RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14237
(360 letters)
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 529 bits (1365), Expect = 0.0
Identities = 237/308 (76%), Positives = 271/308 (87%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
ML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKLP VA
Sbjct: 125 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVA 184
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 185 AKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 244
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+++IW
Sbjct: 245 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIW 304
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 305 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGK 364
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 365 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 424
Query: 301 TNDLVKQY 308
T L K
Sbjct: 425 TAGLEKLS 432
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 154 bits (391), Expect = 7e-44
Identities = 58/281 (20%), Positives = 114/281 (40%), Gaps = 28/281 (9%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
++ + PN++ MS ++AL + E+++ LIA P +
Sbjct: 79 LIQSLPNNMDDMSVLRTVVSALGEN------TYT-------FHPKTEEAIRLIAITPSII 125
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNV 117
A R + G+ A + N+ ML + + + Y+ + ++H N
Sbjct: 126 AYRKR--WTRGEQAIAPSSQYGHVENYYYML-TGEQPSEAKKKALETYMILATEHGM-NA 181
Query: 118 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKE 177
S + + S SD + A + + GPLHG A V K+ + +G +E +
Sbjct: 182 STFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVT----KMLEDIG---EKEHAEA 234
Query: 178 FIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIE 237
++ L+ G+ + G+GH V + DPR R+ A++ +D L V +L
Sbjct: 235 YLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGNDRDLDLALHVEAEAIRLLEI 294
Query: 238 TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALG 278
+ + NV+ ++ +++ + +T F SR +G
Sbjct: 295 YKPGRKLYTNVEFYAAAVMRAIDF-DDELFTPTFSASRMVG 334
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 153 bits (390), Expect = 1e-43
Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 27/284 (9%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
++ P + HPM I+ L + E VY + + AK+P +
Sbjct: 79 IMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTP-------EEVYRIGISVTAKIPTIV 131
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNV 117
A YR + G +ANF ML ++ + M + L ++++HE N
Sbjct: 132 ANWYR--IKNGLEYVPPKEKLSHAANFLYML-HGEEPPKEWEKAMDVALILYAEHEI-NA 187
Query: 118 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKE 177
S V VGS LSD Y + AG+ L GP+HG A +E + K ++G S EK++E
Sbjct: 188 STLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAI----KQFMEIG---SPEKVEE 240
Query: 178 FIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIE 237
+ + L+ + + G GH V + DPR +++A K L D LF++ ++ ++V L +
Sbjct: 241 WFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASK-LGDKKLFEIAERLERLVEEYLSK 299
Query: 238 TGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 281
K NVD SG++ + + YT +F + R G A
Sbjct: 300 ----KGISINVDYWSGLVFYGMKI-PIELYTTIFAMGRIAGWTA 338
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
in RSGI, structural genomics, lyase; 1.50A {Thermus
thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 153 bits (389), Expect = 2e-43
Identities = 75/305 (24%), Positives = 129/305 (42%), Gaps = 30/305 (9%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+P HPMS A++ S+ E +YE +DLIAK +
Sbjct: 81 SFKRYPVSAHPMSFLRTAVSEF---GML---DPTEGDISR--EALYEKGLDLIAKFATIV 132
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNV 117
A R + GK + +ANF M + + LM L +H++H N
Sbjct: 133 AANKR--LKEGKEPIPPREDLSHAANFLYMA-NGVEPSPEQARLMDAALILHAEHGF-NA 188
Query: 118 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKE 177
S T S +D Y + A + L GP HG AN+ V+ ++ Q++G + E+ +E
Sbjct: 189 STFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVM----RMIQEIG---TPERARE 241
Query: 178 FIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQK---HLPDDSLFKLVSQVYKVVPPV 234
++ L + + G GH V + DPR + A+ ++++ V + V
Sbjct: 242 WVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKV 301
Query: 235 LIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIE 294
L + +PNVD +SGV+ G + ++T +F V+R G + ++ + L +
Sbjct: 302 LNP----RGIYPNVDFYSGVVYSDLGF-SLEFFTPIFAVARISGWVGHILEYQELDNRLL 356
Query: 295 RPKSL 299
RP +
Sbjct: 357 RPGAK 361
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 153 bits (389), Expect = 5e-43
Identities = 97/332 (29%), Positives = 146/332 (43%), Gaps = 47/332 (14%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
N F HPM+ + AL S F Y D + +M LIAK+P +A
Sbjct: 128 FFNGFRRDAHPMAILCGTVGAL---SAF---YPDANDIAI-PANRDLAAMRLIAKIPTIA 180
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHSDH 112
A Y+ T G+ + +++ NF SM+ F N M L +H+DH
Sbjct: 181 AWAYKYTQ--GEAFIYPRNDLNYAENFLSMM-FARMSEPYKVNPVLARAMNRILILHADH 237
Query: 113 EGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSE 172
E N S TV L GS ++P+ AAG+ L GP HG AN+ VL L ++ +
Sbjct: 238 EQ-NASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARIG-------KK 289
Query: 173 EKLKEFIWNTL--KSGQVVPGYGHAVLRKTDPR-----YTCQREFAQKHLPDDSLFKLVS 225
E + FI SG + G+GH V + DPR TC + + DD L L
Sbjct: 290 ENIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAV 349
Query: 226 QVYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGL-KEMNYYTVLFGVSRALGVLAS 282
++ K+ ++ + +PNVD +SG++L+ G+ M +TVLF V+R G ++
Sbjct: 350 ELEKIALSDDYFVQ----RKLYPNVDFYSGIILKAMGIPTSM--FTVLFAVARTTGWVSQ 403
Query: 283 LIWDRALGLP---IERPKSLSTNDLVKQYSKI 311
W + P I RP+ L + Y +
Sbjct: 404 --WKEMIEEPGQRISRPRQLYIGAPQRDYVPL 433
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 152 bits (387), Expect = 8e-43
Identities = 84/326 (25%), Positives = 141/326 (43%), Gaps = 45/326 (13%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+ P H HPMS A + L + + K E E + +++AK+ +A
Sbjct: 129 AIAAMPQHTHPMSSLIAGVNVL---AAE---HIHNGQK----ESQDEVAKNIVAKIATIA 178
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQF------TELMRLYLTIHSDHEG 114
A YR+ GK ++ NF M+ D+ + + M +H+DHE
Sbjct: 179 AMAYRHNH--GKKFLEPKMEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHEQ 236
Query: 115 GNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEK 174
N S TV L GS + PY + AG+ L GP HG AN+ VL L ++ S E
Sbjct: 237 -NASTSTVRLSGSTGNSPYAAIIAGITALWGPAHGGANEAVLKMLSEIG-------STEN 288
Query: 175 LKEFIWNTL--KSGQVVPGYGHAVLRKTDPR-----YTCQREFAQKHLPDDSLFKLVSQV 227
+ ++I + G+GH V + TDPR C+ A+ D+ L + ++
Sbjct: 289 IDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKKNCEEILAKLGHSDNPLLTVAKKL 348
Query: 228 YKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIW 285
++ IE + + NVD +SG++L+ G+ + +T +F ++R G ++ W
Sbjct: 349 EEIALQDEFFIE----RKLFSNVDFYSGIILKAMGI-PEDMFTAIFALARTSGWISQ--W 401
Query: 286 DRALGLP---IERPKSLSTNDLVKQY 308
+ P I RP+ L T + +
Sbjct: 402 IEMVNDPAQKIGRPRQLYTGATNRNF 427
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 150 bits (381), Expect = 2e-42
Identities = 79/289 (27%), Positives = 124/289 (42%), Gaps = 36/289 (12%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
L PM A++ L E E + LI+K P +
Sbjct: 81 FLREVRKDAQPMDILRTAVSLLGIEDSKND------------ERTDIKGIKLISKFPTIV 128
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNV 117
A R + G I D S NF ML + N ++ M + L +H DHE N
Sbjct: 129 ANYAR--LRKGLDIIEPDPKLSHSENFLYML-YGDRPNEIKSKAMDVTLILHIDHEM-NA 184
Query: 118 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKE 177
S +V S SD Y S AG++ L GPLHG AN E L K+ +++G S EK+ +
Sbjct: 185 STFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEAL----KMFKEIG---SPEKVND 237
Query: 178 FIWNTLKSGQVVPGYGHAVLRKTDPR-----YTCQREFAQKHLPDDSLFKLVSQVYKVVP 232
+I N L + Q + G+GH V + DPR + ++ +L+++ +V ++
Sbjct: 238 YILNRLSNKQRIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIGI 297
Query: 233 PVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 281
L K +PNVD S ++ G E +++ +F +R +G +A
Sbjct: 298 KYLGP----KGIYPNVDFFSSIVFYSLGF-EPDFFPAVFASARVVGWVA 341
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
national project O structural and functional analyses;
HET: FLC; 1.90A {Thermotoga maritima}
Length = 367
Score = 149 bits (380), Expect = 3e-42
Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 29/281 (10%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+L + P +LH + ++ S E + E ++ + + P +
Sbjct: 80 ILYHLPKNLHYIDVLKIFLSIHGSMDGND-------------EDLREKAIRVASVFPTIL 126
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A YR + GK + + NF M+ + ++ L+ + + + N S
Sbjct: 127 AYYYR--YSKGKELIRPRKDLSHVENFYYMMFGERNEKIRLLESAFILLMEQDI-NASTF 183
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
++ S LSD Y + L GPLHG A+++V + +++G SE++++EF+
Sbjct: 184 AALVIASTLSDLYSCIVGALGALKGPLHGGASEKVP----PMLEEIG---SEDRVEEFVQ 236
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
LK + + G+GH V + DPR + Q+H PD LF++ S++ + + + K
Sbjct: 237 KCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYI-----VSNK 291
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 281
+KN +PNVD +S VL + G N +T LF +R +G A
Sbjct: 292 IKNIYPNVDLYSSVLFEELGF-PRNMFTALFATARVVGWTA 331
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 149 bits (380), Expect = 4e-42
Identities = 64/306 (20%), Positives = 118/306 (38%), Gaps = 32/306 (10%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+ P + AL + K + E E ++ +IAK+ +
Sbjct: 82 TIYLMPKEADAIGLLEVGTAAL---ASIDKNFKWK-------ENDKEKAISIIAKMATLV 131
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSML-GFDNHQF-TELMRLYLTIHSDHEGGNVS 118
A +YR + G + + ++ +F + M L +++DHE S
Sbjct: 132 ANVYR--RKEGNKPRIPEPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHEV-PAS 188
Query: 119 AHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEF 178
+ S LSD Y S A + L GPLHG A +E ++ +++ +
Sbjct: 189 TTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIG-------DPNRVQNW 241
Query: 179 IWNTLK-SGQVVPGYGHAVLRKTDPRYTCQREFAQKHL----PDDSLFKLVSQVYKVVPP 233
+ + + G+GH V + DPR ++ A + F++ ++ ++
Sbjct: 242 FNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEELGIK 301
Query: 234 VLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPI 293
K +PN D +SG++ G + +T LF +SR LG LA +I +
Sbjct: 302 QFSS----KGIYPNTDFYSGIVFYALGF-PVYMFTALFALSRTLGWLAHIIEYVEEQHRL 356
Query: 294 ERPKSL 299
RP++L
Sbjct: 357 IRPRAL 362
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 148 bits (376), Expect = 1e-41
Identities = 67/307 (21%), Positives = 120/307 (39%), Gaps = 34/307 (11%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+ + P + + A L + E ++ +IAK +
Sbjct: 83 TIFSMPRNCDAIGMMETAFGILA-------SIY---DPKWNRATNKELAVQIIAKTATIT 132
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNV 117
A IYR + G + ++ ++ +F + F + + M L +++DHE
Sbjct: 133 ANIYR--AKEGLKPKIPEPSESYAESFLAAT-FGKKPTQEEIKAMDASLILYTDHEV-PA 188
Query: 118 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKE 177
S + S LSD Y A + L GPLHG A +E K ++G E +
Sbjct: 189 STTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAF----KQFVEIGS---VENADK 241
Query: 178 FIWNTLKSG-QVVPGYGHAVLRKTDPRYTCQREFAQKHL----PDDSLFKLVSQVYKVVP 232
+ + G + G+GH V + DPR + A+ +++ ++ K+
Sbjct: 242 WFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKKYYEIAERIEKLGV 301
Query: 233 PVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLP 292
K+ +PN D +SG++ G + +T LF +SR LG LA +I
Sbjct: 302 DTFGS----KHIYPNTDFYSGIVFYALGF-PIYMFTSLFALSRVLGWLAHIIEYVEEQHR 356
Query: 293 IERPKSL 299
+ RP++L
Sbjct: 357 LIRPRAL 363
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 148 bits (376), Expect = 2e-41
Identities = 59/307 (19%), Positives = 118/307 (38%), Gaps = 31/307 (10%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+ P ++ AA+ A+ A +K + + + ++I ++ +
Sbjct: 86 AIRQLPRESDAVAMQMAAVAAMA-------ASETKFKWNK--DTDRDVAAEMIGRMSAIT 136
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSML-GFDNHQF-TELMRLYLTIHSDHEGGNVS 118
+YR + ++ +F + G + + M L +++DHE S
Sbjct: 137 VNVYR--HIMNMPAELPKPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHEV-PAS 193
Query: 119 AHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEF 178
+ S LSD Y A + L GPLHG A + + ++ ++++
Sbjct: 194 TTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAI----AQFDEIK---DPAMVEKW 246
Query: 179 IWNTLKSG-QVVPGYGHAVLRKTDPRYTCQREFAQKHL----PDDSLFKLVSQVYKVVPP 233
+ + +G + + G+GH V + DPR + A+K ++++ +++
Sbjct: 247 FNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIATKLEDFGIK 306
Query: 234 VLIETGKVKNPWPNVDAHSGVLLQYYGL-KEMNYYTVLFGVSRALGVLASLIWDRALGLP 292
K +PN D SG++ G N YT LF +SR G A I
Sbjct: 307 AFGS----KGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHFIEYVEEQQR 362
Query: 293 IERPKSL 299
+ RP+++
Sbjct: 363 LIRPRAV 369
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 148 bits (375), Expect = 2e-41
Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 28/286 (9%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
++ HPM A++ L + S E E +M L+A P V
Sbjct: 83 AIDLLSTACHPMDVARTAVSVL---GAN---HARAQDSSP--EANLEKAMSLLATFPSVV 134
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNV 117
A R + G+ + + D+SANF M F + E + + ++++H N
Sbjct: 135 AYDQR--RRRGEELIEPREDLDYSANFLWMT-FGEEAAPEVVEAFNVSMILYAEHSF-NA 190
Query: 118 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNV--SEEKL 175
S T ++ S L+D + + + L GPLHG AN+ V+ +++ + +++ + +
Sbjct: 191 STFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDESLDEAATRS 250
Query: 176 KEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQK---HLPDDSLFKLVSQVYKVVP 232
K ++ + L + V G+GH V + D R + H + +Y +
Sbjct: 251 KAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEML----GLYNGLE 306
Query: 233 PVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALG 278
+ E K PN+D +G G + +T LF +R G
Sbjct: 307 AAMEEA---KQIKPNLDYPAGPTYNLMGF-DTEMFTPLFIAARITG 348
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 148 bits (376), Expect = 3e-41
Identities = 86/327 (26%), Positives = 148/327 (45%), Gaps = 39/327 (11%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+ + F HPM+ AL + F Y+D + + + + L++K+P +A
Sbjct: 120 LFHAFRRDSHPMAVMCGITGAL---AAF---YHDSLDVNN-PRHREIAAFRLLSKMPTMA 172
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD--------NHQFTELMRLYLTIHSDH 112
A Y+ + G+ + ++ NF +M+ F N M L +H+DH
Sbjct: 173 AMCYKYSI--GQPFVYPRNDLSYAGNFLNMM-FSTPCEPYEVNPILERAMDRILILHADH 229
Query: 113 EGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSE 172
E N S TV GS+ ++P+ AAG+ L GP HG AN+ L L+++ +
Sbjct: 230 EQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEIG-------KK 281
Query: 173 EKLKEFIWNTL--KSGQVVPGYGHAVLRKTDPRYTCQREFAQKHL----PDDSLFKLVSQ 226
E + EF+ + G+GH V + DPR T RE + L D L ++ +
Sbjct: 282 ENIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAME 341
Query: 227 VYKVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLI 284
+ + P IE K +PNVD +SG++L+ G+ + +TV+F ++R +G +A
Sbjct: 342 LENIALNDPYFIE----KKLYPNVDFYSGIILKAMGI-PSSMFTVIFAMARTVGWIAHWS 396
Query: 285 WDRALGLPIERPKSLSTNDLVKQYSKI 311
+ G+ I RP+ L T + +
Sbjct: 397 EMHSDGMKIARPRQLYTGYEKRDFKSD 423
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 147 bits (374), Expect = 4e-41
Identities = 62/288 (21%), Positives = 118/288 (40%), Gaps = 34/288 (11%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+L P HPM ++AL + + + + L+A L +
Sbjct: 111 VLEALPAASHPMDVMRTGVSALGCTLPEKEGHTV--------SGARDIADKLLASLSSIL 162
Query: 61 ATIYRNTFQGGKGIGAIDTNKD-WSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGN 116
Y + G+ I +T+ D +F +L + + M + L ++++HE N
Sbjct: 163 LYWYHYS-HNGERI-QPETDDDSIGGHFLHLL-HGEKPTQSWEKAMHISLVLYAEHEF-N 218
Query: 117 VSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLK 176
S T ++ SD Y + + L GP HG AN+ L ++QQ+ + ++ +
Sbjct: 219 ASTFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGANEVSL----EIQQRYE---TPDEAE 271
Query: 177 EFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQK---HLPDDSLFKLVSQVYKVVPP 233
I +++ +VV G+GH V DPR+ + A++ ++ + ++ V+
Sbjct: 272 ADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRLETVM-- 329
Query: 234 VLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 281
+ K +PN+D S V G+ +T LF ++R G A
Sbjct: 330 -----WETKKMFPNLDWFSAVSYNMMGV-PTEMFTPLFVIARVTGWAA 371
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 147 bits (374), Expect = 5e-41
Identities = 58/287 (20%), Positives = 102/287 (35%), Gaps = 35/287 (12%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+L P++ HPM AI+ L +D +M ++A LP +
Sbjct: 127 LLAKLPDNCHPMDVVRTAISYL---GAEDPDEDD-------AAANRAKAMRMMAVLPTIV 176
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHEGGNV 117
A R + G A + ++ NF M F + ++++H N
Sbjct: 177 AIDMR--RRRGLPPIAPHSGLGYAQNFLHMC-FGEVPETAVVSAFEQSMILYAEHGF-NA 232
Query: 118 SAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKE 177
S +V S SD Y + + L G LHG AN+ V+ ++G +E
Sbjct: 233 STFAARVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVM----HDMIEIG---DPANARE 285
Query: 178 FIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQK---HLPDDSLFKLVSQVYKVVPPV 234
++ L + + G+GH V R D R + ++ + + +
Sbjct: 286 WLRAKLARKEKIMGFGHRVYRHGDSRVPTMKRALERVGTVRDGQRWLDIYQVLAAE---M 342
Query: 235 LIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 281
PN+D +G G ++ +T +F +SR G A
Sbjct: 343 ASA----TGILPNLDFPTGPAYYLMGF-DIASFTPIFVMSRITGWTA 384
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 145 bits (368), Expect = 2e-40
Identities = 67/286 (23%), Positives = 109/286 (38%), Gaps = 39/286 (13%)
Query: 1 MLNNFPNHLHPMSQFSAAITAL---NSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLP 57
L P HPM + L E+ F E + L+A P
Sbjct: 85 TLERIPASSHPMDVMRTGCSMLGNLEPENGF--------------ENEQNIADRLVAIFP 130
Query: 58 VVAATIYRNTFQGGKGIGAIDTNKDWSANFTSML-GFDNHQF-TELMRLYLTIHSDHEGG 115
+ Y + GK I + + F +L G Q + M L ++++HE
Sbjct: 131 AIQCYWYHYS-HHGKRIDTELDDLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEF- 188
Query: 116 NVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL 175
N S + + LSD Y + A + L GPLHG AN+ + L + +
Sbjct: 189 NASTFAARVCSATLSDIYSAVTAAIATLRGPLHGGANEAAM----DLIMLYK---TPSEA 241
Query: 176 KEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQK---HLPDDSLFKLVSQVYKVVP 232
I L + +++ G+GHAV R+ DPR + +AQK + D LF + + +
Sbjct: 242 IAGIKRKLANKELIMGFGHAVYRERDPRNAIIKSWAQKLAPNAADGYLFDISDAIENTM- 300
Query: 233 PVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALG 278
K +PN+D +S + + +T +F +SR G
Sbjct: 301 ------QDEKKLFPNLDFYSATAYHFLNI-PTKLFTPIFVMSRVTG 339
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 146 bits (370), Expect = 2e-40
Identities = 87/295 (29%), Positives = 138/295 (46%), Gaps = 31/295 (10%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNS----ESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKL 56
++ N HPM AA+ A + K +A + G +K++ E Y + L+AK+
Sbjct: 100 VIRNLAK-AHPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAKM 158
Query: 57 PVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFD---NHQFTELMRLYLTIHSDHE 113
P + A YR F G + + +ANF M+ F + + + LYL +H+DHE
Sbjct: 159 PTIVAYHYR--FSRGLEVVRPRDDLGHAANFLYMM-FGREPDPLASRGIDLYLILHADHE 215
Query: 114 GGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEE 173
S H+V S LSD Y S AA + L GPLHG AN+ + ++ +
Sbjct: 216 V-PASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGGANEMAVRNYLEIG-------TPA 267
Query: 174 KLKEFIWNTLK-SGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP----DDSLFKLVSQVY 228
K KE + K G + G GH V + DPR +EF++ ++ +LF + S +
Sbjct: 268 KAKEIVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRDYVAKFGDPQNLFAIASAIE 327
Query: 229 KVV--PPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLA 281
+ V P + + +PNVD SG+ Y G+ Y+T +F +SR +G +A
Sbjct: 328 QEVLSHPYFQQ----RKLYPNVDFWSGIAFYYMGI-PYEYFTPIFAMSRVVGWVA 377
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 3e-06
Identities = 54/357 (15%), Positives = 105/357 (29%), Gaps = 103/357 (28%)
Query: 50 MDLIAKLPVVAATIYRNTF-----QGGKGI-----GAIDTNKDWSANFTSMLGFDNHQFT 99
+D I + R F + + + + N + S + + Q +
Sbjct: 51 IDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPS 106
Query: 100 ELMRLYLT----IHSDHE---GGNVS-AHTVHLVGSAL----SDPYLSFAAGMNG----- 142
+ R+Y+ +++D++ NVS + AL + G+ G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTW 165
Query: 143 LAGPLHGLANQEVLI-------WLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHA 195
+A L + +V WL + + S E + E + L Q+ P +
Sbjct: 166 VA--LDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLY--QIDPNWTSR 216
Query: 196 VLRKTDPRYTCQ-------REFAQKHLPDDSLFKLV-SQVY--KVVPP------VLIETG 239
++ + R K + L LV V K +L+ T
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYEN-CL--LVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 240 KVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSL 299
+ D S + L + + +L + R LP E L
Sbjct: 274 FKQV----TDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYLDCRPQDLPRE---VL 323
Query: 300 STNDLVKQYSKIKSTPGGNRTLGLALIGQ---------THYQRTNHPTKLTIRPANL 347
+TN L++I + +++ N TI ++L
Sbjct: 324 TTNPRR-----------------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 66/378 (17%), Positives = 117/378 (30%), Gaps = 114/378 (30%)
Query: 10 HPMSQFSAAI-TALNS-ESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAT----- 62
+ QF + L E+ + + ND +H L AKL T
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEG-ND-IH-------------ALAAKLLQENDTTLVKT 119
Query: 63 --IYRNTFQGGKGIGAIDTNKDWSANFTSML-------------GFDNHQFTELMRLYLT 107
+ +N K SA F ++ G + F EL LY T
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 108 -------------------IHSDHEGGNVSAHTVHLVGSALSDP-------YLSFAAGMN 141
I + + V ++++ L +P YL
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL-EWLENPSNTPDKDYLLSIP--- 235
Query: 142 GLAGPLHGLANQEV--LIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRK 199
++ PL G+ Q ++ K L G E T S +V + +
Sbjct: 236 -ISCPLIGVI-QLAHYVVTAKLLGFTPG-----ELRSYLKGATGHSQGLVTA---VAIAE 285
Query: 200 TDPRYTCQREF---AQKHLPDDSLFKLVSQVYKVVPPVLIETGKVK--------NPWP-- 246
TD F +K + LF + + Y+ P + ++ P P
Sbjct: 286 TDSW----ESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 247 NVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLI-WDRAL---GLPIERPKSLSTN 302
++ + +Q Y + + N + + + + SL+ + L G P P+SL
Sbjct: 340 SISNLTQEQVQDY-VNKTNSH---LPAGKQVEI--SLVNGAKNLVVSG-P---PQSLYG- 388
Query: 303 DLVKQYSKIKSTPGGNRT 320
L K K+ G +++
Sbjct: 389 -LNLTLRKAKAPSGLDQS 405
Score = 29.2 bits (65), Expect = 2.6
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 20/48 (41%)
Query: 264 MNYYTVLFGVSRALGVLASLIWDRA-------LGLPI-----ERPKSL 299
M+ Y ++ +W+RA G I P +L
Sbjct: 1633 MDLYKT-SKAAQD-------VWNRADNHFKDTYGFSILDIVINNPVNL 1672
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 32.7 bits (75), Expect = 0.20
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 114 GGNVSAHTVHLVGSALSDPYLSFAA---GMNGLAGPLHGLANQEVLIWLKKLQQQ 165
GG S TV + S YL +A +NGL G H L + L WL++ +Q
Sbjct: 560 GGARSTTTVDM-----SRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQ 609
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest
consortium for structural genomics, structure
initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus}
SCOP: c.92.1.3
Length = 156
Score = 27.9 bits (62), Expect = 3.5
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 205 TCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEM 264
++ +PD+++ ++ + VVP + V P++ + G+KE
Sbjct: 61 IAFAARKRRPMPDEAIREMNCDIIYVVPLFISYGLHVTEDLPDLLGFP----RGRGIKEG 116
Query: 265 NYYTVLFGVSRALGV---LASLIWDRA 288
+ + +G + I +
Sbjct: 117 EFEGKKVVICEPIGEDYFVTYAILNSV 143
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 28.3 bits (64), Expect = 4.0
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 43 EYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDN 95
Y+YE + + K+ ++A IY + DT K+ GFD
Sbjct: 422 AYLYEMNDPVEKKIEILAKEIY-----RAGRVEFSDTAKNALKFIKK-HGFDE 468
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
3rbo_A* 3sin_A* 1eg7_A
Length = 557
Score = 28.3 bits (64), Expect = 4.7
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 44 YVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDN 95
+Y + + K+ +A IY G G+ + S LG+ N
Sbjct: 437 VLYNLDLSIKDKIAKIATEIY-----GADGVNYTAEADKAIQRYES-LGYGN 482
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,483,978
Number of extensions: 325906
Number of successful extensions: 753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 28
Length of query: 360
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 265
Effective length of database: 4,049,298
Effective search space: 1073063970
Effective search space used: 1073063970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)