + + LYL +H+DHE S
Sbjct: 168 FS----RGLEVVRPRDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHEV-PASTFA 222
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWN 181
H+V S LSD Y S AA + L GPLHG AN+ + + ++G + K KE +
Sbjct: 223 AHVVASTLSDLYSSVAAAIAALKGPLHGGANEMAV----RNYLEIG---TPAKAKEIVEA 275
Query: 182 TLK-SGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLVSQV-YKVVPPVL 235
K G + G GH V + DPR +EF++ ++ +LF + S + +V+
Sbjct: 276 ATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRDYVAKFGDPQNLFAIASAIEQEVLSHPY 335
Query: 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLI--WD 286
+ K+ +PNVD SG+ Y G+ Y+T +F +SR +G +A ++ W+
Sbjct: 336 FQQRKL---YPNVDFWSGIAFYYMGIP-YEYFTPIFAMSRVVGWVAHVLEYWE 384
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWB|B Chain B, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWC|A Chain A, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
pdb|1OWC|B Chain B, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
Length = 427
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 43/319 (13%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG--VHKSKYWEYVYEDSMDLIAKLPV 58
+ + F HPM+ AL A Y+D V+ ++ E + L++K+P
Sbjct: 121 LFHAFRRDSHPMAVMCGITGAL------AAFYHDSLDVNNPRHREIA---AFRLLSKMPT 171
Query: 59 VAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHS 110
+AA Y+ + G+ + ++ NF +M+ F N M L +H+
Sbjct: 172 MAAMCYK--YSIGQPFVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHA 228
Query: 111 DHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNV 170
DHE N S TV GS+ ++P+ AAG+ L GP HG AN+ L L+++
Sbjct: 229 DHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEIS------- 280
Query: 171 SEEKLKEFIWNTLKSGQV--VPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLV 224
S + + EF + G+GH V + DPR T RE + L + D L ++
Sbjct: 281 SVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVA 340
Query: 225 SQVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLAS 282
++ + P IE K +PNVD +SG++L+ G+ + +TV+F ++R +G +A
Sbjct: 341 MELENIALNDPYFIE----KKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWIAH 395
Query: 283 LIWDRALGLPIERPKSLST 301
+ G+ I RP+ L T
Sbjct: 396 WSEMHSDGMKIARPRQLYT 414
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
Length = 426
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 43/319 (13%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG--VHKSKYWEYVYEDSMDLIAKLPV 58
+ + F HPM+ AL A Y+D V+ ++ E + L++K+P
Sbjct: 120 LFHAFRRDSHPMAVMCGITGAL------AAFYHDSLDVNNPRHREIA---AFRLLSKMPT 170
Query: 59 VAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHS 110
+AA Y+ + G+ + ++ NF +M+ F N M L +H+
Sbjct: 171 MAAMCYK--YSIGQPFVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHA 227
Query: 111 DHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNV 170
DHE N S TV GS+ ++P+ AAG+ L GP HG AN+ L L+++
Sbjct: 228 DHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEIS------- 279
Query: 171 SEEKLKEFIWNTLKSGQV--VPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLV 224
S + + EF + G+GH V + DPR T RE + L + D L ++
Sbjct: 280 SVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVA 339
Query: 225 SQVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLAS 282
++ + P IE K +PNVD +SG++L+ G+ + +TV+F ++R +G +A
Sbjct: 340 MELENIALNDPYFIE----KKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWIAH 394
Query: 283 LIWDRALGLPIERPKSLST 301
+ G+ I RP+ L T
Sbjct: 395 WSEMHSDGMKIARPRQLYT 413
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXE|B Chain B, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXG|A Chain A, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
pdb|1NXG|B Chain B, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
Length = 427
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 146/319 (45%), Gaps = 43/319 (13%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG--VHKSKYWEYVYEDSMDLIAKLPV 58
+ + F HPM+ AL A Y+D V+ ++ E + L++K+P
Sbjct: 121 LFHAFRRDSHPMAVMCGITGAL------AAFYHDSLDVNNPRHREIA---AFRLLSKMPT 171
Query: 59 VAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHS 110
+AA Y+ + G+ + ++ NF +M+ F N M L +H+
Sbjct: 172 MAAMCYK--YSIGQPFVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHA 228
Query: 111 DHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNV 170
DHE N S TV GS+ ++P+ AAG+ L GP HG AN+ L L+++
Sbjct: 229 DHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEIS------- 280
Query: 171 SEEKLKEFIWNTLKSGQV--VPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLV 224
S + + EF + G+GH V + DPR T RE + L + D L ++
Sbjct: 281 SVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVA 340
Query: 225 SQVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLAS 282
++ + P IE K +PNVD +SG++L+ G+ + +TV+ ++R +G +A
Sbjct: 341 MELENIALNDPYFIE----KKLYPNVDFYSGIILKAMGIPS-SMFTVIAAMARTVGWIAH 395
Query: 283 LIWDRALGLPIERPKSLST 301
+ G+ I RP+ L T
Sbjct: 396 WSEMHSDGMKIARPRQLYT 414
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 134/286 (46%), Gaps = 27/286 (9%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
++ P + HPM I+ L + +D E VY + + AK+P +
Sbjct: 79 IMEALPKNTHPMGALRTIISYLGN-------IDDSGDIPVTPEEVYRIGISVTAKIPTIV 131
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDN--HQFTELMRLYLTIHSDHEGGNVS 118
A YR + G +ANF ML + ++ + M + L ++++HE N S
Sbjct: 132 ANWYR--IKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEI-NAS 188
Query: 119 AHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEF 178
V VGS LSD Y + AG+ L GP+HG A +E + +Q + S EK++E+
Sbjct: 189 TLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAI-------KQFMEIGSPEKVEEW 241
Query: 179 IWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIET 238
+ L+ + + G GH V + DPR +++A K L D LF++ ++ ++V L +
Sbjct: 242 FFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASK-LGDKKLFEIAERLERLVEEYLSKK 300
Query: 239 GKVKNPWPNVDAHSGVLLQYYGLK-EMNYYTVLFGVSRALGVLASL 283
G NVD SG L +YG+K + YT +F + R G A L
Sbjct: 301 GIS----INVDYWSG--LVFYGMKIPIELYTTIFAMGRIAGWTAHL 340
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 38/324 (11%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+ F HP + + AL + + N+ +H+ + L++K P +A
Sbjct: 124 FFHGFRRDAHPXAVXCGVVGALAAFYHDSLDINNDLHREI-------TAYRLLSKXPTLA 176
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANF------TSMLGFD-NHQFTELMRLYLTIHSDHE 113
A Y+ + G+ + ++ NF T ++ N T+H+DHE
Sbjct: 177 AXCYK--YSTGQPFIYPRNDLSYAENFLHXXFATPCEEYEVNPVVARAXDKIFTLHADHE 234
Query: 114 GGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQ--QQVGDNVS 171
N S TV L GS+ ++P+ AAG+ L GP HG AN+ L L+++ + + V
Sbjct: 235 Q-NASTSTVRLAGSSGANPFACIAAGIASLWGPAHGGANEACLKXLEEIGSVDNIPEYVD 293
Query: 172 EEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPD----DSLFKLVSQV 227
K K+ + + G+GH V + DPR T RE + L + D L + ++
Sbjct: 294 RAKDKDDPFR-------LXGFGHRVYKNYDPRATVXRETCHEVLKELNIQDPLLDVAXEL 346
Query: 228 YKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDR 287
++ + E K +PNVD +SG++L+ G+ ++ +TV+F +SR +G +A W+
Sbjct: 347 ERIA--LSDEYFVSKKLYPNVDFYSGIILKAIGIP-VSXFTVIFAISRTIGWIAH--WNE 401
Query: 288 ALGLP---IERPKSLSTNDLVKQY 308
P I RP+ L T ++ + +
Sbjct: 402 XHSDPLNRIGRPRQLYTGEVQRDF 425
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 146/323 (45%), Gaps = 40/323 (12%)
Query: 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAA 61
+P HPMS A+ S+F D E +YE +DLIAK + A
Sbjct: 82 FKRYPVSAHPMSFLRTAV------SEFGML--DPTEGDISREALYEKGLDLIAKFATIVA 133
Query: 62 TIYRNTFQGGKGIGAIDTNKDWS--ANFTSML-GFD-NHQFTELMRLYLTIHSDHEGGNV 117
R +G I +D S ANF M G + + + LM L +H++H G N
Sbjct: 134 ANKRLK----EGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEH-GFNA 188
Query: 118 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKE 177
S T S +D Y + A + L GP HG AN+ V+ ++ Q++G + E+ +E
Sbjct: 189 STFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVM----RMIQEIG---TPERARE 241
Query: 178 FIWNTLKSGQVVPGYGHAVLRKTDPRY----TCQREFAQKHLPDDSLFKLVSQVYKVVPP 233
++ L + + G GH V + DPR R A+KH S+ Y+++
Sbjct: 242 WVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGH--------SKEYQILKI 293
Query: 234 VLIETGKVKNP---WPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG 290
V E GKV NP +PNVD +SGV+ G + ++T +F V+R G + ++ + L
Sbjct: 294 VEEEAGKVLNPRGIYPNVDFYSGVVYSDLGFS-LEFFTPIFAVARISGWVGHILEYQELD 352
Query: 291 LPIERPKSLSTNDLVKQYSKIKS 313
+ RP + +L Y +++
Sbjct: 353 NRLLRPGAKYVGELDVPYVPLEA 375
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
pdb|1VGM|B Chain B, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 378
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 22/273 (8%)
Query: 47 EDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANF-TSMLGFD-NHQFTELMRL 104
E ++ +IAK + A IYR + G + ++ ++ +F + G + + M
Sbjct: 119 ELAVQIIAKTATITANIYRA--KEGLKPKIPEPSESYAESFLAATFGKKPTQEEIKAMDA 176
Query: 105 YLTIHSDHEGGNVSAHTVHLVGSA-LSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQ 163
L +++DHE ++ T LV S+ LSD Y A + L GPLHG A +E +
Sbjct: 177 SLILYTDHEVP--ASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAF------K 228
Query: 164 QQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRY----TCQREFAQKHLPDDS 219
Q V E K F +K + G+GH V + DPR T + FA+K+
Sbjct: 229 QFVEIGSVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKK 288
Query: 220 LFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGV 279
+++ ++ K+ ++T K+ +PN D +SG++ G + +T LF +SR LG
Sbjct: 289 YYEIAERIEKLG----VDTFGSKHIYPNTDFYSGIVFYALGFP-IYMFTSLFALSRVLGW 343
Query: 280 LASLIWDRALGLPIERPKSLSTNDLVKQYSKIK 312
LA +I + RP++L +++ I+
Sbjct: 344 LAHIIEYVEEQHRLIRPRALYIGPEKREFKPIE 376
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 30/276 (10%)
Query: 47 EDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTE---LMR 103
E ++ +IAK+ + A +YR +G K I D A + F T+ M
Sbjct: 118 EKAISIIAKMATLVANVYRRK-EGNKP--RIPEPSDSFAKSFLLASFAREPTTDEINAMD 174
Query: 104 LYLTIHSDHEGGNVSAHTVH--LVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL-- 159
L +++DHE V A T + S LSD Y S A + L GPLHG A +E
Sbjct: 175 KALILYTDHE---VPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIE 231
Query: 160 ----KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL 215
++Q D V +K + + G+GH V + DPR ++ A +
Sbjct: 232 IGDPNRVQNWFNDKVVNQKNR------------LMGFGHRVYKTYDPRAKIFKKLALTLI 279
Query: 216 PDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSR 275
++ + ++ + + + I+ K +PN D +SG++ G + +T LF +SR
Sbjct: 280 ERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYALGFP-VYMFTALFALSR 338
Query: 276 ALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKI 311
LG LA +I + RP++L ++Y I
Sbjct: 339 TLGWLAHIIEYVEEQHRLIRPRALYVGPEYQEYVSI 374
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase
Length = 378
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 29/295 (9%)
Query: 9 LHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTF 68
HPM A++ L + N + E E +M L+A P V A Y
Sbjct: 91 CHPMDVARTAVSVLGA--------NHARAQDSSPEANLEKAMSLLATFPSVVA--YDQRR 140
Query: 69 QGGKGIGAIDTNKDWSANFTSMLGFDNH--QFTELMRLYLTIHSDHEGGNVSAHTVHLVG 126
+ G+ + + D+SANF M + + E + + ++++H N S T ++
Sbjct: 141 RRGEELIEPREDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEH-SFNASTFTARVIT 199
Query: 127 SALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW--NTLK 184
S L+D + + + L GPLHG AN+ V+ +++ + +++ E + W + L
Sbjct: 200 STLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALA 259
Query: 185 SGQVVPGYGHAVLRKTDPRYTCQR---EFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKV 241
+ V G+GH V + D R + + KH + L Y + + E ++
Sbjct: 260 QKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGL----YNGLEAAMEEAKQI 315
Query: 242 KNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASL---IWDRALGLPI 293
K PN+D +G G + +T LF +R G A + + D AL P+
Sbjct: 316 K---PNLDYPAGPTYNLMGF-DTEMFTPLFIAARITGWTAHIMEQVADNALIRPL 366
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 106 LTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEV--LIWLKKLQ 163
L ++++HE N S + + LSD Y + A + L GPLHG AN+ LI L K
Sbjct: 180 LILYAEHEF-NASTFAARVCSATLSDIYSAVTAAIATLRGPLHGGANEAAXDLIXLYKTP 238
Query: 164 QQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP---DDSL 220
+ + + L + +++ G+GHAV R+ DPR + +AQK P D L
Sbjct: 239 SEAIAGIKRK---------LANKELIXGFGHAVYRERDPRNAIIKSWAQKLAPNAADGYL 289
Query: 221 FKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVL 280
F + + K +PN+D +S + + +T +F SR G
Sbjct: 290 FDISDAIENT-------XQDEKKLFPNLDFYSATAYHFLNIP-TKLFTPIFVXSRVTGWC 341
Query: 281 ASLIWDR 287
A + R
Sbjct: 342 AHIFEQR 348
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 10/214 (4%)
Query: 100 ELMRLYLTIHSDHEGGNVSAHTVHLVG-SALSDPYLSFAAGMNGLAGPLHGLANQEVLIW 158
+ M L +++DHE ++ T LV S LSD Y A + L GPLHG A + +
Sbjct: 176 DAMNTALILYTDHEVP--ASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQ 233
Query: 159 LKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDD 218
++ D EK F N + + + G+GH V + DPR + A+K
Sbjct: 234 F----DEIKDPAMVEKW--FNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKK 287
Query: 219 SLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLK-EMNYYTVLFGVSRAL 277
V ++ + I+ K +PN D SG++ G N YT LF +SR
Sbjct: 288 PEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVT 347
Query: 278 GVLASLIWDRALGLPIERPKSLSTNDLVKQYSKI 311
G A I + RP+++ ++Y I
Sbjct: 348 GWQAHFIEYVEEQQRLIRPRAVYVGPAERKYVPI 381
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 10/214 (4%)
Query: 100 ELMRLYLTIHSDHEGGNVSAHTVHLVG-SALSDPYLSFAAGMNGLAGPLHGLANQEVLIW 158
+ M L +++DHE ++ T LV S LSD Y A + L GPLHG A + +
Sbjct: 175 DAMNTALILYTDHEVP--ASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQ 232
Query: 159 LKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDD 218
++ D EK F N + + + G+GH V + DPR + A+K
Sbjct: 233 F----DEIKDPAMVEKW--FNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKK 286
Query: 219 SLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLK-EMNYYTVLFGVSRAL 277
V ++ + I+ K +PN D SG++ G N YT LF +SR
Sbjct: 287 PEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVT 346
Query: 278 GVLASLIWDRALGLPIERPKSLSTNDLVKQYSKI 311
G A I + RP+++ ++Y I
Sbjct: 347 GWQAHFIEYVEEQQRLIRPRAVYVGPAERKYVPI 380
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 133/313 (42%), Gaps = 35/313 (11%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVY----EDSMDLIAKL 56
++ + PN++ MS ++AL + Y + E+++ LIA
Sbjct: 79 LIQSLPNNMDDMSVLRTVVSALGENT-----------------YTFHPKTEEAIRLIAIT 121
Query: 57 PVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEG 114
P + A YR + G+ A + N+ ML + + + + Y+ + ++H G
Sbjct: 122 PSIIA--YRKRWTRGEQAIAPSSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEH-G 178
Query: 115 GNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEK 174
N S + + S SD + A + + GPLHG A V K+ + +G+ E
Sbjct: 179 MNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAV----TKMLEDIGEK---EH 231
Query: 175 LKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPV 234
+ ++ L+ G+ + G+GH V + DPR R+ A++ +D L V +
Sbjct: 232 AEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGNDRDLDLALHVEAEAIRL 291
Query: 235 LIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIE 294
L + + NV+ ++ +++ + +T F SR +G A ++ ++A I
Sbjct: 292 LEIYKPGRKLYTNVEFYAAAVMRAIDFDD-ELFTPTFSASRMVGWCAHVL-EQAENNMIF 349
Query: 295 RPKSLSTNDLVKQ 307
RP + T + ++
Sbjct: 350 RPSAQYTGAIPEE 362
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 102 MRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKK 161
M + L ++++HE N S T ++ SD Y + + L GP HG AN+ + L+
Sbjct: 205 MHISLVLYAEHEF-NASTFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGANE---VSLEI 260
Query: 162 LQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLF 221
Q+ + +E +++ + N +VV G+GH V DPR+ + A++ +
Sbjct: 261 QQRYETPDEAEADIRKRVENK----EVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSL 316
Query: 222 KLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 281
K+ + + V+ ET K+ +PN+D S V G+ +T LF ++R G A
Sbjct: 317 KMY-HIADRLETVMWETKKM---FPNLDWFSAVSYNMMGVP-TEMFTPLFVIARVTGWAA 371
Query: 282 SLIWDR 287
+I R
Sbjct: 372 HIIEQR 377
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 130/304 (42%), Gaps = 36/304 (11%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+L P++ HPM AI+ L +E + +++K +M ++A LP +
Sbjct: 127 LLAKLPDNCHPMDVVRTAISYLGAEDP--DEDDAAANRAK--------AMRMMAVLPTIV 176
Query: 61 ATIYRNTFQGGKGIGAIDTNKD--WSANFTSMLGFDNHQFTELMRLY---LTIHSDHEGG 115
A R +G+ I + ++ NF M F T ++ + + ++++H G
Sbjct: 177 AIDMRRR----RGLPPIAPHSGLGYAQNFLHMC-FGEVPETAVVSAFEQSMILYAEH-GF 230
Query: 116 NVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 175
N S +V S SD Y + + L G LHG AN+ V+ + ++GD +
Sbjct: 231 NASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMI----EIGDPANA--- 283
Query: 176 KEFIWNTLKSGQVVPGYGHAVLRKTDPRY-TCQREFAQKHLPDDSLFKLVSQVYKVVPPV 234
+E++ L + + G+GH V R D R T +R + D L +Y+V +
Sbjct: 284 REWLRAKLARKEKIMGFGHRVYRHGDSRVPTMKRALERVGTVRDGQRWL--DIYQV---L 338
Query: 235 LIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIE 294
E PN+D +G G ++ +T +F +SR G A I ++A +
Sbjct: 339 AAEMASATGILPNLDFPTGPAYYLMGF-DIASFTPIFVMSRITGWTAH-IMEQATANALI 396
Query: 295 RPKS 298
RP S
Sbjct: 397 RPLS 400
>pdb|3NUZ|A Chain A, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|B Chain B, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|C Chain C, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|D Chain D, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|E Chain E, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|F Chain F, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 398
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 178 FIWNTLKSGQVVPGYG--HAVLRKTDPRYTCQREFAQKHL 215
I + + G+ + YG HA LR T+PRY R+F+ K
Sbjct: 14 LIKSVREDGRFLSSYGVVHAXLRNTEPRYAFHRDFSPKEF 53
>pdb|1SOK|A Chain A, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group P21212
pdb|1SOK|B Chain B, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group P21212
pdb|1SOQ|A Chain A, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|B Chain B, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|C Chain C, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
pdb|1SOQ|D Chain D, Crystal Structure Of The Transthyretin Mutant A108yL110E
SOLVED IN Space Group C2
Length = 127
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1TTB|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTB|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1ETB|1 Chain 1, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
pdb|1ETB|2 Chain 2, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
Length = 127
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|3I9A|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t - #1
pdb|3I9A|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t - #1
pdb|3OZK|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Thyroxine (T4)
pdb|3OZK|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Thyroxine (T4)
pdb|3OZL|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Flufenamic Acid.
pdb|3OZL|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t In
Complex With Flufenamic Acid
Length = 127
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1BZD|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1BZD|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2TRH|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|2TRH|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1QWH|A Chain A, A Covalent Dimer Of Transthyretin That Affects The Amyloid
Pathway
pdb|1QWH|B Chain B, A Covalent Dimer Of Transthyretin That Affects The Amyloid
Pathway
Length = 117
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 20 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 55
>pdb|3U2I|A Chain A, X-Ray Crystal Structure Of Human Transthyretin At Room
Temperature
pdb|3U2I|B Chain B, X-Ray Crystal Structure Of Human Transthyretin At Room
Temperature
pdb|3U2J|A Chain A, Neutron Crystal Structure Of Human Transthyretin
pdb|3U2J|B Chain B, Neutron Crystal Structure Of Human Transthyretin
Length = 117
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 20 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 55
>pdb|1BZ8|A Chain A, Transthyretin (Del Val122)
pdb|1BZ8|B Chain B, Transthyretin (Del Val122)
Length = 126
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|3BT0|A Chain A, Crystal Structure Of Transthyretin Variant V20s
pdb|3BT0|B Chain B, Crystal Structure Of Transthyretin Variant V20s
Length = 127
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1X7S|A Chain A, The X-Ray Crystallographic Structure Of The Amyloidogenic
Variant Ttr Tyr78phe
pdb|1X7S|B Chain B, The X-Ray Crystallographic Structure Of The Amyloidogenic
Variant Ttr Tyr78phe
pdb|2B16|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Tyr78phe
pdb|2B16|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
The Amyloidogenic Variant Transthyretin Tyr78phe
Length = 127
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2G3X|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2G3X|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Acidic
Ph
pdb|2NOY|A Chain A, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
pdb|2NOY|B Chain B, Crystal Structure Of Transthyretin Mutant I84s At Ph 7.5
Length = 127
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2TRY|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|2TRY|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
Length = 127
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2H4E|A Chain A, Crystal Structure Of Cys10 Sulfonated Transthyretin
pdb|2H4E|B Chain B, Crystal Structure Of Cys10 Sulfonated Transthyretin
pdb|3HJ0|A Chain A, Transthyretin In Complex With A Covalent Small Molecule
Kinetic Stabilizer
pdb|3HJ0|B Chain B, Transthyretin In Complex With A Covalent Small Molecule
Kinetic Stabilizer
Length = 127
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1III|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-data Collected At Room Temperature
pdb|1III|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-data Collected At Room Temperature
pdb|1IIK|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-Data Collected At Cryo Temperature
pdb|1IIK|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
Y114c-Data Collected At Cryo Temperature
Length = 127
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1TTA|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTA|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TYR|A Chain A, Transthyretin Complex With Retinoic Acid
pdb|1TYR|B Chain B, Transthyretin Complex With Retinoic Acid
pdb|2ROY|A Chain A, Transthyretin (Also Called Prealbumin) Complex With
3',5'-Dinitro-N- Acetyl-L-Thyronine
pdb|2ROY|B Chain B, Transthyretin (Also Called Prealbumin) Complex With
3',5'-Dinitro-N- Acetyl-L-Thyronine
pdb|2ROX|A Chain A, Transthyretin (Also Called Prealbumin) Complex With
Thyroxine (T4)
pdb|2ROX|B Chain B, Transthyretin (Also Called Prealbumin) Complex With
Thyroxine (T4)
pdb|1BM7|A Chain A, Human Transthyretin (Prealbumin) Complex With Flufenamic
Acid (2-[[3-(Trifluoromethyl)phenyl]amino] Benzoic Acid)
pdb|1BM7|B Chain B, Human Transthyretin (Prealbumin) Complex With Flufenamic
Acid (2-[[3-(Trifluoromethyl)phenyl]amino] Benzoic Acid)
pdb|1BMZ|A Chain A, Human Transthyretin (Prealbumin)
pdb|1BMZ|B Chain B, Human Transthyretin (Prealbumin)
pdb|1E3F|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E3F|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E4H|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E4H|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E5A|A Chain A, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1E5A|B Chain B, Structure Of Human Transthyretin Complexed With
Bromophenols: A New Mode Of Binding
pdb|1F41|A Chain A, Crystal Structure Of Human Transthyretin At 1.5a
Resolution
pdb|1F41|B Chain B, Crystal Structure Of Human Transthyretin At 1.5a
Resolution
pdb|1ICT|A Chain A, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|B Chain B, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|C Chain C, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|D Chain D, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|E Chain E, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|F Chain F, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|G Chain G, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1ICT|H Chain H, Monoclinic Form Of Human Transthyretin Complexed With
Thyroxine (T4)
pdb|1TT6|A Chain A, The Orthorhombic Crystal Structure Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TT6|B Chain B, The Orthorhombic Crystal Structure Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|A Chain A, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|B Chain B, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|C Chain C, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1TZ8|D Chain D, The Monoclinic Crystal Struture Of Transthyretin In
Complex With Diethylstilbestrol
pdb|1U21|A Chain A, Transthyretin With Tethered Inhibitor On One Monomer.
pdb|1U21|B Chain B, Transthyretin With Tethered Inhibitor On One Monomer.
pdb|1Z7J|A Chain A, Human Transthyretin (Also Called Prealbumin) Complex With
3, 3',5,5'- Tetraiodothyroacetic Acid (T4ac)
pdb|1Z7J|B Chain B, Human Transthyretin (Also Called Prealbumin) Complex With
3, 3',5,5'- Tetraiodothyroacetic Acid (T4ac)
pdb|1Y1D|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal
pdb|1Y1D|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal
pdb|2B77|A Chain A, Human Transthyretin (ttr) Complexed With Diflunisal
Analogues- Ttr.2',
4'-dichloro-4-hydroxy-1,1'-biphenyl-3-carboxylic Acid
pdb|2B77|B Chain B, Human Transthyretin (ttr) Complexed With Diflunisal
Analogues- Ttr.2',
4'-dichloro-4-hydroxy-1,1'-biphenyl-3-carboxylic Acid
pdb|2B9A|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr.3',5'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2B9A|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr.3',5'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F7I|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr. 2',6'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F7I|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
Analogues- Ttr. 2',6'-Difluorobiphenyl-4-Carboxylic Acid
pdb|2F8I|A Chain A, Human Transthyretin (Ttr) Complexed With Benzoxazole
pdb|2F8I|B Chain B, Human Transthyretin (Ttr) Complexed With Benzoxazole
pdb|2FBR|A Chain A, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (4 Carbon Linker)
pdb|2FBR|B Chain B, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (4 Carbon Linker)
pdb|2FLM|A Chain A, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (6 Carbon Linker)
pdb|2FLM|B Chain B, Human Transthyretin (Ttr) Complexed With Bivalant Amyloid
Inhibitor (6 Carbon Linker)
pdb|2G5U|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4,4'-Dihydroxy-3,3',5,5'-Tetrachlorobiphenyl
pdb|2G5U|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4,4'-Dihydroxy-3,3',5,5'-Tetrachlorobiphenyl
pdb|2G9K|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-2',3,3',4',5-Pentachlorobiphenyl
pdb|2G9K|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-2',3,3',4',5-Pentachlorobiphenyl
pdb|2GAB|A Chain A, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-3,3',5,4'-Tetrachlorobiphenyl
pdb|2GAB|B Chain B, Human Transthyretin (Ttr) Complexed With Hydroxylated
Polychlorinated
Biphenyl-4-Hydroxy-3,3',5,4'-Tetrachlorobiphenyl
pdb|2B15|A Chain A, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
Human Transthyretin
pdb|2B15|B Chain B, The Crystal Structure Of 2,4-Dinitrophenol In Complex With
Human Transthyretin
pdb|2G4G|A Chain A, Crystal Structure Of Human Transthyretin At Ph 4.6
pdb|2G4G|B Chain B, Crystal Structure Of Human Transthyretin At Ph 4.6
pdb|3B56|A Chain A, Crystal Structure Of Transthyretin In Complex With 3,5-
Diiodosalicylic Acid
pdb|3B56|B Chain B, Crystal Structure Of Transthyretin In Complex With 3,5-
Diiodosalicylic Acid
pdb|2QGB|A Chain A, Human Transthyretin (Ttr) In Apo-Form
pdb|2QGB|B Chain B, Human Transthyretin (Ttr) In Apo-Form
pdb|2QGC|A Chain A, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethyl-4- Hydroxyphenyl)benzoxazole
pdb|2QGC|B Chain B, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethyl-4- Hydroxyphenyl)benzoxazole
pdb|2QGD|A Chain A, Human Transthyretin (Ttr) Complexed With 2-(3,5-Dibromo-4-
Hydroxyphenyl)benzoxazole
pdb|2QGD|B Chain B, Human Transthyretin (Ttr) Complexed With 2-(3,5-Dibromo-4-
Hydroxyphenyl)benzoxazole
pdb|2QGE|A Chain A, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethylphenyl) Benzoxazole
pdb|2QGE|B Chain B, Human Transthyretin (Ttr) Complexed With
2-(3,5-Dimethylphenyl) Benzoxazole
pdb|3D2T|A Chain A, Human Transthyretin (Ttr) Complexed With Diflunisal
pdb|3D2T|B Chain B, Human Transthyretin (Ttr) Complexed With Diflunisal
pdb|3CBR|A Chain A, Crystal Structure Of Human Transthyretin (Ttr) At Ph3.5
pdb|3CBR|B Chain B, Crystal Structure Of Human Transthyretin (Ttr) At Ph3.5
pdb|3D7P|A Chain A, Crystal Structure Of Human Transthyretin (Ttr) At Ph 4.0
pdb|3D7P|B Chain B, Crystal Structure Of Human Transthyretin (Ttr) At Ph 4.0
pdb|3CN0|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dimethyl-4-
Hydroxystilbene
pdb|3CN0|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dimethyl-4-
Hydroxystilbene
pdb|3CN1|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxystilbene
pdb|3CN1|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxystilbene
pdb|3CN2|A Chain A, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxybiphenyl
pdb|3CN2|B Chain B, Human Transthyretin (Ttr) In Complex With 3,5-Dibromo-4-
Hydroxybiphenyl
pdb|3CN3|A Chain A, Human Transthyretin (Ttr) In Complex With 1,3-Dibromo-2-
Hydroxy-5-Phenoxybenzene
pdb|3CN3|B Chain B, Human Transthyretin (Ttr) In Complex With 1,3-Dibromo-2-
Hydroxy-5-Phenoxybenzene
pdb|3CN4|A Chain A, Human Transthyretin (Ttr) In Complex With
N-(3,5-Dibromo-4- Hydroxyphenyl)benzamide
pdb|3CN4|B Chain B, Human Transthyretin (Ttr) In Complex With
N-(3,5-Dibromo-4- Hydroxyphenyl)benzamide
pdb|3BSZ|A Chain A, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|B Chain B, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|C Chain C, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|D Chain D, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3GLZ|A Chain A, Human Transthyretin (Ttr) Complexed With(E)-3-(2-
(Trifluoromethyl)benzylideneaminooxy)propanoic Acid
(Inhibitor 11)
pdb|3GLZ|B Chain B, Human Transthyretin (Ttr) Complexed With(E)-3-(2-
(Trifluoromethyl)benzylideneaminooxy)propanoic Acid
(Inhibitor 11)
pdb|3GS0|A Chain A, Human Transthyretin (Ttr) Complexed With
(S)-3-(9h-Fluoren- 9-Ylideneaminooxy)-2-Methylpropanoic
Acid (Inhibitor 16)
pdb|3GS0|B Chain B, Human Transthyretin (Ttr) Complexed With
(S)-3-(9h-Fluoren- 9-Ylideneaminooxy)-2-Methylpropanoic
Acid (Inhibitor 16)
pdb|3GS4|A Chain A, Human Transthyretin (Ttr) Complexed With 3-(9h-Fluoren-9-
Ylideneaminooxy)propanoic Acid (Inhibitor 15)
pdb|3GS4|B Chain B, Human Transthyretin (Ttr) Complexed With 3-(9h-Fluoren-9-
Ylideneaminooxy)propanoic Acid (Inhibitor 15)
pdb|3GS7|A Chain A, Human Transthyretin (Ttr) Complexed With (E)-3-(2-
Methoxybenzylideneaminooxy)propanoic Acid (Inhibitor 13)
pdb|3GS7|B Chain B, Human Transthyretin (Ttr) Complexed With (E)-3-(2-
Methoxybenzylideneaminooxy)propanoic Acid (Inhibitor 13)
pdb|3ESN|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,6-Dimethylbenzamide
pdb|3ESN|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,6-Dimethylbenzamide
pdb|3ESO|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,5-Dichlorobenzamide
pdb|3ESO|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-2,5-Dichlorobenzamide
pdb|3ESP|A Chain A, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide
pdb|3ESP|B Chain B, Human Transthyretin (Ttr) Complexed With N-(3,5-Dibromo-4-
Hydroxyphenyl)-3,5-Dimethyl-4-Hydroxybenzamide
pdb|3A4D|A Chain A, Crystal Structure Of Human Transthyretin (Wild-Type)
pdb|3A4D|B Chain B, Crystal Structure Of Human Transthyretin (Wild-Type)
pdb|3IMR|A Chain A, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dichlorostyryl)phenol
pdb|3IMR|B Chain B, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dichlorostyryl)phenol
pdb|3IMS|A Chain A, Transthyretin In Complex With 2,6-Dibromo-4-(2,6-
Dichlorophenethyl)phenol
pdb|3IMS|B Chain B, Transthyretin In Complex With 2,6-Dibromo-4-(2,6-
Dichlorophenethyl)phenol
pdb|3IMT|A Chain A, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromophenol
pdb|3IMT|B Chain B, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromophenol
pdb|3IMU|A Chain A, Transthyretin In Complex With (E)-4-(3-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMU|B Chain B, Transthyretin In Complex With (E)-4-(3-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMV|A Chain A, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMV|B Chain B, Transthyretin In Complex With (E)-4-(4-Aminostyryl)-2,6-
Dibromoaniline
pdb|3IMW|A Chain A, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dimethoxystyryl)aniline
pdb|3IMW|B Chain B, Transthyretin In Complex With (E)-2,6-Dibromo-4-(2,6-
Dimethoxystyryl)aniline
pdb|3KGU|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With
Genistein (Ttrwt:gen) Ph 7.5
pdb|3KGU|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With
Genistein (Ttrwt:gen) Ph 7.5
pdb|3IPB|A Chain A, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (11 Carbon Linker).
pdb|3IPB|B Chain B, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (11 Carbon Linker).
pdb|3IPE|A Chain A, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (7 Carbon Linker).
pdb|3IPE|B Chain B, Human Transthyretin (Ttr) Complexed With A Palindromic
Bivalent Amyloid Inhibitor (7 Carbon Linker).
pdb|3M1O|A Chain A, Human Transthyretin (Ttr) Complexed With
2-((3,5-Dichloro-4- Hydroxyphenyl)amino)benzoic Acid
pdb|3M1O|B Chain B, Human Transthyretin (Ttr) Complexed With
2-((3,5-Dichloro-4- Hydroxyphenyl)amino)benzoic Acid
pdb|3P3R|A Chain A, Transthyretin In Complex With
(3,4-Dihydroxy-5-Nitrophenyl)(2- Fluorophenyl)methanone
pdb|3P3R|B Chain B, Transthyretin In Complex With
(3,4-Dihydroxy-5-Nitrophenyl)(2- Fluorophenyl)methanone
pdb|3P3S|A Chain A, Human Transthyretin (Ttr) Complexed With
(Z)-5-(3,5-Dibromo-4-
Hydroxybenzylidene)-Imino-1-Methylimidazolidin-4-One
pdb|3P3S|B Chain B, Human Transthyretin (Ttr) Complexed With
(Z)-5-(3,5-Dibromo-4-
Hydroxybenzylidene)-Imino-1-Methylimidazolidin-4-One
pdb|3P3T|A Chain A, Human Transthyretin (Ttr) Complexed With
4-(3-(2-Flourophenoxy) Propyl)-3,5-Dimethyl-1h-Pyrazole
pdb|3P3T|B Chain B, Human Transthyretin (Ttr) Complexed With
4-(3-(2-Flourophenoxy) Propyl)-3,5-Dimethyl-1h-Pyrazole
pdb|3P3U|A Chain A, Human Transthyretin (Ttr) Complexed With
5-(2-Ethoxyphenyl)-3- (Pyridin-4-Yl)-1,2,4-Oxadiazole
pdb|3P3U|B Chain B, Human Transthyretin (Ttr) Complexed With
5-(2-Ethoxyphenyl)-3- (Pyridin-4-Yl)-1,2,4-Oxadiazole
pdb|3TCT|A Chain A, Structure Of Wild-Type Ttr In Complex With Tafamidis
pdb|3TCT|B Chain B, Structure Of Wild-Type Ttr In Complex With Tafamidis
pdb|4ACT|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-17
pdb|4ACT|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-17
pdb|4AC4|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-18
pdb|4AC4|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-18
pdb|3W3B|A Chain A, Crystal Structure Of Wild-type Human Transthyretin
pdb|3W3B|B Chain B, Crystal Structure Of Wild-type Human Transthyretin
pdb|4IIZ|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Lumiracoxib
pdb|4IIZ|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Lumiracoxib
pdb|4IK6|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Lumiracoxib
pdb|4IK6|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Lumiracoxib
pdb|4IK7|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Indomethacin
pdb|4IK7|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Indomethacin
pdb|4IKI|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Indomethacin
pdb|4IKI|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Indomethacin
pdb|4IKJ|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKJ|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKK|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKK|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKL|A Chain A, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4IKL|B Chain B, Crystal Structure Of Wild-type Human Transthyretin In
Complex With Sulindac
pdb|4FI6|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-
Benzenesulfonamide
pdb|4FI6|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichlorophenyl)-1,3,4-oxadiazol-2-yl)-
Benzenesulfonamide
pdb|4FI7|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,
4-oxadiazol-2-yl)- Benzenesulfonamide
pdb|4FI7|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,
4-oxadiazol-2-yl)- Benzenesulfonamide
pdb|4FI8|A Chain A, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
4-bromo-3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-
Oxadiazol-2-yl)-benzenesulfonamide
pdb|4FI8|B Chain B, Kinetic Stabilization Of Transthyretin Through Covalent
Modification Of K15 By
4-bromo-3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-
Oxadiazol-2-yl)-benzenesulfonamide
Length = 127
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1TTR|A Chain A, Transthyretin-V122I CARDIOMYOPATHIC MUTANT
pdb|1TTR|B Chain B, Transthyretin-V122I CARDIOMYOPATHIC MUTANT
Length = 127
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1GKO|A Chain A, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|B Chain B, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|C Chain C, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|1GKO|D Chain D, An Engineered Transthyretin Monomer That Is
Non-Amyloidogenic - Unless Partially Denatured
pdb|3DGD|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DGD|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6
pdb|3DID|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3DID|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 4.6 Soaked
pdb|3GPS|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GPS|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 5.5
pdb|3GRB|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRB|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 6.5
pdb|3GRG|A Chain A, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|B Chain B, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|D Chain D, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
pdb|3GRG|C Chain C, Crystal Structure Of The F87mL110M MUTANT OF HUMAN
TRANSTHYRETIN AT Ph 7.5
Length = 127
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|3CXF|A Chain A, Crystal Structure Of Transthyretin Variant Y114h
pdb|3CXF|B Chain B, Crystal Structure Of Transthyretin Variant Y114h
pdb|3DK2|A Chain A, Crystal Structure Of Transthyretin Variant Y114h At Acidic
Ph
pdb|3DK2|B Chain B, Crystal Structure Of Transthyretin Variant Y114h At Acidic
Ph
Length = 127
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2PAB|A Chain A, Structure Of Prealbumin, Secondary, Tertiary And
Quaternary Interactions Determined By Fourier Refinement
At 1.8 Angstroms
pdb|2PAB|B Chain B, Structure Of Prealbumin, Secondary, Tertiary And
Quaternary Interactions Determined By Fourier Refinement
At 1.8 Angstroms
pdb|1THC|A Chain A, Crystal Structure Determination At 2.3a Of Human
Transthyretin-3',5'-
Dibromo-2',4,4',6-Tetra-Hydroxyaurone Complex
pdb|1THC|B Chain B, Crystal Structure Determination At 2.3a Of Human
Transthyretin-3',5'-
Dibromo-2',4,4',6-Tetra-Hydroxyaurone Complex
pdb|1THA|A Chain A, Mechanism Of Molecular Recognition. Structural Aspects Of
3, 3'-Diiodo-L-Thyronine Binding To Human Serum
Transthyretin
pdb|1THA|B Chain B, Mechanism Of Molecular Recognition. Structural Aspects Of
3, 3'-Diiodo-L-Thyronine Binding To Human Serum
Transthyretin
pdb|1TLM|A Chain A, Structural Aspects Of Inotropic Bipyridine Binding:
Crystal Structure Determination To 1.9 Angstroms Of The
Human Serum Transthyretin-Milrinone Complex
pdb|1TLM|B Chain B, Structural Aspects Of Inotropic Bipyridine Binding:
Crystal Structure Determination To 1.9 Angstroms Of The
Human Serum Transthyretin-Milrinone Complex
pdb|1RLB|A Chain A, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|B Chain B, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|C Chain C, Retinol Binding Protein Complexed With Transthyretin
pdb|1RLB|D Chain D, Retinol Binding Protein Complexed With Transthyretin
pdb|1QAB|A Chain A, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|B Chain B, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|C Chain C, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
pdb|1QAB|D Chain D, The Structure Of Human Retinol Binding Protein With Its
Carrier Protein Transthyretin Reveals Interaction With
The Carboxy Terminus Of Rbp
Length = 127
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFV 65
>pdb|3A4F|A Chain A, Crystal Structure Of Human Transthyretin (E54k)
pdb|3A4F|B Chain B, Crystal Structure Of Human Transthyretin (E54k)
Length = 127
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGKLHGLTTEEEFV 65
>pdb|2G3Z|A Chain A, Crystal Structure Of Transthyretin Mutant I84a At Low Ph
pdb|2G3Z|B Chain B, Crystal Structure Of Transthyretin Mutant I84a At Low Ph
pdb|2G4E|A Chain A, Crystal Structure Of Transthyretin Mutant I84a At Neutral
Ph
pdb|2G4E|B Chain B, Crystal Structure Of Transthyretin Mutant I84a At Neutral
Ph
Length = 127
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1ZCR|A Chain A, Crystal Structure Of Human Transthyretin With Bound Iodide
pdb|1ZCR|B Chain B, Crystal Structure Of Human Transthyretin With Bound Iodide
pdb|1ZD6|A Chain A, Crystal Structure Of Human Transthyretin With Bound
Chloride
pdb|1ZD6|B Chain B, Crystal Structure Of Human Transthyretin With Bound
Chloride
Length = 128
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 31 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 66
>pdb|1IJN|A Chain A, Crystal Structure Of The Transthyretin Mutant Ttr
C10aY114C
pdb|1IJN|B Chain B, Crystal Structure Of The Transthyretin Mutant Ttr
C10aY114C
Length = 127
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|4ANK|A Chain A, Crystallographic Study Of Novel Transthyretin Ligands
Exhibiting Negative-Cooperativity Between Two T4 Binding
Sites.
pdb|4ANK|B Chain B, Crystallographic Study Of Novel Transthyretin Ligands
Exhibiting Negative-Cooperativity Between Two T4 Binding
Sites.
pdb|4DEW|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Luteolin
(Ttrwt:lut)
pdb|4DEW|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Luteolin
(Ttrwt:lut)
Length = 147
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 50 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 85
>pdb|1ETA|1 Chain 1, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
pdb|1ETA|2 Chain 2, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val 30-->met Variant
To 1.7 Angstroms Resolution
Length = 128
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 31 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 66
>pdb|1X7T|A Chain A, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With
Protective Clinical Effects
pdb|1X7T|B Chain B, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With
Protective Clinical Effects
Length = 127
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|2WQA|A Chain A, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|B Chain B, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|C Chain C, Complex Of Ttr And Rbp4 And Oleic Acid
pdb|2WQA|D Chain D, Complex Of Ttr And Rbp4 And Oleic Acid
Length = 129
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 32 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 67
>pdb|1BZE|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1BZE|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1FHN|A Chain A, Transthyretin Stability As A Key Factor In Amyloidogenesis
pdb|1FHN|B Chain B, Transthyretin Stability As A Key Factor In Amyloidogenesis
Length = 127
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|3FC8|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaome
pdb|3FC8|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaome
pdb|3FCB|A Chain A, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaoh
pdb|3FCB|B Chain B, Crystal Structure Of Transthyretin In Complex With
Iododiflunisal-Betaalaoh
pdb|4ABQ|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-1
pdb|4ABQ|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-1
pdb|4ABU|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-2
pdb|4ABU|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-2
pdb|4ABV|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-3
pdb|4ABV|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-3
pdb|4ABW|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-6
pdb|4ABW|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-6
pdb|4AC2|A Chain A, Crystal Structure Of Transthyretin In Complex With Ligand
C-7
pdb|4AC2|B Chain B, Crystal Structure Of Transthyretin In Complex With Ligand
C-7
Length = 124
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|1DVX|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Diclofenac
pdb|1DVX|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Diclofenac
pdb|1DVY|A Chain A, Crystal Structure Of Transthyretin In Complex With N-(M-
Trifluoromethylphenyl) Phenoxazine-4,6-Dicarboxylic Acid
pdb|1DVY|B Chain B, Crystal Structure Of Transthyretin In Complex With N-(M-
Trifluoromethylphenyl) Phenoxazine-4,6-Dicarboxylic Acid
pdb|1DVZ|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
O- Trifluoromethylphenyl Anthranilic Acid
pdb|1DVZ|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
O- Trifluoromethylphenyl Anthranilic Acid
pdb|1DVQ|A Chain A, Crystal Structure Of Human Transthyretin
pdb|1DVQ|B Chain B, Crystal Structure Of Human Transthyretin
pdb|1DVS|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Resveratrol
pdb|1DVS|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Resveratrol
pdb|1DVT|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Flurbiprofen
pdb|1DVT|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Flurbiprofen
pdb|1DVU|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
Dibenzofuran- 4,6-Dicarboxylic Acid
pdb|1DVU|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
Dibenzofuran- 4,6-Dicarboxylic Acid
Length = 124
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFV 65
>pdb|1FH2|A Chain A, Transthyretin Stability As A Key Factor In Amyloidogenesis
pdb|1FH2|B Chain B, Transthyretin Stability As A Key Factor In Amyloidogenesis
Length = 116
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 117 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
++ VH+ A D + FA+G +G LHGL +E +
Sbjct: 17 INVAMVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 57
>pdb|3A4E|A Chain A, Crystal Structure Of Human Transthyretin (E54g)
pdb|3A4E|B Chain B, Crystal Structure Of Human Transthyretin (E54g)
Length = 127
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGGLHGLTTEEEFV 65
>pdb|1TSH|A Chain A, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|1TSH|B Chain B, Tertiary Structures Of Three Amyloidogenic Transthyretin
Variants And Implications For Amyloid Fibril Formation
pdb|3DO4|A Chain A, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|B Chain B, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|C Chain C, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|D Chain D, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|E Chain E, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|F Chain F, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|G Chain G, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
pdb|3DO4|H Chain H, Crystal Structure Of Transthyretin Variant T60a At Acidic
Ph
Length = 127
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 30 VHVFRKAADDTWEPFASGKTSESGELHGLTAEEEFV 65
>pdb|1F86|A Chain A, Transthyretin Thr119met Protein Stabilisation
pdb|1F86|B Chain B, Transthyretin Thr119met Protein Stabilisation
Length = 115
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 21 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 56
>pdb|4DEU|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Naringenin
(Ttrwt:nar)
pdb|4DEU|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Naringenin
(Ttrwt:nar)
Length = 117
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 22 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 57
>pdb|3I9P|A Chain A, Crystal Structure Of Human Transthyretin - Wild Type
pdb|3I9P|B Chain B, Crystal Structure Of Human Transthyretin - Wild Type
pdb|3NEE|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With Gc-1
(Ttrwt:gc-1)
pdb|3NEE|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With Gc-1
(Ttrwt:gc-1)
pdb|3NEO|A Chain A, Wild Type Human Transthyretin (Ttr) Complexed With Gc-24
(Ttrwt:gc-24)
pdb|3NEO|B Chain B, Wild Type Human Transthyretin (Ttr) Complexed With Gc-24
(Ttrwt:gc-24)
pdb|4DER|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Apigenin
(Ttrwt:api)
pdb|4DER|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Apigenin
(Ttrwt:api)
pdb|4DES|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Chrysin
(Ttrwt:chr)
pdb|4DES|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Chrysin
(Ttrwt:chr)
pdb|4DET|A Chain A, Crystal Structure Of The Wild Type Ttr Binding Kaempferol
(Ttrwt:kae)
pdb|4DET|B Chain B, Crystal Structure Of The Wild Type Ttr Binding Kaempferol
(Ttrwt:kae)
Length = 116
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 21 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 56
>pdb|3CFM|A Chain A, Crystal Structure Of The Apo Form Of Human Wild-Type
Transthyretin
pdb|3CFM|B Chain B, Crystal Structure Of The Apo Form Of Human Wild-Type
Transthyretin
pdb|3CFN|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
1-Anilino-8- Naphthalene Sulfonate
pdb|3CFN|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
1-Anilino-8- Naphthalene Sulfonate
pdb|3CFQ|A Chain A, Crystal Structure Of Human Wild-Type Transthyretin In
Complex With Diclofenac
pdb|3CFQ|B Chain B, Crystal Structure Of Human Wild-Type Transthyretin In
Complex With Diclofenac
pdb|3CFT|A Chain A, Crystal Structure Of Human Transthyretin In Complex With
1- Amino-5-Naphthalene Sulfonate
pdb|3CFT|B Chain B, Crystal Structure Of Human Transthyretin In Complex With
1- Amino-5-Naphthalene Sulfonate
Length = 118
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 21 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 56
>pdb|3I9I|A Chain A, Crystal Structure Of Human Transthyretin Variant A25t - #2
pdb|3I9I|B Chain B, Crystal Structure Of Human Transthyretin Variant A25t - #2
pdb|3TFB|A Chain A, Transthyretin Natural Mutant A25t
pdb|3TFB|B Chain B, Transthyretin Natural Mutant A25t
Length = 116
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
VH+ A D + FA+G +G LHGL +E +
Sbjct: 21 VHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 56
>pdb|1TTC|A Chain A, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|1TTC|B Chain B, The X-Ray Crystal Structure Refinements Of Normal Human
Transthyretin And The Amyloidogenic Val30met Variant To
1.7 Angstroms Resolution
pdb|3DJT|A Chain A, Crystal Structure Of Transthyretin Variant V30m At Acidic
Ph
pdb|3DJT|B Chain B, Crystal Structure Of Transthyretin Variant V30m At Acidic
Ph
pdb|3KGS|A Chain A, V30m Mutant Human Transthyretin (Ttr) (Apov30m) Ph 7.5
pdb|3KGS|B Chain B, V30m Mutant Human Transthyretin (Ttr) (Apov30m) Ph 7.5
pdb|3KGT|A Chain A, V30m Mutant Human Transthyretin (Ttr) Complexed With
Geniste (V30m:gen) Ph 7.5
pdb|3KGT|B Chain B, V30m Mutant Human Transthyretin (Ttr) Complexed With
Geniste (V30m:gen) Ph 7.5
pdb|3NG5|A Chain A, Crystal Structure Of V30m Transthyretin Complexed With
(-)- Epigallocatechin Gallate (Egcg)
pdb|3NG5|B Chain B, Crystal Structure Of V30m Transthyretin Complexed With
(-)- Epigallocatechin Gallate (Egcg)
Length = 127
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 122 VHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157
+H+ A D + FA+G +G LHGL +E +
Sbjct: 30 MHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFV 65
>pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
Length = 702
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 107 TIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAG---MNGLAGPLHGLANQEVLIWLKKLQ 163
T+H+ GG S TV + S YL +A +NGL G H L + L WL++
Sbjct: 553 TVHAGL-GGARSTTTVDM-----SRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREAN 606
Query: 164 QQ 165
+Q
Sbjct: 607 EQ 608
>pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
Length = 703
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 107 TIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAG---MNGLAGPLHGLANQEVLIWLKKLQ 163
T+H+ GG S TV + S YL +A +NGL G H L + L WL++
Sbjct: 554 TVHAGL-GGARSTTTVDM-----SRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREAN 607
Query: 164 QQ 165
+Q
Sbjct: 608 EQ 609
>pdb|3R12|A Chain A, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.75 A Resolution
pdb|3R12|B Chain B, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.75 A Resolution
pdb|3R13|A Chain A, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.83 A Resolution
pdb|3R13|B Chain B, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.83 A Resolution
Length = 260
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 33 NDGVHKSKYWEYVYEDSMDLIAK-----LPVVAATIYRNT 67
N G K+K WEYVYED ++ + V+ T Y +T
Sbjct: 133 NVGXLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDT 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,542,966
Number of Sequences: 62578
Number of extensions: 496008
Number of successful extensions: 1503
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 73
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)