Query psy14237
Match_columns 360
No_of_seqs 215 out of 1375
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:54:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06105 ScCit1-2_like Saccharo 100.0 1.2E-87 2.7E-92 677.3 32.0 305 1-306 122-426 (427)
2 TIGR01793 cit_synth_euk citrat 100.0 2.9E-87 6.3E-92 674.1 30.3 302 1-303 125-426 (427)
3 cd06106 ScCit3_like Saccharomy 100.0 2.1E-85 4.6E-90 661.2 31.2 303 1-303 122-427 (428)
4 PRK09569 type I citrate syntha 100.0 6.7E-85 1.4E-89 659.1 32.7 307 1-309 124-432 (437)
5 cd06103 ScCS-like Saccharomyce 100.0 5.7E-85 1.2E-89 658.2 31.1 303 1-303 122-425 (426)
6 COG0372 GltA Citrate synthase 100.0 6.8E-85 1.5E-89 649.5 26.2 286 2-310 95-386 (390)
7 PLN02456 citrate synthase 100.0 2.6E-82 5.6E-87 643.4 27.9 295 1-308 142-448 (455)
8 cd06115 AthCS_per_like Arabido 100.0 2.8E-82 6E-87 636.4 27.7 293 1-306 103-406 (410)
9 cd06116 CaCS_like Chloroflexus 100.0 1.8E-81 4E-86 626.6 26.1 285 2-306 84-379 (384)
10 cd06107 EcCS_AthCS-per_like Es 100.0 4E-81 8.7E-86 623.7 28.5 289 1-302 83-382 (382)
11 PRK14036 citrate synthase; Pro 100.0 2.7E-80 5.8E-85 617.1 26.5 282 2-307 83-369 (377)
12 PRK12351 methylcitrate synthas 100.0 3.8E-80 8.3E-85 615.7 27.5 280 1-306 86-370 (378)
13 TIGR01798 cit_synth_I citrate 100.0 2E-80 4.3E-85 623.4 25.6 286 1-306 110-410 (412)
14 cd06109 BsCS-I_like Bacillus s 100.0 8.2E-80 1.8E-84 608.4 28.7 270 2-302 78-349 (349)
15 cd06117 Ec2MCS_like_1 Subgroup 100.0 1.1E-79 2.4E-84 610.6 26.6 278 2-306 78-361 (366)
16 cd06112 citrate_synt_like_1_1 100.0 1.4E-79 3E-84 611.7 26.7 283 2-306 80-368 (373)
17 PRK14032 citrate synthase; Pro 100.0 2.2E-79 4.9E-84 621.1 28.7 292 2-303 130-437 (447)
18 PRK14035 citrate synthase; Pro 100.0 2.4E-79 5.2E-84 609.0 27.2 279 2-307 80-364 (371)
19 PRK05614 gltA type II citrate 100.0 3.6E-79 7.9E-84 615.7 27.1 282 2-303 124-419 (419)
20 cd06108 Ec2MCS_like Escherichi 100.0 5.8E-79 1.3E-83 604.7 27.0 276 2-306 78-358 (363)
21 PRK14034 citrate synthase; Pro 100.0 9.7E-79 2.1E-83 604.8 26.4 278 2-306 80-363 (372)
22 cd06113 citrate_synt_like_1_2 100.0 3.8E-78 8.2E-83 606.8 30.3 291 2-302 100-406 (406)
23 PRK14037 citrate synthase; Pro 100.0 1.9E-78 4E-83 603.9 26.6 280 2-306 83-369 (377)
24 cd06114 EcCS_like Escherichia 100.0 2.4E-77 5.2E-82 600.0 26.9 281 2-302 106-400 (400)
25 cd06111 DsCS_like Cold-active 100.0 1E-76 2.3E-81 589.0 27.3 277 2-305 78-359 (362)
26 PRK12350 citrate synthase 2; P 100.0 1.3E-76 2.8E-81 585.1 26.6 245 47-305 99-349 (353)
27 PRK12349 citrate synthase 3; P 100.0 9E-76 1.9E-80 583.6 27.7 277 2-305 84-366 (369)
28 PRK14033 citrate synthase; Pro 100.0 1.3E-75 2.8E-80 583.4 26.8 279 2-307 88-371 (375)
29 TIGR01800 cit_synth_II 2-methy 100.0 4.3E-75 9.4E-80 578.8 26.9 280 2-308 78-362 (368)
30 cd06110 BSuCS-II_like Bacillus 100.0 2.5E-74 5.4E-79 571.3 28.4 274 2-302 78-356 (356)
31 cd06118 citrate_synt_like_1 Ci 100.0 4.4E-74 9.5E-79 570.0 27.8 276 2-300 78-358 (358)
32 PF00285 Citrate_synt: Citrate 100.0 3.2E-74 6.9E-79 570.6 23.5 273 2-296 77-356 (356)
33 KOG2617|consensus 100.0 2.5E-70 5.5E-75 535.3 23.6 310 1-313 146-455 (458)
34 cd06099 CS_ACL-C_CCL Citrate s 100.0 2.9E-63 6.3E-68 460.9 20.7 208 82-300 1-213 (213)
35 cd06101 citrate_synt Citrate s 100.0 4.1E-63 8.9E-68 473.5 20.8 230 50-300 31-265 (265)
36 cd06102 citrate_synt_like_2 Ci 100.0 8.8E-61 1.9E-65 460.3 21.0 207 76-302 76-282 (282)
37 PRK06224 citrate synthase; Pro 100.0 2.4E-57 5.1E-62 433.4 21.0 228 70-306 24-260 (263)
38 cd06100 CCL_ACL-C Citryl-CoA l 100.0 1.6E-55 3.4E-60 412.5 21.9 217 71-298 1-221 (227)
39 PLN02522 ATP citrate (pro-S)-l 100.0 8.4E-51 1.8E-55 423.5 19.0 211 70-295 368-598 (608)
40 KOG1254|consensus 99.6 4.2E-16 9E-21 157.2 6.4 191 95-299 388-594 (600)
41 PRK12349 citrate synthase 3; P 64.6 1.2E+02 0.0027 30.8 12.6 70 70-144 32-105 (369)
42 cd06113 citrate_synt_like_1_2 42.2 42 0.00092 34.6 5.1 71 70-144 41-120 (406)
43 PRK14036 citrate synthase; Pro 41.7 3E+02 0.0065 28.1 11.1 70 70-144 31-104 (377)
44 PRK14032 citrate synthase; Pro 40.9 47 0.001 34.7 5.3 71 70-144 71-150 (447)
45 cd06115 AthCS_per_like Arabido 36.9 2.1E+02 0.0046 29.6 9.2 70 70-144 52-125 (410)
46 PRK14037 citrate synthase; Pro 33.3 74 0.0016 32.5 5.2 70 70-144 31-104 (377)
47 cd06118 citrate_synt_like_1 Ci 33.0 89 0.0019 31.5 5.7 70 70-144 26-99 (358)
48 PF09350 DUF1992: Domain of un 31.7 1.8E+02 0.0039 22.5 6.0 56 175-230 2-64 (71)
49 PRK10203 hypothetical protein; 28.6 2.7E+02 0.0058 24.1 7.0 55 174-228 7-67 (122)
50 PF11591 2Fe-2S_Ferredox: Ferr 27.7 26 0.00057 23.1 0.6 11 118-128 7-17 (34)
51 cd07622 BAR_SNX4 The Bin/Amphi 23.8 3.1E+02 0.0067 25.4 7.1 95 195-307 8-103 (201)
52 PRK09569 type I citrate syntha 23.6 8.6E+02 0.019 25.5 11.5 59 82-143 85-145 (437)
53 cd06108 Ec2MCS_like Escherichi 23.2 4.6E+02 0.01 26.7 8.8 71 70-143 26-98 (363)
54 PRK12351 methylcitrate synthas 23.0 8.3E+02 0.018 25.0 11.6 70 70-144 35-108 (378)
55 cd06112 citrate_synt_like_1_1 22.3 1.7E+02 0.0038 29.7 5.6 70 70-144 28-101 (373)
56 PLN03085 nucleobase:cation sym 22.0 3.7E+02 0.008 25.7 7.2 59 174-232 92-156 (221)
No 1
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=1.2e-87 Score=677.28 Aligned_cols=305 Identities=82% Similarity=1.319 Sum_probs=285.3
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|++||+++|||++|+++|++|+++|+|.+.|+++.+++.+|+..++++++||||+|+|+|++||++ ++|+++++|+++
T Consensus 122 ~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~~~~~~~~~~~~~LiAk~p~i~A~~yr~~-~~g~~~~~pd~~ 200 (427)
T cd06105 122 MLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYVYEDSMDLIAKLPCVAAKIYRNL-YRGGKIIAIDSN 200 (427)
T ss_pred HHHhCCCCCCHHHHHHHHHHhhhcccchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcCCCCCC
Confidence 3678999999999999999999999887666776777667899999999999999999999999962 468889999999
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHHH
Q psy14237 81 KDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLK 160 (360)
Q Consensus 81 ls~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~ 160 (360)
+||++|||+||+++++..+++||++||||||||++|+||||+||||||++|+|+||+|||++|+||+||||||+|++||+
T Consensus 201 ls~a~Nfl~Ml~~~~~~~~~~l~~~lvLhADHeg~NaSTfaarvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l~ 280 (427)
T cd06105 201 LDWSANFANMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLT 280 (427)
T ss_pred cCHHHHHHHHhcCCCHHHHHHHHHHHhhhccccCccchHHHHHHHhccCCCHHHHHHHHHhhcCCCCCCCcHHHHHHHHH
Confidence 99999999999988899999999999999999977999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhCC
Q psy14237 161 KLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240 (360)
Q Consensus 161 ~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~ 240 (360)
++.+++|.+++++++++||++.+++|++||||||||||..|||+++|++++.++.++++++++++++++++.+++.++++
T Consensus 281 ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~~DPRa~~lk~~~~~~~~~~~~~~~~~~ie~~a~~~l~~~~~ 360 (427)
T cd06105 281 KLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVSQLYKIVPPVLTEQGK 360 (427)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 99887776557889999999999999999999999999999999999999999888899999999999999888888888
Q ss_pred CCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHH
Q psy14237 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 306 (360)
Q Consensus 241 ~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~ 306 (360)
.|+++||||||+|++++.||||+.++||+||++||++||+||++||+..++||+||+|+|++.+.+
T Consensus 361 ~~~l~pNVDfysg~l~~~lGip~~~~ft~lFa~sR~~GW~AH~~Eq~~~~~~I~RP~s~~~~~~~~ 426 (427)
T cd06105 361 AKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALGVLSQLIWDRALGLPLERPKSVSTDGLEK 426 (427)
T ss_pred CCCCCCChhHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHHHHHHhCCCCccCCcchhHHHHhh
Confidence 999999999999999999999855899999999999999999999999888999999999998754
No 2
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=2.9e-87 Score=674.10 Aligned_cols=302 Identities=74% Similarity=1.236 Sum_probs=285.0
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|++||+++|||++|+++||+|+.++.|+.+|..+.++..+|++.++++++|||++|+|+|++||+++++|++ ++|+++
T Consensus 125 ~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~-i~p~~~ 203 (427)
T TIGR01793 125 TIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIHKTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQS-ISIDDS 203 (427)
T ss_pred HHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cCCCCC
Confidence 3688999999999999999999999889888877777777899999999999999999999999987789998 789999
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHHH
Q psy14237 81 KDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLK 160 (360)
Q Consensus 81 ls~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~ 160 (360)
+||++||++||+++++.++++||++|||||||||+|+||||+||||||++|+|+|++|||++|+||+||||||+|++||+
T Consensus 204 l~~a~Nfl~Ml~~~~~~~~~~l~~~LiLhADHeg~NaSTfaarvvaSt~ad~y~~v~Agi~aL~GPlHGgAn~~vl~~l~ 283 (427)
T TIGR01793 204 KDYSANFAHMLGYDSPSFQELMRLYLTIHSDHEGGNVSAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWLK 283 (427)
T ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHhhhcccccccchhHHHHHhhccCCCHHHHHHHHHhhccCCccCCcHHHHHHHHH
Confidence 99999999999888899999999999999999978999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhCC
Q psy14237 161 KLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240 (360)
Q Consensus 161 ~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~ 240 (360)
++.+++|...+++++++||++.+++|++||||||||||+.|||+.+|++++.+..+++++++++.++++++++++.++++
T Consensus 284 ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 363 (427)
T TIGR01793 284 SVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLRKTDPRYICQREFALKHLPDDPLFKLVSNLYKIVPGILTELGK 363 (427)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCcHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhc
Confidence 99877776667899999999999999999999999999999999999999998888899999999999999888888888
Q ss_pred CCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchh
Q psy14237 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTND 303 (360)
Q Consensus 241 ~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~ 303 (360)
.|+++||||||+|+|+++||||+.++||++|++||++||+||++||+..++||+||+|..+..
T Consensus 364 ~~~~~pNVD~~sg~l~~~lGip~~~~~t~lFavsR~~Gw~AH~ieq~~~~~~I~RP~s~~~~~ 426 (427)
T TIGR01793 364 VKNPWPNVDAHSGVLLQYYGLTEARYYTVLFGVSRALGILSQLIWDRALGLPLERPKSVSTEW 426 (427)
T ss_pred ccCCCCCcHHHHHHHHHHcCCCchhhhhhHhhhhccchHHHHHHHHHHcCCCccCCccccccc
Confidence 899999999999999999999856899999999999999999999999888999999998763
No 3
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=2.1e-85 Score=661.25 Aligned_cols=303 Identities=60% Similarity=1.079 Sum_probs=272.7
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|++||+++|||++|+++||+|+.++.|...|..+..+.++|++.+++++||+||+|+|+|++||++..+|.++++|+++
T Consensus 122 ~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~rLiAk~ptI~A~~yr~~~g~~~~~~~p~~~ 201 (428)
T cd06106 122 LLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKTEYWEPTLEDSLNLIARLPALAARIYRNVYGEGHGLGKIDPE 201 (428)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 36789999999999999999999877665555555444456888999999999999999999999743234577789999
Q ss_pred CCHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 81 KDWSANFTSMLGF-DNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 81 ls~a~nfl~ml~g-~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
+||++|||+||+. +++.++++||++|||||||||+|+||||+||+|||++|+|+||+|||++|+||+||||||+|++||
T Consensus 202 ls~a~NFL~Mlg~~p~~~~~~~l~~~LiL~ADHeg~NaSTfaarvvaST~ad~ysav~agi~aL~GPlHGGAne~v~~~l 281 (428)
T cd06106 202 VDWSYNFTSMLGYGDNLDFVDLLRLYIALHGDHEGGNVSAHTTHLVGSALSDPYLSYSAGLMGLAGPLHGLAAQEVLRWI 281 (428)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHhhhcccCCccchHHHHHHHhccCCCHHHHHHHHHHhcCCCcccChHHHHHHHH
Confidence 9999999999943 278899999999999999997799999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC--CCChHHHHHHHHHHhcchhHHh
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL--PDDSLFKLVSQVYKVVPPVLIE 237 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~--~~~~~~~~a~~le~~~~~~~~~ 237 (360)
+++.++||+..+++++++||++.+++|++||||||||||+.|||+++|+++++++. ..++++++++++|+++.+++.+
T Consensus 282 ~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk~~DPRa~~l~~~~~~l~~~~~~~~~~~a~~ie~~~~~~l~~ 361 (428)
T cd06106 282 LEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLRKPDPRFTALMEFAQTRPELENDPVVQLVQKLSEIAPGVLTE 361 (428)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 99988888544678999999999999999999999999999999999999998764 3579999999999999887788
Q ss_pred hCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchh
Q psy14237 238 TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTND 303 (360)
Q Consensus 238 ~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~ 303 (360)
+++.|+++||||||+|++|+.||||+.++||++|++||++||+||++||++.+++|+||+|+.+..
T Consensus 362 ~~~~~~l~pNVDfysg~v~~~lGip~~~~ft~lFaisR~~GW~AHi~eq~~~~~~I~RP~s~~~~~ 427 (428)
T cd06106 362 HGKTKNPFPNVDAASGVLFYHYGIREFLYYTVIFGVSRALGPLTQLVWDRILGLPIERPKSLSLEG 427 (428)
T ss_pred hccccCCCCCchhHHHHHHHHcCCChhhcchHHHHHHHHHHHHHHHHHHHhCCCCCcCCCcccccc
Confidence 888899999999999999999999854789999999999999999999998888999999998753
No 4
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=6.7e-85 Score=659.07 Aligned_cols=307 Identities=57% Similarity=0.995 Sum_probs=281.8
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCC-CCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG-VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDT 79 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~-~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~ 79 (360)
+|++||+++|||++|+++||+|++++.|+..|+++ .++.++|+..+++++||||++|+|+|++||++ .+|.++++|++
T Consensus 124 ~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~~~~~~~~~~~~~~rliA~~p~i~A~~yr~~-~~g~~~~~p~~ 202 (437)
T PRK09569 124 AIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFNKMDAWEYMYEDASDLVARIPVIAAYIYNLK-YKGDKQIPSDP 202 (437)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccccchhhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCC
Confidence 36789999999999999999998888888777665 44556789999999999999999999999963 35777889999
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 80 NKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 80 ~ls~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
++||++|||+||+++ +..+++||++||||||||++|+||||+|+++||++|+|+||+|||++|+||+||||||+|++||
T Consensus 203 ~ls~a~NFl~Ml~~~-~~~~~~l~~~LiL~ADHe~~naSTfaaRvvaSt~ad~ysav~Agi~aL~GplHGGA~e~v~~~l 281 (437)
T PRK09569 203 ELDYGANFAHMIGQP-KPYKDVARMYFILHSDHESGNVSAHTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWI 281 (437)
T ss_pred CcCHHHHHHHHhcCC-chHHHHHHHHHhhhhccCCCcchHHHHHHHhccCCCHHHHHHHHHHhccCCccCCchHHHHHHH
Confidence 999999999999985 6668999999999999996799999999999999999999999999999999999999999999
Q ss_pred HHHHHHcC-CCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhh
Q psy14237 160 KKLQQQVG-DNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIET 238 (360)
Q Consensus 160 ~~i~~~ig-~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~ 238 (360)
+++.++++ ..++++++++||++.+++|++||||||||||..|||+++|+++++++.++++++++++++++++.+++.++
T Consensus 282 ~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvyk~~DPRa~~L~~~a~~~~~~~~~~~ia~~~e~v~~~~~~~~ 361 (437)
T PRK09569 282 QQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVLRKTDPRYTAQREFCLKHLPDDPLFKLVAMIFEVAPGVLTEH 361 (437)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99987664 23367899999999999999999999999999999999999999998888899999999999998888888
Q ss_pred CCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHHhh
Q psy14237 239 GKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYS 309 (360)
Q Consensus 239 ~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~~~ 309 (360)
++.|+++||||||+|+|++.||||+.++||++|++||++||+||++||+..+++|+||++.|+|+..+.++
T Consensus 362 ~~~~~l~pNVD~~sg~l~~~lGip~~~~~t~lFaisR~~Gw~AH~iEq~~~~~~i~RP~~~Y~G~~~~~~~ 432 (437)
T PRK09569 362 GKTKNPWPNVDAQSGVIQWYYGVKEWDFYTVLFGVGRALGVMANITWDRGLGYAIERPKSVTTEMLEKWAA 432 (437)
T ss_pred cccCCCCCChHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHHHHHHhCCCCccCCccccchHHHHHHh
Confidence 88899999999999999999999845999999999999999999999998777999999999999988885
No 5
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=5.7e-85 Score=658.21 Aligned_cols=303 Identities=74% Similarity=1.248 Sum_probs=278.4
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCC-CCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG-VHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDT 79 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~-~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~ 79 (360)
+|++||+++|||++|+++||+|+++|+|++.|+++ .+++.+|+..++++++|+|++|+|+|++||+++++|+++++|++
T Consensus 122 ~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~I~A~~yr~~~~~g~~~~~p~~ 201 (426)
T cd06103 122 MIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINKTTYWEYVYEDAMDLIAKLPVVAAKIYRRKYRKGGEIGAIDS 201 (426)
T ss_pred HHHhCCCCCChHHHHHHHHHhccccccchhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCC
Confidence 36789999999999999999999988776666554 44455688899999999999999999999974347899999999
Q ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 80 NKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 80 ~ls~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
++||++||++||++++++.+++||++||||||||++|+||||+||+|||++|+|+||+|||+||+||+|||||++|++||
T Consensus 202 ~ls~aeNfl~ml~~~~~~~~~~l~~~LiL~ADHe~~NaSTfaaRvvaSt~ad~ysav~agi~aL~GplHGGA~e~v~~~l 281 (426)
T cd06103 202 KLDWSANFAHMLGYEDEEFTDLMRLYLTLHSDHEGGNVSAHTSHLVGSALSDPYLSFSAALNGLAGPLHGLANQEVLKWL 281 (426)
T ss_pred CcCHHHHHHHHhCCCCHHHHHHHHHHHhhhhccCCccchHHHHHHHhccCCCHHHHHHHHHhhcCCCcccchHHHHHHHH
Confidence 99999999999977678899999999999999996799999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhC
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETG 239 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~ 239 (360)
+++.+++|+..+++++++||++.+++|++||||||||||..|||+++|+++++++...++++++++++|+++.+++.+++
T Consensus 282 ~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~ 361 (426)
T cd06103 282 LKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLRKTDPRFTCQREFALKHLPDDPLFKLVAQCYKIIPGVLKEHG 361 (426)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCCCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99987777555678999999999999999999999999999999999999999987788999999999999987777788
Q ss_pred CCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchh
Q psy14237 240 KVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTND 303 (360)
Q Consensus 240 ~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~ 303 (360)
+.|+++||||||+|+|++.||||+.++||++|++||++||+||++||++.+++|+||+|..+..
T Consensus 362 ~~k~l~pNVDfysa~v~~~lGip~~~~ft~lFa~sR~~Gw~AH~~Eq~~~~~~i~RP~s~~~~~ 425 (426)
T cd06103 362 KVKNPYPNVDAHSGVLLQHYGMTEPQYYTVLFGVSRALGVLAQLVWSRALGLPIERPKSMSTEG 425 (426)
T ss_pred ccCCCCCChHhHHHHHHHHcCCChhhhhhHHHhHhhcchHHHHHHHHHhCCCCCCCCCcccccc
Confidence 8899999999999999999999855899999999999999999999999888899999998764
No 6
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=6.8e-85 Score=649.53 Aligned_cols=286 Identities=31% Similarity=0.459 Sum_probs=256.6
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
++.||++.|||++|++++|+|+..+... .+ .+...++++||+|++|+|+|++||+ +.|++++.|++++
T Consensus 95 ~~~~p~~~hpm~~l~~~vs~l~~~~~~~------~~----~~~~~~~a~rlia~~pti~a~~yr~--~~g~~~i~p~~~~ 162 (390)
T COG0372 95 LESLPRDAHPMAVLRTAVSALSAFYPDK------LD----LNDRREAALRLIAKLPTIAAAVYRY--SRGEPPIAPDPDL 162 (390)
T ss_pred HHhCCCCcCcHHHHHHHHHHhccccccc------cc----cchhHHHHHHHHHHhhHHHHHHHHH--hcCCCCccCCCCc
Confidence 5679999999999999999998765421 11 1126788999999999999999995 6899998899999
Q ss_pred CHHHHHHHHhCCC--C-HHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHH
Q psy14237 82 DWSANFTSMLGFD--N-HQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIW 158 (360)
Q Consensus 82 s~a~nfl~ml~g~--~-~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~ 158 (360)
+|++|||+||+|+ + |.++|+||++|||||||| +|+||||+||++||++|+|+||+|||++||||+||||||+|++|
T Consensus 163 s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe-~NASTftarvvaST~sd~ys~i~agi~aL~GPlHGGAne~v~~m 241 (390)
T COG0372 163 SYAENFLYMLFGEPPSPPVEARAMDRALILHADHE-LNASTFTARVVASTGSDLYACIAAGIGALKGPLHGGANEAVMKM 241 (390)
T ss_pred cHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhcCCcHHHHHHHHHHHcCCCccCChHHHHHHH
Confidence 9999999999986 4 599999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhH
Q psy14237 159 LKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVL 235 (360)
Q Consensus 159 l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~ 235 (360)
|+++.+ ..+++++||++.+++|++||||||||||++|||+++|+++++++. ++.++++++.++|+++.+.
T Consensus 242 l~ei~~------~~~~~~~~v~~~l~~~~~imGFGHRVYk~~DPRa~~lk~~a~~l~~~~g~~~~~~~a~~~e~~~l~~- 314 (390)
T COG0372 242 LEEIGS------SGESAEAYVRKALDRKERIMGFGHRVYKNYDPRAKVLKELAEKLGKELGDLKLYEIAEELEEIALED- 314 (390)
T ss_pred HHHHcc------cchhHHHHHHHHHhCCCCcCCCCCCCCCCCCchHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHh-
Confidence 998742 233499999999999999999999999999999999999999874 4458999999999998652
Q ss_pred HhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHHhhh
Q psy14237 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSK 310 (360)
Q Consensus 236 ~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~~~~ 310 (360)
.++ .|+++||||||+|++|+.|||| .++||+||++||++||+||++||+.++++|+||++.|+|+..+.+..
T Consensus 315 -~~~-~k~l~PNvDfysg~v~~~lGiP-~~~fT~lFaiaR~~GW~AH~~Eq~~~~~riiRPr~~Y~G~~~r~~~~ 386 (390)
T COG0372 315 -LGF-EKKLYPNVDFYSGIVYRALGIP-TDMFTPLFAIARTVGWIAHWIEQKEDGNKIIRPRALYTGPEERDYVP 386 (390)
T ss_pred -hhc-ccCCCCccccchHHHHHHcCCC-HHhhhhhhhhhhHHHHHHHHHHHHhccCCccCChhhhcCcccccccc
Confidence 234 7999999999999999999998 58999999999999999999999998669999999999999876544
No 7
>PLN02456 citrate synthase
Probab=100.00 E-value=2.6e-82 Score=643.38 Aligned_cols=295 Identities=43% Similarity=0.653 Sum_probs=272.0
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|++||+++|||++|+++|++|++++++...+..+.++..+|+..+++++|||||+|+|+|++||+ +.|++++.|+++
T Consensus 142 ~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~g~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~--~~g~~~~~P~~~ 219 (455)
T PLN02456 142 VIDALPHDAHPMTQLVSGVMALSTFSPDANAYLRGQHKYKSWEVRDEDIVRLIGKLPTLAAAIYRR--MYGRGPVIPDNS 219 (455)
T ss_pred HHHhCCCcCCcHHHHHHHHHhhhhcCcchhhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCCC
Confidence 367899999999999999999999999887777777766679999999999999999999999996 678889899999
Q ss_pred CCHHHHHHHHhCC-------CCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhh-cCCcChHHHHHHhhhcccCCCCcccc
Q psy14237 81 KDWSANFTSMLGF-------DNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVG-SALSDPYLSFAAGMNGLAGPLHGLAN 152 (360)
Q Consensus 81 ls~a~nfl~ml~g-------~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvva-St~ad~ysavaAgi~aL~GplHGGA~ 152 (360)
+||++|||+||++ +++.++++||++|||||||| +|+|||++|+++ ||++|+|+||+|||++|+||+|||||
T Consensus 220 ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~LiLhADHe-~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~ 298 (455)
T PLN02456 220 LDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFIIHADHE-GGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGAN 298 (455)
T ss_pred CCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHeeeccCC-CCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChH
Confidence 9999999999987 48899999999999999999 899999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhh---CCCChHHHHHHHHHH
Q psy14237 153 QEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKH---LPDDSLFKLVSQVYK 229 (360)
Q Consensus 153 e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~---~~~~~~~~~a~~le~ 229 (360)
|+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ .+++++++++.++|+
T Consensus 299 e~v~~~l~ei----~---~~~~v~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~ 371 (455)
T PLN02456 299 EAVLKMLKEI----G---TVENIPEYVEGVKNSKKVLPGFGHRVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEE 371 (455)
T ss_pred HHHHHHHHHh----C---CHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999999876 4 57899999999999999999999999999999999999999965 467899999999999
Q ss_pred hcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcC-CCcccCccccchhHHHHh
Q psy14237 230 VVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LPIERPKSLSTNDLVKQY 308 (360)
Q Consensus 230 ~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~-~~i~RP~~~y~g~~~~~~ 308 (360)
++. .+++++.|+++||||||+|+|++.|||| .++||++|++||++||+||++||...+ .+|+||++.|+|+..+.+
T Consensus 372 ~~~--~~~~~~~r~l~pNVDfysg~l~~~lGip-~~~~t~lFaisR~~Gw~AH~~E~~~~~~~ri~RP~~~Y~G~~~~~~ 448 (455)
T PLN02456 372 VAL--LDEYFKVRKLYPNVDFYSGVLLRALGFP-EEFFTVLFAVSRAAGYLSQWDEALGLPDERIMRPKQVYTGEWLRHY 448 (455)
T ss_pred HHH--HHHhcCCCCCCcCcHHHHHHHHHHcCcC-hhhccchhhhhhHHHHHHHHHHHHhCCcccccCCCccccCCCcccc
Confidence 762 3567889999999999999999999999 599999999999999999999999863 589999999999965543
No 8
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=2.8e-82 Score=636.44 Aligned_cols=293 Identities=28% Similarity=0.421 Sum_probs=259.6
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|++||+++|||++||++||+|+.+++....-..+.+....++..+++++||||++|+|+|++||+ +.|+++++|+++
T Consensus 103 ~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~rliA~~p~i~A~~~r~--~~g~~~~~p~~~ 180 (410)
T cd06115 103 MIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYKNKQVRDKQIVRILGKAPTIAAAAYRR--RAGRPPNLPSQD 180 (410)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHhccCccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCcCCCCC
Confidence 367899999999999999999998775321100111110134667889999999999999999995 689999999999
Q ss_pred CCHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccH
Q psy14237 81 KDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 153 (360)
Q Consensus 81 ls~a~nfl~ml~g~-------~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e 153 (360)
+||++|||+||+|. ++.++++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||||
T Consensus 181 ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~-~naSTfaarv~aSt~ad~ysav~agi~aL~GplHGGA~e 259 (410)
T cd06115 181 LSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHE-MNCSTAAVRHLASSGVDVYTAVAGAVGALYGPLHGGANE 259 (410)
T ss_pred CCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccC-CCchHHHHHHHHhcCCCHHHHHHHHHhhccCCcccchHH
Confidence 99999999999872 6789999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q psy14237 154 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKV 230 (360)
Q Consensus 154 ~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~ 230 (360)
+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +.++++++++++|++
T Consensus 260 ~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~ 332 (410)
T cd06115 260 AVLRMLAEI----G---TVENIPAFIEGVKNRKRKLSGFGHRVYKNYDPRAKIIKKLADEVFEIVGKDPLIEIAVALEKA 332 (410)
T ss_pred HHHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 999999876 4 568999999999999999999999999999999999999998864 457999999999998
Q ss_pred cchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcC-CCcccCccccchhHHH
Q psy14237 231 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LPIERPKSLSTNDLVK 306 (360)
Q Consensus 231 ~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~-~~i~RP~~~y~g~~~~ 306 (360)
+.+ .++++.|+++||||||+|+|++.|||| .++||++|++||++||+||++||+.++ ++|+||++.|+|+..+
T Consensus 333 ~~~--~~~~~~k~l~pNVD~ysa~l~~~lG~p-~~~~t~lFa~sR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~G~~~~ 406 (410)
T cd06115 333 ALS--DEYFVKRKLYPNVDFYSGLIYRAMGFP-TDFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQLYTGVWLR 406 (410)
T ss_pred HHh--hhhhcccCCCCChHHHHHHHHHHcCCC-hHhhhhHHHHHhhhhHHHHHHHHHhCCCCcccCcccccCCCCCC
Confidence 754 446778999999999999999999998 599999999999999999999999874 6899999999998543
No 9
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=1.8e-81 Score=626.58 Aligned_cols=285 Identities=30% Similarity=0.431 Sum_probs=257.3
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
|++||+++|||++|+++||+|++++++..++ ...+...++++||+||+|+|+|++||+ +.|+++++|++++
T Consensus 84 l~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~-------~~~~~~~~~~~rliA~~p~i~A~~~r~--~~g~~~~~p~~~l 154 (384)
T cd06116 84 MDGFRYDAHPMGILISSVAALSTFYPEAKNI-------GDEEQRNKQIIRLIGKMPTIAAFAYRH--RLGLPYVLPDNDL 154 (384)
T ss_pred HHhcCcCCCcHHHHHHHHHhhhhcCcccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCccCCCCCC
Confidence 6789999999999999999999987643211 124566778999999999999999995 6799999999999
Q ss_pred CHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHH
Q psy14237 82 DWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQE 154 (360)
Q Consensus 82 s~a~nfl~ml~g~-------~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~ 154 (360)
||++|||+||+|. +++++++||++|||||||| +||||||+||++||++|+|+||+|||++|+||+||||||+
T Consensus 155 s~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~-~n~STfaarv~aSt~ad~ysav~agi~aL~GplHGGA~e~ 233 (384)
T cd06116 155 SYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHE-QNCSTSAMRSVGSSRADPYTAVAAAVAALYGPLHGGANEA 233 (384)
T ss_pred CHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCC-CCchhHHHhhhhccCCCHHHHHHHHHHhccCCcccchHHH
Confidence 9999999999873 6889999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhc
Q psy14237 155 VLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVV 231 (360)
Q Consensus 155 v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~ 231 (360)
|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +.++++++++++|+++
T Consensus 234 v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ia~~~e~~~ 306 (384)
T cd06116 234 VLRMLQQI----G---SPKNIPDFIETVKQGKERLMGFGHRVYKNYDPRARIIKKIADEVFEATGRNPLLDIAVELEKIA 306 (384)
T ss_pred HHHHHHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 99999876 4 468899999999999999999999999999999999999998863 4578999999999977
Q ss_pred chhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcC-CCcccCccccchhHHH
Q psy14237 232 PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LPIERPKSLSTNDLVK 306 (360)
Q Consensus 232 ~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~-~~i~RP~~~y~g~~~~ 306 (360)
.+ .+++..|+++||||||+|++++.|||| .++||++|++||++||+||++||.+.+ ++|+||++.|+|+..+
T Consensus 307 ~~--~~~~~~k~l~pNvD~ysa~l~~~lGip-~~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~G~~~~ 379 (384)
T cd06116 307 LE--DEYFISRKLYPNVDFYSGLIYQALGFP-TEAFTVLFAIPRTSGWLAQWIEMLRDPEQKIARPRQVYTGPRDR 379 (384)
T ss_pred HH--hhhhcccCCCCChHHHHHHHHHHhCCC-hhhccchhhhhhhchHHHHHHHHHhCcCCcccCccccccCCCCC
Confidence 54 456778999999999999999999998 599999999999999999999999863 6899999999998543
No 10
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=4e-81 Score=623.73 Aligned_cols=289 Identities=29% Similarity=0.428 Sum_probs=257.2
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|+.||+++|||++|+++||+|+++++...+...+......++..+++++||||++|+|+|++||+ ++|+++++|+++
T Consensus 83 ~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liA~~p~i~A~~yr~--~~g~~~~~P~~~ 160 (382)
T cd06107 83 LIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTGDLYQNNPEVRDKQIIRTLAKMPTIAAAAYCH--RIGRPFVYPRAN 160 (382)
T ss_pred HHHhCCCCCCcHHHHHHHHHhhcccCccccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCCCCC
Confidence 367899999999999999999998775321111110000134677888999999999999999995 689999999999
Q ss_pred CCHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccH
Q psy14237 81 KDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 153 (360)
Q Consensus 81 ls~a~nfl~ml~g~-------~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e 153 (360)
+||++|||+||+|. +++++++||++|||||||| +|+||||+||++||++|+|+|++||+++|+||+||||||
T Consensus 161 ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~ST~aaRv~aSt~ad~~s~v~aai~al~GplHGGA~e 239 (382)
T cd06107 161 LSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHE-MNCSTSAARHTGSSLADPISCMAAAIAALYGPLHGGANE 239 (382)
T ss_pred CCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccC-CcchhHHHHHHHhcCCcHHHHHHHHHhhccCCcccchHH
Confidence 99999999999873 5789999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHh
Q psy14237 154 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKV 230 (360)
Q Consensus 154 ~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~ 230 (360)
+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +.++++++++++|++
T Consensus 240 ~v~~~l~ei----~---~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~ 312 (382)
T cd06107 240 AALKMLREI----G---TPENVPAFIERVKNGKRRLMGFGHRVYKNYDPRAKVIREILHEVLTEVEKDPLLKVAMELERI 312 (382)
T ss_pred HHHHHHHHh----C---ChHHHHHHHHHHHhcCCCcCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999876 4 568999999999999999999999999999999999999998874 458999999999997
Q ss_pred cchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcC-CCcccCccccch
Q psy14237 231 VPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LPIERPKSLSTN 302 (360)
Q Consensus 231 ~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~-~~i~RP~~~y~g 302 (360)
+.+ +++++.|+++||||||+|++++.|||| +++||++|++||++||+||++||+..+ ++|+||++.|+|
T Consensus 313 ~~~--~~~~~~k~l~pNvD~~sa~~~~~lG~p-~~~~t~lf~~sR~~Gw~AH~~Eq~~~~~~~i~RP~~~Y~G 382 (382)
T cd06107 313 ALE--DEYFVSRKLYPNVDFYSGFIYKALGFP-PEFFTVLFAVARTSGWMAHWREMMEDPLQRIWRPRQVYTG 382 (382)
T ss_pred HHH--HhhhccCCCCcChHHHHHHHHHHcCCC-hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceeCcccccCC
Confidence 654 446678999999999999999999998 599999999999999999999999986 689999999997
No 11
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=2.7e-80 Score=617.15 Aligned_cols=282 Identities=28% Similarity=0.427 Sum_probs=257.2
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
|++||+++|||++|+++||+|+.+++..+ ....+..+++++||+|++|+|+|++||+ ++|+++++|++++
T Consensus 83 i~~~p~~~hpm~~L~~~vs~l~~~~~~~~--------~~~~~~~~~~~~rliA~~p~i~a~~~r~--~~g~~~~~p~~~l 152 (377)
T PRK14036 83 MKCFPETGHPMDALQASAAALGLFYSRRA--------LDDPEYIRDAVVRLIAKIPTMVAAFQLI--RKGNDPIQPRDDL 152 (377)
T ss_pred HHhCCCCCCHHHHHHHHHHHhhhcCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCC
Confidence 67899999999999999999998765321 1225678899999999999999999984 7899999999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
||++|||+||+|+ ++.++++||++|||||||| +||||||+|+++||++|+|+|++||+++|+||+||||||+|++||
T Consensus 153 ~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg-~naST~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~e~v~~ml 231 (377)
T PRK14036 153 DYAANFLYMLTEREPDPLAARIFDRCLILHAEHT-INASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGANEDVLAML 231 (377)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHHccCccccChHHHHHHHH
Confidence 9999999999985 8899999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhh---CCCChHHHHHHHHHHhcchhHH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKH---LPDDSLFKLVSQVYKVVPPVLI 236 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~---~~~~~~~~~a~~le~~~~~~~~ 236 (360)
+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++ .++++++++++++|+++.+.
T Consensus 232 ~~i----~---~~~~~~~~v~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~-- 302 (377)
T PRK14036 232 EEI----G---SVENVRPYLDERLANKQKIMGFGHREYKVKDPRATILQKLAEELFARFGHDEYYEIALELERVAEER-- 302 (377)
T ss_pred HHh----C---ChhhHHHHHHHHHHCCCceecCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--
Confidence 876 4 56899999999999999999999999999999999999999876 35789999999999988653
Q ss_pred hhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHH
Q psy14237 237 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 307 (360)
Q Consensus 237 ~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~ 307 (360)
+..|+++||||||+|++++.|||| +++||++|++||++||+||++||..++ +|+||++.|+|+..+.
T Consensus 303 --~~~k~l~pNvD~~sa~l~~~lGip-~~~~t~lf~~sR~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~ 369 (377)
T PRK14036 303 --LGPKGIYPNVDFYSGLVYRKLGIP-RDLFTPIFAIARVAGWLAHWREQLGAN-RIFRPTQIYTGSHNRR 369 (377)
T ss_pred --hccCCCCcChHHHHHHHHHHcCCC-hhhhhhHHHHHhHHHHHHHHHHHHhcC-cccCCCceecCCCCCC
Confidence 356899999999999999999998 499999999999999999999999975 8999999999986543
No 12
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=3.8e-80 Score=615.70 Aligned_cols=280 Identities=24% Similarity=0.346 Sum_probs=250.6
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|++||+++|||++|+++||+|+++|+... +..++..+++++||||++|+|+|++||++ ..|+++.+|+++
T Consensus 86 ~i~~~p~~~hPM~~L~~~vs~l~~~d~~~~--------~~~~~~~~~~a~rliA~~p~i~a~~~r~~-~~~~~~~p~~~~ 156 (378)
T PRK12351 86 VLEAIPAAAHPMDVMRTGVSVLGCLLPEKE--------DHNFSGARDIADRLLASLGSILLYWYHYS-HNGRRIEVETDD 156 (378)
T ss_pred HHHhCCccCCHHHHHHHHHHhhcccCcccc--------cCChHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCccCCCCCc
Confidence 367899999999999999999998775321 11246678899999999999999999964 335555445778
Q ss_pred CCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHH
Q psy14237 81 KDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIW 158 (360)
Q Consensus 81 ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~ 158 (360)
+||++|||+||+|+ ++.++++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||||+|++|
T Consensus 157 ls~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~naST~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e~v~~m 235 (378)
T PRK12351 157 DSIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEI 235 (378)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHhccCCCHHHHHHHHHHhccCCccCchHHHHHHH
Confidence 99999999999885 8899999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhh---CCCChHHHHHHHHHHhcchhH
Q psy14237 159 LKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKH---LPDDSLFKLVSQVYKVVPPVL 235 (360)
Q Consensus 159 l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~---~~~~~~~~~a~~le~~~~~~~ 235 (360)
|+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ .++++++++++++|+++.+
T Consensus 236 l~~i----~---~~~~~~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~-- 306 (378)
T PRK12351 236 QQRY----D---TPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETVMWE-- 306 (378)
T ss_pred HHHh----C---CHHHHHHHHHHHHhCCCccccCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--
Confidence 9876 4 57899999999999999999999999999999999999999875 3567999999999998743
Q ss_pred HhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHH
Q psy14237 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 306 (360)
Q Consensus 236 ~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~ 306 (360)
.|+++||||||+|++++.|||| .++||++|++||++||+||++||++++ +|+||++.|+|+..+
T Consensus 307 -----~k~l~pNvD~ysg~l~~~lG~p-~~~~t~lF~~sR~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~ 370 (378)
T PRK12351 307 -----EKKMFPNLDWFSAVSYHMMGVP-TAMFTPLFVISRTTGWAAHVIEQRQDN-KIIRPSANYTGPEDR 370 (378)
T ss_pred -----HhCCCCChHHHHHHHHHHcCCC-HHhhhhHHHHHHHHHHHHHHHHHHhcC-CccCCcceecCCCCC
Confidence 3799999999999999999998 499999999999999999999999875 888999999998543
No 13
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=2e-80 Score=623.37 Aligned_cols=286 Identities=30% Similarity=0.425 Sum_probs=254.8
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|++||+++|||++|+++||+|+.+++. ..+. ...+...++++||||++|+|+|++||+ ++|+++++|+++
T Consensus 110 ~i~~~p~~~hPM~~L~~~vs~l~~~~~~------~~~~-~~~~~~~~~a~~liA~~p~i~A~~yr~--~~g~~~i~p~~~ 180 (412)
T TIGR01798 110 FFNGFRRDAHPMAVMVGVVGALSAFYHD------SLDI-NDPRHREIAAIRLIAKIPTLAAMSYKY--SIGQPFVYPRND 180 (412)
T ss_pred HHHhCCCcCChHHHHHHHHHHHhhhCcc------cccc-CCHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCcCCCCC
Confidence 3678999999999999999999986532 1111 124566778999999999999999994 789999999999
Q ss_pred CCHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccH
Q psy14237 81 KDWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQ 153 (360)
Q Consensus 81 ls~a~nfl~ml~g~-------~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e 153 (360)
+||++|||+||+|. ++.++++||++|||||||| +|+||||+||++||++|+|+||+|||++|+||+||||||
T Consensus 181 ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg-~n~STfaaRv~aSt~ad~ysav~agi~aL~GplHGGA~e 259 (412)
T TIGR01798 181 LSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHE-QNASTSTVRLAGSSGANPFACIAAGIAALWGPAHGGANE 259 (412)
T ss_pred CCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCC-CCcccceeeeeecCCCCHHHHHHHHhhhccCccccchHH
Confidence 99999999999872 7789999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcchhHHHHHHHHHHhCC--CcccccCCCCCCCCCCcHHHHHHHHHhhC---C--CChHHHHHHH
Q psy14237 154 EVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSG--QVVPGYGHAVLRKTDPRYTCQREFAQKHL---P--DDSLFKLVSQ 226 (360)
Q Consensus 154 ~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g--~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~--~~~~~~~a~~ 226 (360)
+|++||+++ + +++++++||++.++++ ++||||||||||+.|||+++|+++++++. + .+++++++++
T Consensus 260 ~v~~ml~ei----~---~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~g~~~~~~~~~a~~ 332 (412)
T TIGR01798 260 AALKMLEEI----G---SVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELGLHDDPLFKLAME 332 (412)
T ss_pred HHHHHHHHh----C---ChhHHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 999999876 4 4689999999999888 49999999999999999999999987752 2 3689999999
Q ss_pred HHHhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcC-CCcccCccccchhHH
Q psy14237 227 VYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LPIERPKSLSTNDLV 305 (360)
Q Consensus 227 le~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~-~~i~RP~~~y~g~~~ 305 (360)
+|+++.+ .++++.|+++||||||+|+++++|||| .++||++|++||++||+||++||..++ ++|+||++.|+|+..
T Consensus 333 ~e~~~~~--~~~~~~k~l~pNvD~~sa~l~~~lG~p-~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~~l~RP~~~Y~G~~~ 409 (412)
T TIGR01798 333 LEKIALN--DPYFIERKLYPNVDFYSGIILKAMGIP-TSMFTVIFALARTVGWISHWSEMISDPGQKIGRPRQLYTGEEQ 409 (412)
T ss_pred HHHHHHh--hhhhccCCCCcChHHHHHHHHHHcCCC-hhhhhhHHHHHhhhhHHHHHHHHHhCCCCcccCchhccCCCCC
Confidence 9997654 356778999999999999999999998 599999999999999999999999863 699999999999754
Q ss_pred H
Q psy14237 306 K 306 (360)
Q Consensus 306 ~ 306 (360)
+
T Consensus 410 ~ 410 (412)
T TIGR01798 410 R 410 (412)
T ss_pred C
Confidence 3
No 14
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=8.2e-80 Score=608.44 Aligned_cols=270 Identities=26% Similarity=0.357 Sum_probs=252.4
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
|++| +++|||++|++++|+++.+ +.++++++|+|++|+|+|++||+ +.|++++.|++++
T Consensus 78 ~~~~-~~~~pm~~l~~~~s~~~~~------------------~~~~~a~~liA~~p~i~a~~~r~--~~g~~~~~p~~~l 136 (349)
T cd06109 78 LPAL-AGLDPMDALRALLALLPDS------------------PDLATALRLLAAAPVITAALLRL--SRGKQPIAPDPSL 136 (349)
T ss_pred HHhC-CCcCHHHHHHHHHHhcCch------------------hHHHHHHHHHHHHHHHHHHHHHH--HcCCCCcCCCCCC
Confidence 5678 8999999999999999862 13578999999999999999995 6788899999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
||++|||+||+|+ ++.++++||++|||||||| +||||||+|+++||++|+|+||+|||++|+||+||||||+|++||
T Consensus 137 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~v~~~l 215 (349)
T cd06109 137 SHAADYLRMLTGEPPSEAHVRALDAYLVTVADHG-MNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPGPVLDML 215 (349)
T ss_pred CHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccC-CCchhhHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHHHHHH
Confidence 9999999999985 7889999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhC
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETG 239 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~ 239 (360)
+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++..+++++++++++|+++.+++.+++
T Consensus 216 ~ei----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~a~~ie~~~~~~~~~~~ 288 (349)
T cd06109 216 DAI----G---TPENAEAWLREALARGERLMGFGHRVYRVRDPRADVLKAAAERLGAPDERLEFAEAVEQAALALLREYK 288 (349)
T ss_pred HHh----C---ChhhHHHHHHHHHHcCCeecCCCCCCCCCCCcCHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhc
Confidence 876 3 468899999999999999999999999999999999999999988888999999999999988777788
Q ss_pred CCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccch
Q psy14237 240 KVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTN 302 (360)
Q Consensus 240 ~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g 302 (360)
+.|+++||||||+|+++++|||| .++||++|++||++||+||++||+.++ +|+||++.|+|
T Consensus 289 ~~r~l~pNvD~~sg~l~~~lGip-~~~~t~lF~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G 349 (349)
T cd06109 289 PGRPLETNVEFYTALLLEALGLP-REAFTPTFAAGRTAGWTAHVLEQARTG-RLIRPQSRYVG 349 (349)
T ss_pred CCCCCCCCchhhHHHHHHHhCCC-hhhhhhHHHHHhHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 88999999999999999999998 499999999999999999999999865 88999999986
No 15
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=1.1e-79 Score=610.65 Aligned_cols=278 Identities=23% Similarity=0.318 Sum_probs=248.8
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCC-CCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAI-DTN 80 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p-~~~ 80 (360)
|++||+++|||++|+++||+|+++|++... ...+...++++||||++|+|+|++||+ +.|..++.| +++
T Consensus 78 i~~~p~~~hpm~~l~~~vs~l~~~~~~~~~--------~~~~~~~~~a~rlia~~p~i~a~~~r~--~~~~~~i~p~~~~ 147 (366)
T cd06117 78 LEQLPAAAHPMDVMRTGVSVLGCVLPEKED--------HPVSGARDIADRLMASLGSILLYWYHY--SHNGKRIEVETDD 147 (366)
T ss_pred HHhCCccCCHHHHHHHHHhhhcccCccccc--------CChHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCccCCCCCc
Confidence 678999999999999999999998764321 123456788999999999999999996 345445555 668
Q ss_pred CCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHH
Q psy14237 81 KDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIW 158 (360)
Q Consensus 81 ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~ 158 (360)
+||++|||+||+|+ ++.++++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||||+|++|
T Consensus 148 ~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~n~ST~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~v~~~ 226 (366)
T cd06117 148 DSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHE-FNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEI 226 (366)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccC-CchHHHHHHHHHccCCcHHHHHHHHHHhccCCccCchHHHHHHH
Confidence 99999999999985 8899999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhH
Q psy14237 159 LKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVL 235 (360)
Q Consensus 159 l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~ 235 (360)
|+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +..+++++++++|+++.+
T Consensus 227 l~~i----~---~~~~~~~~i~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~-- 297 (366)
T cd06117 227 QQRY----E---SADEAEADIRRRVENKEVVIGFGHPVYTIADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVMWE-- 297 (366)
T ss_pred HHHh----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--
Confidence 9866 4 468999999999999999999999999999999999999998874 457899999999997743
Q ss_pred HhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHH
Q psy14237 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 306 (360)
Q Consensus 236 ~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~ 306 (360)
.|+++||||||+|++++.||||+ ++||++|++||++||+||++||++++ +|+||++.|+|+..+
T Consensus 298 -----~k~l~pNvD~~s~~l~~~lG~p~-~~~t~lf~isR~~Gw~AH~~Eq~~~~-~~~RP~~~Y~G~~~~ 361 (366)
T cd06117 298 -----EKKMFPNLDWFSAVSYHMMGVPT-AMFTPLFVIARTTGWSAHIIEQRQDG-KIIRPSANYTGPEDL 361 (366)
T ss_pred -----HhCCCcCcHHHHHHHHHHcCcCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceecCCCCC
Confidence 47899999999999999999984 89999999999999999999999875 888999999997543
No 16
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=1.4e-79 Score=611.72 Aligned_cols=283 Identities=28% Similarity=0.443 Sum_probs=258.8
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
|++||+++|||++||++||+|+++|++.+.+ ..+|+...+++++|+|++|+|+|++||+ ++|++++.|++++
T Consensus 80 i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~~------~~~~~~~~~~a~~liA~~p~i~a~~~r~--~~g~~~~~p~~~l 151 (373)
T cd06112 80 MKCFPETGHPMDMLQATVAALGMFYPKPEVL------KPNPDYIDAATVKLIAKMPTLVAMWARI--RNGDDPIEPRPDL 151 (373)
T ss_pred HHhCCCCCCHHHHHHHHHHhhhccCcccccc------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCcCCCCCC
Confidence 6789999999999999999999988753211 1257888999999999999999999984 7899999999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
||++||++||+|+ ++.++++||++|||||||| +|+||||+|+++||++|+|+|++||+++|+||+||||||+|++||
T Consensus 152 s~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg-~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~~~~~l 230 (373)
T cd06112 152 DYAENFLYMLFGEEPDPATAKILDACLILHAEHT-MNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEML 230 (373)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 9999999999985 8899999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---C-CChHHHHHHHHHHhcchhH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---P-DDSLFKLVSQVYKVVPPVL 235 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~-~~~~~~~a~~le~~~~~~~ 235 (360)
+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. + .++++++++++|+++.+
T Consensus 231 ~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~~~~~-- 301 (373)
T cd06112 231 EEI----G---SPENVKAYLDKKLANKQKIWGFGHRVYKTKDPRATILQKLAEDLFAKMGELSKLYEIALEVERLCEE-- 301 (373)
T ss_pred HHh----C---CHHHHHHHHHHHHhcCCeeeCCCCccCCCCCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHH--
Confidence 876 4 568999999999999999999999999999999999999998875 2 57899999999998754
Q ss_pred HhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHH
Q psy14237 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 306 (360)
Q Consensus 236 ~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~ 306 (360)
+++.|+++||||||+|++++.|||| .++||++|++||++||+||++||++++ +|+||++.|+|+..+
T Consensus 302 --~~~~k~l~pNvd~~s~~l~~~lG~p-~~~~t~lF~isR~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~ 368 (373)
T cd06112 302 --LLGHKGVYPNVDFYSGIVYKELGIP-ADLFTPIFAVARVAGWLAHWKEQLGDN-RIFRPTQIYIGEIDR 368 (373)
T ss_pred --HhCcCCCCcChHHHHHHHHHHhCcC-hHhhchHHHHHhHHHHHHHHHHHHhcc-CccCCCceecCCCCC
Confidence 4456899999999999999999998 599999999999999999999999875 899999999998544
No 17
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=2.2e-79 Score=621.15 Aligned_cols=292 Identities=29% Similarity=0.427 Sum_probs=258.4
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHH--hcCCCC--CCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNT--FQGGKG--IGAI 77 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~--~~~G~~--~~~p 77 (360)
++++| ++|||++|+++||+|+++++... +.+|+...++++||||++|+|+|++||+. ++.|++ +.+|
T Consensus 130 i~~~p-~~hPM~~L~a~vsaL~~~~~~~~--------~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p 200 (447)
T PRK14032 130 ILKAP-SKDIMNSLARSVLALYSYDDNPD--------DTSIDNVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPP 200 (447)
T ss_pred HHhCC-CcCHHHHHHHHHHhhhhcCCCcc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCC
Confidence 57899 79999999999999998775321 13488899999999999999999999831 232665 4589
Q ss_pred CCCCCHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHH
Q psy14237 78 DTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQE 154 (360)
Q Consensus 78 ~~~ls~a~nfl~ml~g~---~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~ 154 (360)
++++||++|||+||+|+ ++.++++||++||||||||++|+||||+|++|||++|+|+||+|||++|+||+||||||+
T Consensus 201 ~~~ls~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~ 280 (447)
T PRK14032 201 KPELSTAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIK 280 (447)
T ss_pred CCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHccCCcHHHHHHHHHHhccCccccCHHHH
Confidence 99999999999999875 688899999999999999867999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHh-----CCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHH
Q psy14237 155 VLIWLKKLQQQVGDNVSEEKLKEFIWNTLK-----SGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQ 226 (360)
Q Consensus 155 v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~-----~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~ 226 (360)
|++||+++.+..++..+++++++||++.++ +|++||||||||||+.|||+++|+++++++. +.+++++++++
T Consensus 281 v~~~l~ei~~~~~~~~s~~~v~~~v~~~l~~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~ 360 (447)
T PRK14032 281 VMEMFEDIKENVKDWEDEDEIADYLTKILNKEAFDKSGLIYGMGHAVYTISDPRAVILKKFAEKLAKEKGREEEFNLYEK 360 (447)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCCcccCCCCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 999999997554444467899999999887 5689999999999999999999999998863 45678999999
Q ss_pred HHHhcchhHHh-hCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchh
Q psy14237 227 VYKVVPPVLIE-TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTND 303 (360)
Q Consensus 227 le~~~~~~~~~-~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~ 303 (360)
+|+++.+.+.+ +++.|+++||||||+|+|++.|||| .++||++|++||++||+||++||+.++++|+||++.|+|+
T Consensus 361 ~e~~~~~~~~~~~~~~k~l~pNVDfysa~i~~~lGip-~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~YvG~ 437 (447)
T PRK14032 361 IEKLAPELIAEERGIYKGVSANVDFYSGFVYDMLGIP-EELYTPLFAIARIVGWSAHRIEELVNGGKIIRPAYKSVLE 437 (447)
T ss_pred HHHHHHHHHHHhhccCCCCCcChhhHHHHHHHHcCCC-hhhhhhhHHHHhHHHHHHHHHHHHhcCCceecccceeeCC
Confidence 99987665543 4677999999999999999999998 4999999999999999999999996666999999999998
No 18
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=2.4e-79 Score=608.96 Aligned_cols=279 Identities=27% Similarity=0.395 Sum_probs=254.6
Q ss_pred cCCC-CCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 2 LNNF-PNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 2 i~~l-P~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
++++ |+++|||++|+++||+|+.+|++.. +.+|+..+++++||+|++|+|+|++||+ ++|++++.|+++
T Consensus 80 i~~~~~~~~hpm~~l~~~vs~l~~~~~~~~--------~~~~~~~~~~a~rliA~~p~i~A~~~r~--~~g~~~~~p~~~ 149 (371)
T PRK14035 80 FEEYSTDHVHPMTALRTSVSYLAHFDPDAE--------EESDEARYERAIRIQAKVASLVTAFARV--RQGKEPLKPRPD 149 (371)
T ss_pred HHhcCCcCCCHHHHHHHHHHHHhccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCCCCC
Confidence 3455 4799999999999999999876431 1247888999999999999999999984 789999999999
Q ss_pred CCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHH
Q psy14237 81 KDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIW 158 (360)
Q Consensus 81 ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~ 158 (360)
+||++|||+||+|+ ++.++++||++|||||||| +|+||||+|+++||++|+|+||+||+++|+||+||||||+|++|
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg-~naST~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~e~v~~~ 228 (371)
T PRK14035 150 LSYAANFLYMLRGELPTDIEVEAFNKALVLHADHE-LNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGANERVMDM 228 (371)
T ss_pred CCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccChHHHHHHH
Confidence 99999999999986 7888999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhH
Q psy14237 159 LKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVL 235 (360)
Q Consensus 159 l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~ 235 (360)
|+++ + +.+++++||++.+++|++||||||||||+.|||+++|+++++++. +.++++++++++|+++.+
T Consensus 229 l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~-- 299 (371)
T PRK14035 229 LSEI----R---SIGDVDAYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKGTGREELFEMSVKIEKRMKE-- 299 (371)
T ss_pred HHHh----C---ChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH--
Confidence 9876 3 468999999999999999999999999999999999999998874 567999999999998743
Q ss_pred HhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHH
Q psy14237 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 307 (360)
Q Consensus 236 ~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~ 307 (360)
.|+++||||||+|++++.|||| .++||++|++||++||+||++||+.++ +|+||++.|+|+..+.
T Consensus 300 -----~k~l~pNvD~~s~~l~~~lG~p-~~~~t~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~~~ 364 (371)
T PRK14035 300 -----EKGLIPNVDFYSATVYHVMGIP-HDLFTPIFAVSRVAGWIAHILEQYKDN-RIMRPRAKYIGETNRK 364 (371)
T ss_pred -----hcCCCCChHHHHHHHHHHcCCC-hHhhhhHHHHHhHHHHHHHHHHHHhcC-CccCCCccccCCCCCC
Confidence 4789999999999999999998 499999999999999999999999865 8999999999986543
No 19
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=3.6e-79 Score=615.66 Aligned_cols=282 Identities=29% Similarity=0.431 Sum_probs=252.9
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
|++||+++|||++|+++||+|+.+++. ..++. ..+...+++++|||++|+|+|++||+ +.|+++++|++++
T Consensus 124 i~~~p~~~hPM~~L~~~vs~l~~~~~~------~~~~~-~~~~~~~~a~rlia~~p~i~A~~~r~--~~g~~~~~p~~~l 194 (419)
T PRK05614 124 FRGFRRDAHPMAVLCGVVGALSAFYHD------SLDIN-DPEHREIAAIRLIAKMPTLAAMAYKY--SIGQPFVYPRNDL 194 (419)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhhcCcc------ccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCCCCcc
Confidence 678999999999999999999986532 12222 24556688999999999999999995 7899999999999
Q ss_pred CHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHH
Q psy14237 82 DWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQE 154 (360)
Q Consensus 82 s~a~nfl~ml~g~-------~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~ 154 (360)
||++|||+|++|. ++.++++||++|||||||| +|+||||+||++||++|+|+||+|||++|+||+||||||+
T Consensus 195 s~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~-~n~STfa~RvvaSt~adlysav~agi~aL~GplHGGA~e~ 273 (419)
T PRK05614 195 SYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHE-QNASTSTVRLAGSSGANPFACIAAGIAALWGPAHGGANEA 273 (419)
T ss_pred CHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCC-CCcchHHHhhhhccCCCHHHHHHHHHhhcCCCcccChHHH
Confidence 9999999999863 6778999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHh--CCCcccccCCCCCCCCCCcHHHHHHHHHhh---CC-CChHHHHHHHHH
Q psy14237 155 VLIWLKKLQQQVGDNVSEEKLKEFIWNTLK--SGQVVPGYGHAVLRKTDPRYTCQREFAQKH---LP-DDSLFKLVSQVY 228 (360)
Q Consensus 155 v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~--~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~---~~-~~~~~~~a~~le 228 (360)
|++||+++ + +++++++||++.++ +|++||||||||||+.|||+++|+++++++ .+ .++++++++++|
T Consensus 274 v~~~l~~i----~---~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk~~DPRa~~l~~~a~~l~~~~~~~~~~~~ia~~ie 346 (419)
T PRK05614 274 VLKMLEEI----G---SVDNIPEFIARAKDKNDGFRLMGFGHRVYKNYDPRAKIMRETCHEVLKELGLNDPLLEVAMELE 346 (419)
T ss_pred HHHHHHHh----C---CchhHHHHHHHHHhccCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999876 4 46899999999976 455999999999999999999999999864 33 688999999999
Q ss_pred HhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHc-CCCcccCccccchh
Q psy14237 229 KVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRAL-GLPIERPKSLSTND 303 (360)
Q Consensus 229 ~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~-~~~i~RP~~~y~g~ 303 (360)
+++.+ +++++.|+++||||||+|++++.|||| .++||++|++||++||+||++||+.. +++|+||++.|+|+
T Consensus 347 ~~~~~--~~~~~~r~l~pNvD~~s~~l~~~lG~p-~~~~t~lFa~~R~~Gw~AH~~Eq~~~~~~~iiRPr~~Y~G~ 419 (419)
T PRK05614 347 EIALN--DEYFIERKLYPNVDFYSGIILKALGIP-TSMFTVIFALARTVGWIAHWNEMHSDPEQKIGRPRQLYTGY 419 (419)
T ss_pred HHHhh--hhhhccCCCCcChHHHHHHHHHHcCcC-hhhhcchHHhHhHHHHHHHHHHHHhccCCcccCCCccccCC
Confidence 97654 567788999999999999999999998 59999999999999999999999986 45899999999985
No 20
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=5.8e-79 Score=604.70 Aligned_cols=276 Identities=24% Similarity=0.382 Sum_probs=248.2
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
+++||+++|||++||++||+|+++|+... .+..+++++||||++|+|+|++||++ +.+.++.++++++
T Consensus 78 i~~~p~~~hpm~~L~~~vs~l~~~d~~~~-----------~~~~~~~a~rlia~~p~i~a~~~r~~-~~~~~~~p~~~~~ 145 (363)
T cd06108 78 LELIPKDSHPMDVMRTGCSMLGCLEPENE-----------FSQQYEIAIRLLAIFPSILLYWYHYS-HSGKRIETETDED 145 (363)
T ss_pred HHhCCCCCChHHHHHHHHHhhhhcCCccc-----------cHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccCCCCCCC
Confidence 67899999999999999999998765321 14456899999999999999999963 3344444557889
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
||++|||+||+|+ ++.++++||++|||||||| +||||||+|+++||++|+|+||+|||++|+||+||||||+|++||
T Consensus 146 s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~-~n~St~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e~v~~~l 224 (363)
T cd06108 146 SIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHE-FNASTFAARVTASTLSDFYSAITGAIGTLRGPLHGGANEAAMELI 224 (363)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCC-CcchHHHHHHHhccCCCHHHHHHHHHHhccCCcccchHHHHHHHH
Confidence 9999999999986 8899999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhHH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVLI 236 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~~ 236 (360)
+++ + +.+++++||++.+++|++||||||||||+.|||+++|+++++++. ++++++++++++|+++.+
T Consensus 225 ~~i----~---~~~~~~~~v~~~l~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~~~~--- 294 (363)
T cd06108 225 ERF----K---SPEEAEQGLLEKLERKELIMGFGHRVYKEGDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEVMWE--- 294 (363)
T ss_pred HHh----C---CHHHHHHHHHHHHhcCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---
Confidence 876 3 468899999999999999999999999999999999999998753 568999999999998743
Q ss_pred hhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHH
Q psy14237 237 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 306 (360)
Q Consensus 237 ~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~ 306 (360)
.|+++||||||+|+|++.|||| .++||++|++||++||+||++||+.++ +++||++.|+|+..+
T Consensus 295 ----~~~l~pNvD~~sa~l~~~lG~p-~~~~t~iF~i~R~~Gw~AH~~Eq~~~~-~~iRP~~~Y~G~~~~ 358 (363)
T cd06108 295 ----EKKLFPNLDFYSASAYHFCGIP-TELFTPIFVMSRVTGWAAHIMEQRANN-RLIRPSADYIGPEPR 358 (363)
T ss_pred ----hcCCCcChHHHHHHHHHHcCCC-hhhhhhHHHHHHHHHHHHHHHHHHhcC-CCcCccceecCCCCC
Confidence 3899999999999999999998 599999999999999999999999875 888999999997543
No 21
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=9.7e-79 Score=604.80 Aligned_cols=278 Identities=29% Similarity=0.423 Sum_probs=253.6
Q ss_pred cCCCCC-CCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 2 LNNFPN-HLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 2 i~~lP~-~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+++||+ ++|||++|+++||+|+.+|++... ...+..++++++|+|++|+|+|++||+ ++|+++++|+++
T Consensus 80 l~~~p~~~~hpm~~l~~~vs~l~~~~~~~~~--------~~~~~~~~~a~~liA~~p~i~a~~~r~--~~g~~~~~p~~~ 149 (372)
T PRK14034 80 LKQYDLKKVHPMSVLRTAISMLGLYDEEAEI--------MDEEANYRKAVRLQAKVPTIVAAFSRI--RKGLDPVEPRKD 149 (372)
T ss_pred HHhCCCcCcCHHHHHHHHHHhhcccCccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCC
Confidence 567997 599999999999999998764321 124677899999999999999999984 788889999999
Q ss_pred CCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHH
Q psy14237 81 KDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIW 158 (360)
Q Consensus 81 ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~ 158 (360)
+||++|||+||+|+ ++.++++||++|||||||| +||||||+|+++||++|+|+|++|||++|+||+||||||+|++|
T Consensus 150 ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg-~n~ST~aaRv~aSt~~d~ysav~agi~al~GplHGGA~e~~~~~ 228 (372)
T PRK14034 150 LSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHE-LNASTFTARVCVATLSDVYSGITAAIGALKGPLHGGANENVMKM 228 (372)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CCccHHHHHHHhccCCcHHHHHHHHhcccCCCccCCHHHHHHHH
Confidence 99999999999986 7889999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhH
Q psy14237 159 LKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVL 235 (360)
Q Consensus 159 l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~ 235 (360)
|+++ + +.+++++||++.+++|++||||||||||+.|||+++|+++++++. +.++++++++++|+++.+
T Consensus 229 l~~i----~---~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~~~~~-- 299 (372)
T PRK14034 229 LTEI----G---EEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEEIVTK-- 299 (372)
T ss_pred HHHh----C---CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--
Confidence 9876 4 468999999999999999999999999999999999999998874 567999999999987743
Q ss_pred HhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHH
Q psy14237 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 306 (360)
Q Consensus 236 ~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~ 306 (360)
.|+++||||||+|+++++|||| .++||++|++||++||+||++||+.+ ++|+||++.|+|+..+
T Consensus 300 -----~k~l~pNvD~~~a~l~~~lG~p-~~~~t~lf~i~R~~Gw~AH~~Eq~~~-~~l~Rp~~~Y~G~~~~ 363 (372)
T PRK14034 300 -----EKGLPPNVDFYSASVYHCLGID-HDLFTPIFAISRMSGWLAHILEQYEN-NRLIRPRADYVGPTHQ 363 (372)
T ss_pred -----cCCCCCChHHHHHHHHHHcCCC-hHhccchhHHHhHHHHHHHHHHHHhc-CCccCCCceecCCCCC
Confidence 4789999999999999999998 49999999999999999999999987 4899999999997543
No 22
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=3.8e-78 Score=606.77 Aligned_cols=291 Identities=29% Similarity=0.416 Sum_probs=258.5
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHH--hcCCC--CCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNT--FQGGK--GIGAI 77 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~--~~~G~--~~~~p 77 (360)
++++| +.|||++|+++|++|+.+|+.. +..+|+..+++++||||++|+|+|++||++ +++|+ ++++|
T Consensus 100 i~~~p-~~hpM~~L~a~v~~l~~~~~~~--------~~~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~~~~~~~~~p 170 (406)
T cd06113 100 ILKAP-SKDIMNKLQRSVLALYSYDDKP--------DDISLENVLRQSIQLIARLPTIAVYAYQAKRHYYDGESLYIHHP 170 (406)
T ss_pred HHhCC-CcCHHHHHHHHHHhccccCCCc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCC
Confidence 57788 4999999999999999876531 123588899999999999999999999942 23455 36689
Q ss_pred CCCCCHHHHHHHHhCC-C--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHH
Q psy14237 78 DTNKDWSANFTSMLGF-D--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQE 154 (360)
Q Consensus 78 ~~~ls~a~nfl~ml~g-~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~ 154 (360)
++++||++||++||+| + ++.++++||++||||||||++|+||||+||++||++|+|+||+|||++|+||+||||||+
T Consensus 171 ~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~ad~~~avaagi~al~GplHGGA~e~ 250 (406)
T cd06113 171 QPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPRHGGANIK 250 (406)
T ss_pred CCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccCCCHHHHHHHHHHHccCccccChHHH
Confidence 9999999999999997 3 788899999999999999867999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhCC-----CcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHH
Q psy14237 155 VLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSG-----QVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQ 226 (360)
Q Consensus 155 v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g-----~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~ 226 (360)
|++||+++.+..++..+++++++||++.++++ ++||||||||||+.|||+++|+++++++. +.+++++++++
T Consensus 251 v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ 330 (406)
T cd06113 251 VMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTLSDPRAVVLKKYARSLAKEKGREEEFALYER 330 (406)
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCCCCccHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 99999999765555456789999999999876 59999999999999999999999998763 45679999999
Q ss_pred HHHhcchhHHh-hCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccch
Q psy14237 227 VYKVVPPVLIE-TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTN 302 (360)
Q Consensus 227 le~~~~~~~~~-~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g 302 (360)
+|+++.+.+.+ +++.|+++||||||+|+|++.|||| .++||++|++||++||+||++||..++++|+||++.|+|
T Consensus 331 ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~~~lG~p-~~~~t~lF~isR~~Gw~AH~~Eq~~~~~~l~RP~~~Y~G 406 (406)
T cd06113 331 IERLAPEVIAEERGIGKTVCANVDFYSGFVYKMLGIP-QELYTPLFAVARIVGWCAHRIEELLNSGRIIRPAYKYVG 406 (406)
T ss_pred HHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHcCCC-hhhhhhHHHHHhHHHHHHHHHHHHhcCCceeccccccCC
Confidence 99988766554 4788999999999999999999998 599999999999999999999998776799999999997
No 23
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=1.9e-78 Score=603.93 Aligned_cols=280 Identities=24% Similarity=0.350 Sum_probs=251.5
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
|++||+++|||++||++||+|+++|+.. + . .+..+++++||||++|+|+|++||+ ++|++++.|++++
T Consensus 83 ~~~~p~~~hpm~~l~~~vs~l~~~~~~~--~-------~-~~~~~~~a~~liA~~p~i~a~~yr~--~~g~~~~~p~~~~ 150 (377)
T PRK14037 83 IYLMPRDSDAIGLMEAAFAALASIDKNF--K-------W-KENDKEKAISIIAKMATIVANVYRR--KEGNKPRIPEPSD 150 (377)
T ss_pred HHhCCccCCcHHHHHHHHHhhhccCCcc--c-------c-cHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCCCC
Confidence 6789999999999999999999875421 0 1 2445789999999999999999995 7899999999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
||++|||+||+|+ ++.++++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||||+|++||
T Consensus 151 s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg-~naST~aarv~aSt~ad~ysav~agi~al~GplHGGA~e~v~~~l 229 (377)
T PRK14037 151 SFAESFLLASFAREPTAEEIKAMDAALILYTDHE-VPASTTAALVAASTLSDMYSCITAALAALKGPLHGGAAEEAFKQF 229 (377)
T ss_pred CHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccC-CchHhHHHHHhhccCCCHHHHHHHHHHhccCcccCChHHHHHHHH
Confidence 9999999999885 8899999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHH-hCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---C-CChHHHHHHHHHHhcchh
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTL-KSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---P-DDSLFKLVSQVYKVVPPV 234 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l-~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~-~~~~~~~a~~le~~~~~~ 234 (360)
+++ + +++++++|+++.+ ++|++||||||||||+.|||+++|+++++++. + .+++++++.++|+++.+
T Consensus 230 ~ei----~---~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~~e~~~~~- 301 (377)
T PRK14037 230 VEI----G---DPNNVEMWFNDKIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIERNSEAKKYFEIAQKLEELGIK- 301 (377)
T ss_pred HHh----c---ChhhHHHHHHHHHhcCCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-
Confidence 876 4 4689999998765 45589999999999999999999999998863 3 37899999999987743
Q ss_pred HHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHH
Q psy14237 235 LIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVK 306 (360)
Q Consensus 235 ~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~ 306 (360)
+++.|+++||||||+|++++.|||| .++||++|++||++||+||++||..++++|+||++.|+|+..+
T Consensus 302 ---~~~~k~l~pNvD~~sa~l~~~lG~p-~~~~t~lf~isR~~Gw~AH~~Eq~~~~~~~~RP~~~Y~G~~~~ 369 (377)
T PRK14037 302 ---QFGSKGIYPNTDFYSGIVFYALGFP-VYMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEHR 369 (377)
T ss_pred ---HhhccCCCCChHHHHHHHHHHcCCC-hhhcchhHHhhhhhHHHHHHHHHHhcCCccccCcceecCCCCC
Confidence 4456899999999999999999998 5999999999999999999999998766999999999997544
No 24
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=2.4e-77 Score=599.97 Aligned_cols=281 Identities=31% Similarity=0.437 Sum_probs=253.1
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
|+++|++.|||++|+++||+++.+|+.. .++ ..++...+++++|||++|+|+|++||+ +.|++++.|++++
T Consensus 106 i~~~p~~~~pm~~l~~~vs~l~~~d~~~------~~~-~~~~~~~~~a~~lia~~p~i~a~~~r~--~~g~~~~~p~~~l 176 (400)
T cd06114 106 FNGFPRDAHPMAILSAMVNALSAFYPDS------LDV-NDPEQRELAAIRLIAKVPTIAAMAYRY--SIGQPFIYPDNDL 176 (400)
T ss_pred HHhcccCCCHHHHHHHHHHHHhhcCccc------ccc-CCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCCCc
Confidence 5789999999999999999999876532 121 237778899999999999999999995 6898899999999
Q ss_pred CHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHH
Q psy14237 82 DWSANFTSMLGFD-------NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQE 154 (360)
Q Consensus 82 s~a~nfl~ml~g~-------~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~ 154 (360)
||++|||+|++|+ ++.++++||++|||||||| +|+||||+||++||++|+|+||+|||++|+||+||||+|+
T Consensus 177 s~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~-~n~STfaaRv~aSt~adl~sav~agl~al~GplHGGA~~~ 255 (400)
T cd06114 177 SYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHE-QNASTSTVRMVGSSGANLFASISAGIAALWGPLHGGANEA 255 (400)
T ss_pred CHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCC-CcchHHHHHHHhccCCcHHHHHHHHHHhccCCcccChHHH
Confidence 9999999999864 6889999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHHHHHhCC--CcccccCCCCCCCCCCcHHHHHHHHHhh---C-CCChHHHHHHHHH
Q psy14237 155 VLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSG--QVVPGYGHAVLRKTDPRYTCQREFAQKH---L-PDDSLFKLVSQVY 228 (360)
Q Consensus 155 v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g--~~IpGFGHrvYk~~DPRa~~L~~~a~~~---~-~~~~~~~~a~~le 228 (360)
|++||+++ + +.+++++||++.+++| ++||||||||||..|||+++|+++++++ . ..++++++++++|
T Consensus 256 v~~~l~~i----~---~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~~ie 328 (400)
T cd06114 256 VLEMLEEI----G---SVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEVLAELGKDDPLLEIAMELE 328 (400)
T ss_pred HHHHHHHh----c---CcccHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999876 3 3588999999999987 5999999999999999999999998775 2 3478999999999
Q ss_pred HhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcC-CCcccCccccch
Q psy14237 229 KVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALG-LPIERPKSLSTN 302 (360)
Q Consensus 229 ~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~-~~i~RP~~~y~g 302 (360)
+++.+ .++++.|+++||||||+|++++.|||| .++||++|++||++||+||++||+.++ ++|+||++.|+|
T Consensus 329 ~~~~~--~~~~~~~~l~pNvD~~~a~l~~~lG~p-~~~~~~lFa~sR~~Gw~AH~~Eq~~~~~~~liRP~~~YvG 400 (400)
T cd06114 329 EIALK--DDYFIERKLYPNVDFYSGIILRALGIP-TEMFTVLFALGRTPGWIAQWREMHEDPELKIGRPRQLYTG 400 (400)
T ss_pred HHHHH--hhhhcccCCCCChHHHHHHHHHHcCCC-hHhhhhhHHHHhHHHHHHHHHHHHhCCCCceeCcccccCC
Confidence 97654 446677999999999999999999998 599999999999999999999999973 689999999997
No 25
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=1e-76 Score=589.02 Aligned_cols=277 Identities=23% Similarity=0.355 Sum_probs=253.7
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
++.||+++|||++|+++||+++.+|++.. +.+++...+++++|+|++|+|+|++||+ +.|+++++|++++
T Consensus 78 ~~~~p~~~~pm~~l~~~vs~l~~~d~~~~--------~~~~~~~~~~a~~lia~~~~i~a~~~~~--~~g~~~~~p~~~l 147 (362)
T cd06111 78 IASLPKNCHPMDVLRTAVSVLGAEDSETD--------DSSPDANLAKAIRLLAQLPTVVAADIRR--RKGLDPIPPDSDL 147 (362)
T ss_pred HHhCCCCCChHHHHHHHHHHhhccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCcCCCCCc
Confidence 56799999999999999999999886431 1247888899999999999999999985 7899999999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
+|++||++|++|. +++++++||++|||||||| +||||||+|+++||++|+|+||+|||++|+||+||||+|+|++||
T Consensus 148 s~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~~~~~l 226 (362)
T cd06111 148 GIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHS-FNASTFTARVITSTLSDIYSAITGAIGALKGPLHGGANEAVMHMM 226 (362)
T ss_pred CHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccC-CchhHHHHHHHHccCCCHHHHHHHHHhhccCccccchHHHHHHHH
Confidence 9999999999886 8889999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhHH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVLI 236 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~~ 236 (360)
+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++++++.+
T Consensus 227 ~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~--- 296 (362)
T cd06111 227 LEI----D---DPEKAAQWMLDALARKEKVMGFGHRVYKSGDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAMVA--- 296 (362)
T ss_pred HHh----C---ChhhHHHHHHHHHhcCCceecCCCCCCCCCCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHH---
Confidence 876 4 468899999999999999999999999999999999999987653 356899999999987743
Q ss_pred hhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHH
Q psy14237 237 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLV 305 (360)
Q Consensus 237 ~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~ 305 (360)
.|+++||||||+|++++.|||| .+++|++|++||++||+||++||+.++ +|+||++.|+|+..
T Consensus 297 ----~~~l~pNvD~~~a~l~~~lG~p-~~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~ 359 (362)
T cd06111 297 ----AKGIKPNLDFPAGPAYYLMGFD-IDFFTPIFVMARITGWTAHIMEQRADN-ALIRPLSEYNGPEQ 359 (362)
T ss_pred ----hcCCCCChHHHHHHHHHHcCcC-hhhhhhHHHHHHHHHHHHHHHHHHHcC-CcccCCceeeCCCC
Confidence 3789999999999999999998 499999999999999999999999975 89999999999764
No 26
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=1.3e-76 Score=585.15 Aligned_cols=245 Identities=21% Similarity=0.298 Sum_probs=229.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcCC-CCCCCCCCCCCHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcCCCCCCcchh
Q psy14237 47 EDSMDLIAKLPVVAATIYRNTFQGG-KGIGAIDTNKDWSANFTSMLGFD-----NHQFTELMRLYLTIHSDHEGGNVSAH 120 (360)
Q Consensus 47 ~~a~rLiAk~p~i~A~~yr~~~~~G-~~~~~p~~~ls~a~nfl~ml~g~-----~~~~~~~ld~~LIL~ADHe~~n~STf 120 (360)
++++||+||+|+|+|++||+ ++| +++++|++++||++|||+||+|. ++.++++||++|||||||| +|+|||
T Consensus 99 ~~~~rliA~~pti~a~~~r~--~~g~~~~i~p~~~ls~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg-~naSTf 175 (353)
T PRK12350 99 TARLDLARASVMALSAVAQS--ARGIGQPAVPQREIDHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHG-MNASTF 175 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HcCCCCCcCCCCCCCHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCC-CCcchH
Confidence 56799999999999999995 688 78899999999999999999875 7889999999999999998 899999
Q ss_pred hhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCC
Q psy14237 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKT 200 (360)
Q Consensus 121 aaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~ 200 (360)
|+|+++||++|+|+||+|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.
T Consensus 176 aaRv~aSt~adlysav~agi~aL~GplHGGA~e~v~~ml~ei----~---~~~~~~~~v~~~l~~~~ri~GFGHrvYk~~ 248 (353)
T PRK12350 176 TARVIASTGADVAAALSGAIGALSGPLHGGAPARVLPMLDAV----E---RTGDARGWVKGALDRGERLMGFGHRVYRAE 248 (353)
T ss_pred HHHHHhccCCcHHHHHHHHHhhcCCCcccChHHHHHHHHHHh----C---ChhhHHHHHHHHHHCCCccccCCCCCCCCC
Confidence 999999999999999999999999999999999999999876 4 468999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHH
Q psy14237 201 DPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVL 280 (360)
Q Consensus 201 DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~ 280 (360)
|||+++|+++++++. ++++++++++|+++.+.+++++..|+|+||||||+|++++.|||| .++||++|++||++||+
T Consensus 249 DPRa~~L~~~~~~l~--~~~~~ia~~le~~~~~~~~~~~~~r~l~pNVDfysa~v~~~lGip-~~~ft~lFai~R~~Gw~ 325 (353)
T PRK12350 249 DPRARVLRATAKRLG--APRYEVAEAVEQAALAELRERRPDRPLETNVEFWAAVLLDFAGVP-AHMFTAMFTCGRTAGWS 325 (353)
T ss_pred CCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHHcCcC-hhhhcchHHhhhHHHHH
Confidence 999999999999875 689999999999998766677778999999999999999999998 59999999999999999
Q ss_pred HhHHHHHHcCCCcccCccccchhHH
Q psy14237 281 ASLIWDRALGLPIERPKSLSTNDLV 305 (360)
Q Consensus 281 AH~~Eq~~~~~~i~RP~~~y~g~~~ 305 (360)
||++||+.++ +|+||++.|+|+..
T Consensus 326 AH~~Eq~~~~-~i~RP~~~Y~G~~~ 349 (353)
T PRK12350 326 AHILEQKRTG-RLVRPSARYVGPAP 349 (353)
T ss_pred HHHHHHHhcC-CCcCCCcceeCCCC
Confidence 9999999875 89999999999764
No 27
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=9e-76 Score=583.65 Aligned_cols=277 Identities=26% Similarity=0.354 Sum_probs=251.0
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
++.||++.|||++|+++||+++.+|++..+ ..++...+++++|||++|+|+|++||+ +.|++++.|++++
T Consensus 84 l~~~p~~~~pm~~l~~~vs~l~~~d~~~~~--------~~~~~~~~~a~~lia~~p~i~a~~~r~--~~g~~~~~p~~~l 153 (369)
T PRK12349 84 LKALPKETHPMDGLRTGVSALAGYDNDIED--------RSLEVNKSRAYKLLSKVPNIVANSYHI--LNNEEPIEPLKEL 153 (369)
T ss_pred HHhCCCCCCHHHHHHHHHHHhcccCccccc--------cCcHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCCCcCC
Confidence 678999999999999999999998864321 135667889999999999999999994 6889999999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
+|++|||+||+|. ++.++++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||+|+|++||
T Consensus 154 ~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~-lnaStfa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e~~~~~l 232 (369)
T PRK12349 154 SYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHE-MPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGANEAVMYML 232 (369)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcC-ccHHHHHHHHHHccCccHHHHHHHHHHhccCccccChHHHHHHHH
Confidence 9999999999886 8889999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCC-CCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVL-RKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVL 235 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvY-k~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~ 235 (360)
+++ + +++++++||++.+++|++||||||||| +..|||+++|+++++++. +..+++++++++|+++.+
T Consensus 233 ~~i----~---~~~~~~~~v~~~l~~~~~i~GFGH~vy~~~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~-- 303 (369)
T PRK12349 233 LEA----G---TVEKFEELLQKKLYNKEKIMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEKIMEK-- 303 (369)
T ss_pred HHc----C---CHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH--
Confidence 876 4 568999999999999999999999999 668999999999987753 345788999888887743
Q ss_pred HhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHH
Q psy14237 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLV 305 (360)
Q Consensus 236 ~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~ 305 (360)
.|+++||||||+|++++.||||+ ++||++|++||++||+||++||+.++ +++||++.|+|+..
T Consensus 304 -----~~gl~pNvD~~~a~l~~~lG~p~-~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~l~RP~~~Y~G~~~ 366 (369)
T PRK12349 304 -----EKGLYPNLDYYAAPVYWMLGIPI-QLYTPIFFSSRTVGLCAHVIEQHANN-RLFRPRVNYIGERH 366 (369)
T ss_pred -----hcCCCCCcHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHhcC-CCccccceeeCCCc
Confidence 47899999999999999999984 99999999999999999999999975 89999999999763
No 28
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=1.3e-75 Score=583.44 Aligned_cols=279 Identities=24% Similarity=0.354 Sum_probs=254.9
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
++.||++.|||++|+++||+++.+|++.. +.+++...+++++|+|++|+|+|++||+ +.|+++++|++++
T Consensus 88 ~~~~p~~~~pm~~l~~~vs~l~~~d~~~~--------~~~~~~~~~~a~~lia~~~~i~a~~~~~--~~g~~~~~p~~~~ 157 (375)
T PRK14033 88 IDKLPTTCHPMDVVRTAVSYLGAEDPEAD--------DSSPEANLAKALRLFAVLPTIVAADQRR--RRGLDPIAPRSDL 157 (375)
T ss_pred HHhCCCCCCHHHHHHHHHHHhccCCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCccCCCCCC
Confidence 56799999999999999999999886431 1246788899999999999999999995 7899999999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
+|++|||+|++|. ++.++++||++|||||||| +||||||+|+++||++|+|+||+|||++|+||+||||+|+|++||
T Consensus 158 s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg-ln~StfaaRv~aSt~adl~~av~agl~al~GplHGGA~e~~~~~l 236 (375)
T PRK14033 158 GYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHS-FNASTFTARVITSTLSDIYSAVTGAIGALKGPLHGGANEAVMHTM 236 (375)
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCCHHHHHHHHHhhccCccccChHHHHHHHH
Confidence 9999999999886 7889999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhHH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVLI 236 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~~ 236 (360)
+++ + +++++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++++++.+
T Consensus 237 ~ei----~---~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~--- 306 (375)
T PRK14033 237 LEI----G---DPARAAEWLRDALARKEKVMGFGHRVYKHGDSRVPTMKAALRRVAAVRDGQRWLDIYEALEKAMAE--- 306 (375)
T ss_pred HHh----C---ChhHHHHHHHHHHhCCCceecCCCCCCCCCCchHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH---
Confidence 876 4 568999999999999999999999999999999999999987763 457899999999998754
Q ss_pred hhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHH
Q psy14237 237 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 307 (360)
Q Consensus 237 ~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~ 307 (360)
.++++||||||+|+|++.||||+ ++||++|++||++||+||++||+.++ +|+||++.|+|+..+.
T Consensus 307 ----~~gl~pNvD~~~a~l~~~lGip~-~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~RP~~~YvG~~~~~ 371 (375)
T PRK14033 307 ----ATGIKPNLDFPAGPAYYLMGFDI-DFFTPIFVMSRITGWTAHIMEQRASN-ALIRPLSEYNGPEQRE 371 (375)
T ss_pred ----HhCCCCCcHHHHHHHHHHcCcCc-hhhhHHHHHHHHHHHHHHHHHHHhcC-CccccCceecCCCCCC
Confidence 37899999999999999999984 99999999999999999999999976 8999999999986543
No 29
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=4.3e-75 Score=578.84 Aligned_cols=280 Identities=29% Similarity=0.440 Sum_probs=255.4
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
++.||++.|||++|++++++++.+|+... ...++...+++++|+|++|+|+|++||+ +.|++++.|++++
T Consensus 78 ~~~~p~~~~pm~~l~~~ls~l~~~d~~~~--------~~~~~~~~~~a~~lia~~p~i~a~~~~~--~~g~~~~~p~~~~ 147 (368)
T TIGR01800 78 IEALPAESHPMDALRTAVSYLGALDPEAF--------GHTPEEARDIAIRLIAKLPTIVAYWYRI--RNGLEIVAPKEDD 147 (368)
T ss_pred HHhCCCCCCcHHHHHHHHHHhhccCcccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCcCCCCCc
Confidence 56799999999999999999999876421 1135678899999999999999999995 6799999999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
+|++|||+|++|+ ++..+++||++|||||||| +|+||||+|+++||++|+|+||+|||++|+||+||||+|.|++||
T Consensus 148 ~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg-~n~St~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~~~~~l 226 (368)
T TIGR01800 148 SHAANFLYMLHGEEPSKEEEKAMDIALILYAEHE-FNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANEAVMAML 226 (368)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCC-CchHHHHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHHHHHHH
Confidence 9999999999986 8889999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhHH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVLI 236 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~~ 236 (360)
+++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. +.++++++++++++++.+
T Consensus 227 ~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 296 (368)
T TIGR01800 227 DEI----G---DPDKAEAWIRKALENKERIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVMEK--- 296 (368)
T ss_pred HHh----c---ChHHHHHHHHHHHHCCCccCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH---
Confidence 876 3 467899999999999999999999999999999999999998863 467899999999998754
Q ss_pred hhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHHh
Q psy14237 237 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQY 308 (360)
Q Consensus 237 ~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~~ 308 (360)
.|+++||||||+|++++.|||| .++||++|++||++||+||++||++++ +|+||++.|+|+..+.+
T Consensus 297 ----~~~l~pNvD~~~a~l~~~lg~p-~~~~~~lf~~~R~~Gw~AH~~Eq~~~~-~l~Rp~~~Y~G~~~~~~ 362 (368)
T TIGR01800 297 ----EKGIYPNVDFYSGSVYYSMGIP-TDLFTPIFAMSRVSGWTAHIIEQVENN-RLIRPRADYVGPEERKY 362 (368)
T ss_pred ----hcCCCCChHHHHHHHHHHcCcC-HHHhhhHHHHHHHHHHHHHHHHHHhcC-CccCccccccCCCCCCC
Confidence 3789999999999999999998 489999999999999999999999875 89999999999865543
No 30
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=2.5e-74 Score=571.32 Aligned_cols=274 Identities=28% Similarity=0.412 Sum_probs=251.8
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
++.||++.|||++|++++++++.+|+... +.+|+...+++++|+|++|+|+|++|++ +.|.+++.|++++
T Consensus 78 ~~~~p~~~~pm~~l~~~v~~l~~~~~~~~--------~~~~~~~~~~a~~lla~~p~i~a~~~~~--~~~~~~~~p~~~~ 147 (356)
T cd06110 78 LKLLPKDAHPMDVLRTAVSALALYDPEAD--------DMSREANLRKAIRLIAKMPTIVAAFHRI--RNGLEPVAPDPDL 147 (356)
T ss_pred HHhCCCCCCchHHHHHHHHhhhhcCCCcc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCCCCCC
Confidence 56799999999999999999998765321 1247888899999999999999999984 6888888999999
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
+|++||++|++|+ ++.++++||++|||||||| +|+|||++|+++||++|+|+||+|||++|+||+||||++.|++||
T Consensus 148 ~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg-~n~Stfa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~~~~~l 226 (356)
T cd06110 148 SHAANFLYMLTGEKPSEEAARAFDVALILHADHE-LNASTFAARVVASTLSDMYSAVTAAIGALKGPLHGGANERVMKML 226 (356)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHHHHHHH
Confidence 9999999999886 8889999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchhHH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPVLI 236 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~~~ 236 (360)
+++ + +.+++++||++.+++|++||||||||||..|||+++|+++++++. ++++++++++++|+++.+
T Consensus 227 ~~~----~---~~~~~~~~v~~~~~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~~~--- 296 (356)
T cd06110 227 LEI----G---SVDNVAAYVKDKLANKEKIMGFGHRVYKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAMRD--- 296 (356)
T ss_pred HHh----C---CHHHHHHHHHHHHhcCCeecCCCCccCCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---
Confidence 876 3 468899999999999999999999999999999999999998873 467899999999998754
Q ss_pred hhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccch
Q psy14237 237 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTN 302 (360)
Q Consensus 237 ~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g 302 (360)
.|+++||||||+|++++.|||| .++||++|++||++||+||++||+++ ++|+||++.|+|
T Consensus 297 ----~~~l~pNvd~~~a~l~~~lg~p-~~~~~~lf~i~R~~Gw~AH~~Eq~~~-~~iiRP~~~Y~G 356 (356)
T cd06110 297 ----EKGLNPNVDFYSASVYYMLGIP-VDLFTPIFAISRVSGWCAHILEQYFN-NRLIRPRAEYVG 356 (356)
T ss_pred ----ccCCCcChHHHHHHHHHHcCcC-hhhhhHHHHHHHHHHHHHHHHHHHHc-CCccCCccccCC
Confidence 3789999999999999999998 59999999999999999999999997 489999999997
No 31
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=4.4e-74 Score=569.97 Aligned_cols=276 Identities=39% Similarity=0.584 Sum_probs=253.6
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
++.+|++.|||++|+++|++++.+|++.. +.+++...+++++||+++|+|++++|++ +.|++++.|++++
T Consensus 78 ~~~~p~~~~pm~~l~~~~~~l~~~~~~~~--------~~~~~~~~~~a~~lia~~~~i~a~~~~~--~~g~~~~~p~~~~ 147 (358)
T cd06118 78 LDLLPKNAHPMDVLRTAVSALGSFDPFAR--------DKSPEARYEKAIRLIAKLPTIAANIYRN--REGLEIIAPDPDL 147 (358)
T ss_pred HHhcCCCCChHHHHHHHHHhhhccCCccc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCCCCcc
Confidence 56799999999999999999999876432 1347888899999999999999999995 7899999999999
Q ss_pred CHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGF--DNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g--~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
||++||++|++| +++.++++||++|||||||| +|+|||++|+++||++|+|+||+|||++|+||+||||+++|++||
T Consensus 148 ~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~-~n~Stfa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~~~~~l 226 (358)
T cd06118 148 SYAENFLYMLFGEEPDPEEAKAMDLALILHADHE-GNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEAVLKML 226 (358)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CChHHHHHHHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHH
Confidence 999999999998 48999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCC---CChHHHHHHHHHHhcchhHH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP---DDSLFKLVSQVYKVVPPVLI 236 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~---~~~~~~~a~~le~~~~~~~~ 236 (360)
+++. +++++++||++.+++|++||||||||||+.|||+++|+++++++.. .++++++++++|+++.+..
T Consensus 227 ~~~~-------~~~~~~~~i~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~- 298 (358)
T cd06118 227 LEIG-------TPENVEAYIWKKLANKRRIMGFGHRVYKTYDPRAKILKELAEELAEEKGDDKLFEIAEELEEIALEVL- 298 (358)
T ss_pred HHhC-------CchHHHHHHHHHHhcCCeecCCCCCCCCCCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-
Confidence 8773 3588999999999999999999999999999999999999988743 5899999999999886532
Q ss_pred hhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCcccc
Q psy14237 237 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300 (360)
Q Consensus 237 ~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y 300 (360)
..|+++||||||+|++++.|||| .++||++|++||++||+||++||+.++.+|+||++.|
T Consensus 299 ---~~r~l~pNvd~~~~~l~~~lg~p-~~~~~~lf~i~R~~Gw~AH~~Eq~~~~~~iiRP~~~Y 358 (358)
T cd06118 299 ---GEKGIYPNVDFYSGVVYKALGFP-TELFTPLFAVSRAVGWLAHIIEYRENNQRLIRPRAEY 358 (358)
T ss_pred ---cCCCCCcChHHHHHHHHHHcCcC-HHHHhHHHHHHHHhHHHHHHHHHHhCCCCccCCcccC
Confidence 12799999999999999999999 5999999999999999999999999876899999998
No 32
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=3.2e-74 Score=570.56 Aligned_cols=273 Identities=32% Similarity=0.514 Sum_probs=231.3
Q ss_pred cCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy14237 2 LNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNK 81 (360)
Q Consensus 2 i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~l 81 (360)
+++||+++|||++|++++++|++++++ ..+..+|+..++++++|+|++|+|+|++|++ ++|+++++|++++
T Consensus 77 i~~lp~~~~pm~~L~~~vs~l~~~~~~-------~~~~~~~~~~~~~~~~liA~~p~i~a~~~~~--~~g~~~~~p~~~~ 147 (356)
T PF00285_consen 77 IEALPRDAHPMDVLRAAVSALSAFDPD-------PLYDNSPEDVLEDAIRLIAKIPTIVAAIYRH--RRGQPPIPPDPDL 147 (356)
T ss_dssp HHCSTTTS-HHHHHHHHHHHHHHHSTT-------GTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS------TTS
T ss_pred HhhcCCCCCchHHHHHHHhhhhhhhhc-------cccccchhHHHHHHHHHhhcchHHHHHHHHH--hCCCCccccccch
Confidence 578999999999999999999987764 0123458999999999999999999999996 6999999999999
Q ss_pred CHHHHHHHHh--CCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHH
Q psy14237 82 DWSANFTSML--GFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLI 157 (360)
Q Consensus 82 s~a~nfl~ml--~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~ 157 (360)
+|++||++|+ +|+ ++.++++||++|||||||| +|||||++|+++||++|+|+||+|||++++||+||||+|+|++
T Consensus 148 ~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~-~~~St~aaR~~aSt~~~~~~av~agl~al~G~~hgga~~~~~~ 226 (356)
T PF00285_consen 148 SYAENFLYMLGVTGREPDPEEARALDAALVLHADHG-LNPSTFAARVAASTGADLYSAVAAGLAALSGPLHGGANEAAMR 226 (356)
T ss_dssp SHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--S-SSHHHHHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHHHHHH
T ss_pred HHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCC-CCccchhhhhhhccCcchhHHHHhhhhhccCcccccccHHHHH
Confidence 9999999999 565 8999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhC---CCChHHHHHHHHHHhcchh
Q psy14237 158 WLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL---PDDSLFKLVSQVYKVVPPV 234 (360)
Q Consensus 158 ~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~---~~~~~~~~a~~le~~~~~~ 234 (360)
||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. ..++++++++++|+++.+.
T Consensus 227 ~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~ 299 (356)
T PF00285_consen 227 MLQEI----G---SPENVEEYVEERLAKGERIPGFGHRVYKNGDPRAEALLALARELGEEFPDGPLVELAEAIEEAAPED 299 (356)
T ss_dssp HHHHH----S---SGGGHHHHHHHHHHTTSTTTTBCESSSSS--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----H---hhHHHHHHHHHHHhccccccccCCCcCCCCCCChHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH
Confidence 99887 4 579999999999999999999999999999999999999999887 7899999999999999876
Q ss_pred HHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccC
Q psy14237 235 LIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERP 296 (360)
Q Consensus 235 ~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP 296 (360)
+.+ |+++||||||+|++++.||||+ +++|++|++||++||+||++||++.+++|+||
T Consensus 300 ~~~----~~l~pNvd~~~a~l~~~lG~p~-~~~~~if~~~R~~Gw~AH~~Eq~~~~~~i~RP 356 (356)
T PF00285_consen 300 FKE----RKLYPNVDFYSAALLRALGFPP-ELFTAIFALSRTAGWIAHILEQRQLNNKIIRP 356 (356)
T ss_dssp HHH----HTESB-THHHHHHHHHHTT--G-GGHHHHHHHHHHHHHHHHHHHHHHCT------
T ss_pred Hhh----ccccCchhhHHHHHHHHHhcch-hhchHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 543 6799999999999999999985 99999999999999999999999966699999
No 33
>KOG2617|consensus
Probab=100.00 E-value=2.5e-70 Score=535.34 Aligned_cols=310 Identities=68% Similarity=1.097 Sum_probs=296.5
Q ss_pred CcCCCCCCCChHHHHHHHHHHhCCCchhhhhhcCCCCcCCChhHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy14237 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTN 80 (360)
Q Consensus 1 ~i~~lP~~~hPM~~L~t~vsal~~~~~~~~~~~~~~~~~~~~~~~~~~a~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ 80 (360)
+|+++|+|.|||.++.+++++|..+++|+++|..+.+|.+||++.+|++++|||++|+|+|++|++.+++|... |+++
T Consensus 146 ~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay~~G~~k~~yw~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~~--~~~~ 223 (458)
T KOG2617|consen 146 MIDSMPKDLHPMAQLAAAVLALKIFSPFAKAYLRGIGKYKYWQYTYEDCLVLIAKLPTIAAAIYRNIYADGIPK--PDPN 223 (458)
T ss_pred HHHhCCcccchHHHHHHHHHhccccccchhhhhhccchhhcccccHHHHHHHHHhccHHHHHHHHHHhcCCCCC--CCcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999987777644 4999
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHHH
Q psy14237 81 KDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLK 160 (360)
Q Consensus 81 ls~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~ 160 (360)
+||++||++|++..++.++++||.++++|+|||+.|.|+++.++++|++ |+|.+++||+++|.||+||+|||+|++||.
T Consensus 224 ~dys~Nf~~mlg~~~~~f~~lmrly~~iHadHE~gnVsAh~~HLvGSal-dpyls~aa~~~GLaGPLHGlAnqEvl~~L~ 302 (458)
T KOG2617|consen 224 LDYSANFARMLGSRQPDFAQLMRLYVGIHADHEGGNVSAHTGHLVGSAL-DPYLSFAAGMNGLAGPLHGLANQEVLRFLG 302 (458)
T ss_pred cchhHhHHHHHccCChHHHHHHHHeeeeecccccCcHHHHhcccccccc-chhHHHHHhhcccccccccCchHHHHHHHH
Confidence 9999999999998899999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhCC
Q psy14237 161 KLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240 (360)
Q Consensus 161 ~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~ 240 (360)
.+.++||+..+++++++||++.+.+|+.||||||+|||+.|||..++++++.+.+++++++++...++++++.++.|+++
T Consensus 303 ~~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHavlr~tDPR~~~~~efA~k~~~~d~l~~l~~~l~~~~p~vl~e~gk 382 (458)
T KOG2617|consen 303 KLIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAVLRKTDPRYKVQREFALKHLPDDPLFLLVSALYKIAPGVLTEHGK 382 (458)
T ss_pred HhHHHhccccchhhhhHhhHHhhcccccccccccccccCCCchhhHHHHHHHhcCCCCcchhhhHHHHHhChHHHHHhcc
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccchhHHHHhhhhcC
Q psy14237 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKIKS 313 (360)
Q Consensus 241 ~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~~~~~~~ 313 (360)
.|+++||||+++|++++++|+++.-+||++|.+||++|.++|.+|.+..+.||+||.|.|++.+.+.++...+
T Consensus 383 ~knp~PNVD~~SGvll~~yGl~e~~fyTVLFgVsRa~Gvlsqliw~ralg~pieRPks~~t~~~~~~~~~~~~ 455 (458)
T KOG2617|consen 383 VKNPYPNVDAHSGVLLQYYGLPELFFYTVLFGVSRALGVLSQLIWDRALGLPIERPKSVSTDWLHRFTNMVRE 455 (458)
T ss_pred cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHHhhhHHHHHHHHHHHHhCCcccCccccchHHHHHHHHHhhc
Confidence 9999999999999999999998655559999999999999999999999999999999999999988776543
No 34
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=2.9e-63 Score=460.93 Aligned_cols=208 Identities=41% Similarity=0.642 Sum_probs=191.1
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHH
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWL 159 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l 159 (360)
||++||++|++|+ +++++|+||++||+||||| +|||||++|+++||++|+|+||+|||++++||+||||+++|++||
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg-~~~St~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a~~~l 79 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHE-GNASTFTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAVLKML 79 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CchhhHHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHHHHHH
Confidence 6999999999986 8999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCC---CChHHHHHHHHHHhcchhHH
Q psy14237 160 KKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP---DDSLFKLVSQVYKVVPPVLI 236 (360)
Q Consensus 160 ~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~---~~~~~~~a~~le~~~~~~~~ 236 (360)
+++.+. ..++++++|++.+++|++||||||||||+.|||+++|+++++++.. .++++++++++|+++.+..
T Consensus 80 ~e~~~~-----~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~- 153 (213)
T cd06099 80 EEIGTP-----KNEPAEAYIRKKLESKRVIMGFGHRVYKKYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVL- 153 (213)
T ss_pred HHhCCc-----ccccHHHHHHHHHhCCCcccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-
Confidence 887421 2367899999999999999999999999999999999999988743 3599999999999886532
Q ss_pred hhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCcccc
Q psy14237 237 ETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300 (360)
Q Consensus 237 ~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y 300 (360)
..|+++||||||+|+++++|||| .+++|++|++||++||+||++||+.++.+|+||++.|
T Consensus 154 ---~~r~l~~Nvd~~~a~l~~~lG~p-~~~~~~lf~~~R~~Gw~AH~~Eq~~~~~~l~RP~~~Y 213 (213)
T cd06099 154 ---YEKKLYPNVDFYSGVLYKAMGFP-TELFTPLFAVARAVGWLAHLIEQLEDNFKIIRPRSEY 213 (213)
T ss_pred ---hccCCCCChHHHHHHHHHHcCcC-HHhhhHHHHHHHHHHHHHHHHHHHhCCCCccCCcccC
Confidence 23899999999999999999999 5999999999999999999999999876899999988
No 35
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=4.1e-63 Score=473.54 Aligned_cols=230 Identities=40% Similarity=0.608 Sum_probs=201.5
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhc
Q psy14237 50 MDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGS 127 (360)
Q Consensus 50 ~rLiAk~p~i~A~~yr~~~~~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaS 127 (360)
..|+.+. +..-.+|-. -.|+-+ +|++|||+|+++. ++.++++||++|||||||| +||||||+|+++|
T Consensus 31 ~dL~~~~-~f~ev~~LL--~~G~lP-------~~~~nfl~m~~g~~p~~~~~~~l~~~Lvl~aDHg-~naST~aaRv~aS 99 (265)
T cd06101 31 EELAENS-SFEEVAYLL--LTGELP-------SYAENFLYMLGGEEPDPEFAKAMDLALILHADHE-GNASTFTARVVGS 99 (265)
T ss_pred HHHHhcC-CHHHHHHHH--HcCCCC-------cHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCC-CchHHHHHHHHHc
Confidence 3455543 344445542 346522 9999999999985 8899999999999999999 7999999999999
Q ss_pred CCcChHHHHHHhhhcccCCCCccccHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHH
Q psy14237 128 ALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQ 207 (360)
Q Consensus 128 t~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L 207 (360)
|++|+|+||+|||++|+||+||||+|+|++||+++.+. ..++++++|.+.+++|++||||||||||+.|||+++|
T Consensus 100 t~ad~~~av~agl~al~Gp~HGGA~e~~~~~l~~i~~~-----~~~~~~~~v~~~~~~~~~i~GFGH~vy~~~DPRa~~L 174 (265)
T cd06101 100 TLSDPYSAIAAAIAALKGPLHGGANEAVLKMLEEIGTP-----KNEPAEAYIRKKLNSKRVLMGFGHRVYKKYDPRATVL 174 (265)
T ss_pred cCCcHHHHHHHHHHhCCCCCcCCHHHHHHHHHHHhCcc-----ccccHHHHHHHHHhcCCCccCCCCCCCCCCCCChHHH
Confidence 99999999999999999999999999999999887421 2367899999999999999999999999999999999
Q ss_pred HHHHHhhCC---CChHHHHHHHHHHhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHH
Q psy14237 208 REFAQKHLP---DDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLI 284 (360)
Q Consensus 208 ~~~a~~~~~---~~~~~~~a~~le~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~ 284 (360)
+++++++.. +++++++++++|+++.+.. ..|+++||||||+|+++++|||| +++||++|++||++||+||++
T Consensus 175 ~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~----~~k~l~pNvd~~~a~v~~~lG~p-~~~~~~lf~i~R~~Gw~AH~~ 249 (265)
T cd06101 175 KKFAEKLLKEKGLDPMFELAAELEKIAPEVL----YEKKLYPNVDFYSGVLYKAMGFP-TELFTPLFAVSRAVGWLAHLI 249 (265)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh----hccCCCCChHHHHHHHHHHhCCC-hHhhhhHHHHHhHhHHHHHHH
Confidence 999988743 5899999999999886532 13899999999999999999998 599999999999999999999
Q ss_pred HHHHcCCCcccCcccc
Q psy14237 285 WDRALGLPIERPKSLS 300 (360)
Q Consensus 285 Eq~~~~~~i~RP~~~y 300 (360)
||+.++.+|+||++.|
T Consensus 250 Eq~~~~~~i~RP~~~Y 265 (265)
T cd06101 250 EQREDGQRIIRPRAEY 265 (265)
T ss_pred HHHhcCCCccCCCccC
Confidence 9999876899999988
No 36
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=8.8e-61 Score=460.29 Aligned_cols=207 Identities=23% Similarity=0.353 Sum_probs=192.4
Q ss_pred CCCCCCCHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHH
Q psy14237 76 AIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEV 155 (360)
Q Consensus 76 ~p~~~ls~a~nfl~ml~g~~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v 155 (360)
.+.++.++.+||++|+++ ++.++++||++|||+|||| +|||||++|+++||++|+|+||+|||++|+||+||||+|.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~LVL~ADHg-ln~St~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a 153 (282)
T cd06102 76 AAPSDAPVHRRLARAWGL-DPAAADLLRRALVLLADHE-LNASTFAARVAASTGASLYAAVLAGLAALSGPRHGGATARV 153 (282)
T ss_pred CCCCcccHHHHHHHHhcC-CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHH
Confidence 445678999999999988 5688999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhH
Q psy14237 156 LIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVL 235 (360)
Q Consensus 156 ~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~ 235 (360)
++||+++. +.++++++|++.+++|++|||||||+||+.|||+++|+++++++.. +++++++++++++.+
T Consensus 154 ~~~l~e~~-------~~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa~~L~~~~~~~~~--~~~~~a~~ve~~~~~-- 222 (282)
T cd06102 154 EALLDEAL-------RAGDAEAAVRERLRRGEALPGFGHPLYPDGDPRAAALLAALRPLGP--AAPPAARALIEAARA-- 222 (282)
T ss_pred HHHHHHhc-------CCccHHHHHHHHHHcCCcccCCCCCCCCCCCccHHHHHHHHHHHhh--HHHHHHHHHHHHHHH--
Confidence 99998874 2468899999999999999999999999999999999999998765 899999999998865
Q ss_pred HhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccccch
Q psy14237 236 IETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTN 302 (360)
Q Consensus 236 ~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g 302 (360)
.++++||||||++++++.||||+ ++++++|++||++||+||++||++++ +++||++.|+|
T Consensus 223 -----~~gl~pNvD~a~a~l~~~lG~p~-~~~~~lF~~~R~~GwiAH~~Eq~~~~-~liRP~~~Y~G 282 (282)
T cd06102 223 -----LTGARPNIDFALAALTRALGLPA-GAAFALFALGRSAGWIAHALEQRAQG-KLIRPRARYVG 282 (282)
T ss_pred -----HHCCCCChHHHHHHHHHHcCCCh-hhcchHHHHHHHHHHHHHHHHHHhcC-CCcCCCcccCC
Confidence 26799999999999999999985 89999999999999999999999985 89999999996
No 37
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=2.4e-57 Score=433.42 Aligned_cols=228 Identities=20% Similarity=0.187 Sum_probs=204.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcccCCC
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPL 147 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL~Gpl 147 (360)
+|.++.+.-.+.||.++|++|++|+ ++++.++|+++||++|||| +|||||++|+++||++|+|+||+|||+++ ||+
T Consensus 24 rG~~~~dL~~~~sf~e~~~lll~G~lP~~~e~r~f~a~Lv~~adHg-~~~St~aar~~ast~~~l~~av~agl~a~-G~~ 101 (263)
T PRK06224 24 RGYDLEDLIGKLSFTDMIFLLLRGRLPTPNEARLLDAVLVALVDHG-LTPSAAAARMTASGGESLQGAVAAGLLAL-GSV 101 (263)
T ss_pred CCccHHHHhhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhcCccHHHHHHHHHhhc-ccc
Confidence 5777766667899999999999997 8889999999999999999 89999999999999999999999999999 999
Q ss_pred CccccHHHHHHHHHHHHHcCCCcc-hhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHH
Q psy14237 148 HGLANQEVLIWLKKLQQQVGDNVS-EEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQ 226 (360)
Q Consensus 148 HGGA~e~v~~~l~~i~~~ig~~~~-~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~ 226 (360)
||||+++|++||+++...+++..+ .++++++|++.+++|++||||||++||..|||+++|+++++++...+++++++++
T Consensus 102 hgGa~~~a~~~l~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~~DPRa~~L~~~~~~~~~~~~~~~~a~~ 181 (263)
T PRK06224 102 HGGAGEQAAELLQEIAAAADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKPVDPRAPRLLALAREAGVAGRHCRLAEA 181 (263)
T ss_pred cCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHH
Confidence 999999999999999865543212 3579999999999999999999999999999999999999998767899999999
Q ss_pred HHHhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCc------ccc
Q psy14237 227 VYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPK------SLS 300 (360)
Q Consensus 227 le~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~------~~y 300 (360)
+++++.+. +.|+++||||||+|+++++||||+ ++|+++|+++|++||+||++||+.++ .++||. ..|
T Consensus 182 ~~~~~~~~-----~~~~l~~Nvd~~~a~l~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~~~~-~~~r~~~~~~~~~~Y 254 (263)
T PRK06224 182 LEAALAAA-----KGKPLPLNVDGAIAAILADLGFPP-ALARGLFVISRAAGLVAHVWEELQQP-IGFRIWDPAEEAVEY 254 (263)
T ss_pred HHHHHHHh-----cCCCCCccHHHHHHHHHHHcCCCh-HHHhHHHHHHHHHHHHHHHHHHHhCC-CCcCCCCChhhccee
Confidence 99987642 347799999999999999999985 89999999999999999999999876 455666 789
Q ss_pred chhHHH
Q psy14237 301 TNDLVK 306 (360)
Q Consensus 301 ~g~~~~ 306 (360)
+|+..+
T Consensus 255 ~G~~~r 260 (263)
T PRK06224 255 TGPPPR 260 (263)
T ss_pred cCCCCC
Confidence 997643
No 38
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=1.6e-55 Score=412.48 Aligned_cols=217 Identities=23% Similarity=0.263 Sum_probs=193.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCC-CcchhhhhhhhcCC-cChHHHHHHhhhcccCC
Q psy14237 71 GKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGG-NVSAHTVHLVGSAL-SDPYLSFAAGMNGLAGP 146 (360)
Q Consensus 71 G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~-n~STfaaRvvaSt~-ad~ysavaAgi~aL~Gp 146 (360)
|+++.+..++.||.+||++|++|+ ++.+.++||.+||++|||| + |||||++|+++||+ +|+|+||+||++++ ||
T Consensus 1 G~~~~dL~~~~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg-~~~~St~aar~~astg~~~~~~~vaag~~a~-G~ 78 (227)
T cd06100 1 GYDLSDLIGKISFGDVLYLLLKGRLPTPYEARLLEALLVALADHG-PATPSAHAARLTASAGPEDLQSAVAAGLLGI-GD 78 (227)
T ss_pred CCCHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHcCCccHHHHHHHHHhcc-CC
Confidence 344445556789999999999987 7889999999999999999 7 99999999999999 99999999999999 99
Q ss_pred CCccccHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCCCCCCCcHHHHHHHHHhhCCCChHHHHHHH
Q psy14237 147 LHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQ 226 (360)
Q Consensus 147 lHGGA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvYk~~DPRa~~L~~~a~~~~~~~~~~~~a~~ 226 (360)
+||||+|.+++||+++.+..++ ..+++++||++.+++|++|||||||+||+.|||+++|+++++++...+++++++.+
T Consensus 79 ~hgga~e~~~~~l~~~~~~~~~--~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~DPRa~~L~~~~~~~~~~~~~~~~~~~ 156 (227)
T cd06100 79 RFGGAGEGAARLFKEAVDSGDA--LDAAAAEFVAEYRAAKKRIPGFGHPVHKNPDPRVPRLLELARELGPAGPHLDYALA 156 (227)
T ss_pred cccChHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCchHHHHHHHHHHhccCCHHHHHHHH
Confidence 9999999999999998653221 34789999999999999999999999999999999999999998777899999999
Q ss_pred HHHhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCcc
Q psy14237 227 VYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKS 298 (360)
Q Consensus 227 le~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~ 298 (360)
+++++.+. +.|+++||||||+|+++++||||+ ++++++|+++|++||+||++||++++ ..+||..
T Consensus 157 ~~~~~~~~-----~~~~l~~Nvd~~~a~~~~~lG~p~-~~~~~lf~~~R~~G~~AH~~Eq~~~~-~~~~~~~ 221 (227)
T cd06100 157 VEKALTAA-----KGKPLPLNVDGAIAAILLDLGFPP-GALRGLFVLGRSPGLIAHALEEKRLG-QPLYRHP 221 (227)
T ss_pred HHHHHHhc-----cCCCCcccHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCc
Confidence 99987541 346899999999999999999985 89999999999999999999999987 4456643
No 39
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=8.4e-51 Score=423.47 Aligned_cols=211 Identities=23% Similarity=0.296 Sum_probs=187.9
Q ss_pred CCCCCCCCCC-CCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcch-hhhhhhhcCCcChHHHHHHhhhcccC
Q psy14237 70 GGKGIGAIDT-NKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSA-HTVHLVGSALSDPYLSFAAGMNGLAG 145 (360)
Q Consensus 70 ~G~~~~~p~~-~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~ST-faaRvvaSt~ad~ysavaAgi~aL~G 145 (360)
+|.++.+..+ +++|++.|++|+.|+ ++.++++||++|||+|||| +|||| |++|+++||++|+|+||+|||+++ |
T Consensus 368 rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~~~~~ld~~Lvl~ADHG-~~aSt~~aarv~AStg~dl~savaaGl~al-G 445 (608)
T PLN02522 368 AGVPMSSIIEKDYGVGDVISLLWFKRSLPRYCTKFIEMCIMLCADHG-PCVSGAHNTIVTARAGKDLVSSLVSGLLTI-G 445 (608)
T ss_pred CCccHHHHhccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC-CCccHHHHHHHhhccCCcHHHHHHHHHHhc-C
Confidence 4666655556 689999999999886 8889999999999999999 89999 589999999999999999999998 9
Q ss_pred CCCccccHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHhCCCcccccCCCCC--CCCCCcHHHHHHHHHhhCCCChHHHH
Q psy14237 146 PLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVL--RKTDPRYTCQREFAQKHLPDDSLFKL 223 (360)
Q Consensus 146 plHGGA~e~v~~~l~~i~~~ig~~~~~~~~~~~v~~~l~~g~~IpGFGHrvY--k~~DPRa~~L~~~a~~~~~~~~~~~~ 223 (360)
|+||||+|.|++||+++.+ +..++++||++++++|++|||||||+| ++.|||+++|++++++.....+++++
T Consensus 446 p~hGGA~e~a~~~l~ei~~------~~~~~~~~V~~~~~~~~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~~~~~~~~~ 519 (608)
T PLN02522 446 PRFGGAIDDAARYFKDAYD------RGLTPYEFVEGMKKKGIRVPGIGHRIKSRDNRDKRVELLQKYARTHFPSVKYMEY 519 (608)
T ss_pred CcccchHHHHHHHHHHHhc------cccCHHHHHHHHHhCCCccccCCCCCCCCCCCChhHHHHHHHHHHhccccHHHHH
Confidence 9999999999999998752 234799999999999999999999999 57799999999999998778899999
Q ss_pred HHHHHHhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchh--------------hHHhhhhhHHHHHhHHHHHHc
Q psy14237 224 VSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYT--------------VLFGVSRALGVLASLIWDRAL 289 (360)
Q Consensus 224 a~~le~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t--------------~lFaisR~~Gw~AH~~Eq~~~ 289 (360)
++++|+++.+ ++|+|+||||||+|+++.+||+|. ++|| ++|++||++||+||++||+..
T Consensus 520 a~~vE~~~~~------~~k~L~~NVDga~a~i~~~lg~p~-~~ft~~e~~~~~~~~~~~~lF~l~R~~GwiAH~~Eq~~~ 592 (608)
T PLN02522 520 AVQVETYTLS------KANNLVLNVDGAIGSLFLDLLAGS-GMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRL 592 (608)
T ss_pred HHHHHHHHhh------ccCCCCcCcHhHHHHHHHHcCCCc-ccCccccccccccccccceEEEeehHHHHHHHHHHHHHh
Confidence 9999997643 348999999999999999999984 8888 899999999999999999865
Q ss_pred CCCccc
Q psy14237 290 GLPIER 295 (360)
Q Consensus 290 ~~~i~R 295 (360)
..+++|
T Consensus 593 ~~~~~r 598 (608)
T PLN02522 593 KQPLYR 598 (608)
T ss_pred hCCccc
Confidence 544444
No 40
>KOG1254|consensus
Probab=99.62 E-value=4.2e-16 Score=157.23 Aligned_cols=191 Identities=20% Similarity=0.192 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCcch-hhhhhhhcCCcChHHHHHHhhhcccCCCCccccHHHHHHHHHHHHHcCCCcchh
Q psy14237 95 NHQFTELMRLYLTIHSDHEGGNVSA-HTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEE 173 (360)
Q Consensus 95 ~~~~~~~ld~~LIL~ADHe~~n~ST-faaRvvaSt~ad~ysavaAgi~aL~GplHGGA~e~v~~~l~~i~~~ig~~~~~~ 173 (360)
.+...+.+|.++.+.+||+ -.+|- .-.-+.+.+++|+++++++|+.. .|++.|||...+.+.+.+..++ .-
T Consensus 388 p~Ya~kfie~~~m~~aDhg-p~Vsga~ntI~~~ra~kdl~sslv~gLlt-igdRfggald~aaR~f~~ayd~------GL 459 (600)
T KOG1254|consen 388 PQYARKFIEICTMLTADHG-PAVSGAGNTIANFRAGKDLFSSLVRGLLT-IGDRFGGALDIAARRFGPAYDK------GL 459 (600)
T ss_pred hHHHHHHHHHHhhccCCCC-ceeEeccCceEEeccHHHHHHHHHHHHhh-hhhhhcchhhHHHHhcChhhhc------cC
Confidence 3445679999999999998 57773 44556688999999999999999 6999999998888888765432 23
Q ss_pred HHHHHHHHHHhCCCcccccCCCCC--CCCCCcHHHHHHHHHhhCCCChHHHHHHHHHHhcchhHHhhCCCCCCCCchhhH
Q psy14237 174 KLKEFIWNTLKSGQVVPGYGHAVL--RKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAH 251 (360)
Q Consensus 174 ~~~~~v~~~l~~g~~IpGFGHrvY--k~~DPRa~~L~~~a~~~~~~~~~~~~a~~le~~~~~~~~~~~~~k~l~pNVD~y 251 (360)
.+-++|.+++..+.+|||.|||+- .+.|-|..++++.+++.++..|+++.|.++|++... |+.+|-.|||+.
T Consensus 460 ~~m~fv~~~~k~~~~V~Gighriksi~n~d~rv~~lk~~~~~~fp~~~~~~yal~ve~~t~~------k~~nlilnvdg~ 533 (600)
T KOG1254|consen 460 APMRFVGKMRKVPIEVYGIGHRIKSINNPDKRVEILKAFARKNFPATPLLDYALEVEKITTS------KKPNLILNVDGA 533 (600)
T ss_pred chHHHhhhhhCCCceecCCcceeeccCCcccchhhHHHHHHhhCCCchHHHhhhhheeeecc------CCCCEEEeccch
Confidence 578899999999999999999987 356779999999999999999999999999998743 567999999999
Q ss_pred HHHHHHHhCCCC-------------ccchhhHHhhhhhHHHHHhHHHHHHcCCCcccCccc
Q psy14237 252 SGVLLQYYGLKE-------------MNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSL 299 (360)
Q Consensus 252 sa~l~~~LGiP~-------------~~~~t~lFaisR~~Gw~AH~~Eq~~~~~~i~RP~~~ 299 (360)
.|+++-+|=-.. -.....+|+++|..|++.|++.|.+..++++|--|.
T Consensus 534 i~~~fvd~l~~~g~ft~~e~~e~i~ig~lng~fvl~rsig~igh~~dqkrlkq~lyrhpwd 594 (600)
T KOG1254|consen 534 IAVLFVDLLRNSGMFTKEEADEYINIGALNGLFVLGRSIGFIGHYLDQKRLKQGLYRHPWD 594 (600)
T ss_pred hHHHHHHHHhccCCccHHHhhhheecccccceEEeeeecchhhhhccHhhhhCccccCCch
Confidence 999998762111 012368999999999999999999987788776554
No 41
>PRK12349 citrate synthase 3; Provisional
Probab=64.61 E-value=1.2e+02 Score=30.78 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhh--cCCcChHHHHHHhhhccc
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVG--SALSDPYLSFAAGMNGLA 144 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvva--St~ad~ysavaAgi~aL~ 144 (360)
+|.++.+.-.+.+|-+.+..+++|+ ++.+.+.|+..| .+|+ .-|+.... ++- ...+++...+.++++++.
T Consensus 32 RGydi~dLa~~~sFeeva~LL~~G~LP~~~e~~~f~~~L---~~~~-~~p~~v~~-~l~~~p~~~~pm~~l~~~vs~l~ 105 (369)
T PRK12349 32 QGYDLIELSKTKEYLDIVHLLLEEHLPNEDEKATLEKKL---KEEY-AVPEGVFN-ILKALPKETHPMDGLRTGVSALA 105 (369)
T ss_pred CCccHHHHHccCCHHHHHHHHHCCCCCCHHHHHHHHHHH---Hhcc-CCCHHHHH-HHHhCCCCCCHHHHHHHHHHHhc
Confidence 5777776667789999888888887 888888999888 5887 45554333 332 235677777778887764
No 42
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=42.15 E-value=42 Score=34.60 Aligned_cols=71 Identities=11% Similarity=-0.036 Sum_probs=47.7
Q ss_pred CCCCCCCCCCC------CCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcC-CcChHHHHHHhh
Q psy14237 70 GGKGIGAIDTN------KDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSA-LSDPYLSFAAGM 140 (360)
Q Consensus 70 ~G~~~~~p~~~------ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt-~ad~ysavaAgi 140 (360)
+|.++.+.-.+ .+|-+.++.+++|+ ++++.+.|+..|. .|. .-|...+..++.+- .+++-.++.+++
T Consensus 41 RGy~I~dLa~~~p~~~~~sFEev~yLLl~G~LPt~~el~~f~~~L~---~~~-~lp~~~~~~~i~~~p~~hpM~~L~a~v 116 (406)
T cd06113 41 RGYDVEDLVNGAQKENRFGFEETAYLLLFGYLPNKEELEEFCEILS---SYR-TLPDNFVEDVILKAPSKDIMNKLQRSV 116 (406)
T ss_pred CCCcHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH---Hhc-CCCHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 35655433333 48999888889987 8888889998885 444 34444333344333 258889999999
Q ss_pred hccc
Q psy14237 141 NGLA 144 (360)
Q Consensus 141 ~aL~ 144 (360)
+++.
T Consensus 117 ~~l~ 120 (406)
T cd06113 117 LALY 120 (406)
T ss_pred Hhcc
Confidence 8873
No 43
>PRK14036 citrate synthase; Provisional
Probab=41.74 E-value=3e+02 Score=28.13 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhh--cCCcChHHHHHHhhhccc
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVG--SALSDPYLSFAAGMNGLA 144 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvva--St~ad~ysavaAgi~aL~ 144 (360)
+|.++.+.-.+.+|-+.++++++|+ ++.+.+.|+..|. +|..++.. ...++. -..+++...+.+++++|.
T Consensus 31 RGy~i~dL~~~~~Feev~~LLl~G~lP~~~el~~f~~~L~---~~~~lp~~--v~~~i~~~p~~~hpm~~L~~~vs~l~ 104 (377)
T PRK14036 31 RGYPIEELAEKSSFLETAYLLIWGELPTAEELEEFEQEVR---MHRRVKYR--IRDMMKCFPETGHPMDALQASAAALG 104 (377)
T ss_pred CCccHHHHHccCCHHHHHHHHHcCCCCCHHHHHHHHHHHH---HccCCCHH--HHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 5777777777889999999999987 8888889998885 55422322 334443 234678888888888873
No 44
>PRK14032 citrate synthase; Provisional
Probab=40.88 E-value=47 Score=34.73 Aligned_cols=71 Identities=13% Similarity=-0.020 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCC------CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhh-cCCcChHHHHHHhh
Q psy14237 70 GGKGIGAIDTNK------DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVG-SALSDPYLSFAAGM 140 (360)
Q Consensus 70 ~G~~~~~p~~~l------s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvva-St~ad~ysavaAgi 140 (360)
+|.++.+.-.+. +|-+.++.+++|+ ++++.+.|+..|.-+.+ -|..|+.+++. ...++|-..+.+++
T Consensus 71 RGy~I~dLa~~~~~~~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~----lp~~~v~~~i~~~p~~hPM~~L~a~v 146 (447)
T PRK14032 71 RGYDIKDLVNGFLKEKRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRE----LPDGFTRDMILKAPSKDIMNSLARSV 146 (447)
T ss_pred CCccHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC----CCHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 467665554554 8999998899987 88888999999954422 33334555553 33458899999999
Q ss_pred hccc
Q psy14237 141 NGLA 144 (360)
Q Consensus 141 ~aL~ 144 (360)
++|.
T Consensus 147 saL~ 150 (447)
T PRK14032 147 LALY 150 (447)
T ss_pred Hhhh
Confidence 9984
No 45
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=36.95 E-value=2.1e+02 Score=29.65 Aligned_cols=70 Identities=7% Similarity=0.088 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhh--cCCcChHHHHHHhhhccc
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVG--SALSDPYLSFAAGMNGLA 144 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvva--St~ad~ysavaAgi~aL~ 144 (360)
+|.++.+.-.+.+|-|-++.++.|+ ++.+.+.|+.-|. .|..++... ..++- ...++|...+.+++++|.
T Consensus 52 RGy~I~dLa~~~~feEv~~LLl~G~LPt~~el~~f~~~L~---~~~~lp~~v--~~~i~~~p~~~hPM~~L~~~vs~l~ 125 (410)
T cd06115 52 RGYPIEELAEKSTFLEVAYLLIYGNLPTKSQLSDWEFAVS---QHTAVPTGV--LDMIKSFPHDAHPMGMLVSAISALS 125 (410)
T ss_pred CCccHHHHHhcCCHHHHHHHHHcCCCcCHHHHHHHHHHHH---HccCCCHHH--HHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 5777776666778999887888887 7888888888885 444233333 44443 335778888888888774
No 46
>PRK14037 citrate synthase; Provisional
Probab=33.35 E-value=74 Score=32.51 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhh--cCCcChHHHHHHhhhccc
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVG--SALSDPYLSFAAGMNGLA 144 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvva--St~ad~ysavaAgi~aL~ 144 (360)
+|.++.+.-.+.+|-+.++.+++|+ ++.+.+.|+..|.-+ ..+++. ...++- -..+++-..+.+++++|.
T Consensus 31 RGy~i~dL~~~~~Feev~~LLl~G~lP~~~e~~~f~~~L~~~---~~lp~~--v~~~~~~~p~~~hpm~~l~~~vs~l~ 104 (377)
T PRK14037 31 RGYNIEDLVNYGSYEETIYLMLYGELPTKKELNDLKEKLNEE---YEVPQE--VIDSIYLMPRDSDAIGLMEAAFAALA 104 (377)
T ss_pred CCccHHHHHccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH--HHHHHHhCCccCCcHHHHHHHHHhhh
Confidence 4777766667789999999999987 888889999888533 323443 333332 233577777778877763
No 47
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=33.03 E-value=89 Score=31.51 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhc--CCcChHHHHHHhhhccc
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGS--ALSDPYLSFAAGMNGLA 144 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaS--t~ad~ysavaAgi~aL~ 144 (360)
+|.++.+.-.+.+|-+...++++|+ ++.+.+.++..| ++|+ .-|+. ...++.+ ..+++-..+.++++++.
T Consensus 26 RG~~i~dL~~~~~feeva~LL~~G~lP~~~el~~f~~~L---~~~~-~~p~~-v~~~~~~~p~~~~pm~~l~~~~~~l~ 99 (358)
T cd06118 26 RGYDIEELAEKSSFEEVAYLLLYGKLPTKEELAEFKKKL---ASHR-ALPEH-VVEILDLLPKNAHPMDVLRTAVSALG 99 (358)
T ss_pred CCccHHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcc-CCCHH-HHHHHHhcCCCCChHHHHHHHHHhhh
Confidence 5777777777789999988889887 777778888887 5786 44443 4444433 35677777777777764
No 48
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=31.73 E-value=1.8e+02 Score=22.55 Aligned_cols=56 Identities=16% Similarity=0.289 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCC--cccccCCCCCCCCC-CcHHHHHHHHHhh----CCCChHHHHHHHHHHh
Q psy14237 175 LKEFIWNTLKSGQ--VVPGYGHAVLRKTD-PRYTCQREFAQKH----LPDDSLFKLVSQVYKV 230 (360)
Q Consensus 175 ~~~~v~~~l~~g~--~IpGFGHrvYk~~D-PRa~~L~~~a~~~----~~~~~~~~~a~~le~~ 230 (360)
+++.|++..++|+ .+||.|-++=...+ |....-..++.+. ..-.+|+++-.++++.
T Consensus 2 ~e~~I~~A~~~GeFdnLpG~GKPL~~~~~~~~~~~~~~~~~~iLk~~g~lPp~i~l~kei~~l 64 (71)
T PF09350_consen 2 AERRIREAMARGEFDNLPGAGKPLPLDDDNPYWPAEERMANRILKNAGYLPPWIELRKEIEEL 64 (71)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCCCCCcCCCHHHHHHHHhhcccCCCCHHHHHHHHHHHH
Confidence 4566777777774 79999998875444 5443333333332 2346888888877664
No 49
>PRK10203 hypothetical protein; Provisional
Probab=28.57 E-value=2.7e+02 Score=24.15 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCC--cccccCCCCCCCCCCcHHH----HHHHHHhhCCCChHHHHHHHHH
Q psy14237 174 KLKEFIWNTLKSGQ--VVPGYGHAVLRKTDPRYTC----QREFAQKHLPDDSLFKLVSQVY 228 (360)
Q Consensus 174 ~~~~~v~~~l~~g~--~IpGFGHrvYk~~DPRa~~----L~~~a~~~~~~~~~~~~a~~le 228 (360)
-+++.|++..++|+ .+||.|-|+=...||-... ...+.+....-.+++++-.+++
T Consensus 7 ~~E~~I~eA~~~GefdnLpG~GKPL~~~d~~~~p~e~r~~~rilknag~lP~el~LrKE~~ 67 (122)
T PRK10203 7 WAERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAI 67 (122)
T ss_pred HHHHHHHHHHHcCCccCCCCCCCCCCCccCCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 46777888888885 8999999997655653221 1222222222356666655555
No 50
>PF11591 2Fe-2S_Ferredox: Ferredoxin chloroplastic transit peptide; InterPro: IPR023383 This entry represent the N-terminal transit peptide of a number of algal petF genes. The peptide is removed during transit into the chloroplast lumen. The structure of chloroplast ferredoxin in water is unstructured however in a 30:70 molar-ratio mixture of 2,2,2-trifluoroethanol, residues 3 to 13 form an alpha-helix. The rest of the peptide remains unstructured []. This domain is the N-terminal of the [2Fe-2S), ferredoxin, from, C.reinhardtii:, petF., This, protein, catalyses, the, final, reaction, in, a, pathway, which, allows, the, production, of, H(2), from, water, in, the, chloroplast, ]. ; PDB: 1FCT_A.
Probab=27.74 E-value=26 Score=23.12 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=8.1
Q ss_pred chhhhhhhhcC
Q psy14237 118 SAHTVHLVGSA 128 (360)
Q Consensus 118 STfaaRvvaSt 128 (360)
|+|++||+++-
T Consensus 7 ssfaarvagar 17 (34)
T PF11591_consen 7 SSFAARVAGAR 17 (34)
T ss_dssp HHHHHHT-TSG
T ss_pred HHHHHHHccCc
Confidence 88999998654
No 51
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=23.76 E-value=3.1e+02 Score=25.44 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=57.5
Q ss_pred CCCCCCCCcHHHHHHHHHhhCCC-ChHHHHHHHHHHhcchhHHhhCCCCCCCCchhhHHHHHHHHhCCCCccchhhHHhh
Q psy14237 195 AVLRKTDPRYTCQREFAQKHLPD-DSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGV 273 (360)
Q Consensus 195 rvYk~~DPRa~~L~~~a~~~~~~-~~~~~~a~~le~~~~~~~~~~~~~k~l~pNVD~ysa~l~~~LGiP~~~~~t~lFai 273 (360)
++. ++|||..-+++++.++... +.+.++..++.+...++..++ .=.|.++..++..+..+..+|=.+
T Consensus 8 ~~~-~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~-----------~e~g~~f~~ls~~E~~l~~~le~~ 75 (201)
T cd07622 8 RLR-NPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIH-----------ANYGRVFSEWSAIEKEMGDGLQKA 75 (201)
T ss_pred cCC-CCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcchhHHHHHHHH
Confidence 554 6999999999999876322 234555544443332221111 113566677777656787888888
Q ss_pred hhhHHHHHhHHHHHHcCCCcccCccccchhHHHH
Q psy14237 274 SRALGVLASLIWDRALGLPIERPKSLSTNDLVKQ 307 (360)
Q Consensus 274 sR~~Gw~AH~~Eq~~~~~~i~RP~~~y~g~~~~~ 307 (360)
|+.+.=++=.+++.... ...|.+++.+|
T Consensus 76 g~~~d~~~~~~~~~~~~------~~~f~e~LkEy 103 (201)
T cd07622 76 GHYMDSYAASIDNGLED------EELIADQLKEY 103 (201)
T ss_pred HHHHHHHHHHHHHHHHh------hhhhHHHHHHH
Confidence 88888777777775532 23455555554
No 52
>PRK09569 type I citrate synthase; Reviewed
Probab=23.61 E-value=8.6e+02 Score=25.45 Aligned_cols=59 Identities=7% Similarity=-0.019 Sum_probs=40.2
Q ss_pred CHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcc
Q psy14237 82 DWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGL 143 (360)
Q Consensus 82 s~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL 143 (360)
+|-+.++.++.|+ ++++.+.|..-|. .|..++.....+--.--..++|-..+.++++++
T Consensus 85 ~fEev~~LLl~G~LPt~~el~~f~~~L~---~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l 145 (437)
T PRK09569 85 TVESFWYFLLTGEVPTQEQVQEVVAEWK---KRQNVPQYVIDAIRALPRDSHPMVMLSVGILAM 145 (437)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 7888888888887 7788788888774 444233333322222344578888899999886
No 53
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=23.24 E-value=4.6e+02 Score=26.65 Aligned_cols=71 Identities=15% Similarity=0.048 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhhcCCcChHHHHHHhhhcc
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGL 143 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvvaSt~ad~ysavaAgi~aL 143 (360)
+|.++.+.-.+-+|-|-...+++|+ ++++.+.|+.-|. +|..++....-+--.-...+++-..+.++++++
T Consensus 26 RGy~i~dLa~~~sfeeva~LLl~G~lPt~~el~~f~~~L~---~~~~lp~~v~~~i~~~p~~~hpm~~L~~~vs~l 98 (363)
T cd06108 26 RGYDIEDLAENATFEEVAYLLLYGKLPTRKQLDAYKTKLV---ALRRLPAALKTVLELIPKDSHPMDVMRTGCSML 98 (363)
T ss_pred CCccHHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHH---HhcCCCHHHHHHHHhCCCCCChHHHHHHHHHhh
Confidence 5777766666778988888888887 7777777777774 333234433222222233467777788888776
No 54
>PRK12351 methylcitrate synthase; Provisional
Probab=23.00 E-value=8.3e+02 Score=25.01 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhhh--cCCcChHHHHHHhhhccc
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLVG--SALSDPYLSFAAGMNGLA 144 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvva--St~ad~ysavaAgi~aL~ 144 (360)
+|.++.+.-.+.+|-|.+..++.|+ ++.+.+.|+.-|. .|..++.. ...++. ...++|-..+.+++++|.
T Consensus 35 RGy~I~dLa~~~~feeva~LL~~G~LP~~~el~~f~~~L~---~~~~lp~~--v~~~i~~~p~~~hPM~~L~~~vs~l~ 108 (378)
T PRK12351 35 RGYDILDLAEHCEFEEVAHLLVHGKLPTQAELAAYKTKLK---ALRGLPAA--VKTVLEAIPAAAHPMDVMRTGVSVLG 108 (378)
T ss_pred CCccHHHHHhcCCHHHHHHHHHCCCCCCHHHHHHHHHHHH---HhCCCCHH--HHHHHHhCCccCCHHHHHHHHHHhhc
Confidence 6888877767788999888888887 7777788887774 44422333 344443 334688888888888874
No 55
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=22.25 E-value=1.7e+02 Score=29.74 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCCCcchhhhhhh--hcCCcChHHHHHHhhhccc
Q psy14237 70 GGKGIGAIDTNKDWSANFTSMLGFD--NHQFTELMRLYLTIHSDHEGGNVSAHTVHLV--GSALSDPYLSFAAGMNGLA 144 (360)
Q Consensus 70 ~G~~~~~p~~~ls~a~nfl~ml~g~--~~~~~~~ld~~LIL~ADHe~~n~STfaaRvv--aSt~ad~ysavaAgi~aL~ 144 (360)
+|.++.+.-.+.+|-+.++.+++|+ ++.+.+.++..|.-+ ..++.. ...++ -...+++-..+.+++++|.
T Consensus 28 RGy~i~dL~~~~~Feev~~LLl~G~lP~~~el~~~~~~L~~~---~~lp~~--v~~~i~~~p~~~hpm~~L~~~vs~l~ 101 (373)
T cd06112 28 RGYDIEELAEYSSFEEVALLLLDGDLPTAAELEEFDKELRQH---RRVKYN--IRDMMKCFPETGHPMDMLQATVAALG 101 (373)
T ss_pred CCccHHHHhcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHh---cCCCHH--HHHHHHhCCCCCCHHHHHHHHHHhhh
Confidence 4677766667789999999999987 888888999888543 323333 33333 2334688888888888874
No 56
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=21.97 E-value=3.7e+02 Score=25.65 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCC--cccccCCCCCCCCCCc----HHHHHHHHHhhCCCChHHHHHHHHHHhcc
Q psy14237 174 KLKEFIWNTLKSGQ--VVPGYGHAVLRKTDPR----YTCQREFAQKHLPDDSLFKLVSQVYKVVP 232 (360)
Q Consensus 174 ~~~~~v~~~l~~g~--~IpGFGHrvYk~~DPR----a~~L~~~a~~~~~~~~~~~~a~~le~~~~ 232 (360)
-+++-|++..++|+ .+||.|.++=...||= -..+.++.+....-.+|+++-.+|.+.+.
T Consensus 92 laE~rI~eAm~~GeFdNLpG~GKPL~ldd~p~vp~e~r~~nRILknaG~lPpwIeL~KEI~~~i~ 156 (221)
T PLN03085 92 VVEQRIWHSMEEGHFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRGQIN 156 (221)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 36667777778885 8999999986444443 23345555554555789998888877664
Done!