RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14237
(360 letters)
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 435
Score = 275 bits (704), Expect = 3e-90
Identities = 237/308 (76%), Positives = 271/308 (87%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
ML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+MDLIAKLP VA
Sbjct: 125 MLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVA 184
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A IYRN ++ G IGAID+ DWS NFT+MLG+ + QFTELMRLYLTIHSDHEGGNVSAH
Sbjct: 185 AKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAH 244
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
T HLVGSALSDPYLSFAA MNGLAGPLHGLANQEVL+WL +LQ+ +G + S+EKL+++IW
Sbjct: 245 TSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIW 304
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
NTL SG+VVPGYGHAVLRKTDPRYTCQREFA KHLP D +FKLV+Q+YK+VP VL+E GK
Sbjct: 305 NTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGK 364
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
KNPWPNVDAHSGVLLQYYG+ EMNYYTVLFGVSRALGVLA LIW RALG P+ERPKS+S
Sbjct: 365 AKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMS 424
Query: 301 TNDLVKQY 308
T L K
Sbjct: 425 TAGLEKLS 432
>d1k3pa_ a.103.1.1 (A:) Citrate synthase {Escherichia coli [TaxId:
562]}
Length = 426
Score = 186 bits (474), Expect = 5e-56
Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 29/312 (9%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+ + F HPM+ AL + + N+ + + L++K+P +A
Sbjct: 120 LFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNN-------PRHREIAAFRLLSKMPTMA 172
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTE-------LMRLYLTIHSDHE 113
A Y+ + + ++ NF +M+ + E M L +H+DH
Sbjct: 173 AMCYKYSIGQP--FVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADH- 229
Query: 114 GGNVSAHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEE 173
N S TV GS+ ++P+ AAG+ L GP HG AN+ L L+++
Sbjct: 230 EQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFR 289
Query: 174 KLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLP----DDSLFKLVSQVYK 229
+ K+ + G+GH V + DPR T RE + L D L ++ ++
Sbjct: 290 RAKDKND-----SFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELEN 344
Query: 230 VVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRAL 289
+ + K +PNVD +SG++L+ G+ + +TV+F ++R +G +A +
Sbjct: 345 IA--LNDPYFIEKKLYPNVDFYSGIILKAMGI-PSSMFTVIFAMARTVGWIAHWSEMHSD 401
Query: 290 GLPIERPKSLST 301
G+ I RP+ L T
Sbjct: 402 GMKIARPRQLYT 413
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus
[TaxId: 274]}
Length = 374
Score = 167 bits (424), Expect = 3e-49
Identities = 75/313 (23%), Positives = 126/313 (40%), Gaps = 22/313 (7%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+P HPMS A++ D E +YE +DLIAK +
Sbjct: 79 SFKRYPVSAHPMSFLRTAVSE--------FGMLDPTEGDISREALYEKGLDLIAKFATIV 130
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANF--TSMLGFDNHQFTELMRLYLTIHSDHEGGNVS 118
A R + GK + +ANF + + + LM L +H G N S
Sbjct: 131 AANKR--LKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILH-AEHGFNAS 187
Query: 119 AHTVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEF 178
T S +D Y + A + L GP HG AN+ V+ ++ + + E+ +E+
Sbjct: 188 TFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQ-------EIGTPERAREW 240
Query: 179 IWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIET 238
+ L + + G GH V + DPR + A+ K Q+ K+V +
Sbjct: 241 VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEY-QILKIVEEEAGKV 299
Query: 239 GKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKS 298
+ +PNVD +SGV+ G + ++T +F V+R G + ++ + L + RP +
Sbjct: 300 LNPRGIYPNVDFYSGVVYSDLGF-SLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGA 358
Query: 299 LSTNDLVKQYSKI 311
+L Y +
Sbjct: 359 KYVGELDVPYVPL 371
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 367
Score = 156 bits (396), Expect = 3e-45
Identities = 66/301 (21%), Positives = 111/301 (36%), Gaps = 18/301 (5%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
+ P + AL S K+ E E ++ +IAK+ +
Sbjct: 80 TIYLMPKEADAIGLLEVGTAALASI----------DKNFKWKENDKEKAISIIAKMATLV 129
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A +YR I + S S M L +++DH S
Sbjct: 130 ANVYRRKEGNKPRIPEPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDH-EVPASTT 188
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIW 180
+ S LSD Y S A + L GPLHG A +E ++ F
Sbjct: 189 AALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGD------PNRVQNWFND 242
Query: 181 NTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGK 240
+ + G+GH V + DPR ++ A + ++ + ++ + + + I+
Sbjct: 243 KVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEELGIKQFS 302
Query: 241 VKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKSLS 300
K +PN D +SG++ G + +T LF +SR LG LA +I + RP++L
Sbjct: 303 SKGIYPNTDFYSGIVFYALGF-PVYMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALY 361
Query: 301 T 301
Sbjct: 362 V 362
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R
[TaxId: 56673]}
Length = 377
Score = 141 bits (357), Expect = 2e-39
Identities = 57/303 (18%), Positives = 109/303 (35%), Gaps = 17/303 (5%)
Query: 1 MLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVA 60
++ HPM A++ N + E E +M L+A P V
Sbjct: 82 AIDLLSTACHPMDVARTAVSV--------LGANHARAQDSSPEANLEKAMSLLATFPSVV 133
Query: 61 ATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHEGGNVSAH 120
A R D + + + + + E + + ++ N S
Sbjct: 134 AYDQRRRRGEELIEPREDLDYSANFLWMTFGEEAAPEVVEAFNVSMILY-AEHSFNASTF 192
Query: 121 TVHLVGSALSDPYLSFAAGMNGLAGPLHGLANQEVLIWLKKLQQQVGDNVSEEKL--KEF 178
T ++ S L+D + + + L GPLHG AN+ V+ +++ + +++ E K +
Sbjct: 193 TARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDESLDEAATRSKAW 252
Query: 179 IWNTLKSGQVVPGYGHAVLRKTDPRYTCQREFAQKHLPDDSLFKLVSQVYKVVPPVLIET 238
+ + L + V G+GH V + D R + + + + + +
Sbjct: 253 MVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPE----MLGLYNGLEAAM 308
Query: 239 GKVKNPWPNVDAHSGVLLQYYGLKEMNYYTVLFGVSRALGVLASLIWDRALGLPIERPKS 298
+ K PN+D +G G + +T LF +R G A I ++ + RP S
Sbjct: 309 EEAKQIKPNLDYPAGPTYNLMGF-DTEMFTPLFIAARITGWTAH-IMEQVADNALIRPLS 366
Query: 299 LST 301
Sbjct: 367 EYN 369
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 371
Score = 133 bits (336), Expect = 2e-36
Identities = 72/286 (25%), Positives = 124/286 (43%), Gaps = 19/286 (6%)
Query: 28 FAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANF 87
+ +D E VY + + AK+P + A YR + G +ANF
Sbjct: 99 YLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYR--IKNGLEYVPPKEKLSHAANF 156
Query: 88 TSMLGFDNH--QFTELMRLYLTIHSDHEGGNVSAHTVHLVGSALSDPYLSFAAGMNGLAG 145
ML + ++ + M + L ++++HE N S V VGS LSD Y + AG+ L G
Sbjct: 157 LYMLHGEEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKG 215
Query: 146 PLHGLANQEVLIWLKKLQQQVGDNVSEEKLKEFIWNTLKSGQVVPGYGHAVLRKTDPRYT 205
P+HG A +E + ++ EK++E+ + L+ + + G GH V + DPR
Sbjct: 216 PIHGGAVEEAIKQFMEIGS-------PEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRAR 268
Query: 206 CQREFAQKHLPDDSLFKLVSQVYKVVPPVLIETGKVKNPWPNVDAHSGVLLQYYGLKEMN 265
+++A K ++ ++V L + K NVD SG++ + +
Sbjct: 269 IFKKYASKLGDKKLFEIAE-RLERLVEEYLSK----KGISINVDYWSGLVFYGMKI-PIE 322
Query: 266 YYTVLFGVSRALGVLASLIWDRALGLPIERPKSLSTNDLVKQYSKI 311
YT +F + R G A + + I RP+ ++ K+Y I
Sbjct: 323 LYTTIFAMGRIAGWTAH-LAEYVSHNRIIRPRLQYVGEIGKKYLPI 367
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 29.8 bits (67), Expect = 0.52
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 39 SKYWEYVYEDSMDLIAKLPVVAATIYRNTFQGGKGIGAIDTNKDWSANFTSMLGFDN 95
+ +Y + + K+ +A IY G G+ + S+ G+ N
Sbjct: 426 PSNFHVLYNLDLSIKDKIAKIATEIY-----GADGVNYTAEADKAIQRYESL-GYGN 476
>d2f1da1 d.14.1.9 (A:10-95) Imidazole glycerol phosphate dehydratase
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 27.0 bits (60), Expect = 1.1
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 16/78 (20%)
Query: 61 ATIYRNTFQ---------GGKGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSD 111
+ R T + G G+ + + ML Q + + +
Sbjct: 4 GEVKRVTKETNVSVKINLDGTGVADSSSGIPF---LDHML----DQLASHGLFDVHVRAT 56
Query: 112 HEGGNVSAHTVHLVGSAL 129
+ HT + A+
Sbjct: 57 GDVHIDDHHTNEDIALAI 74
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 304
Score = 27.0 bits (59), Expect = 3.7
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 72 KGIGAIDTNKDWSANFTSMLGFDNHQFTELMRLYLTIHSDHE-GGNVSAHTVHLVGSALS 130
G TN D S FDN ++ L++L + SD E A T+ +V S S
Sbjct: 211 NATGDNLTNLDLSTPDQ----FDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSS 266
Query: 131 DPYL---SFAAGM 140
+ +F M
Sbjct: 267 NQNTFFSNFRVSM 279
>d1x8da1 d.58.4.21 (A:1-104) L-rhamnose mutarotase YiiL
{Escherichia coli [TaxId: 562]}
Length = 104
Score = 25.1 bits (55), Expect = 5.8
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 41 YWEYVYEDSMDLIAKLPVVA 60
E E+ + +A V
Sbjct: 55 MVEIESEERWNAVASTDVCQ 74
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1
protease {Human immunodeficiency virus type 1 [TaxId:
11676]}
Length = 99
Score = 24.8 bits (55), Expect = 8.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 14/45 (31%)
Query: 305 VKQYSKIKSTPGGNRTLGLALIGQTHYQRTNHPTKLTIRPANLVG 349
V+QY +I G++ +G L+G T PAN++G
Sbjct: 56 VRQYDQIIIEIAGHKAIGTVLVGPT--------------PANIIG 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,321,040
Number of extensions: 60372
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 13
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)